BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5622
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 123/240 (51%), Gaps = 17/240 (7%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
LS+ + ++K++ Q SF RGA + LS ++ KGVI+AS GNHAQ + G
Sbjct: 69 LSDRLGVNFYIKREDKQRVFSFXLRGAYNMMSNLSREELDKGVITASAGNHAQGVALAGQ 128
Query: 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
RLN +VMP P +KI A R G V++ G EA+ AL+ + GL YI
Sbjct: 129 RLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTHALELSEKDGLKYIP---- 184
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
+D P ++ GQGT+G EI Q+ +I A+ +PVGGGGLIAGVA I
Sbjct: 185 ------PFDDPGVIKGQGTIGTEINRQLKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKI 238
Query: 209 VGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKM 268
+ GVE AS + ++ G +S T ADG+AV LVG F LID M
Sbjct: 239 I-------GVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGM 291
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 120 bits (301), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 133/247 (53%), Gaps = 22/247 (8%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQAM 83
S L++LT +F K + FQ TGSFK RGA A+ L D +K K V++ S GNH QA+
Sbjct: 32 SILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQAL 91
Query: 84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
Y IP +V+P AP K A + YGA+++ + +N+A + E
Sbjct: 92 TYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEE------ 145
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIM 203
+ G+ V P ++AGQGT+ LE+++QV +DA+VVPVGGGG++AG+A +
Sbjct: 146 ----TEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAI---TVK 198
Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP-TLADGLAVPLVGWNAFETAA 262
A + +V + + +D C + + +K GK P P T+ADG+ +G N +
Sbjct: 199 ALKPSVKVYAAEPS-NADDC--YQSKLK-GKLMPNLYPPETIADGVKSS-IGLNTWPIIR 253
Query: 263 PLIDKMF 269
L+D +F
Sbjct: 254 DLVDDIF 260
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 17/245 (6%)
Query: 24 SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
K LS I +K++ Q SFK RGA + L+E+QK GVI+AS GNHAQ +
Sbjct: 35 QKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGV 94
Query: 84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
+ +RL + +VMP +K+ A R +G V++ GA+ EAK A++ + G T+
Sbjct: 95 AFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTW- 153
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIM 203
V +DHP ++AGQGT+ LE++ Q A++D + VPVGGGGL AGVA +M
Sbjct: 154 ---------VPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLM 204
Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAP 263
+I VE++ A A+ G P + A+G+AV +G F
Sbjct: 205 P-------QIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQE 257
Query: 264 LIDKM 268
+D +
Sbjct: 258 YLDDI 262
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 128/244 (52%), Gaps = 17/244 (6%)
Query: 25 KKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMC 84
+ ++ SE K EIFLK + Q TGSF RGA L L+E +K+KGV++ S GNHAQ +
Sbjct: 45 RSNYFSERCKGEIFLKFENMQRTGSFXIRGAFNKLSSLTEAEKRKGVVACSAGNHAQGVS 104
Query: 85 YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
+ L I VVMP AP K+ A Y A V++ G + N + K +E+ T
Sbjct: 105 LSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNF----NDTIAKVSEIVET--- 157
Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMA 204
+ + YD P ++AGQGT+GLEI++ + ++D ++VP+GGGGLIAG+A I
Sbjct: 158 ---EGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINP 214
Query: 205 GQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPL 264
+ GV+++ + + G+ T TLADG V G +E L
Sbjct: 215 TIKVI-------GVQAENVHGMAASYYTGEITTHRTTGTLADGCDVSRPGNLTYEIVREL 267
Query: 265 IDKM 268
+D +
Sbjct: 268 VDDI 271
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
E+F K + FQ G+FK RGA AL L+E Q+K GV++ S GNHAQA+ L IP
Sbjct: 42 EVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALSAKILGIPAK 101
Query: 96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLG 155
++MP+ AP K+ A + YG VI+ + + +A + GLT I
Sbjct: 102 IIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIP----------P 151
Query: 156 YDHPDIMAGQGTVGLEIVDQVANIDAIVV 184
YDHP ++AGQGT E+ ++V +DA+ V
Sbjct: 152 YDHPHVLAGQGTAAKELFEEVGPLDALFV 180
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 13/157 (8%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQAM 83
S L++LT +F K + FQ TGSF RGA A+ L D +K K V++ S GNH QA+
Sbjct: 32 SILNQLTGRNLFFKCELFQKTGSFXIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQAL 91
Query: 84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
Y IP +V+P AP K A + YGA+++ + +N+A + E
Sbjct: 92 TYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEE------ 145
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANID 180
+ G+ V P ++AGQGT+ LE+++QV +D
Sbjct: 146 ----TEGIXVHPNQEPAVIAGQGTIALEVLNQVPLVD 178
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 131/247 (53%), Gaps = 22/247 (8%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ---KKKGVISASLGNHAQAM 83
S L+++ +F K + FQ TGSFK RGA A+ L D K K V++ S GNH QA+
Sbjct: 32 SILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTLEGKPKAVVTHSSGNHGQAL 91
Query: 84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
Y IP +V+P AP K A + YGA+++ + +N+A + E
Sbjct: 92 TYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYSEPSDESRENVAQRIIQE------ 145
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIM 203
+ G+ V P ++AGQGT+ LE+++QV +DA+VVPVGGGG++AG+A I
Sbjct: 146 ----TEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMVAGIAI---TIK 198
Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP-TLADGLAVPLVGWNAFETAA 262
+ +V + + +D C + + +K G+ TP P T+ADG+ +G N +
Sbjct: 199 TLKPSVKVYAAEPS-NADDC--YQSKLK-GELTPNLHPPETIADGVKSS-IGLNTWPIIR 253
Query: 263 PLIDKMF 269
L+D +F
Sbjct: 254 DLVDDVF 260
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 42 DFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV 101
+ Q TGSFK RGA L L + KG+++ S GNHAQ + Y L + VVMP
Sbjct: 42 EHLQKTGSFKARGALSKALAL---ENPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPED 98
Query: 102 APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDI 161
A K R YGA V+ G K + +A E G I+ +D P +
Sbjct: 99 ASPYKKACARAYGAEVVDRGVTAKNREEVARALQEETGYALIH----------PFDDPLV 148
Query: 162 MAGQGTVGLEIVDQVANI----DAIVVPV 186
+AGQGT GLE++ Q + A++ PV
Sbjct: 149 IAGQGTAGLELLAQAGRMGVFPGAVLAPV 177
>pdb|1PWE|A Chain A, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|B Chain B, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|C Chain C, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|D Chain D, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|E Chain E, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWE|F Chain F, Rat Liver L-Serine Dehydratase Apo Enzyme
pdb|1PWH|A Chain A, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
pdb|1PWH|B Chain B, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
pdb|1PWH|C Chain C, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
pdb|1PWH|D Chain D, Rat Liver L-Serine Dehydratase- Complex With Pyridoxyl-(O-
Methyl-Serine)-5-Monophosphate
Length = 327
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 110/260 (42%), Gaps = 37/260 (14%)
Query: 1 MSALKSVHCGQDLGFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALL 60
M+A +S+H L RD LS++ +FLK D Q +GSFK RG + L
Sbjct: 1 MAAQESLHVKTPL----RDSM------ALSKVAGTSVFLKMDSSQPSGSFKIRGIGH-LC 49
Query: 61 MLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120
+ Q K + +S GN A Y RL +P T+V+P P + I+ + GATV V
Sbjct: 50 KMKAKQGCKHFVCSSAGNAGMATAYAARRLGLPATIVVPSTTPALTIERLKNEGATVEVV 109
Query: 121 GADMKEAKNIALKKGAEL---GLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA 177
G + EA I L K E G YI+ +D P I G ++ E+ + ++
Sbjct: 110 GEMLDEA--IQLAKALEKNNPGWVYIS----------PFDDPLIWEGHTSLVKELKETLS 157
Query: 178 NIDAIVVPVGGGGLIAGVAYDHPDIMAGQG--TVGLEIVD-QGVESDRCASFSTAIKHGK 234
G ++ V QG VG E V +E+ SF A+K GK
Sbjct: 158 --------AKPGAIVLSVGGGGLLCGVVQGLREVGWEDVPIIAMETFGAHSFHAAVKEGK 209
Query: 235 PTPVSVQPTLADGLAVPLVG 254
+ ++A L V VG
Sbjct: 210 LVTLPKITSVAKALGVNTVG 229
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 90/216 (41%), Gaps = 27/216 (12%)
Query: 34 KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIP 93
K +I+LK + TGSFK+RG A+ E K+ VI AS GN + + + +R +
Sbjct: 46 KGKIYLKYEGLNPTGSFKDRGMTLAISKAVE-AGKRAVICASTGNTSASAAAYAARAGLR 104
Query: 94 VTVVMPIVA-PIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLS 152
V++P A I K+ YGA V+ +A NI K G + +N
Sbjct: 105 AYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNSV------ 158
Query: 153 VLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAG------VAYDH------ 199
+P + GQ T EI D + D +PVG G I + Y+
Sbjct: 159 -----NPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKL 213
Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP 235
P +M Q IV +G + +TAIK G P
Sbjct: 214 PRMMGWQAEGAAPIV-KGYPIKNPQTIATAIKIGNP 248
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNI 92
IFLK + GS K+R A + ++L +++ K G++ + GN A+ G++
Sbjct: 32 RIFLKLEKNNPGGSVKDRPALF--MILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGH 89
Query: 93 PVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSG 150
V + MP + + + + GA +++ + MK A AL+ E G +N
Sbjct: 90 RVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLN------ 143
Query: 151 LSVLGYDHP-DIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGV 195
+++P ++ + Q T G EI+ Q+ IDA V VG GG I+GV
Sbjct: 144 ----QFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGV 186
>pdb|4H27|A Chain A, Modulating The Function Of Human Serine Racemase And Human
Serine Dehydratase By Protein Engineering
Length = 364
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGV---ISASLGNHAQAMCY 85
LS++ ++LK D Q +GSF RG + + K+G + +S GN A Y
Sbjct: 55 LSKMAGTSVYLKMDSAQPSGSFXIRGIGH----FCKRWAKQGCAHFVCSSSGNAGMAAAY 110
Query: 86 HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIA 131
+L +P T+V+P P + I+ + GATV V G + EA +A
Sbjct: 111 AARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDEAFELA 156
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNI 92
I LK + GS K+R A + ++L +++ K G++ + GN A+ G++
Sbjct: 20 RIXLKLEKNNPGGSVKDRPALF--MILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGH 77
Query: 93 PVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSG 150
V + MP + + + + GA +++ + MK A AL+ E G +N
Sbjct: 78 RVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLN------ 131
Query: 151 LSVLGYDHP-DIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGV 195
+++P ++ + Q T G EI+ Q+ IDA V VG GG I+GV
Sbjct: 132 ----QFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGV 174
>pdb|2RKB|A Chain A, Serine Dehydratase Like-1 From Human Cancer Cells
pdb|2RKB|B Chain B, Serine Dehydratase Like-1 From Human Cancer Cells
pdb|2RKB|C Chain C, Serine Dehydratase Like-1 From Human Cancer Cells
pdb|2RKB|D Chain D, Serine Dehydratase Like-1 From Human Cancer Cells
pdb|2RKB|E Chain E, Serine Dehydratase Like-1 From Human Cancer Cells
Length = 318
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG---VISASLGNHAQAMCY 85
LS++ M +FLK + Q +GSFK RG + ++ KKG ++ +S GN A Y
Sbjct: 16 LSQVAGMPVFLKCENVQPSGSFKIRGIGH----FCQEMAKKGCRHLVCSSGGNAGIAAAY 71
Query: 86 HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKE----AKNIALKKGAELGLT 141
+L IP T+V+P + +Q + GA V + G E A+ +A + G E
Sbjct: 72 AARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEANLRAQELAKRDGWE---- 127
Query: 142 YINGYLSSGLSVLGYDHPDIMAGQGTVGLEI 172
+V +DHP I G ++ E+
Sbjct: 128 ----------NVPPFDHPLIWKGHASLVQEL 148
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALL-MLSEDQKKKGVISASLGNHAQAMCY 85
++LS+ T I LK + TGSFK+RG A+ L+ Q + V+ AS GN + +
Sbjct: 45 TNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ--RAVLCASTGNTSASAAA 102
Query: 86 HGSRLNIPVTVVMPIVAPIM-KIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
+ +R I V++P M K+ +GA +I + + +A K A+
Sbjct: 103 YAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADF------ 156
Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLI 192
+S++ +P + GQ T EIVD + D +PVG G I
Sbjct: 157 ----PTISLVNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNI 201
>pdb|1P5J|A Chain A, Crystal Structure Analysis Of Human Serine Dehydratase
Length = 372
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGV---ISASLGNHAQAMCY 85
LS++ ++LK D Q +GSFK RG + + K+G + +S GN A Y
Sbjct: 55 LSKMAGTSVYLKMDSAQPSGSFKIRGIGH----FCKRWAKQGCAHFVCSSAGNAGMAAAY 110
Query: 86 HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIA 131
+L +P T+V+P P + I+ + GAT V G + EA +A
Sbjct: 111 AARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELA 156
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 27/193 (13%)
Query: 34 KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG-------VISASLGNHAQAMCYH 86
K E+ K +FF GS K+R +L M+ ED ++ G +I + GN +
Sbjct: 124 KCELLAKCEFFNAGGSVKDR---ISLRMI-EDAERDGTLKPGDTIIEPTSGNTGIGLALA 179
Query: 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA----DMKEAK-NIALKKGAELGLT 141
+ +VMP K+ R GA ++ D E+ +A + E+ +
Sbjct: 180 AAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNS 239
Query: 142 YI-NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVAYDH 199
+I + Y ++ + YD T EI+ Q +D +V VG GG I G+A
Sbjct: 240 HILDQYRNASNPLAHYD---------TTADEILQQCDGKLDMLVASVGTGGTITGIARKL 290
Query: 200 PDIMAGQGTVGLE 212
+ G +G++
Sbjct: 291 KEKCPGCRIIGVD 303
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 27/193 (13%)
Query: 34 KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG-------VISASLGNHAQAMCYH 86
K E+ K +FF GS K+R + L + ED ++ G +I + GN +
Sbjct: 59 KCELLAKCEFFNAGGSVKDRIS----LRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALA 114
Query: 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA----DMKEAK-NIALKKGAELGLT 141
+ +VMP K+ R GA ++ D E+ +A + E+ +
Sbjct: 115 AAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNS 174
Query: 142 YI-NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVAYDH 199
+I + Y ++ + YD T EI+ Q +D +V VG GG I G+A
Sbjct: 175 HILDQYRNASNPLAHYD---------TTADEILQQCDGKLDMLVASVGTGGTITGIARKL 225
Query: 200 PDIMAGQGTVGLE 212
+ G +G++
Sbjct: 226 KEKCPGCRIIGVD 238
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 27/215 (12%)
Query: 35 MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV 94
+ ++ K + TGSFK+RG A+ E + V AS GN A + + +R I
Sbjct: 45 IRLYAKYEGLNPTGSFKDRGMTLAVSKAVEG-GAQAVACASTGNTAASAAAYAARAGILA 103
Query: 95 TVVMPI-VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSV 153
VV+P + K+ +GA ++ + +A + K + +N
Sbjct: 104 IVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDALRLTQKLTEAFPVALVNSV------- 156
Query: 154 LGYDHPDIMAGQGTVGLEIVDQVANIDAI-VVPVGGGGLIA------------GVAYDHP 200
+P + GQ T+ E+VD++ + +PVG G I G A P
Sbjct: 157 ----NPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLP 212
Query: 201 DIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP 235
++ Q +V G +R + +TAI+ G P
Sbjct: 213 RMLGFQAAGAAPLV-LGRPVERPETLATAIRIGNP 246
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Query: 37 IFLKKDFFQVTGSFKER-GACYALLMLSEDQKKKG--VISASLGNHAQAMCYHGSRLNIP 93
I +K ++F S K+R G + + + K G +I ++ GN A+C G+
Sbjct: 43 ILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYR 102
Query: 94 VTVVMPIVAPIMKIQACRRYGATVIV-EGADMKEAKNIALKKGAELGLTYINGYLSSG-- 150
V + MP + + + +GA +I+ EG KKG + +N +
Sbjct: 103 VNIAMPSTMSVERQMIMKAFGAELILTEG-----------KKGMPGAIEEVNKMIKENPG 151
Query: 151 --LSVLGYDHPDIMAGQGTVGLEI-VDQVANIDAIVVPVGGGGLIAGVA 196
+ +PD A EI D +D +V VG G + GVA
Sbjct: 152 KYFVANQFGNPDNTAAHHYTANEIWEDTDGEVDIVVSAVGTSGTVIGVA 200
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Query: 37 IFLKKDFFQVTGSFKER-GACYALLMLSEDQKKKG--VISASLGNHAQAMCYHGSRLNIP 93
I +K ++F S K+R G + + + K G +I ++ GN A+C G+
Sbjct: 44 ILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYR 103
Query: 94 VTVVMPIVAPIMKIQACRRYGATVIV-EGADMKEAKNIALKKGAELGLTYINGYLSSG-- 150
V + MP + + + +GA +I+ EG KKG + +N +
Sbjct: 104 VNIAMPSTMSVERQMIMKAFGAELILTEG-----------KKGMPGAIEEVNKMIKENPG 152
Query: 151 --LSVLGYDHPDIMAGQGTVGLEI-VDQVANIDAIVVPVGGGGLIAGVA 196
+ +PD A EI D +D +V VG G + GVA
Sbjct: 153 KYFVANQFGNPDNTAAHHYTANEIWEDTDGEVDIVVSAVGTSGTVIGVA 201
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2E|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2J|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
pdb|2O2J|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
Length = 422
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 23/227 (10%)
Query: 22 FNSKKSHLSELTKM-------EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISA 74
+ + S L E T++ IFLK++ TGS K L+ K + +
Sbjct: 77 YAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAET 136
Query: 75 SLGNHAQAMCYHGSRLNIPVTVVM---PIVAPIMKIQACRRYGATVIVEGADMKEAKNIA 131
G H A + L + + M + + R GA V+ K K+
Sbjct: 137 GAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAI 196
Query: 132 LKKGAELGLTYINGYLSSGLSVLGYDHPDIMAG-QGTVGLEIVDQVAN-----IDAIVVP 185
+ + N Y G + + P ++ Q +G+E Q+ DA+V
Sbjct: 197 NEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVAC 256
Query: 186 VGGGGLIAGVAY---DHPDIMAGQGTVGLEIVDQGVESDRCASFSTA 229
VGGG G+ + D P + VG E GVE+ R A+ TA
Sbjct: 257 VGGGSNAIGIFHAFLDDPGVR----LVGFEAAGDGVETGRHAATFTA 299
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 110 CRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVG 169
C GA V ++G AL GA+L L S LG H D++AG +
Sbjct: 226 CHEKGALVCIDGTFATPLNQKALALGADL-------VLHSATKFLG-GHNDVLAGCISGP 277
Query: 170 LEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA 224
L++V ++ N+ I+ GG L AY I+ G T+ L + Q + R A
Sbjct: 278 LKLVSEIRNLHHIL----GGALNPNAAY---LIIRGMKTLHLRVQQQNSTALRMA 325
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 37 IFLKKDFFQVTGSFKERGACYALLMLSEDQK-----KKGVISASLGNHAQAMCYHGSRLN 91
+ +K++ Q T S K+R A YA++ +E++ K +I + GN +M + +
Sbjct: 52 VAVKQEMMQPTASIKDRPA-YAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKG 110
Query: 92 IPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL 138
+ + MP + + R +GA +I+ D + +KK EL
Sbjct: 111 YKMVLTMPSYTSLERRVTMRAFGAELIL--TDPAKGMGGTVKKAYEL 155
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 27/174 (15%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQK--KKG--VISASLGNHAQAMCYHGSRLN 91
E++ K +F GS K+R Y ++ +E+Q K G +I + GN + +
Sbjct: 78 EMYAKCEFLNPGGSVKDR-IGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKG 136
Query: 92 IPVTVVMPIVAPIMKIQACRRYGATVI---VEGA-DMKE-----AKNIALKKGAELGLTY 142
+VMP K+ A R GA +I E A D E A+ + + + L
Sbjct: 137 YKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVL-- 194
Query: 143 INGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGV 195
+ Y ++G + YD GT EI+ Q+ N +D IVV G G I+G+
Sbjct: 195 -DQYRNAGNPLAHYD--------GTAA-EILWQLDNKVDMIVVSAGTAGTISGI 238
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 37 IFLKKDFFQVTGSFKERGACYALLMLSEDQK-----KKGVISASLGNHAQAMCYHGSRLN 91
+ +K++ Q T S +R A YA++ +E++ K +I + GN +M + +
Sbjct: 52 VAVKQEMMQPTASIADRPA-YAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKG 110
Query: 92 IPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL 138
+ + MP + + R +GA +I+ D + +KK EL
Sbjct: 111 YKMVLTMPSYTSLERRVTMRAFGAELIL--TDPAKGMGGTVKKAYEL 155
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 113 YGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEI 172
Y V E A + E ALK+ E + L +GL++ D+ D +A + + LE+
Sbjct: 285 YTRLVRYEAARIHEK---ALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLEL 341
Query: 173 VDQVANIDAIVVPV 186
V + +DA+++PV
Sbjct: 342 VKALRGVDALLLPV 355
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound
Ii
Length = 397
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 21/224 (9%)
Query: 24 SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
+K +++ T+ ++LK++ G+ K L+ K + + GNH A
Sbjct: 60 TKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGNHGVAS 119
Query: 84 CYHGSRLNIPVTVVM---PIVAPIMKIQACRRYGATVI---VEGADMKEAKNIALKKGAE 137
+ L + + M + + R GA VI A +K+A N AL+ +
Sbjct: 120 ALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALR---D 176
Query: 138 LGLTYINGYLSSGLSVLGYDHPDI------MAGQGTVGLEIVDQVANI-DAIVVPVGGGG 190
+Y + G + + +P I M G+ T +I+D+ + DA++ VGGG
Sbjct: 177 WSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKA-QILDKEGRLPDAVIACVGGGS 235
Query: 191 LIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK 234
G+ D + + G +G+E G+E+ +KHG+
Sbjct: 236 NAIGMFADFINDTS-VGLIGVEPGGHGIET---GEHGAPLKHGR 275
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex
Length = 397
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 21/224 (9%)
Query: 24 SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
+K +++ T+ ++LK++ G+ K L+ K + + GNH A
Sbjct: 60 TKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAEVGAGNHGVAS 119
Query: 84 CYHGSRLNIPVTVVM---PIVAPIMKIQACRRYGATVI---VEGADMKEAKNIALKKGAE 137
+ L + + M + + R GA VI A +K+A N AL+ +
Sbjct: 120 ALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALR---D 176
Query: 138 LGLTYINGYLSSGLSVLGYDHPDI------MAGQGTVGLEIVDQVANI-DAIVVPVGGGG 190
+Y + G + + +P I M G+ T +I+D+ + DA++ VGGG
Sbjct: 177 WSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKA-QILDKEGRLPDAVIACVGGGS 235
Query: 191 LIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK 234
G+ D + + G +G+E G+E+ +KHG+
Sbjct: 236 NAIGMFADFINDTS-VGLIGVEPGGHGIET---GEHGAPLKHGR 275
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 26/109 (23%)
Query: 36 EIFLKKD-FFQVTGSFKERGACY-------------ALLMLSEDQKK------------K 69
++ LKKD ++GS K RG Y LL L +D K
Sbjct: 102 QLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQY 161
Query: 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI 118
+ S GN ++ +R+ VTV M A K R +G TV+
Sbjct: 162 SIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVV 210
>pdb|2HIV|A Chain A, Atp-Dependent Dna Ligase From S. Solfataricus
pdb|2HIX|A Chain A, Atp Dependent Dna Ligase From S. Solfataricus Bound To Atp
Length = 621
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 179 IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP-TP 237
+DA+ + GGG + + ++ A G + IV++G+E A+K KP
Sbjct: 200 LDAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIE---------ALKTLKPQVG 250
Query: 238 VSVQPTLADGLAVP 251
+ ++P LA+ L+ P
Sbjct: 251 IPIRPMLAERLSNP 264
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 9/134 (6%)
Query: 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKE 126
+K + + GNH + + + +L + MP + ++ A GA IV + +
Sbjct: 111 EKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDD 170
Query: 127 AKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMAGQGTVGLEIVDQVANIDA---- 181
+ ++ + G + G + + P IM G T+ E V+Q+ +
Sbjct: 171 TVRLTMQHAQQHGWEVVQDTAWEGYTKI----PTWIMQGYATLADEAVEQMREMGVTPTH 226
Query: 182 IVVPVGGGGLIAGV 195
+++ G G + GV
Sbjct: 227 VLLQAGVGAMAGGV 240
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 9/134 (6%)
Query: 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKE 126
+K + + GNH + + + +L + MP + ++ A GA IV + +
Sbjct: 111 EKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDD 170
Query: 127 AKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMAGQGTVGLEIVDQVANIDA---- 181
+ ++ + G + G + + P IM G T+ E V+Q+ +
Sbjct: 171 TVRLTMQHAQQHGWEVVQDTAWEGYTKI----PTWIMQGYATLADEAVEQMREMGVTPTH 226
Query: 182 IVVPVGGGGLIAGV 195
+++ G G + GV
Sbjct: 227 VLLQAGVGAMAGGV 240
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 9/134 (6%)
Query: 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKE 126
+K + + GNH + + + +L + MP + ++ A GA IV + +
Sbjct: 111 EKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDD 170
Query: 127 AKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMAGQGTVGLEIVDQVANIDA---- 181
+ ++ + G + G + + P IM G T+ E V+Q+ +
Sbjct: 171 TVRLTMQHAQQHGWEVVQDTAWEGYTKI----PTWIMQGYATLADEAVEQMREMGVTPTH 226
Query: 182 IVVPVGGGGLIAGV 195
+++ G G + GV
Sbjct: 227 VLLQAGVGAMAGGV 240
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 21/224 (9%)
Query: 24 SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
+K +++ T+ ++LK++ G+ K L+ K + + G H A
Sbjct: 59 TKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVAS 118
Query: 84 CYHGSRLNIPVTVVM---PIVAPIMKIQACRRYGATVI---VEGADMKEAKNIALKKGAE 137
+ L + + M + + R GA VI A +K+A N AL A+
Sbjct: 119 ALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEAL---AD 175
Query: 138 LGLTYINGYLSSGLSVLGYDHPDI------MAGQGTVGLEIVDQVANI-DAIVVPVGGGG 190
+Y + G + + +P I M G+ T +I+D+ + DA++ VGGG
Sbjct: 176 WSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKA-QILDKEGRLPDAVIACVGGGS 234
Query: 191 LIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK 234
G+ D + + G +G+E G+E+ +KHG+
Sbjct: 235 NAIGMFADFINDTS-VGLIGVEPGGHGIET---GEHGAPLKHGR 274
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxy-4- Fluorophenylthio)-Butylphosphonic Acid
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylsulfinyl)- Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Aminophenylthio)- Butylphosphonic Acid
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)-1- Butenylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)- Butylphosphonic Acid
Length = 397
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 21/224 (9%)
Query: 24 SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
+K +++ T+ ++LK++ G+ K L+ K + + G H A
Sbjct: 60 TKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVAS 119
Query: 84 CYHGSRLNIPVTVVM---PIVAPIMKIQACRRYGATVI---VEGADMKEAKNIALKKGAE 137
+ L + + M + + R GA VI A +K+A N AL+ +
Sbjct: 120 ALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALR---D 176
Query: 138 LGLTYINGYLSSGLSVLGYDHPDI------MAGQGTVGLEIVDQVANI-DAIVVPVGGGG 190
+Y + G + + +P I M G+ T +I+D+ + DA++ VGGG
Sbjct: 177 WSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKA-QILDKEGRLPDAVIACVGGGS 235
Query: 191 LIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK 234
G+ D + + G +G+E G+E+ +KHG+
Sbjct: 236 NAIGMFADFINDTS-VGLIGVEPGGHGIET---GEHGAPLKHGR 275
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With L-ser Bound To
The Beta Site
Length = 394
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 21/224 (9%)
Query: 24 SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
+K +++ T+ ++LK++ G+ K L+ K + + G H A
Sbjct: 59 TKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVAS 118
Query: 84 CYHGSRLNIPVTVVM---PIVAPIMKIQACRRYGATVI---VEGADMKEAKNIALKKGAE 137
+ L + + M + + R GA VI A +K+A N AL+ +
Sbjct: 119 ALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALR---D 175
Query: 138 LGLTYINGYLSSGLSVLGYDHPDI------MAGQGTVGLEIVDQVANI-DAIVVPVGGGG 190
+Y + G + + +P I M G+ T +I+D+ + DA++ VGGG
Sbjct: 176 WSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKA-QILDKEGRLPDAVIACVGGGS 234
Query: 191 LIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK 234
G+ D + + G +G+E G+E+ +KHG+
Sbjct: 235 NAIGMFADFINDTS-VGLIGVEPGGHGIET---GEHGAPLKHGR 274
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
pdb|2CLE|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6)-
Lowf6 Complex
pdb|2CLH|B Chain B, Tryptophan Synthase In Complex With (Naphthalene-2'-
Sulfonyl)-2-Amino-1-Ethylphosphate (F19)
pdb|2CLM|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-
Ethylphosphate (F6f)
pdb|2CLO|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With (Naphthalene-2'-Sulfonyl)-2-Amino-1-Ethylphosphate
(F19)
pdb|2CLF|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6) -
Highf6 Complex
Length = 396
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 21/224 (9%)
Query: 24 SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
+K +++ T+ ++LK++ G+ K L+ K + + G H A
Sbjct: 59 TKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVAS 118
Query: 84 CYHGSRLNIPVTVVM---PIVAPIMKIQACRRYGATVI---VEGADMKEAKNIALKKGAE 137
+ L + + M + + R GA VI A +K+A N AL+ +
Sbjct: 119 ALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALR---D 175
Query: 138 LGLTYINGYLSSGLSVLGYDHPDI------MAGQGTVGLEIVDQVANI-DAIVVPVGGGG 190
+Y + G + + +P I M G+ T +I+D+ + DA++ VGGG
Sbjct: 176 WSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKA-QILDKEGRLPDAVIACVGGGS 234
Query: 191 LIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK 234
G+ D + + G +G+E G+E+ +KHG+
Sbjct: 235 NAIGMFADFINDTS-VGLIGVEPGGHGIET---GEHGAPLKHGR 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,915,046
Number of Sequences: 62578
Number of extensions: 332476
Number of successful extensions: 931
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 73
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)