Query psy5622
Match_columns 269
No_of_seqs 159 out of 1522
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:23:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1171 IlvA Threonine dehydra 100.0 2.3E-57 4.9E-62 409.2 24.3 234 19-269 23-260 (347)
2 KOG1250|consensus 100.0 3.3E-55 7E-60 393.6 22.6 238 15-269 60-299 (457)
3 PRK08526 threonine dehydratase 100.0 2.3E-54 5.1E-59 403.9 25.4 235 18-269 17-252 (403)
4 PRK12483 threonine dehydratase 100.0 1.2E-53 2.6E-58 408.2 25.4 235 18-269 34-270 (521)
5 PLN02970 serine racemase 100.0 2.7E-53 5.9E-58 387.8 25.7 234 18-269 24-258 (328)
6 PRK08638 threonine dehydratase 100.0 3.2E-53 6.9E-58 387.7 25.5 235 18-269 24-259 (333)
7 PRK08198 threonine dehydratase 100.0 2.4E-53 5.2E-58 398.4 25.2 235 18-269 19-254 (404)
8 PRK06382 threonine dehydratase 100.0 2.7E-53 5.8E-58 398.0 24.7 235 18-269 22-257 (406)
9 TIGR01127 ilvA_1Cterm threonin 100.0 3.3E-53 7.1E-58 394.6 24.8 231 22-269 1-232 (380)
10 PLN02550 threonine dehydratase 100.0 4.5E-53 9.7E-58 406.9 25.3 236 17-269 105-342 (591)
11 TIGR01124 ilvA_2Cterm threonin 100.0 7.5E-53 1.6E-57 402.5 23.6 237 16-269 12-250 (499)
12 TIGR02079 THD1 threonine dehyd 100.0 2.2E-52 4.8E-57 391.7 25.1 236 17-269 12-252 (409)
13 PRK07048 serine/threonine dehy 100.0 4E-52 8.8E-57 379.2 26.1 235 18-269 21-256 (321)
14 PRK06110 hypothetical protein; 100.0 3.4E-52 7.3E-57 379.8 25.5 234 18-269 18-253 (322)
15 PRK07476 eutB threonine dehydr 100.0 3.9E-52 8.4E-57 379.4 25.3 235 18-269 16-253 (322)
16 TIGR02991 ectoine_eutB ectoine 100.0 4.2E-52 9.2E-57 378.3 25.3 235 18-269 16-253 (317)
17 PRK09224 threonine dehydratase 100.0 4.9E-52 1.1E-56 398.1 25.8 237 16-269 15-253 (504)
18 PRK08639 threonine dehydratase 100.0 3.4E-52 7.3E-57 392.0 24.1 236 17-269 21-263 (420)
19 cd06448 L-Ser-dehyd Serine deh 100.0 1.5E-51 3.3E-56 374.5 25.4 231 21-268 1-240 (316)
20 PRK06450 threonine synthase; V 100.0 4.3E-51 9.3E-56 374.0 25.3 227 15-264 52-282 (338)
21 PRK06815 hypothetical protein; 100.0 7.1E-51 1.5E-55 370.4 25.2 234 19-269 18-253 (317)
22 PRK08197 threonine synthase; V 100.0 7.7E-51 1.7E-55 380.1 24.8 241 15-267 73-322 (394)
23 PRK07591 threonine synthase; V 100.0 1.2E-50 2.6E-55 381.3 25.8 242 15-268 83-333 (421)
24 PRK07334 threonine dehydratase 100.0 1.3E-50 2.9E-55 379.5 24.6 233 18-269 20-253 (403)
25 cd06447 D-Ser-dehyd D-Serine d 100.0 1.5E-50 3.3E-55 376.5 24.6 238 16-269 47-335 (404)
26 PRK08813 threonine dehydratase 100.0 1.8E-50 3.9E-55 369.9 24.2 224 18-269 36-260 (349)
27 cd01562 Thr-dehyd Threonine de 100.0 3E-50 6.4E-55 363.8 25.3 234 18-268 14-248 (304)
28 PRK08246 threonine dehydratase 100.0 6.3E-50 1.4E-54 363.0 26.3 230 17-269 19-249 (310)
29 PRK02991 D-serine dehydratase; 100.0 1.9E-50 4.1E-55 379.9 23.5 239 15-269 69-358 (441)
30 KOG1251|consensus 100.0 9.7E-51 2.1E-55 344.9 18.8 234 19-269 23-257 (323)
31 PRK06260 threonine synthase; V 100.0 1.4E-49 3E-54 372.0 25.2 241 14-267 60-309 (397)
32 PLN02569 threonine synthase 100.0 2.3E-49 5.1E-54 376.4 26.1 229 15-255 127-367 (484)
33 TIGR02035 D_Ser_am_lyase D-ser 100.0 2E-49 4.4E-54 371.7 25.1 238 16-269 65-353 (431)
34 cd01563 Thr-synth_1 Threonine 100.0 3.7E-49 8.1E-54 360.0 25.9 243 13-268 14-264 (324)
35 PRK06608 threonine dehydratase 100.0 2.4E-49 5.2E-54 362.8 24.7 231 18-268 20-254 (338)
36 PRK05638 threonine synthase; V 100.0 4.6E-49 1E-53 373.0 26.2 234 15-264 60-295 (442)
37 PRK08329 threonine synthase; V 100.0 1.7E-48 3.8E-53 358.6 24.6 226 15-266 58-285 (347)
38 PRK08206 diaminopropionate amm 100.0 1.3E-48 2.8E-53 365.1 23.8 242 18-269 41-314 (399)
39 TIGR01747 diampropi_NH3ly diam 100.0 3.4E-48 7.3E-53 359.2 23.9 239 20-269 21-295 (376)
40 PRK06381 threonine synthase; V 100.0 9.2E-48 2E-52 350.2 25.6 207 18-236 12-223 (319)
41 PRK06352 threonine synthase; V 100.0 8.8E-48 1.9E-52 354.4 23.6 231 14-266 21-254 (351)
42 PLN03013 cysteine synthase 100.0 1.3E-47 2.8E-52 357.3 23.8 195 15-226 117-321 (429)
43 PLN02565 cysteine synthase 100.0 9.8E-48 2.1E-52 350.0 22.1 196 14-226 8-213 (322)
44 TIGR03528 2_3_DAP_am_ly diamin 100.0 2E-47 4.3E-52 356.3 22.9 239 20-269 40-314 (396)
45 PRK06721 threonine synthase; R 100.0 7.7E-47 1.7E-51 348.3 25.2 236 13-268 20-260 (352)
46 PRK07409 threonine synthase; V 100.0 7.6E-47 1.6E-51 348.6 25.1 223 14-255 24-249 (353)
47 PLN02356 phosphateglycerate ki 100.0 6.4E-47 1.4E-51 352.5 24.7 234 15-269 47-339 (423)
48 PRK10717 cysteine synthase A; 100.0 3.3E-47 7.1E-52 348.1 20.4 221 14-254 6-242 (330)
49 cd01561 CBS_like CBS_like: Thi 100.0 2.3E-46 5E-51 336.9 23.9 190 20-226 1-201 (291)
50 COG0031 CysK Cysteine synthase 100.0 8.9E-47 1.9E-51 334.9 20.4 234 15-266 5-256 (300)
51 TIGR00260 thrC threonine synth 100.0 3E-46 6.4E-51 341.4 22.8 240 15-268 17-266 (328)
52 PRK11761 cysM cysteine synthas 100.0 2.8E-46 6E-51 337.1 21.9 230 17-266 8-248 (296)
53 TIGR01136 cysKM cysteine synth 100.0 4.6E-46 9.9E-51 336.3 22.2 194 19-229 5-207 (299)
54 TIGR03844 cysteate_syn cysteat 100.0 9.6E-46 2.1E-50 345.0 22.4 242 16-269 57-323 (398)
55 TIGR01138 cysM cysteine syntha 100.0 2.2E-45 4.8E-50 330.4 22.3 192 18-226 5-204 (290)
56 PLN02556 cysteine synthase/L-3 100.0 1E-45 2.2E-50 341.8 20.5 196 14-226 52-257 (368)
57 PLN00011 cysteine synthase 100.0 1.9E-45 4.1E-50 335.5 21.6 196 15-227 11-216 (323)
58 TIGR01139 cysK cysteine syntha 100.0 1.2E-45 2.7E-50 333.3 20.2 193 18-227 4-205 (298)
59 TIGR01137 cysta_beta cystathio 100.0 4.7E-43 1E-47 333.2 21.4 190 18-224 8-209 (454)
60 PF00291 PALP: Pyridoxal-phosp 100.0 2.4E-43 5.2E-48 318.1 18.3 235 15-268 1-249 (306)
61 cd00640 Trp-synth-beta_II Tryp 100.0 1.4E-42 3.1E-47 304.5 22.1 182 22-220 1-188 (244)
62 TIGR01415 trpB_rel pyridoxal-p 100.0 3.6E-41 7.8E-46 315.8 22.4 232 15-260 62-339 (419)
63 KOG1252|consensus 100.0 5.5E-42 1.2E-46 303.7 14.9 196 15-226 46-253 (362)
64 TIGR00263 trpB tryptophan synt 100.0 9.8E-41 2.1E-45 310.8 23.1 233 19-268 48-319 (385)
65 PRK04346 tryptophan synthase s 100.0 1.7E-40 3.7E-45 308.6 23.0 231 20-265 57-324 (397)
66 PRK03910 D-cysteine desulfhydr 100.0 2E-41 4.3E-46 310.1 16.0 199 14-228 8-226 (331)
67 PLN02618 tryptophan synthase, 100.0 1.3E-40 2.8E-45 310.0 21.4 227 21-263 66-334 (410)
68 cd06446 Trp-synth_B Tryptophan 100.0 1.9E-40 4.1E-45 307.2 20.8 235 20-268 33-303 (365)
69 PRK13028 tryptophan synthase s 100.0 5.6E-40 1.2E-44 305.6 22.7 232 20-266 61-329 (402)
70 KOG1481|consensus 100.0 6E-41 1.3E-45 289.8 14.6 243 7-268 35-304 (391)
71 TIGR01275 ACC_deam_rel pyridox 100.0 2.7E-40 5.9E-45 300.1 16.0 188 18-223 4-207 (311)
72 PRK12391 tryptophan synthase s 100.0 2E-39 4.3E-44 304.5 22.1 198 19-230 75-302 (427)
73 COG0498 ThrC Threonine synthas 100.0 7.3E-40 1.6E-44 303.6 18.1 235 14-266 69-310 (411)
74 PRK12390 1-aminocyclopropane-1 100.0 9.7E-40 2.1E-44 299.6 17.1 203 11-228 5-232 (337)
75 cd06449 ACCD Aminocyclopropane 100.0 2.9E-38 6.3E-43 286.4 21.3 227 22-266 1-267 (307)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 7.5E-38 1.6E-42 287.1 22.8 200 13-228 6-231 (337)
77 PRK13803 bifunctional phosphor 100.0 4.5E-38 9.8E-43 307.4 21.3 229 20-263 270-534 (610)
78 PRK13802 bifunctional indole-3 100.0 2.2E-37 4.8E-42 303.0 21.6 190 19-226 323-540 (695)
79 PRK14045 1-aminocyclopropane-1 100.0 1E-36 2.2E-41 278.7 21.1 234 13-266 13-276 (329)
80 PRK09225 threonine synthase; V 100.0 2E-30 4.3E-35 245.3 20.5 212 21-260 88-317 (462)
81 cd01560 Thr-synth_2 Threonine 100.0 4.4E-28 9.5E-33 229.4 21.6 216 21-264 87-324 (460)
82 COG0133 TrpB Tryptophan syntha 100.0 9.6E-28 2.1E-32 211.3 13.9 223 19-256 54-312 (396)
83 COG3048 DsdA D-serine dehydrat 99.9 2.7E-25 5.8E-30 194.8 14.3 233 21-269 78-361 (443)
84 COG1350 Predicted alternative 99.9 9.5E-24 2.1E-28 186.6 12.9 195 20-227 77-300 (432)
85 COG2515 Acd 1-aminocyclopropan 99.9 1.2E-22 2.5E-27 178.7 17.9 199 13-227 7-222 (323)
86 KOG1395|consensus 99.9 1.5E-23 3.3E-28 186.7 11.3 223 19-256 120-380 (477)
87 PF03808 Glyco_tran_WecB: Glyc 95.6 0.068 1.5E-06 44.4 7.9 99 80-191 13-114 (172)
88 cd06533 Glyco_transf_WecG_TagA 93.0 0.7 1.5E-05 38.3 8.4 99 80-191 11-112 (171)
89 TIGR00696 wecB_tagA_cpsF bacte 90.7 1.4 3E-05 36.8 7.8 96 80-189 13-111 (177)
90 KOG0025|consensus 87.2 4 8.6E-05 37.0 8.3 89 36-124 124-219 (354)
91 PF05368 NmrA: NmrA-like famil 85.6 4.7 0.0001 34.4 8.0 50 71-121 2-51 (233)
92 PRK03692 putative UDP-N-acetyl 84.9 5.2 0.00011 35.2 8.0 96 80-189 69-168 (243)
93 PRK08340 glucose-1-dehydrogena 82.4 14 0.00031 31.8 9.8 70 70-139 3-75 (259)
94 TIGR03366 HpnZ_proposed putati 82.3 12 0.00026 33.0 9.4 51 68-120 121-171 (280)
95 COG0800 Eda 2-keto-3-deoxy-6-p 81.8 20 0.00043 30.9 10.0 76 65-145 36-112 (211)
96 KOG1201|consensus 81.3 17 0.00037 32.9 9.9 74 68-142 39-116 (300)
97 PRK06720 hypothetical protein; 80.9 20 0.00044 29.4 9.7 70 68-137 17-90 (169)
98 PRK07814 short chain dehydroge 80.8 18 0.00039 31.3 9.9 32 68-99 11-42 (263)
99 PRK12823 benD 1,6-dihydroxycyc 80.8 13 0.00027 32.0 8.9 72 68-139 9-83 (260)
100 cd08230 glucose_DH Glucose deh 80.3 7.5 0.00016 35.5 7.6 51 68-118 173-223 (355)
101 PF04127 DFP: DNA / pantothena 80.2 11 0.00023 31.8 7.9 64 70-140 21-85 (185)
102 PF00106 adh_short: short chai 79.4 23 0.0005 27.9 9.5 70 70-139 3-79 (167)
103 PRK03562 glutathione-regulated 79.3 41 0.0009 33.7 13.0 57 68-127 400-456 (621)
104 TIGR00670 asp_carb_tr aspartat 79.0 12 0.00026 33.9 8.4 58 69-127 151-213 (301)
105 PF09837 DUF2064: Uncharacteri 78.9 14 0.00031 28.7 7.7 94 83-190 2-99 (122)
106 PRK12743 oxidoreductase; Provi 78.9 12 0.00026 32.2 8.2 71 69-139 4-79 (256)
107 PRK06182 short chain dehydroge 78.8 21 0.00045 31.1 9.7 68 68-138 4-72 (273)
108 PRK08643 acetoin reductase; Va 78.8 22 0.00048 30.4 9.8 70 68-137 3-76 (256)
109 PRK10669 putative cation:proto 78.5 48 0.001 32.6 13.1 53 68-123 417-469 (558)
110 PF00185 OTCace: Aspartate/orn 77.7 6.1 0.00013 32.2 5.5 62 76-145 12-81 (158)
111 PRK12826 3-ketoacyl-(acyl-carr 77.3 20 0.00042 30.4 8.9 54 68-121 7-61 (251)
112 PRK08993 2-deoxy-D-gluconate 3 76.9 25 0.00053 30.2 9.5 70 68-138 11-83 (253)
113 PRK03659 glutathione-regulated 76.8 66 0.0014 32.1 13.5 56 68-126 400-455 (601)
114 TIGR02825 B4_12hDH leukotriene 76.7 19 0.00041 32.2 9.0 50 68-120 139-189 (325)
115 TIGR01064 pyruv_kin pyruvate k 76.4 67 0.0015 31.1 13.1 129 83-224 262-408 (473)
116 PRK06935 2-deoxy-D-gluconate 3 75.6 24 0.00051 30.4 9.0 73 67-139 15-90 (258)
117 PRK08589 short chain dehydroge 75.5 19 0.00042 31.4 8.6 72 68-139 7-81 (272)
118 PRK12481 2-deoxy-D-gluconate 3 75.5 24 0.00052 30.3 9.1 71 68-139 9-82 (251)
119 TIGR01283 nifE nitrogenase mol 75.4 76 0.0016 30.4 13.2 65 67-131 325-391 (456)
120 PRK05993 short chain dehydroge 75.4 28 0.00061 30.4 9.6 66 69-137 6-72 (277)
121 PRK08628 short chain dehydroge 75.2 25 0.00053 30.2 9.0 70 68-137 8-80 (258)
122 PF00107 ADH_zinc_N: Zinc-bind 75.1 11 0.00024 28.7 6.1 38 80-120 3-40 (130)
123 PRK08085 gluconate 5-dehydroge 74.9 29 0.00063 29.7 9.4 70 68-137 10-83 (254)
124 PRK14478 nitrogenase molybdenu 74.8 75 0.0016 30.7 13.0 63 67-129 323-387 (475)
125 PF00764 Arginosuc_synth: Argi 74.6 65 0.0014 30.4 12.0 137 71-228 1-147 (388)
126 PRK07324 transaminase; Validat 74.0 40 0.00087 31.1 10.6 71 47-121 62-132 (373)
127 TIGR03206 benzo_BadH 2-hydroxy 73.7 40 0.00086 28.5 9.9 54 68-121 4-58 (250)
128 cd08294 leukotriene_B4_DH_like 73.6 26 0.00057 31.0 9.1 50 68-120 144-194 (329)
129 PRK07550 hypothetical protein; 73.5 50 0.0011 30.4 11.2 75 47-122 67-143 (386)
130 PF13561 adh_short_C2: Enoyl-( 73.4 13 0.00029 31.7 6.8 64 75-138 4-70 (241)
131 TIGR03538 DapC_gpp succinyldia 72.9 43 0.00094 31.0 10.6 52 70-121 92-144 (393)
132 PF08659 KR: KR domain; Inter 72.9 25 0.00053 29.0 8.1 69 70-138 3-79 (181)
133 PRK07109 short chain dehydroge 72.8 21 0.00047 32.5 8.4 72 68-139 9-84 (334)
134 PRK12828 short chain dehydroge 72.8 28 0.00061 29.1 8.7 71 68-138 8-80 (239)
135 PTZ00354 alcohol dehydrogenase 72.7 38 0.00082 30.0 9.9 50 70-122 144-193 (334)
136 PRK08278 short chain dehydroge 72.7 35 0.00075 29.8 9.5 70 68-137 7-87 (273)
137 PRK08226 short chain dehydroge 72.4 25 0.00054 30.2 8.4 71 68-138 7-80 (263)
138 PRK08217 fabG 3-ketoacyl-(acyl 72.2 42 0.0009 28.3 9.7 54 68-121 6-60 (253)
139 cd05188 MDR Medium chain reduc 71.9 60 0.0013 27.4 12.2 43 71-117 139-181 (271)
140 TIGR01832 kduD 2-deoxy-D-gluco 71.6 33 0.00072 29.1 8.9 70 68-138 6-78 (248)
141 PRK05650 short chain dehydroge 71.4 42 0.0009 29.1 9.6 52 70-121 3-55 (270)
142 PRK06483 dihydromonapterin red 71.3 39 0.00085 28.5 9.3 69 69-139 4-73 (236)
143 PRK09242 tropinone reductase; 71.0 51 0.0011 28.2 10.1 32 68-99 10-41 (257)
144 PRK06463 fabG 3-ketoacyl-(acyl 70.9 46 0.00099 28.5 9.7 70 68-139 8-78 (255)
145 TIGR03201 dearomat_had 6-hydro 70.8 30 0.00066 31.4 9.0 50 68-120 167-216 (349)
146 PF00070 Pyr_redox: Pyridine n 70.5 31 0.00067 24.1 7.1 49 71-119 2-59 (80)
147 PF01210 NAD_Gly3P_dh_N: NAD-d 70.5 6.8 0.00015 31.7 4.1 39 71-112 2-40 (157)
148 PF13460 NAD_binding_10: NADH( 70.4 16 0.00035 29.5 6.4 46 71-121 2-47 (183)
149 COG0300 DltE Short-chain dehyd 70.3 29 0.00063 31.0 8.3 71 67-137 6-81 (265)
150 PRK12937 short chain dehydroge 70.2 38 0.00083 28.5 9.0 71 68-138 6-81 (245)
151 PRK08017 oxidoreductase; Provi 69.4 43 0.00093 28.5 9.2 63 69-134 4-67 (256)
152 cd08295 double_bond_reductase_ 69.4 37 0.0008 30.6 9.1 47 70-119 155-202 (338)
153 PRK05693 short chain dehydroge 69.3 48 0.001 28.8 9.6 67 69-138 3-70 (274)
154 PRK07832 short chain dehydroge 69.2 39 0.00084 29.3 9.0 30 70-99 3-32 (272)
155 PRK07478 short chain dehydroge 69.1 45 0.00097 28.5 9.3 72 68-139 7-82 (254)
156 PF01041 DegT_DnrJ_EryC1: DegT 68.9 17 0.00037 33.5 6.9 55 67-121 39-93 (363)
157 PRK13394 3-hydroxybutyrate deh 68.8 43 0.00094 28.5 9.1 68 68-135 8-79 (262)
158 PRK06348 aspartate aminotransf 68.7 64 0.0014 29.8 10.8 53 68-121 89-141 (384)
159 TIGR00561 pntA NAD(P) transhyd 68.7 34 0.00074 33.5 9.0 50 69-121 165-214 (511)
160 COG0623 FabI Enoyl-[acyl-carri 68.6 24 0.00053 31.0 7.1 15 190-204 121-135 (259)
161 PRK07097 gluconate 5-dehydroge 68.6 34 0.00074 29.5 8.5 71 68-138 11-85 (265)
162 PRK07478 short chain dehydroge 68.5 30 0.00064 29.6 8.0 11 212-222 179-189 (254)
163 PRK06079 enoyl-(acyl carrier p 68.4 27 0.00059 30.0 7.8 71 69-139 9-82 (252)
164 PRK06114 short chain dehydroge 68.0 51 0.0011 28.2 9.4 71 68-138 9-84 (254)
165 PRK08303 short chain dehydroge 68.0 41 0.00089 30.2 9.0 72 68-139 9-94 (305)
166 PRK07201 short chain dehydroge 68.0 38 0.00083 33.6 9.6 71 69-139 373-447 (657)
167 TIGR02822 adh_fam_2 zinc-bindi 67.9 25 0.00055 31.8 7.7 49 68-119 166-214 (329)
168 PRK08261 fabG 3-ketoacyl-(acyl 67.9 43 0.00094 31.7 9.6 71 68-138 211-282 (450)
169 PRK07523 gluconate 5-dehydroge 67.8 39 0.00084 28.9 8.6 70 68-137 11-84 (255)
170 cd08231 MDR_TM0436_like Hypoth 67.6 26 0.00057 31.8 7.9 49 68-119 178-227 (361)
171 cd08239 THR_DH_like L-threonin 67.6 44 0.00094 30.0 9.2 51 68-121 164-215 (339)
172 cd08301 alcohol_DH_plants Plan 67.5 44 0.00095 30.6 9.4 51 68-120 188-238 (369)
173 PRK08159 enoyl-(acyl carrier p 67.0 48 0.001 29.0 9.1 71 69-139 12-87 (272)
174 PRK06128 oxidoreductase; Provi 67.0 54 0.0012 29.0 9.6 72 68-139 56-133 (300)
175 PRK12745 3-ketoacyl-(acyl-carr 66.8 50 0.0011 28.1 9.1 71 69-139 4-79 (256)
176 PRK12744 short chain dehydroge 66.7 43 0.00094 28.7 8.7 71 68-138 9-87 (257)
177 cd08300 alcohol_DH_class_III c 66.6 45 0.00098 30.5 9.2 51 68-120 187-237 (368)
178 PF00107 ADH_zinc_N: Zinc-bind 66.6 26 0.00057 26.5 6.6 72 107-199 7-79 (130)
179 PRK05557 fabG 3-ketoacyl-(acyl 66.5 54 0.0012 27.5 9.1 69 68-136 6-79 (248)
180 PRK12384 sorbitol-6-phosphate 66.3 57 0.0012 27.8 9.4 31 69-99 4-34 (259)
181 PRK08862 short chain dehydroge 66.3 37 0.00081 28.9 8.1 72 68-139 6-81 (227)
182 PRK10538 malonic semialdehyde 66.3 40 0.00086 28.8 8.3 65 70-137 3-71 (248)
183 COG1063 Tdh Threonine dehydrog 66.2 1.1E+02 0.0024 28.1 12.9 52 69-122 170-222 (350)
184 cd08284 FDH_like_2 Glutathione 66.2 60 0.0013 29.0 9.8 49 68-118 168-216 (344)
185 PRK08862 short chain dehydroge 65.9 54 0.0012 27.9 9.0 82 94-188 7-93 (227)
186 PRK06836 aspartate aminotransf 65.9 79 0.0017 29.3 10.8 54 68-122 96-149 (394)
187 cd01075 NAD_bind_Leu_Phe_Val_D 65.9 50 0.0011 27.9 8.6 63 53-118 7-76 (200)
188 PF04122 CW_binding_2: Putativ 65.9 48 0.001 23.9 8.7 75 47-122 4-81 (92)
189 KOG1205|consensus 65.7 66 0.0014 29.0 9.7 79 67-145 12-98 (282)
190 TIGR03540 DapC_direct LL-diami 65.5 46 0.001 30.6 9.1 51 70-121 93-143 (383)
191 PRK05867 short chain dehydroge 65.3 50 0.0011 28.2 8.8 72 68-139 10-85 (253)
192 PLN03154 putative allyl alcoho 65.2 48 0.001 30.2 9.1 50 68-120 159-210 (348)
193 PRK06841 short chain dehydroge 65.2 46 0.00099 28.3 8.5 68 68-137 16-86 (255)
194 PRK07791 short chain dehydroge 64.9 48 0.001 29.2 8.8 72 68-139 7-91 (286)
195 PRK08277 D-mannonate oxidoredu 64.7 47 0.001 28.8 8.6 70 68-137 11-84 (278)
196 cd08281 liver_ADH_like1 Zinc-d 64.5 58 0.0013 29.8 9.5 51 68-120 192-242 (371)
197 cd08277 liver_alcohol_DH_like 64.2 1.2E+02 0.0025 27.8 12.6 50 68-119 185-234 (365)
198 PRK07097 gluconate 5-dehydroge 64.1 62 0.0013 27.9 9.2 86 93-189 11-98 (265)
199 PRK12938 acetyacetyl-CoA reduc 63.9 45 0.00097 28.2 8.2 70 68-137 4-78 (246)
200 PRK05876 short chain dehydroge 63.7 51 0.0011 28.9 8.7 72 68-139 7-82 (275)
201 cd08205 RuBisCO_IV_RLP Ribulos 63.5 1.3E+02 0.0028 28.1 13.0 65 38-102 162-234 (367)
202 PRK06139 short chain dehydroge 63.5 41 0.00089 30.7 8.2 70 68-137 8-81 (330)
203 PRK05867 short chain dehydroge 63.5 45 0.00098 28.5 8.2 12 211-222 182-193 (253)
204 PF07279 DUF1442: Protein of u 63.2 47 0.001 28.7 7.8 62 55-116 29-95 (218)
205 PRK09880 L-idonate 5-dehydroge 62.9 48 0.001 30.0 8.6 51 68-120 170-220 (343)
206 PRK05786 fabG 3-ketoacyl-(acyl 62.7 62 0.0013 27.1 8.8 33 68-100 6-38 (238)
207 PRK07454 short chain dehydroge 62.6 51 0.0011 27.8 8.3 71 68-138 7-81 (241)
208 COG1922 WecG Teichoic acid bio 62.5 30 0.00066 30.6 6.8 107 80-199 72-182 (253)
209 PRK08068 transaminase; Reviewe 62.5 99 0.0021 28.5 10.8 51 70-121 96-146 (389)
210 PRK07035 short chain dehydroge 62.5 59 0.0013 27.6 8.7 72 68-139 9-84 (252)
211 PF11814 DUF3335: Peptidase_C3 62.3 39 0.00084 29.0 7.2 34 68-101 42-77 (207)
212 PRK07831 short chain dehydroge 62.2 88 0.0019 26.8 9.8 30 68-97 18-48 (262)
213 PRK06953 short chain dehydroge 62.1 71 0.0015 26.6 9.0 59 69-130 3-62 (222)
214 PRK06947 glucose-1-dehydrogena 62.0 48 0.001 28.1 8.0 69 69-137 4-77 (248)
215 cd08296 CAD_like Cinnamyl alco 62.0 42 0.0009 30.1 8.0 49 68-119 164-212 (333)
216 cd08258 Zn_ADH4 Alcohol dehydr 61.8 36 0.00079 30.2 7.5 46 70-116 167-212 (306)
217 PRK09147 succinyldiaminopimela 61.8 1.3E+02 0.0029 27.7 11.9 52 70-121 92-145 (396)
218 TIGR01831 fabG_rel 3-oxoacyl-( 61.7 54 0.0012 27.6 8.3 69 71-139 2-75 (239)
219 PRK07067 sorbitol dehydrogenas 61.5 51 0.0011 28.2 8.1 69 68-138 7-78 (257)
220 PRK07666 fabG 3-ketoacyl-(acyl 61.4 66 0.0014 27.1 8.7 70 68-137 8-81 (239)
221 cd08240 6_hydroxyhexanoate_dh_ 61.4 1.2E+02 0.0027 27.2 12.6 50 68-119 176-225 (350)
222 COG2242 CobL Precorrin-6B meth 61.3 69 0.0015 27.1 8.4 118 36-202 7-124 (187)
223 PF02826 2-Hacid_dh_C: D-isome 61.3 91 0.002 25.6 9.3 119 67-222 35-155 (178)
224 TIGR02819 fdhA_non_GSH formald 61.2 95 0.0021 29.0 10.4 50 68-119 186-235 (393)
225 PRK08063 enoyl-(acyl carrier p 61.2 76 0.0016 26.8 9.1 70 68-137 5-79 (250)
226 PRK08936 glucose-1-dehydrogena 61.0 79 0.0017 27.1 9.3 72 68-139 8-84 (261)
227 PRK07666 fabG 3-ketoacyl-(acyl 61.0 87 0.0019 26.3 9.4 86 93-189 8-95 (239)
228 TIGR02818 adh_III_F_hyde S-(hy 60.8 47 0.001 30.5 8.2 50 68-119 186-235 (368)
229 cd08274 MDR9 Medium chain dehy 60.7 42 0.0009 30.1 7.7 47 70-120 181-227 (350)
230 PRK07806 short chain dehydroge 60.5 74 0.0016 26.9 9.0 70 68-137 7-81 (248)
231 cd08256 Zn_ADH2 Alcohol dehydr 60.3 51 0.0011 29.7 8.3 50 68-119 175-224 (350)
232 TIGR02415 23BDH acetoin reduct 60.3 68 0.0015 27.2 8.7 68 70-137 3-74 (254)
233 cd08297 CAD3 Cinnamyl alcohol 60.2 1.3E+02 0.0027 26.9 12.2 48 70-120 169-216 (341)
234 PRK06603 enoyl-(acyl carrier p 60.0 73 0.0016 27.5 8.9 71 69-139 10-85 (260)
235 PRK06200 2,3-dihydroxy-2,3-dih 59.9 57 0.0012 28.0 8.2 69 68-139 7-79 (263)
236 PRK08177 short chain dehydroge 59.9 67 0.0015 26.9 8.5 64 69-134 3-67 (225)
237 PLN02740 Alcohol dehydrogenase 59.8 49 0.0011 30.5 8.2 50 68-119 199-248 (381)
238 PRK07681 aspartate aminotransf 59.7 1.2E+02 0.0027 28.0 10.9 52 69-121 94-145 (399)
239 PRK09257 aromatic amino acid a 59.6 1.5E+02 0.0032 27.5 11.8 77 43-121 65-148 (396)
240 PRK07326 short chain dehydroge 59.6 66 0.0014 26.9 8.4 32 68-99 7-38 (237)
241 PRK12827 short chain dehydroge 59.5 90 0.0019 26.2 9.3 54 68-121 7-65 (249)
242 PLN00175 aminotransferase fami 59.4 75 0.0016 29.8 9.4 51 70-121 117-167 (413)
243 PRK12935 acetoacetyl-CoA reduc 59.3 66 0.0014 27.2 8.4 70 68-137 7-81 (247)
244 PRK06172 short chain dehydroge 59.2 70 0.0015 27.2 8.6 70 68-137 8-81 (253)
245 PRK06035 3-hydroxyacyl-CoA deh 59.2 1.3E+02 0.0028 26.7 10.9 30 70-99 5-34 (291)
246 PRK12743 oxidoreductase; Provi 59.2 92 0.002 26.6 9.4 75 104-189 16-91 (256)
247 COG3635 Predicted phosphoglyce 59.2 33 0.00072 32.2 6.6 119 84-237 239-364 (408)
248 PRK08265 short chain dehydroge 59.0 66 0.0014 27.7 8.4 70 68-139 7-79 (261)
249 PRK06198 short chain dehydroge 58.9 96 0.0021 26.4 9.4 72 68-139 7-83 (260)
250 PRK06138 short chain dehydroge 58.8 75 0.0016 26.8 8.7 69 68-137 6-78 (252)
251 PRK07035 short chain dehydroge 58.7 82 0.0018 26.7 9.0 85 93-188 9-95 (252)
252 PRK06949 short chain dehydroge 58.6 65 0.0014 27.4 8.3 70 68-137 10-83 (258)
253 cd08270 MDR4 Medium chain dehy 58.6 52 0.0011 28.7 7.9 46 70-118 136-181 (305)
254 PRK05839 hypothetical protein; 58.3 1.2E+02 0.0026 27.9 10.5 76 46-122 59-138 (374)
255 TIGR01182 eda Entner-Doudoroff 58.3 1.2E+02 0.0026 26.0 14.8 129 72-234 39-170 (204)
256 PRK05866 short chain dehydroge 57.9 67 0.0015 28.5 8.5 71 68-138 41-115 (293)
257 COG0436 Aspartate/tyrosine/aro 57.9 72 0.0016 30.0 9.0 96 47-145 65-171 (393)
258 PRK08594 enoyl-(acyl carrier p 57.8 93 0.002 26.8 9.2 72 68-139 8-86 (257)
259 cd08242 MDR_like Medium chain 57.7 52 0.0011 29.1 7.7 49 68-119 156-204 (319)
260 PRK06194 hypothetical protein; 57.6 82 0.0018 27.4 8.9 70 68-137 7-80 (287)
261 PRK06181 short chain dehydroge 57.6 73 0.0016 27.3 8.5 69 69-137 3-75 (263)
262 PRK08589 short chain dehydroge 57.5 72 0.0016 27.7 8.5 85 93-189 7-93 (272)
263 PRK06108 aspartate aminotransf 57.4 1.5E+02 0.0033 26.9 11.5 75 46-121 60-136 (382)
264 cd08243 quinone_oxidoreductase 57.3 62 0.0013 28.2 8.1 46 71-119 147-192 (320)
265 KOG2862|consensus 57.2 1.1E+02 0.0023 28.4 9.3 79 67-145 67-150 (385)
266 TIGR03451 mycoS_dep_FDH mycoth 57.2 58 0.0013 29.6 8.1 50 68-119 177-226 (358)
267 PRK05872 short chain dehydroge 56.8 66 0.0014 28.5 8.2 69 68-139 10-84 (296)
268 PRK06172 short chain dehydroge 56.6 1.1E+02 0.0023 26.0 9.3 83 93-188 8-94 (253)
269 cd08246 crotonyl_coA_red croto 56.6 57 0.0012 30.1 8.0 49 68-119 194-243 (393)
270 PRK09135 pteridine reductase; 56.4 88 0.0019 26.2 8.7 34 68-101 7-40 (249)
271 cd01968 Nitrogenase_NifE_I Nit 56.4 1.8E+02 0.0038 27.4 13.6 63 67-129 286-350 (410)
272 PLN02586 probable cinnamyl alc 56.3 66 0.0014 29.5 8.3 52 68-121 184-235 (360)
273 COG1751 Uncharacterized conser 56.3 89 0.0019 25.7 7.8 74 46-121 7-90 (186)
274 PRK07231 fabG 3-ketoacyl-(acyl 56.2 97 0.0021 26.0 8.9 69 68-137 6-78 (251)
275 PRK14030 glutamate dehydrogena 56.2 52 0.0011 31.6 7.7 47 52-98 208-258 (445)
276 PRK09134 short chain dehydroge 56.1 1.1E+02 0.0023 26.2 9.2 69 68-136 10-83 (258)
277 cd08298 CAD2 Cinnamyl alcohol 56.1 52 0.0011 29.2 7.5 47 68-117 168-214 (329)
278 PRK07792 fabG 3-ketoacyl-(acyl 56.1 81 0.0018 28.1 8.7 66 68-133 13-83 (306)
279 PRK07904 short chain dehydroge 56.0 1.2E+02 0.0025 26.2 9.5 68 68-135 9-83 (253)
280 PRK06505 enoyl-(acyl carrier p 55.9 84 0.0018 27.4 8.7 72 68-139 8-84 (271)
281 PRK06139 short chain dehydroge 55.9 69 0.0015 29.2 8.3 85 93-188 8-94 (330)
282 PRK08912 hypothetical protein; 55.7 1.3E+02 0.0027 27.7 10.2 75 46-121 62-139 (387)
283 cd08292 ETR_like_2 2-enoyl thi 55.7 89 0.0019 27.5 8.9 49 68-119 140-189 (324)
284 PRK05653 fabG 3-ketoacyl-(acyl 55.6 52 0.0011 27.5 7.1 53 69-121 7-60 (246)
285 PRK12939 short chain dehydroge 55.6 75 0.0016 26.7 8.1 54 68-121 8-62 (250)
286 PRK08354 putative aminotransfe 55.5 1.5E+02 0.0033 26.3 10.6 55 70-126 56-110 (311)
287 PRK07774 short chain dehydroge 55.4 1E+02 0.0022 26.0 8.9 72 68-139 7-82 (250)
288 PRK07825 short chain dehydroge 55.3 1.1E+02 0.0023 26.5 9.2 68 68-138 6-76 (273)
289 cd05279 Zn_ADH1 Liver alcohol 55.3 1.7E+02 0.0036 26.7 11.9 47 69-117 185-231 (365)
290 PTZ00377 alanine aminotransfer 55.3 1.6E+02 0.0035 28.2 11.1 53 69-121 139-191 (481)
291 TIGR03325 BphB_TodD cis-2,3-di 55.3 73 0.0016 27.4 8.1 69 68-139 6-78 (262)
292 PRK09424 pntA NAD(P) transhydr 55.2 48 0.001 32.5 7.4 51 68-121 165-215 (509)
293 PRK12771 putative glutamate sy 55.2 29 0.00063 34.1 6.1 53 67-119 136-206 (564)
294 PRK09730 putative NAD(P)-bindi 55.1 1E+02 0.0022 25.9 8.8 69 69-137 3-76 (247)
295 cd08276 MDR7 Medium chain dehy 54.9 80 0.0017 27.8 8.5 49 68-119 161-209 (336)
296 PRK05866 short chain dehydroge 54.9 1.1E+02 0.0023 27.1 9.3 86 93-189 41-128 (293)
297 TIGR00877 purD phosphoribosyla 54.9 1.8E+02 0.004 27.1 11.8 27 72-98 4-30 (423)
298 PRK07063 short chain dehydroge 54.9 1E+02 0.0022 26.3 8.9 72 68-139 8-85 (260)
299 PF00155 Aminotran_1_2: Aminot 54.5 88 0.0019 28.2 8.8 52 70-121 70-121 (363)
300 PRK06290 aspartate aminotransf 54.5 87 0.0019 29.4 9.0 51 70-121 108-158 (410)
301 PRK06113 7-alpha-hydroxysteroi 54.4 92 0.002 26.5 8.6 71 68-138 12-86 (255)
302 PRK06101 short chain dehydroge 54.4 99 0.0021 26.2 8.7 62 69-133 3-67 (240)
303 PRK05876 short chain dehydroge 54.3 1.2E+02 0.0025 26.6 9.3 85 93-188 7-93 (275)
304 PRK07392 threonine-phosphate d 54.3 93 0.002 28.3 9.0 52 69-122 75-126 (360)
305 PRK08416 7-alpha-hydroxysteroi 54.2 99 0.0021 26.5 8.7 72 68-139 9-86 (260)
306 cd00401 AdoHcyase S-adenosyl-L 54.1 37 0.00079 32.4 6.3 49 67-118 201-249 (413)
307 PRK06500 short chain dehydroge 54.1 1.1E+02 0.0024 25.7 8.9 67 68-137 7-77 (249)
308 PRK05717 oxidoreductase; Valid 53.9 81 0.0018 26.9 8.1 70 68-139 11-83 (255)
309 PRK06425 histidinol-phosphate 53.9 81 0.0017 28.5 8.4 52 68-122 57-108 (332)
310 PRK05562 precorrin-2 dehydroge 53.9 1.2E+02 0.0026 26.3 9.0 116 68-202 25-155 (223)
311 PRK10490 sensor protein KdpD; 53.8 1.8E+02 0.004 30.5 11.9 105 71-187 254-375 (895)
312 PRK12825 fabG 3-ketoacyl-(acyl 53.8 1E+02 0.0022 25.7 8.6 69 69-137 8-81 (249)
313 TIGR03537 DapC succinyldiamino 53.8 1.7E+02 0.0037 26.4 11.9 75 45-121 34-115 (350)
314 PRK07309 aromatic amino acid a 53.8 1.1E+02 0.0024 28.3 9.5 53 69-122 92-144 (391)
315 PRK08159 enoyl-(acyl carrier p 53.8 96 0.0021 27.1 8.7 14 211-224 183-196 (272)
316 PRK07114 keto-hydroxyglutarate 53.7 1.5E+02 0.0032 25.7 14.1 58 168-234 121-182 (222)
317 PRK07677 short chain dehydroge 53.7 1E+02 0.0022 26.3 8.7 71 69-139 3-77 (252)
318 PF01262 AlaDh_PNT_C: Alanine 53.7 86 0.0019 25.4 7.8 51 68-121 20-70 (168)
319 PRK07683 aminotransferase A; V 53.7 92 0.002 28.8 8.9 52 70-122 91-142 (387)
320 PRK07069 short chain dehydroge 53.5 92 0.002 26.2 8.4 31 70-100 2-32 (251)
321 COG0137 ArgG Argininosuccinate 53.5 1.9E+02 0.0042 27.3 10.7 53 69-122 6-66 (403)
322 COG2894 MinD Septum formation 53.4 89 0.0019 27.5 7.9 121 82-224 22-149 (272)
323 PRK08642 fabG 3-ketoacyl-(acyl 53.3 1E+02 0.0022 26.0 8.6 69 68-137 6-77 (253)
324 COG2130 Putative NADP-dependen 53.3 1E+02 0.0023 28.3 8.6 64 53-119 136-201 (340)
325 PRK07985 oxidoreductase; Provi 53.3 97 0.0021 27.4 8.7 72 68-139 50-127 (294)
326 PRK08277 D-mannonate oxidoredu 53.2 1.1E+02 0.0023 26.5 8.9 85 93-188 11-97 (278)
327 PRK07677 short chain dehydroge 53.1 1.2E+02 0.0027 25.7 9.2 74 103-188 14-88 (252)
328 PRK06701 short chain dehydroge 53.1 1.3E+02 0.0027 26.6 9.4 70 68-137 47-121 (290)
329 PRK07791 short chain dehydroge 52.9 1E+02 0.0022 27.1 8.7 86 93-189 7-103 (286)
330 PRK08213 gluconate 5-dehydroge 52.7 97 0.0021 26.4 8.4 70 68-137 13-86 (259)
331 cd08291 ETR_like_1 2-enoyl thi 52.7 1E+02 0.0023 27.3 8.9 50 69-121 145-195 (324)
332 TIGR01282 nifD nitrogenase mol 52.7 2.2E+02 0.0047 27.5 11.5 66 67-132 334-401 (466)
333 PF13561 adh_short_C2: Enoyl-( 52.7 70 0.0015 27.1 7.5 12 212-223 170-181 (241)
334 PRK07062 short chain dehydroge 52.6 1.2E+02 0.0026 25.9 9.1 72 68-139 9-86 (265)
335 PRK05826 pyruvate kinase; Prov 52.2 2.1E+02 0.0046 27.7 11.2 125 83-223 264-407 (465)
336 PRK12429 3-hydroxybutyrate deh 52.0 1.2E+02 0.0026 25.6 8.8 70 68-137 5-78 (258)
337 COG0399 WecE Predicted pyridox 52.0 88 0.0019 29.4 8.4 58 65-122 46-103 (374)
338 PRK07774 short chain dehydroge 51.9 1.4E+02 0.003 25.2 9.2 84 93-189 7-94 (250)
339 PLN02253 xanthoxin dehydrogena 51.9 93 0.002 26.9 8.3 71 68-139 19-93 (280)
340 PRK06057 short chain dehydroge 51.9 1.3E+02 0.0028 25.6 9.1 67 68-137 8-76 (255)
341 PRK07890 short chain dehydroge 51.9 1E+02 0.0022 26.2 8.4 71 68-138 6-80 (258)
342 PLN02514 cinnamyl-alcohol dehy 51.8 97 0.0021 28.2 8.7 52 68-121 181-232 (357)
343 cd08254 hydroxyacyl_CoA_DH 6-h 51.7 1.7E+02 0.0037 25.8 11.8 49 69-120 167-215 (338)
344 PRK06482 short chain dehydroge 51.7 77 0.0017 27.4 7.7 66 69-137 4-73 (276)
345 PRK06077 fabG 3-ketoacyl-(acyl 51.6 97 0.0021 26.1 8.2 69 68-136 7-80 (252)
346 PRK06180 short chain dehydroge 51.4 86 0.0019 27.2 8.0 67 68-137 5-75 (277)
347 PRK06505 enoyl-(acyl carrier p 51.3 1.4E+02 0.0031 25.9 9.4 85 93-189 8-96 (271)
348 cd08260 Zn_ADH6 Alcohol dehydr 51.3 1.4E+02 0.0031 26.6 9.7 45 69-116 167-211 (345)
349 PRK10309 galactitol-1-phosphat 51.2 68 0.0015 28.9 7.5 50 68-119 161-210 (347)
350 cd05280 MDR_yhdh_yhfp Yhdh and 51.2 80 0.0017 27.7 7.9 48 70-120 150-197 (325)
351 PRK06124 gluconate 5-dehydroge 51.2 1.5E+02 0.0033 25.1 9.4 70 68-137 12-85 (256)
352 cd05284 arabinose_DH_like D-ar 51.2 85 0.0018 28.0 8.1 48 69-119 169-217 (340)
353 PRK05396 tdh L-threonine 3-deh 51.2 67 0.0015 28.8 7.5 50 68-119 164-213 (341)
354 cd08210 RLP_RrRLP Ribulose bis 51.0 2.1E+02 0.0046 26.7 14.8 65 38-102 157-229 (364)
355 COG0078 ArgF Ornithine carbamo 50.9 75 0.0016 29.0 7.4 52 71-122 157-214 (310)
356 PRK07178 pyruvate carboxylase 50.9 90 0.0019 30.0 8.6 32 69-100 3-34 (472)
357 PRK07102 short chain dehydroge 50.9 1.1E+02 0.0024 25.8 8.4 68 69-136 3-75 (243)
358 TIGR01830 3oxo_ACP_reduc 3-oxo 50.9 1.3E+02 0.0029 24.9 8.9 51 71-121 2-54 (239)
359 PRK07454 short chain dehydroge 50.7 1.5E+02 0.0032 24.9 9.4 84 93-189 7-94 (241)
360 TIGR01751 crot-CoA-red crotony 50.6 68 0.0015 29.8 7.5 47 71-120 194-240 (398)
361 PRK06924 short chain dehydroge 50.5 88 0.0019 26.5 7.8 67 69-136 3-72 (251)
362 PRK06358 threonine-phosphate d 50.5 1.1E+02 0.0024 27.8 8.9 51 68-121 71-121 (354)
363 TIGR01316 gltA glutamate synth 50.4 63 0.0014 30.8 7.4 52 68-119 272-328 (449)
364 cd08293 PTGR2 Prostaglandin re 50.4 98 0.0021 27.7 8.4 50 69-121 156-208 (345)
365 TIGR02415 23BDH acetoin reduct 50.3 1.5E+02 0.0033 25.0 9.3 71 104-188 14-87 (254)
366 cd08233 butanediol_DH_like (2R 50.3 1.9E+02 0.0041 26.0 12.5 51 68-120 173-223 (351)
367 PRK07775 short chain dehydroge 50.3 1.2E+02 0.0027 26.2 8.8 69 68-136 11-83 (274)
368 PRK07533 enoyl-(acyl carrier p 50.1 1.3E+02 0.0029 25.8 8.9 83 93-187 11-97 (258)
369 PRK08251 short chain dehydroge 50.1 1.2E+02 0.0026 25.5 8.6 70 69-138 4-79 (248)
370 PRK11706 TDP-4-oxo-6-deoxy-D-g 50.0 1.3E+02 0.0028 27.8 9.3 54 68-121 46-99 (375)
371 smart00822 PKS_KR This enzymat 50.0 1.2E+02 0.0025 23.4 8.4 53 70-122 3-60 (180)
372 PRK08415 enoyl-(acyl carrier p 50.0 1.4E+02 0.003 26.2 9.0 71 69-139 7-82 (274)
373 cd08288 MDR_yhdh Yhdh putative 49.8 80 0.0017 27.8 7.6 47 71-120 151-197 (324)
374 TIGR02685 pter_reduc_Leis pter 49.8 1.4E+02 0.0031 25.7 9.1 30 70-99 4-33 (267)
375 PRK05166 histidinol-phosphate 49.8 2E+02 0.0044 26.2 10.5 53 69-122 89-141 (371)
376 PRK12748 3-ketoacyl-(acyl-carr 49.7 1.4E+02 0.0031 25.4 9.0 71 69-139 7-94 (256)
377 PRK06179 short chain dehydroge 49.6 68 0.0015 27.6 7.0 66 69-139 6-72 (270)
378 cd05283 CAD1 Cinnamyl alcohol 49.5 85 0.0018 28.1 7.8 49 69-120 171-219 (337)
379 PRK07366 succinyldiaminopimela 49.5 1.3E+02 0.0029 27.6 9.3 50 70-121 94-144 (388)
380 PRK12859 3-ketoacyl-(acyl-carr 49.5 99 0.0021 26.5 8.0 72 68-139 7-95 (256)
381 PRK07577 short chain dehydroge 49.4 1.1E+02 0.0024 25.5 8.1 61 69-137 5-66 (234)
382 COG1064 AdhP Zn-dependent alco 49.4 1.1E+02 0.0025 28.3 8.5 53 68-123 167-219 (339)
383 TIGR02817 adh_fam_1 zinc-bindi 49.3 1.2E+02 0.0026 26.9 8.8 46 71-119 153-199 (336)
384 cd08287 FDH_like_ADH3 formalde 49.3 90 0.002 27.9 8.0 50 68-119 169-218 (345)
385 PRK06124 gluconate 5-dehydroge 49.2 1.2E+02 0.0026 25.7 8.5 50 47-98 17-66 (256)
386 PRK12939 short chain dehydroge 49.1 1E+02 0.0022 25.9 7.9 84 93-189 8-95 (250)
387 PRK08462 biotin carboxylase; V 48.9 1.2E+02 0.0026 28.7 9.1 30 69-98 5-34 (445)
388 TIGR01140 L_thr_O3P_dcar L-thr 48.9 1.6E+02 0.0034 26.5 9.5 54 69-126 65-118 (330)
389 PRK05854 short chain dehydroge 48.9 1.2E+02 0.0025 27.2 8.6 72 68-139 15-92 (313)
390 cd08289 MDR_yhfp_like Yhfp put 48.7 1E+02 0.0023 27.1 8.2 47 70-119 150-196 (326)
391 PTZ00079 NADP-specific glutama 48.7 73 0.0016 30.7 7.4 48 52-99 217-268 (454)
392 PRK12414 putative aminotransfe 48.7 1.4E+02 0.003 27.5 9.3 51 70-121 92-142 (384)
393 PRK05565 fabG 3-ketoacyl-(acyl 48.7 1.2E+02 0.0026 25.4 8.2 70 68-137 6-80 (247)
394 PTZ00376 aspartate aminotransf 48.6 2.3E+02 0.0049 26.3 12.2 75 45-121 70-152 (404)
395 COG0540 PyrB Aspartate carbamo 48.6 2.2E+02 0.0047 26.1 10.6 133 71-224 53-196 (316)
396 PRK04284 ornithine carbamoyltr 48.5 1.2E+02 0.0025 28.0 8.5 50 77-127 166-221 (332)
397 PRK07984 enoyl-(acyl carrier p 48.4 1.4E+02 0.003 26.0 8.8 83 93-187 7-93 (262)
398 PRK00779 ornithine carbamoyltr 48.4 83 0.0018 28.5 7.5 53 74-127 159-214 (304)
399 PRK07063 short chain dehydroge 48.3 1.4E+02 0.003 25.5 8.7 12 211-222 179-190 (260)
400 PRK05764 aspartate aminotransf 48.3 1.4E+02 0.003 27.4 9.2 52 70-122 93-144 (393)
401 PF04273 DUF442: Putative phos 48.2 1.1E+02 0.0024 23.4 7.0 83 97-188 10-97 (110)
402 PRK07060 short chain dehydroge 48.0 1.5E+02 0.0033 24.7 8.8 51 68-121 10-61 (245)
403 PRK01688 histidinol-phosphate 47.9 2E+02 0.0044 26.1 10.2 52 69-121 75-127 (351)
404 PLN02178 cinnamyl-alcohol dehy 47.8 80 0.0017 29.2 7.5 50 68-119 179-228 (375)
405 PRK12779 putative bifunctional 47.8 1.1E+02 0.0024 32.4 9.2 32 68-99 306-337 (944)
406 PLN02527 aspartate carbamoyltr 47.7 1.2E+02 0.0025 27.6 8.3 45 77-121 163-210 (306)
407 PRK09105 putative aminotransfe 47.6 1.7E+02 0.0036 27.0 9.6 53 68-121 95-147 (370)
408 PRK07370 enoyl-(acyl carrier p 47.5 1.4E+02 0.003 25.8 8.6 72 68-139 7-86 (258)
409 PRK07206 hypothetical protein; 47.4 2.3E+02 0.0049 26.4 10.6 63 76-140 10-94 (416)
410 TIGR02964 xanthine_xdhC xanthi 47.2 1.3E+02 0.0028 26.4 8.3 34 67-100 99-132 (246)
411 PRK05854 short chain dehydroge 47.2 1.4E+02 0.003 26.7 8.8 84 93-189 15-104 (313)
412 PRK02102 ornithine carbamoyltr 47.0 1.2E+02 0.0026 27.9 8.4 58 69-127 156-221 (331)
413 PRK08690 enoyl-(acyl carrier p 46.9 1.1E+02 0.0024 26.4 7.9 71 69-139 8-83 (261)
414 TIGR01963 PHB_DH 3-hydroxybuty 46.9 1.3E+02 0.0027 25.4 8.2 68 69-136 3-74 (255)
415 PRK08463 acetyl-CoA carboxylas 46.9 1.3E+02 0.0029 29.0 9.0 30 69-98 3-32 (478)
416 PRK07777 aminotransferase; Val 46.6 1.6E+02 0.0034 27.1 9.3 51 70-121 87-137 (387)
417 CHL00194 ycf39 Ycf39; Provisio 46.5 93 0.002 27.8 7.6 31 70-100 3-33 (317)
418 PRK08264 short chain dehydroge 46.5 59 0.0013 27.3 6.0 32 68-99 7-39 (238)
419 cd08245 CAD Cinnamyl alcohol d 46.4 1.1E+02 0.0025 27.0 8.1 49 69-120 164-212 (330)
420 PLN02342 ornithine carbamoyltr 46.4 74 0.0016 29.6 6.9 54 74-128 201-257 (348)
421 PRK08690 enoyl-(acyl carrier p 46.2 95 0.0021 26.8 7.4 85 93-189 7-95 (261)
422 PRK06997 enoyl-(acyl carrier p 46.1 1.4E+02 0.0031 25.7 8.5 71 69-139 8-83 (260)
423 cd05288 PGDH Prostaglandin deh 46.0 2.1E+02 0.0045 25.2 9.8 47 71-120 150-197 (329)
424 PRK09291 short chain dehydroge 45.9 54 0.0012 27.9 5.7 53 69-121 4-57 (257)
425 PRK07062 short chain dehydroge 45.9 1.6E+02 0.0036 25.1 8.8 86 93-189 9-98 (265)
426 PF02254 TrkA_N: TrkA-N domain 45.7 1.2E+02 0.0026 22.4 7.6 48 71-121 1-48 (116)
427 PRK12824 acetoacetyl-CoA reduc 45.7 1.8E+02 0.0039 24.3 8.9 32 69-100 4-35 (245)
428 PRK08945 putative oxoacyl-(acy 45.6 1.7E+02 0.0038 24.6 8.9 70 68-137 13-89 (247)
429 PRK06603 enoyl-(acyl carrier p 45.6 1.5E+02 0.0033 25.5 8.6 13 211-223 181-193 (260)
430 TIGR01861 ANFD nitrogenase iro 45.5 3.1E+02 0.0066 27.0 13.3 55 67-121 327-383 (513)
431 PRK11891 aspartate carbamoyltr 45.5 92 0.002 29.8 7.5 52 70-121 243-300 (429)
432 cd08282 PFDH_like Pseudomonas 45.5 1.1E+02 0.0023 28.1 8.0 48 68-117 177-224 (375)
433 PRK05479 ketol-acid reductoiso 45.2 2.5E+02 0.0055 25.9 10.6 48 68-117 17-64 (330)
434 PF11760 CbiG_N: Cobalamin syn 45.1 35 0.00077 24.9 3.7 41 177-224 10-50 (84)
435 KOG0023|consensus 45.1 1E+02 0.0022 28.5 7.4 48 72-122 187-234 (360)
436 cd08259 Zn_ADH5 Alcohol dehydr 44.9 1.2E+02 0.0026 26.7 7.9 48 69-119 165-212 (332)
437 PRK08703 short chain dehydroge 44.8 1.4E+02 0.0031 25.0 8.1 32 68-99 7-38 (239)
438 cd06306 PBP1_TorT-like TorT-li 44.8 2E+02 0.0043 24.6 18.5 57 168-234 174-230 (268)
439 PRK06194 hypothetical protein; 44.8 2E+02 0.0044 24.8 9.3 85 93-189 7-94 (287)
440 COG0604 Qor NADPH:quinone redu 44.8 2.4E+02 0.0053 25.6 12.4 50 68-120 144-193 (326)
441 PRK08654 pyruvate carboxylase 44.8 1.5E+02 0.0033 28.9 9.1 31 69-99 3-33 (499)
442 PLN02780 ketoreductase/ oxidor 44.5 1.7E+02 0.0038 26.3 9.0 32 68-99 54-85 (320)
443 TIGR00692 tdh L-threonine 3-de 44.5 1E+02 0.0022 27.6 7.5 49 69-119 163-211 (340)
444 PLN02231 alanine transaminase 44.3 3.1E+02 0.0067 26.9 11.3 53 69-121 192-244 (534)
445 PLN02702 L-idonate 5-dehydroge 44.1 1.3E+02 0.0028 27.3 8.3 49 69-119 183-231 (364)
446 PTZ00433 tyrosine aminotransfe 44.1 1.6E+02 0.0036 27.4 9.1 52 69-121 105-156 (412)
447 cd08232 idonate-5-DH L-idonate 44.0 1.3E+02 0.0028 26.8 8.1 48 68-117 166-213 (339)
448 PRK09276 LL-diaminopimelate am 44.0 1.5E+02 0.0032 27.2 8.6 51 70-121 95-145 (385)
449 PRK07074 short chain dehydroge 43.9 1.4E+02 0.003 25.4 8.0 31 69-99 4-34 (257)
450 PRK08361 aspartate aminotransf 43.9 2.4E+02 0.0051 26.0 10.1 52 69-121 94-145 (391)
451 PRK12742 oxidoreductase; Provi 43.6 1.5E+02 0.0033 24.7 8.1 52 68-121 7-59 (237)
452 PRK12748 3-ketoacyl-(acyl-carr 43.6 2E+02 0.0043 24.4 9.0 85 93-188 6-105 (256)
453 PRK12747 short chain dehydroge 43.6 1.2E+02 0.0026 25.8 7.5 53 68-120 5-59 (252)
454 PLN02827 Alcohol dehydrogenase 43.5 2.7E+02 0.0058 25.7 13.2 50 68-119 194-243 (378)
455 PRK06914 short chain dehydroge 43.5 1.7E+02 0.0036 25.2 8.6 32 69-100 5-36 (280)
456 PRK06181 short chain dehydroge 43.3 1.4E+02 0.0029 25.5 7.9 73 104-189 15-89 (263)
457 COG1167 ARO8 Transcriptional r 43.3 2.5E+02 0.0054 26.9 10.3 52 70-123 157-209 (459)
458 PRK14804 ornithine carbamoyltr 43.2 81 0.0018 28.7 6.6 30 74-103 160-189 (311)
459 PRK05599 hypothetical protein; 43.2 1.5E+02 0.0033 25.2 8.2 69 70-139 3-76 (246)
460 PRK07109 short chain dehydroge 43.2 2E+02 0.0043 26.1 9.3 84 93-189 9-96 (334)
461 PRK09422 ethanol-active dehydr 43.1 1.7E+02 0.0037 25.9 8.8 51 68-121 163-214 (338)
462 PLN02583 cinnamoyl-CoA reducta 43.1 1E+02 0.0022 27.3 7.2 34 67-100 6-39 (297)
463 TIGR01829 AcAcCoA_reduct aceto 43.1 1.4E+02 0.003 24.9 7.8 53 69-121 2-56 (242)
464 PRK07576 short chain dehydroge 43.1 1.7E+02 0.0037 25.2 8.5 70 68-137 10-83 (264)
465 PRK08363 alanine aminotransfer 42.9 2.5E+02 0.0054 25.9 10.1 51 69-120 94-144 (398)
466 PRK09082 methionine aminotrans 42.8 2.4E+02 0.0052 25.9 9.9 52 70-122 93-144 (386)
467 PRK06702 O-acetylhomoserine am 42.8 1.4E+02 0.003 28.6 8.4 87 52-145 63-155 (432)
468 TIGR01279 DPOR_bchN light-inde 42.7 2.3E+02 0.0049 26.7 9.8 64 67-130 273-338 (407)
469 cd08269 Zn_ADH9 Alcohol dehydr 42.7 1.3E+02 0.0028 26.2 7.8 48 69-119 131-179 (312)
470 cd08250 Mgc45594_like Mgc45594 42.6 1.3E+02 0.0028 26.5 7.9 47 70-119 143-189 (329)
471 PRK08960 hypothetical protein; 42.6 2.5E+02 0.0054 25.8 10.0 52 69-121 93-144 (387)
472 PRK06123 short chain dehydroge 42.6 1.4E+02 0.003 25.1 7.7 69 69-137 4-77 (248)
473 cd08299 alcohol_DH_class_I_II_ 42.4 1.4E+02 0.003 27.4 8.2 49 68-118 191-239 (373)
474 PRK07568 aspartate aminotransf 42.2 1.6E+02 0.0036 27.0 8.7 75 46-121 65-140 (397)
475 PRK06719 precorrin-2 dehydroge 42.2 1.7E+02 0.0036 23.7 7.7 117 68-203 13-140 (157)
476 PRK07337 aminotransferase; Val 42.1 2E+02 0.0042 26.5 9.2 52 69-121 91-142 (388)
477 PRK08306 dipicolinate synthase 42.1 1.5E+02 0.0032 26.7 8.1 48 68-118 152-199 (296)
478 PRK07865 N-succinyldiaminopime 42.0 2.7E+02 0.0058 25.3 10.2 53 69-121 87-139 (364)
479 PF03853 YjeF_N: YjeF-related 42.0 1.1E+02 0.0023 25.1 6.6 51 69-119 27-86 (169)
480 PRK06997 enoyl-(acyl carrier p 42.0 2.2E+02 0.0047 24.6 9.0 85 93-189 7-95 (260)
481 PRK08220 2,3-dihydroxybenzoate 41.9 1.6E+02 0.0034 24.8 8.0 63 68-138 9-74 (252)
482 PRK06959 putative threonine-ph 41.9 1.8E+02 0.0039 26.4 8.7 52 69-123 72-123 (339)
483 TIGR02823 oxido_YhdH putative 41.9 1.8E+02 0.0039 25.6 8.6 49 70-121 149-197 (323)
484 PRK06079 enoyl-(acyl carrier p 41.9 2E+02 0.0044 24.5 8.8 83 93-189 8-94 (252)
485 TIGR03539 DapC_actino succinyl 41.8 1.9E+02 0.0041 26.3 8.9 79 43-121 52-133 (357)
486 PRK07023 short chain dehydroge 41.8 90 0.0019 26.3 6.4 48 70-121 4-51 (243)
487 PRK05872 short chain dehydroge 41.8 99 0.0021 27.3 6.9 83 93-188 10-95 (296)
488 PRK07326 short chain dehydroge 41.7 2E+02 0.0044 23.8 9.4 84 93-189 7-93 (237)
489 PRK06935 2-deoxy-D-gluconate 3 41.7 2E+02 0.0044 24.4 8.7 84 93-188 16-101 (258)
490 PRK13376 pyrB bifunctional asp 41.5 1E+02 0.0022 30.3 7.3 53 69-121 175-233 (525)
491 TIGR03772 anch_rpt_subst ancho 41.5 1.1E+02 0.0024 29.7 7.5 85 82-176 380-474 (479)
492 cd06311 PBP1_ABC_sugar_binding 41.5 2.2E+02 0.0048 24.2 9.6 56 170-234 177-232 (274)
493 PRK13656 trans-2-enoyl-CoA red 41.4 1.9E+02 0.0042 27.4 8.8 94 43-139 14-130 (398)
494 PF13433 Peripla_BP_5: Peripla 41.3 72 0.0016 29.9 5.9 92 108-218 127-224 (363)
495 PRK10754 quinone oxidoreductas 41.3 2.1E+02 0.0046 25.2 9.1 49 68-119 141-190 (327)
496 PRK07856 short chain dehydroge 40.9 1.3E+02 0.0028 25.6 7.3 32 68-99 7-38 (252)
497 PRK02255 putrescine carbamoylt 40.9 1.3E+02 0.0029 27.7 7.7 48 74-121 161-214 (338)
498 PRK12936 3-ketoacyl-(acyl-carr 40.8 1.9E+02 0.0041 24.1 8.3 67 68-137 7-77 (245)
499 PRK06197 short chain dehydroge 40.8 1.6E+02 0.0034 26.1 8.1 71 68-138 17-93 (306)
500 PRK05664 threonine-phosphate d 40.7 2.7E+02 0.0059 25.0 10.5 52 68-122 64-115 (330)
No 1
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-57 Score=409.21 Aligned_cols=234 Identities=43% Similarity=0.631 Sum_probs=223.1
Q ss_pred ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHh-cCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED-QKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~-~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..+|||.+++ |++.+|.+||+|+|++||+||||.|||++.++.+.++ ++..+||++|+||||+++|++|+++|++++|
T Consensus 23 ~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~I 102 (347)
T COG1171 23 VNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATI 102 (347)
T ss_pred ccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEE
Confidence 3599999999 9999999999999999999999999999999998644 6788899999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||.++|..|.+.++.|||+|+.++.+|+++.+.+++++++.|++|+++ |++|+.++||.|++.||++|+
T Consensus 103 vMP~~tp~~Kv~a~r~~GaeVil~g~~~dda~~~a~~~a~~~G~~~i~p----------fD~p~viAGQGTi~lEileq~ 172 (347)
T COG1171 103 VMPETTPKIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLTFVPP----------FDDPDVIAGQGTIALEILEQL 172 (347)
T ss_pred EecCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEEeCC----------CCCcceeecccHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CC-CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCC-CCCCCCcccccccccCCCCC
Q psy5622 177 AN-IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK-PTPVSVQPTLADGLAVPLVG 254 (269)
Q Consensus 177 ~~-~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~-~~~~~~~~t~a~gl~~~~~~ 254 (269)
+. ||+||||+|+||+++|++.++|.+ .|.++||||||+++++|++|++.|. +...+..+|++||+++..++
T Consensus 173 ~~~~d~v~vpvGGGGLisGia~~~k~~-------~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g 245 (347)
T COG1171 173 PDLPDAVFVPVGGGGLISGIATALKAL-------SPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPG 245 (347)
T ss_pred cccCCEEEEecCccHHHHHHHHHHHHh-------CCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCC
Confidence 96 599999999999999999999999 9999999999999999999999994 44555588999999999999
Q ss_pred HHHHHHHhhhhcccC
Q psy5622 255 WNAFETAAPLIDKMF 269 (269)
Q Consensus 255 ~~~~~~~~~~~~~~~ 269 (269)
..+|+++++++|+++
T Consensus 246 ~~tf~i~~~~vd~~v 260 (347)
T COG1171 246 DLTFEILRELVDDIV 260 (347)
T ss_pred HHHHHHHHHcCCcEE
Confidence 999999999999875
No 2
>KOG1250|consensus
Probab=100.00 E-value=3.3e-55 Score=393.61 Aligned_cols=238 Identities=50% Similarity=0.736 Sum_probs=229.2
Q ss_pred eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCC
Q psy5622 15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIP 93 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~ 93 (269)
+....-.|||.+.- |++.+|.++|+|+|++||+||||.||+.+++.++.+++++.+|+++|.||||.|+|++|+++|++
T Consensus 60 i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~Lgip 139 (457)
T KOG1250|consen 60 IYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIP 139 (457)
T ss_pred cccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCc
Confidence 44455699999997 99999999999999999999999999999999998888899999999999999999999999999
Q ss_pred eEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHH
Q psy5622 94 VTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIV 173 (269)
Q Consensus 94 ~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~ 173 (269)
++||||..+|..|.+.++.+||+|+..+.+++++..++.++++++++.|+++ |+||+.|+|+.|++.||.
T Consensus 140 aTIVmP~~tp~~kiq~~~nlGA~Vil~G~~~deAk~~a~~lAke~gl~yI~p----------fDhP~I~aGqgTig~EIl 209 (457)
T KOG1250|consen 140 ATIVMPVATPLMKIQRCRNLGATVILSGEDWDEAKAFAKRLAKENGLTYIPP----------FDHPDIWAGQGTIGLEIL 209 (457)
T ss_pred eEEEecCCChHHHHHHHhccCCEEEEecccHHHHHHHHHHHHHhcCceecCC----------CCCchhhcCcchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhcCCCC-EEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCC
Q psy5622 174 DQVANID-AIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPL 252 (269)
Q Consensus 174 ~ql~~~d-~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~ 252 (269)
+|++.+| +|+||||+||+++||+.++|+. +|+++|||||+++|++|..+++.|+++..+...|+|||++++.
T Consensus 210 ~ql~~~~~AI~vpVGGGGLiaGIat~vk~~-------~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~ 282 (457)
T KOG1250|consen 210 EQLKEPDGAIVVPVGGGGLIAGIATGVKRV-------GPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKT 282 (457)
T ss_pred HhhcCCCCeEEEecCCchhHHHHHHHHHHh-------CCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccch
Confidence 9999555 9999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhhhcccC
Q psy5622 253 VGWNAFETAAPLIDKMF 269 (269)
Q Consensus 253 ~~~~~~~~~~~~~~~~~ 269 (269)
++.++|+..+.++|+++
T Consensus 283 Vg~~tf~~a~~~~d~vv 299 (457)
T KOG1250|consen 283 VGENTFELAQKLVDRVV 299 (457)
T ss_pred hhHHHHHHHHhcCceEE
Confidence 99999999999999864
No 3
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-54 Score=403.86 Aligned_cols=235 Identities=34% Similarity=0.542 Sum_probs=223.2
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++.+|++||+|+|++|||||||+|+|.+.+..+.++.+.++||++|+||||+++|++|+++|++|+|
T Consensus 17 ~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNhg~avA~aa~~~Gi~~~I 96 (403)
T PRK08526 17 FVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVIAASAGNHAQGVAISAKKFGIKAVI 96 (403)
T ss_pred cCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECccHHHHHHHHHHHHcCCCEEE
Confidence 35799999998 99989999999999999999999999999999987666778899999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||+.++..|++.++.|||+|+.++++++++.+.+.+++++.+++|+++ |+||..++||+|++.||++|+
T Consensus 97 vmP~~~p~~k~~~~r~~GA~Vv~~g~~~~~a~~~a~~~a~~~g~~~v~p----------~~~~~~i~G~gtia~EI~eq~ 166 (403)
T PRK08526 97 VMPEATPLLKVSGTKALGAEVILKGDNYDEAYAFALEYAKENNLTFIHP----------FEDEEVMAGQGTIALEMLDEI 166 (403)
T ss_pred EEcCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEeeCC----------CCCHHHHhhhHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 256 (269)
+.+|+||+|+|+||+++|++.++|++ +|.++||||||+++++++.+++.|++...+..+|+++|++++.+++.
T Consensus 167 ~~~D~vvvpvGgGGl~aGia~~~k~~-------~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~ 239 (403)
T PRK08526 167 SDLDMVVVPVGGGGLISGIASAAKQI-------NPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPI 239 (403)
T ss_pred CCCCEEEEecChHHHHHHHHHHHHHh-------CCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHH
Confidence 99999999999999999999999999 99999999999999999999999987766667899999999999999
Q ss_pred HHHHHhhhhcccC
Q psy5622 257 AFETAAPLIDKMF 269 (269)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (269)
+|+.+++++|+++
T Consensus 240 ~~~~~~~~vd~~v 252 (403)
T PRK08526 240 NLAIILECVDDFV 252 (403)
T ss_pred HHHHHHHhCCEEE
Confidence 9999999999874
No 4
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.2e-53 Score=408.19 Aligned_cols=235 Identities=37% Similarity=0.548 Sum_probs=223.4
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++.+|.+||+|+|++|||||||+|+|++.+..+.++.+.++||++|+||||+++|++|+.+|++|+|
T Consensus 34 ~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~aSaGNha~gvA~aA~~lGi~~~I 113 (521)
T PRK12483 34 VARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHAQGVALAAARLGVKAVI 113 (521)
T ss_pred hcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEECCCHHHHHHHHHHHHhCCCEEE
Confidence 45799999998 99999999999999999999999999999999876566677899999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||+.++..|+..++.|||+|+.++++++++.+.+.+++++.+++|+++ |+||.+++||+|++.||++|+
T Consensus 114 vmP~~tp~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~la~e~g~~~v~p----------fdd~~viaGqgTig~EI~eQ~ 183 (521)
T PRK12483 114 VMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFVPP----------FDDPDVIAGQGTVAMEILRQH 183 (521)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCeeeCC----------CCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred C-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCH
Q psy5622 177 A-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGW 255 (269)
Q Consensus 177 ~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~ 255 (269)
+ .+|+||+|+|+||+++|++.++|++ .|.+|||||||++++++..+++.|++...+...|++||++++.++.
T Consensus 184 ~~~~D~VvvpvGgGGliaGia~~~K~~-------~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~ 256 (521)
T PRK12483 184 PGPLDAIFVPVGGGGLIAGIAAYVKYV-------RPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGE 256 (521)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHh-------CCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCH
Confidence 8 5999999999999999999999999 9999999999999999999999999877667789999999999999
Q ss_pred HHHHHHhhhhcccC
Q psy5622 256 NAFETAAPLIDKMF 269 (269)
Q Consensus 256 ~~~~~~~~~~~~~~ 269 (269)
.+|+.+++++|++|
T Consensus 257 ~~~~~~~~~vd~vv 270 (521)
T PRK12483 257 HTFELCRHYVDEVV 270 (521)
T ss_pred HHHHHHHHhCCEEE
Confidence 99999999999875
No 5
>PLN02970 serine racemase
Probab=100.00 E-value=2.7e-53 Score=387.85 Aligned_cols=234 Identities=32% Similarity=0.513 Sum_probs=218.7
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.++++.++||++|+||||+|+|++|+.+|++|+|
T Consensus 24 ~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i 103 (328)
T PLN02970 24 FIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAYI 103 (328)
T ss_pred cCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence 45899999998 99888999999999999999999999999999887666778899999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||+++++.|++.|+.|||+|+.++++++++.+.+++++++.+++|+++ |+|+..++||+++++||++|+
T Consensus 104 vvp~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~la~~~g~~~~~~----------~~n~~~~~g~~t~g~Ei~~ql 173 (328)
T PLN02970 104 VVPKNAPACKVDAVIRYGGIITWCEPTVESREAVAARVQQETGAVLIHP----------YNDGRVISGQGTIALEFLEQV 173 (328)
T ss_pred EECCCCCHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCC----------CCCcchhhehHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999889999999 899999999999999999999
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 256 (269)
+.||+||+|+|+||+++|++++||+. +|.+|||+|||++++++..+++.|.+...+..+|+++|+.++ ++..
T Consensus 174 ~~~D~vv~~vG~GG~~~Gi~~~lk~~-------~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~-~~~~ 245 (328)
T PLN02970 174 PELDVIIVPISGGGLISGIALAAKAI-------KPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRAS-LGDL 245 (328)
T ss_pred cCCCEEEEeeCchHHHHHHHHHHHhc-------CCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCC-cCHH
Confidence 99999999999999999999999998 999999999999999999999999876656668999999876 7888
Q ss_pred HHHHHhhhhcccC
Q psy5622 257 AFETAAPLIDKMF 269 (269)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (269)
+|..+++++|+++
T Consensus 246 ~~~~~~~~~d~~v 258 (328)
T PLN02970 246 TWPVVRDLVDDVI 258 (328)
T ss_pred HHHHHHhhCCEEE
Confidence 8999998888764
No 6
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=3.2e-53 Score=387.71 Aligned_cols=235 Identities=39% Similarity=0.562 Sum_probs=220.6
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.++.+.++|+++|+||+|+|+|++|+.+|++|+|
T Consensus 24 ~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~~SsGN~g~alA~~aa~~G~~~~i 103 (333)
T PRK08638 24 RIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVALSCALLGIDGKV 103 (333)
T ss_pred cCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcCCeEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 45899999998 98888899999999999999999999999999876656677899999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||+++++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++ |+||.+++||+++++||++|+
T Consensus 104 v~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~a~~~g~~~~~~----------~~~~~~~~g~~t~a~Ei~~q~ 173 (333)
T PRK08638 104 VMPKGAPKSKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEEEGRTFIPP----------YDDPKVIAGQGTIGLEILEDL 173 (333)
T ss_pred EeCCCCcHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEEcCc----------CCCcchhccccHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 256 (269)
.++|+||+|+|+||+++|++++||+. +|.+++|+|||++|++|+.+++.|++...+..+|+++|+.++.|+..
T Consensus 174 ~~~d~vv~~vG~Gg~~~Gv~~~lk~~-------~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~~~ 246 (333)
T PRK08638 174 WDVDTVIVPIGGGGLIAGIAVALKSI-------NPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNL 246 (333)
T ss_pred CCCCEEEEEeChhHHHHHHHHHHHHh-------CCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCccHH
Confidence 88999999999999999999999999 89999999999999999999999988776666799999998889998
Q ss_pred HHHHHhhhhcccC
Q psy5622 257 AFETAAPLIDKMF 269 (269)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (269)
.++.+++++|+++
T Consensus 247 ~~~~~~~~~d~~v 259 (333)
T PRK08638 247 TYEIVRELVDDIV 259 (333)
T ss_pred HHHHHHHhCCeEE
Confidence 8888888888764
No 7
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=2.4e-53 Score=398.42 Aligned_cols=235 Identities=40% Similarity=0.647 Sum_probs=223.2
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++.+|.+||+|+|++|||||||||+|.+++.++.++++.++||++|+||||+++|++|+++|++|+|
T Consensus 19 ~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i 98 (404)
T PRK08198 19 VVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQGVAYAASLLGIKATI 98 (404)
T ss_pred cCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 45799999998 99989999999999999999999999999999987777888999999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||++++..|+++++.|||+|+.++.+++++.+.+.+++++.+++|++| |+||..++||+|+|+||++|+
T Consensus 99 v~p~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~~~~~~g~~~~~~----------~~~~~~~~g~~t~a~EI~~q~ 168 (404)
T PRK08198 99 VMPETAPLSKVKATRSYGAEVVLHGDVYDEALAKAQELAEETGATFVHP----------FDDPDVIAGQGTIGLEILEDL 168 (404)
T ss_pred EECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCC----------CCCccHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 256 (269)
+++|+||+|+|+||+++|++.+||++ .|.+++|||||+++++++.+++.|++...+..+|+++|+.++.|+..
T Consensus 169 ~~~d~vv~~vG~GG~~~Gi~~~~k~~-------~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~ 241 (404)
T PRK08198 169 PDVDTVVVPIGGGGLISGVATAVKAL-------RPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDL 241 (404)
T ss_pred CCCCEEEEEeCHhHHHHHHHHHHHHh-------CCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHH
Confidence 99999999999999999999999999 99999999999999999999999988766667899999999999999
Q ss_pred HHHHHhhhhcccC
Q psy5622 257 AFETAAPLIDKMF 269 (269)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (269)
+++.+++++|+++
T Consensus 242 ~~~~~~~~~d~~v 254 (404)
T PRK08198 242 TFEIIRELVDDVV 254 (404)
T ss_pred HHHHHHHhCCEEE
Confidence 9999999999864
No 8
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=2.7e-53 Score=398.01 Aligned_cols=235 Identities=35% Similarity=0.552 Sum_probs=221.5
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++.+|.+||+|+|++|||||||||+|.+++..+.+....++||++|+||||+|+|++|+.+|++|+|
T Consensus 22 ~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~~~gvv~aSsGN~g~a~A~aa~~~G~~~~i 101 (406)
T PRK06382 22 YLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGVITASAGNHAQGVAYAASINGIDAKI 101 (406)
T ss_pred cCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhccCCeEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 45899999998 99989999999999999999999999999998886655567799999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||+.+++.|++.++.|||+|+.++++++++.+.+++++++.+++|+++ |+||.+++|++|+++||++|+
T Consensus 102 vmp~~~~~~k~~~~~~~GA~Vv~~~~~~~~a~~~a~~la~~~~~~~v~~----------~~~~~~i~g~~t~~~Ei~eq~ 171 (406)
T PRK06382 102 VMPEYTIPQKVNAVEAYGAHVILTGRDYDEAHRYADKIAMDENRTFIEA----------FNDRWVISGQGTIGLEIMEDL 171 (406)
T ss_pred EEcCCCHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEecCc----------cCChHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 256 (269)
+.||+||+|+|+||+++|+++++|+. +|.+++|||||+++++++++++.|++.+.+..+|+++|++++.|+..
T Consensus 172 ~~~d~vvvpvG~GG~~~Gv~~~~k~~-------~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~ 244 (406)
T PRK06382 172 PDLDQIIVPVGGGGLISGIALAAKHI-------NPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDL 244 (406)
T ss_pred CCCCEEEEeeChHHHHHHHHHHHHHh-------CCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHH
Confidence 99999999999999999999999999 99999999999999999999999987766566899999999999998
Q ss_pred HHHHHhhhhcccC
Q psy5622 257 AFETAAPLIDKMF 269 (269)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (269)
+++.+++++|+++
T Consensus 245 ~~~~~~~~~d~~v 257 (406)
T PRK06382 245 TFDIAKNYVDDIV 257 (406)
T ss_pred HHHHHHHcCCEEE
Confidence 9999999999864
No 9
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=3.3e-53 Score=394.59 Aligned_cols=231 Identities=40% Similarity=0.625 Sum_probs=220.2
Q ss_pred Ccccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcC
Q psy5622 22 FNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPI 100 (269)
Q Consensus 22 TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 100 (269)
|||++++ |++.+|.+||+|+|++|||||||||+|.+++.++.++++.++|+++|+||||+|+|++|+++|++|+||||+
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~ 80 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPE 80 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 8999998 999899999999999999999999999999999876666678999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCC
Q psy5622 101 VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANID 180 (269)
Q Consensus 101 ~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d 180 (269)
.+++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++ |+|+..++||+|++.||++|++.+|
T Consensus 81 ~~~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~~~~~~~~~~~~~----------~~~~~~~~g~~t~~~Ei~~q~~~~D 150 (380)
T TIGR01127 81 SAPPSKVKATKSYGAEVILHGDDYDEAYAFATSLAEEEGRVFVHP----------FDDEFVMAGQGTIGLEIMEDIPDVD 150 (380)
T ss_pred CCcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCC----------CCChhhhhhhHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred EEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHHHHHH
Q psy5622 181 AIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFET 260 (269)
Q Consensus 181 ~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~ 260 (269)
+||+|+|+||+++|++.++|++ .|.+|+|||||+++++++.+++.|++.+.+...|+++|+.++.|+..+|+.
T Consensus 151 ~vv~~vG~Gg~~aGi~~~~k~~-------~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~ 223 (380)
T TIGR01127 151 TVIVPVGGGGLISGVASAAKQI-------NPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNI 223 (380)
T ss_pred EEEEEeChHHHHHHHHHHHHHh-------CCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHH
Confidence 9999999999999999999999 899999999999999999999999887766678999999999999999999
Q ss_pred HhhhhcccC
Q psy5622 261 AAPLIDKMF 269 (269)
Q Consensus 261 ~~~~~~~~~ 269 (269)
+++++|+++
T Consensus 224 ~~~~vd~~v 232 (380)
T TIGR01127 224 IKEYVDDVV 232 (380)
T ss_pred HHHhCCEEE
Confidence 999999864
No 10
>PLN02550 threonine dehydratase
Probab=100.00 E-value=4.5e-53 Score=406.91 Aligned_cols=236 Identities=38% Similarity=0.545 Sum_probs=224.5
Q ss_pred ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622 17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95 (269)
Q Consensus 17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 95 (269)
...++|||++++ |++.+|++||+|+|++|||||||+|+|.+.+..+.++.+.++||++|+||||+++|++|+++|++|+
T Consensus 105 ~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~aSaGNhAqgvA~aA~~lGika~ 184 (591)
T PLN02550 105 DVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQGVALSAQRLGCDAV 184 (591)
T ss_pred ccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHcCCCEE
Confidence 345799999998 9999999999999999999999999999999988666677889999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622 96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ 175 (269)
Q Consensus 96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q 175 (269)
||||+.++..|++.++.|||+|+.++++++++.+.+++++++.+++|+++ |+||.+++||+|+|.||++|
T Consensus 185 IvmP~~tp~~Kv~~~r~~GAeVvl~g~~~dea~~~A~~la~e~g~~fi~p----------fddp~viaGqgTig~EI~eQ 254 (591)
T PLN02550 185 IAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRALEEGRTFIPP----------FDHPDVIAGQGTVGMEIVRQ 254 (591)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEECC----------CCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCC
Q psy5622 176 VA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVG 254 (269)
Q Consensus 176 l~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~ 254 (269)
++ .+|+||+|+|+||+++|++.++|++ +|.+|||||||++++++..+++.|++...+...|++||++++.++
T Consensus 255 l~~~~D~VvvpVGgGGLiaGia~~lK~l-------~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G 327 (591)
T PLN02550 255 HQGPLHAIFVPVGGGGLIAGIAAYVKRV-------RPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVG 327 (591)
T ss_pred cCCCCCEEEEEeChhHHHHHHHHHHHHh-------CCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCC
Confidence 98 5999999999999999999999999 999999999999999999999999987766678999999999999
Q ss_pred HHHHHHHhhhhcccC
Q psy5622 255 WNAFETAAPLIDKMF 269 (269)
Q Consensus 255 ~~~~~~~~~~~~~~~ 269 (269)
..+|+.+++++|++|
T Consensus 328 ~~t~~i~~~~vD~vV 342 (591)
T PLN02550 328 EETFRLCRELVDGVV 342 (591)
T ss_pred HHHHHHHHhhCCEEE
Confidence 999999999999875
No 11
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=7.5e-53 Score=402.52 Aligned_cols=237 Identities=39% Similarity=0.575 Sum_probs=224.6
Q ss_pred eccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622 16 VIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV 94 (269)
Q Consensus 16 ~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~ 94 (269)
....++|||++++ |++.+|.+||+|+|++|||||||+|+|.+.+..+.++.+.++||++|+||||+++|++|+++|++|
T Consensus 12 ~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNha~~vA~aa~~~Gi~~ 91 (499)
T TIGR01124 12 YEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHAQGVAFSAARLGLKA 91 (499)
T ss_pred hCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 3345799999998 999999999999999999999999999999998766666788999999999999999999999999
Q ss_pred EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622 95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD 174 (269)
Q Consensus 95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ 174 (269)
+||||+.+|..|++.++.|||+|+.++++++++.+.+.+++++.+++|+++ |+||..++|++|+|.||++
T Consensus 92 ~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~~d~a~~~a~~la~~~g~~~i~p----------~~~~~~i~G~gtig~EI~~ 161 (499)
T TIGR01124 92 LIVMPETTPDIKVDAVRGFGGEVVLHGANFDDAKAKAIELSQEKGLTFIHP----------FDDPLVIAGQGTLALEILR 161 (499)
T ss_pred EEEECCCCCHHHHHHHHhCCCEEEEeCcCHHHHHHHHHHHHHhcCCEeeCC----------CCChHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred hcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCC
Q psy5622 175 QVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLV 253 (269)
Q Consensus 175 ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~ 253 (269)
|++ .+|+||+|+|+||+++|++.++|++ .|.+|||||||+++++++.+++.|++...+...|++||++++.+
T Consensus 162 q~~~~~D~vvvpvGgGGliaGia~~lk~~-------~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~ 234 (499)
T TIGR01124 162 QVANPLDAVFVPVGGGGLAAGVAALIKQL-------MPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRV 234 (499)
T ss_pred hCCCCCCEEEEccCccHHHHHHHHHHHHh-------CCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCc
Confidence 998 7999999999999999999999999 99999999999999999999999998777777899999999999
Q ss_pred CHHHHHHHhhhhcccC
Q psy5622 254 GWNAFETAAPLIDKMF 269 (269)
Q Consensus 254 ~~~~~~~~~~~~~~~~ 269 (269)
+..+|+.+++++|+++
T Consensus 235 g~~~~~~~~~~vd~vv 250 (499)
T TIGR01124 235 GDETFRLCQQYLDDIV 250 (499)
T ss_pred cHHHHHHHHHhCCEEE
Confidence 9999999999999875
No 12
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=2.2e-52 Score=391.73 Aligned_cols=236 Identities=33% Similarity=0.469 Sum_probs=219.0
Q ss_pred ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622 17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95 (269)
Q Consensus 17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 95 (269)
...++|||++++ |++.+|.+||+|+|++|||||||+|+|.+.+..+.++.+.++||++|+||||+++|++|+++|++|+
T Consensus 12 ~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~gvv~aSsGN~g~a~A~~a~~~G~~~~ 91 (409)
T TIGR02079 12 EVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQGFAYACRHLGVHGT 91 (409)
T ss_pred CcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHHHHHHHHHcCCCEE
Confidence 345799999998 9998999999999999999999999999999886555566789999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHcCCE---EEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHH
Q psy5622 96 VVMPIVAPIMKIQACRRYGAT---VIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEI 172 (269)
Q Consensus 96 ivvp~~~~~~~~~~l~~~Ga~---v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI 172 (269)
||||+.+++.|++.++.|||+ |+.++++++++.+.+.+++++.+++|+++ |+||.+++|++|+++||
T Consensus 92 iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~g~~~~~~----------~~~~~~~~g~~ti~~Ei 161 (409)
T TIGR02079 92 VFMPATTPKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDHGGTFIPP----------FDDPRIIEGQGTVAAEI 161 (409)
T ss_pred EEECCCCCHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCEEeCC----------CCCHhHhhhhHHHHHHH
Confidence 999999999999999999997 44567889999999999999999999999 89999999999999999
Q ss_pred HhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCC
Q psy5622 173 VDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP 251 (269)
Q Consensus 173 ~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~ 251 (269)
++|++ .||+||+|+|+||+++|++.++|++ +|.+++|||||++|+++..+++.|++...+..+|+++|++++
T Consensus 162 ~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~-------~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~ 234 (409)
T TIGR02079 162 LDQLPEKPDYVVVPVGGGGLISGLTTYLAGT-------SPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVK 234 (409)
T ss_pred HHhcCCCCCEEEEEecHhHHHHHHHHHHHHh-------CCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCC
Confidence 99998 5999999999999999999999999 999999999999999999999999876655668999999999
Q ss_pred CCCHHHHHHHhhhhcccC
Q psy5622 252 LVGWNAFETAAPLIDKMF 269 (269)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ 269 (269)
.++..+|+.+++++|+++
T Consensus 235 ~~g~~~~~~~~~~vd~vv 252 (409)
T TIGR02079 235 RVGDLNFKALKDVPDEVT 252 (409)
T ss_pred CCcHHHHHHHHHhCCcEE
Confidence 999989999999999874
No 13
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=4e-52 Score=379.20 Aligned_cols=235 Identities=34% Similarity=0.508 Sum_probs=219.1
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.++++.++|+++|+||||+|+|++|+.+|++|++
T Consensus 21 ~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v 100 (321)
T PRK07048 21 VAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGVVTFSSGNHAQAIALSARLLGIPATI 100 (321)
T ss_pred CCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcCCcEEEeCCCHHHHHHHHHHHHcCCCEEE
Confidence 35799999998 88888899999999999999999999999999886566678899999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||+++++.|+.+|+.|||+|+.++++++++.+.+++++++.+++|+++ |+|+.+++|++++++||++|+
T Consensus 101 vvp~~~~~~k~~~~~~~GAeV~~~~~~~~~~~~~a~~l~~~~g~~~~~~----------~~~~~~~~g~~t~~~EI~~q~ 170 (321)
T PRK07048 101 VMPQDAPAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIPP----------YDHPHVIAGQGTAAKELFEEV 170 (321)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEECC----------CCCcchhhccchHHHHHHhhc
Confidence 9999999999999999999999999988999999999999999999999 899999999999999999999
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 256 (269)
+.||+||+|+|+||+++|+++++|++ +|.++|++|||++++++..++..|+....+...|+++|+.++.++..
T Consensus 171 ~~~D~vv~~vGtGG~~~Gi~~~~k~~-------~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~ 243 (321)
T PRK07048 171 GPLDALFVCLGGGGLLSGCALAARAL-------SPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNY 243 (321)
T ss_pred CCCCEEEEecChhHHHHHHHHHHHHh-------CCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHH
Confidence 99999999999999999999999999 89999999999999999999999987655566899999988888888
Q ss_pred HHHHHhhhhcccC
Q psy5622 257 AFETAAPLIDKMF 269 (269)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (269)
+++.+++++|+++
T Consensus 244 ~~~~~~~~~d~~~ 256 (321)
T PRK07048 244 TFPIIRRLVDDIV 256 (321)
T ss_pred HHHHHHHhCCceE
Confidence 9999999988764
No 14
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-52 Score=379.83 Aligned_cols=234 Identities=29% Similarity=0.438 Sum_probs=216.5
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc-CCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ-KKKGVISASLGNHAQAMCYHGSRLNIPVT 95 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~-~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 95 (269)
..++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.+++ ....|+++|+||||+|+|++|+++|++|+
T Consensus 18 ~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ 97 (322)
T PRK06110 18 AMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAAT 97 (322)
T ss_pred cCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCEE
Confidence 45899999998 99888999999999999999999999999999886443 35679999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622 96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ 175 (269)
Q Consensus 96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q 175 (269)
||||+++++.|+++++.|||+|+.++++++++.+.+++++++++++|+++ | ||..++||+|+++||++|
T Consensus 98 ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~-~~~~~~G~~t~~~Ei~~q 166 (322)
T PRK06110 98 IVVPHGNSVEKNAAMRALGAELIEHGEDFQAAREEAARLAAERGLHMVPS----------F-HPDLVRGVATYALELFRA 166 (322)
T ss_pred EEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCC----------C-CChHHhccchHHHHHHhh
Confidence 99999999999999999999999999999999999999999989999888 7 678889999999999999
Q ss_pred cCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCH
Q psy5622 176 VANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGW 255 (269)
Q Consensus 176 l~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~ 255 (269)
++.+|+||+|+|+||+++|++.++|+. +|.+|+++|||+++++++.+++.|+..+.+...|+++|+.++.+++
T Consensus 167 ~~~~D~vv~pvG~Gg~~~Gv~~~~k~~-------~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~ 239 (322)
T PRK06110 167 VPDLDVVYVPIGMGSGICGAIAARDAL-------GLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDP 239 (322)
T ss_pred CCCCCEEEEecCHHHHHHHHHHHHHHh-------CCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccH
Confidence 999999999999999999999999998 8999999999999999999999998776666789999998888888
Q ss_pred HHHHHHhhhhcccC
Q psy5622 256 NAFETAAPLIDKMF 269 (269)
Q Consensus 256 ~~~~~~~~~~~~~~ 269 (269)
..|+.+++++|+++
T Consensus 240 ~~~~~~~~~~d~~~ 253 (322)
T PRK06110 240 EALEVIRAGADRIV 253 (322)
T ss_pred HHHHHHHHhCCeEE
Confidence 88999999999864
No 15
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=3.9e-52 Score=379.42 Aligned_cols=235 Identities=37% Similarity=0.558 Sum_probs=215.5
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.+++..++||++|+||||+|+|++|+++|++|+|
T Consensus 16 ~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i 95 (322)
T PRK07476 16 RVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAARALGIRATI 95 (322)
T ss_pred CCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEE
Confidence 45899999998 99889999999999999999999999999999987666556699999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||+.+++.|++.|+.|||+|+.++++++++.+.+.+++++.+++|+++ ++||.+++|++++++||++|+
T Consensus 96 ~vp~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~----------~~n~~~~~g~~t~~~Ei~~Q~ 165 (322)
T PRK07476 96 CMSRLVPANKVDAIRALGAEVRIVGRSQDDAQAEVERLVREEGLTMVPP----------FDDPRIIAGQGTIGLEILEAL 165 (322)
T ss_pred EeCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCC----------CCCcceeechhHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCccccccccc--CCCCC
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLA--VPLVG 254 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~--~~~~~ 254 (269)
+++|+||+|+|+||+++|++.+||++ .|.++||+|||+++++++.+++.|++...+..+|+++++. ++.++
T Consensus 166 ~~~d~iv~~vG~GG~~~Gv~~~~k~~-------~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~ 238 (322)
T PRK07476 166 PDVATVLVPLSGGGLASGVAAAVKAI-------RPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDN 238 (322)
T ss_pred cCCCEEEEEcChHHHHHHHHHHHHHh-------CCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCc
Confidence 98999999999999999999999999 8999999999999999999999998765556679999884 33346
Q ss_pred HHHHHHHhhhhcccC
Q psy5622 255 WNAFETAAPLIDKMF 269 (269)
Q Consensus 255 ~~~~~~~~~~~~~~~ 269 (269)
..+++.+++++|+++
T Consensus 239 ~~~~~~~~~~~d~~~ 253 (322)
T PRK07476 239 RYTFAMCRALLDDVV 253 (322)
T ss_pred HHHHHHHHhcCCeEE
Confidence 677888888888753
No 16
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=4.2e-52 Score=378.26 Aligned_cols=235 Identities=37% Similarity=0.569 Sum_probs=216.6
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.++.+.++++++|+||||+|+|++|+++|++|++
T Consensus 16 ~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v 95 (317)
T TIGR02991 16 RVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATI 95 (317)
T ss_pred cCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccCCeEEEECCCHHHHHHHHHHHHhCCCEEE
Confidence 35799999998 88888999999999999999999999999999876555667899999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||+.+++.|++.++.|||+|+.++++++++.+.+++++++.+++|++| |+||++++||+|+++||++|+
T Consensus 96 ~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~----------~~n~~~~~g~~t~a~Ei~~q~ 165 (317)
T TIGR02991 96 CMSELVPQNKVDEIRRLGAEVRIVGRSQDDAQEEVERLVADRGLTMLPP----------FDHPDIVAGQGTLGLEVVEQM 165 (317)
T ss_pred EcCCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEeeCC----------CCChHHHhhHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCccccccccc--CCCCC
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLA--VPLVG 254 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~--~~~~~ 254 (269)
+++|+||+|+|+||+++|++++||++ .|.++|++|||+++++++.+++.|++...+..+|+++|+. ++.++
T Consensus 166 ~~~d~vvv~~G~Gg~~~Gi~~~~k~~-------~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~ 238 (317)
T TIGR02991 166 PDLATVLVPLSGGGLASGVAMAVKAA-------RPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDN 238 (317)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHh-------CCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCC
Confidence 98999999999999999999999999 8999999999999999999999998776556689999884 44456
Q ss_pred HHHHHHHhhhhcccC
Q psy5622 255 WNAFETAAPLIDKMF 269 (269)
Q Consensus 255 ~~~~~~~~~~~~~~~ 269 (269)
..+++.+++++|+++
T Consensus 239 ~~~~~~~~~~vd~~v 253 (317)
T TIGR02991 239 RVTFAMCKALLDEIV 253 (317)
T ss_pred HHHHHHHHHhCCeEE
Confidence 778999999998764
No 17
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=4.9e-52 Score=398.10 Aligned_cols=237 Identities=38% Similarity=0.575 Sum_probs=223.9
Q ss_pred eccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622 16 VIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV 94 (269)
Q Consensus 16 ~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~ 94 (269)
....++|||++++ |++.+|.+||+|+|++|||||||+|+|.+.+..+.++.+.++||++|+||||+++|++|+++|++|
T Consensus 15 ~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV~aSaGNha~avA~aa~~lGi~~ 94 (504)
T PRK09224 15 YDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVITASAGNHAQGVALSAARLGIKA 94 (504)
T ss_pred cCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEEEECcCHHHHHHHHHHHHcCCCE
Confidence 3345799999998 999999999999999999999999999999998765666788999999999999999999999999
Q ss_pred EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622 95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD 174 (269)
Q Consensus 95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ 174 (269)
+||||+.++..|++.++.|||+|+.++++++++.+.+.+++++.+++|+++ |+||.+++|++|++.||++
T Consensus 95 ~IvmP~~tp~~K~~~~r~~GA~Vi~~g~~~~~a~~~a~~l~~~~g~~~v~~----------f~~~~~i~G~gTi~~EI~~ 164 (504)
T PRK09224 95 VIVMPVTTPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEEEGLTFIHP----------FDDPDVIAGQGTIAMEILQ 164 (504)
T ss_pred EEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCC----------CCCcHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred hcCC-CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCC
Q psy5622 175 QVAN-IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLV 253 (269)
Q Consensus 175 ql~~-~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~ 253 (269)
|++. +|+||+|+|+||+++|++.++|.+ .|.+|||||||+++++++.+++.|++...+...|++||++++.+
T Consensus 165 q~~~~~D~vvvpvGgGGliaGia~~lk~~-------~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~ 237 (504)
T PRK09224 165 QHPHPLDAVFVPVGGGGLIAGVAAYIKQL-------RPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRI 237 (504)
T ss_pred hccCCCCEEEEecChhHHHHHHHHHHHHh-------CCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCc
Confidence 9985 999999999999999999999999 99999999999999999999999998777777899999999999
Q ss_pred CHHHHHHHhhhhcccC
Q psy5622 254 GWNAFETAAPLIDKMF 269 (269)
Q Consensus 254 ~~~~~~~~~~~~~~~~ 269 (269)
+..+|+.+++++|+++
T Consensus 238 g~~~~~~~~~~vd~~v 253 (504)
T PRK09224 238 GEETFRLCQEYVDDVI 253 (504)
T ss_pred cHHHHHHHHhcCCeEE
Confidence 9999999999999874
No 18
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=3.4e-52 Score=392.01 Aligned_cols=236 Identities=35% Similarity=0.532 Sum_probs=218.9
Q ss_pred ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622 17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95 (269)
Q Consensus 17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 95 (269)
...++|||++++ |++..|.+||+|+|++|||||||||+|.+++.++.++.+.++|+++|+||||+++|++|+++|++|+
T Consensus 21 ~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~~Vv~aSsGN~g~alA~~a~~~G~~~~ 100 (420)
T PRK08639 21 DVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAAGVVCASAGNHAQGVAYACRHLGIPGV 100 (420)
T ss_pred CcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHHHHHHHHHcCCCEE
Confidence 345799999998 9988899999999999999999999999999986555556789999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHcCCEE---EEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHH
Q psy5622 96 VVMPIVAPIMKIQACRRYGATV---IVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEI 172 (269)
Q Consensus 96 ivvp~~~~~~~~~~l~~~Ga~v---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI 172 (269)
||||+.+++.|++.++.|||+| +..+.+++++.+.+.+++++.+++|++| |+||.+++||.|+++||
T Consensus 101 IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~g~~~~~~----------~~~~~~~~G~~tig~EI 170 (420)
T PRK08639 101 IFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETGATFIPP----------FDDPDVIAGQGTVAVEI 170 (420)
T ss_pred EEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhcCCcccCC----------CCChhHhcchhHHHHHH
Confidence 9999999999999999999974 4456789999999999999999999999 89999999999999999
Q ss_pred HhhcCC---CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCccccccccc
Q psy5622 173 VDQVAN---IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLA 249 (269)
Q Consensus 173 ~~ql~~---~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~ 249 (269)
++|++. ||+||+|+|+||+++|++.++|+. +|.+++|||||++|++++.+++.|++...+..+|+++|++
T Consensus 171 ~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~-------~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~ 243 (420)
T PRK08639 171 LEQLEKEGSPDYVFVPVGGGGLISGVTTYLKER-------SPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAA 243 (420)
T ss_pred HHhccccCCCCEEEEecChhHHHHHHHHHHHHh-------CCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccc
Confidence 999984 999999999999999999999999 9999999999999999999999998876666789999999
Q ss_pred CCCCCHHHHHHHhhhhcccC
Q psy5622 250 VPLVGWNAFETAAPLIDKMF 269 (269)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ 269 (269)
++.++..+|+.+++++|+++
T Consensus 244 v~~~g~~~~~~~~~~vd~~v 263 (420)
T PRK08639 244 VARVGDLTFEILKDVVDDVV 263 (420)
T ss_pred cCCccHHHHHHHHHhCCeEE
Confidence 99999999999999999864
No 19
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.5e-51 Score=374.47 Aligned_cols=231 Identities=29% Similarity=0.362 Sum_probs=212.6
Q ss_pred CCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC--CccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622 21 WFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK--KKGVISASLGNHAQAMCYHGSRLNIPVTVV 97 (269)
Q Consensus 21 ~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~--~~~vv~~SsGN~g~alA~~a~~~G~~~~iv 97 (269)
+|||++++ |.+.+|.+||+|+|++|||||||||++.+++.++.+++. .++|+++|+||||+|+|++|+.+|++|+||
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv 80 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTIV 80 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEE
Confidence 69999998 888889999999999999999999999999999876553 788999999999999999999999999999
Q ss_pred EcCCCcHHHHHHHHHcCCEEEEeCCC-HHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622 98 MPIVAPIMKIQACRRYGATVIVEGAD-MKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ 175 (269)
Q Consensus 98 vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q 175 (269)
||+.+++.|++.|+.|||+|+.++++ ++++.+.+++++++. +++|+++ |+||.+++||+++++||++|
T Consensus 81 ~p~~~~~~k~~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------~~n~~~~~g~~t~~~Ei~~q 150 (316)
T cd06448 81 VPESTKPRVVEKLRDEGATVVVHGKVWWEADNYLREELAENDPGPVYVHP----------FDDPLIWEGHSSMVDEIAQQ 150 (316)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEECCchHHHHHHHHHHHHhccCCcEEeCC----------CCCchhhccccHHHHHHHHH
Confidence 99999999999999999999999987 777888888888886 8999999 89999999999999999999
Q ss_pred cCC---CCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCC
Q psy5622 176 VAN---IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP 251 (269)
Q Consensus 176 l~~---~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~ 251 (269)
++. ||+||+|+|+||+++|++++|+++ + +++++|+|||++|+++..+++.|++...+..+|+++|+..+
T Consensus 151 ~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~-------~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~ 223 (316)
T cd06448 151 LQSQEKVDAIVCSVGGGGLLNGIVQGLERN-------GWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAK 223 (316)
T ss_pred ccccCCCCEEEEEeCchHHHHHHHHHHHhc-------CCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCC
Confidence 974 999999999999999999999998 6 88999999999999999999999875554557999999988
Q ss_pred CCCHHHHHHHhhhhccc
Q psy5622 252 LVGWNAFETAAPLIDKM 268 (269)
Q Consensus 252 ~~~~~~~~~~~~~~~~~ 268 (269)
.+++.+|+.+++.+|++
T Consensus 224 ~~~~~~~~~~~~~~~~~ 240 (316)
T cd06448 224 TVSSQALEYAQEHNIKS 240 (316)
T ss_pred CcCHHHHHHHHhcCCeE
Confidence 88888899998887765
No 20
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=4.3e-51 Score=374.05 Aligned_cols=227 Identities=21% Similarity=0.287 Sum_probs=201.6
Q ss_pred eeccccCCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622 15 FVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV 94 (269)
Q Consensus 15 ~~~~~~~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~ 94 (269)
++++||+|||++.+ +||+|+|++|||||||||++.++++++.+ .+.++|+++|+||+|.|+|++|+++|++|
T Consensus 52 vslgeG~TPLv~~~-------~l~~K~E~~nPTGSfKDRga~~~i~~a~~-~g~~~vv~aSsGN~g~slA~~aa~~G~~~ 123 (338)
T PRK06450 52 ISLGEGRTPLIKKG-------NIWFKLDFLNPTGSYKDRGSVTLISYLAE-KGIKQISEDSSGNAGASIAAYGAAAGIEV 123 (338)
T ss_pred CCCCCCCCCceecC-------CEEEEecCCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEECCcHHHHHHHHHHHHcCCCE
Confidence 78999999999853 79999999999999999999999999864 56789999999999999999999999999
Q ss_pred EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622 95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD 174 (269)
Q Consensus 95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ 174 (269)
+||||+++++.|+++|+.|||+|+.++++++++.+. +++.+++|+++ +.||++++|++|+++||++
T Consensus 124 ~i~vP~~~~~~k~~~i~~~GA~vi~v~~~~~~~~~~----a~~~g~~~~~~----------~~np~~ieG~kTia~EI~e 189 (338)
T PRK06450 124 KIFVPETASGGKLKQIESYGAEVVRVRGSREDVAKA----AENSGYYYASH----------VLQPQFRDGIRTLAYEIAK 189 (338)
T ss_pred EEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHH----HHhcCeEeccC----------CCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998886654 55667788888 7899999999999999999
Q ss_pred hcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCC
Q psy5622 175 QVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPL 252 (269)
Q Consensus 175 ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~ 252 (269)
|++ .||+||+|+|+|++++|++++|+++ ...|++++.+|+|+|||+++++++.+++.+++.+.+..+|+++||.+++
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el-~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~ 268 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHL-LDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR 268 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHH-HhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC
Confidence 997 5999999999999999999999999 6788888889999999999999999998554444445679999998877
Q ss_pred CC--HHHHHHHhhh
Q psy5622 253 VG--WNAFETAAPL 264 (269)
Q Consensus 253 ~~--~~~~~~~~~~ 264 (269)
|. ..+++.+++.
T Consensus 269 p~~~~~~~~~i~~~ 282 (338)
T PRK06450 269 PFLLDYMVKALSEY 282 (338)
T ss_pred CCCHHHHHHHHHhc
Confidence 64 3456666654
No 21
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-51 Score=370.38 Aligned_cols=234 Identities=38% Similarity=0.534 Sum_probs=215.0
Q ss_pred ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622 19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV 97 (269)
Q Consensus 19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv 97 (269)
.++|||++++ |++..|.+||+|+|++|||||||||++.+.+..+.++.+.++++++|+||||+|+|++|+++|++|+||
T Consensus 18 i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i~ 97 (317)
T PRK06815 18 VRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASSGNHGQGVALAAKLAGIPVTVY 97 (317)
T ss_pred CCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhcCceEEEECCChHHHHHHHHHHHhCCCEEEE
Confidence 4799999998 888889999999999999999999999999998754545677999999999999999999999999999
Q ss_pred EcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC
Q psy5622 98 MPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA 177 (269)
Q Consensus 98 vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~ 177 (269)
||+++++.|+..++.+||+|+.++++++++.+.+++++++.+++|+++ |+||..++|++++++||++|++
T Consensus 98 ~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~~g~~t~a~Ei~~q~~ 167 (317)
T PRK06815 98 APEQASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYISP----------YNDPQVIAGQGTIGMELVEQQP 167 (317)
T ss_pred ECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEecC----------CCChhhhcchhHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999 8899999999999999999999
Q ss_pred CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCC-CCCHH
Q psy5622 178 NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP-LVGWN 256 (269)
Q Consensus 178 ~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~-~~~~~ 256 (269)
.+|+||+|+|+||+++|++.+|+++ .|.++|++|||+++++++.+++.|++.+.+..+|+++|+..+ .++..
T Consensus 168 ~~d~vv~~vG~Gg~~~Gi~~~~k~~-------~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~ 240 (317)
T PRK06815 168 DLDAVFVAVGGGGLISGIATYLKTL-------SPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAI 240 (317)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHHh-------CCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHH
Confidence 9999999999999999999999999 899999999999999999999999877666677899988544 35667
Q ss_pred HHHHHhhhhcccC
Q psy5622 257 AFETAAPLIDKMF 269 (269)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (269)
+++.+++++|+++
T Consensus 241 ~~~~~~~~~~~~~ 253 (317)
T PRK06815 241 TFPLCQQLIDQKV 253 (317)
T ss_pred HHHHHHHhCCeEE
Confidence 7888888888764
No 22
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=7.7e-51 Score=380.11 Aligned_cols=241 Identities=23% Similarity=0.299 Sum_probs=217.2
Q ss_pred eeccccCCcccccc-ccccCCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622 15 FVIRDQWFNSKKSH-LSELTKM-EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI 92 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~ 92 (269)
+++++|+|||++++ |++.+|. +||+|+|++|||||||||++.+++.++. +.+.++|+++|+||+|+|+|++|+++|+
T Consensus 73 vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~-~~g~~~vv~aSsGN~g~alA~~aa~~G~ 151 (394)
T PRK08197 73 VSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAK-ELGVKHLAMPTNGNAGAAWAAYAARAGI 151 (394)
T ss_pred CccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHH-HcCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 78999999999998 9888885 9999999999999999999999999875 5567899999999999999999999999
Q ss_pred CeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHH
Q psy5622 93 PVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEI 172 (269)
Q Consensus 93 ~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI 172 (269)
+|+||||+++++.|+.+++.|||+|+.++++++++.+.+++++++.+++++++ +.||++++|++|+++||
T Consensus 152 ~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~~~~----------~~np~~ieG~~t~a~Ei 221 (394)
T PRK08197 152 RATIFMPADAPEITRLECALAGAELYLVDGLISDAGKIVAEAVAEYGWFDVST----------LKEPYRIEGKKTMGLEL 221 (394)
T ss_pred cEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcccccC----------CCCccchhcHHHHHHHH
Confidence 99999999999999999999999999999999999999999998889888888 88999999999999999
Q ss_pred HhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCC--CCCccccccc
Q psy5622 173 VDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTP--VSVQPTLADG 247 (269)
Q Consensus 173 ~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~--~~~~~t~a~g 247 (269)
++|++ .||+||+|+|+|++++|++++|+++ ...|++. +.+++++|||+++++++++++.|.... ....+|+++|
T Consensus 222 ~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~-~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~g 300 (394)
T PRK08197 222 AEQLGWRLPDVILYPTGGGVGLIGIWKAFDEL-EALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFG 300 (394)
T ss_pred HHHcCCCCCCEEEEeCCChHHHHHHHHHHHHH-HHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehh
Confidence 99997 4999999999999999999999998 6788885 889999999999999999999886543 2345789999
Q ss_pred ccCCCCC--HHHHHHHhhhhcc
Q psy5622 248 LAVPLVG--WNAFETAAPLIDK 267 (269)
Q Consensus 248 l~~~~~~--~~~~~~~~~~~~~ 267 (269)
+.++.+. ..+++.+++..++
T Consensus 301 l~~~~~~~~~~~~~~~~~~~g~ 322 (394)
T PRK08197 301 IRVPKALGDFLVLDAVRETGGC 322 (394)
T ss_pred hhCCCCCCHHHHHHHHHHhCCE
Confidence 9888763 3566777665443
No 23
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.2e-50 Score=381.27 Aligned_cols=242 Identities=22% Similarity=0.312 Sum_probs=217.2
Q ss_pred eeccccCCcccccc-ccccCCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622 15 FVIRDQWFNSKKSH-LSELTKM-EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI 92 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~ 92 (269)
+++++|+|||++++ |++.+|. +||+|+|++|||||||||++.+++.++. +.+.++|+++|+||||+|+|++|+++|+
T Consensus 83 v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~-~~g~~~vv~aSsGN~g~alA~~aa~~Gl 161 (421)
T PRK07591 83 VDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAAR-ELGFTTVACASTGNLANSVAAHAARAGL 161 (421)
T ss_pred CcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHH-HcCCCEEEEeCCCHHHHHHHHHHHHcCC
Confidence 78999999999998 9998995 9999999999999999999999999875 5567889999999999999999999999
Q ss_pred CeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchhccchhHHHH
Q psy5622 93 PVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLE 171 (269)
Q Consensus 93 ~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~E 171 (269)
+|+||||+++++.|+.+++.|||+|+.++++++++.+.+++++++. +++|+++ +.||+.++|++|+++|
T Consensus 162 ~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~~~~~~~~~~~~~n~----------~~~p~~ieG~~Tia~E 231 (421)
T PRK07591 162 DSCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCSELANEHEGWGFVNI----------NLRPYYAEGSKTLGYE 231 (421)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEEecC----------CCCcccccchHHHHHH
Confidence 9999999999999999999999999999999999999999999887 7888887 7799999999999999
Q ss_pred HHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCC-Cccccccc
Q psy5622 172 IVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVS-VQPTLADG 247 (269)
Q Consensus 172 I~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~-~~~t~a~g 247 (269)
|++|++ .||+||+|+|+||+++|++++|+++ ...|++. +.+|+++|||+++++++++++.|.....+ ..+|++++
T Consensus 232 i~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel-~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~ 310 (421)
T PRK07591 232 VAEQLGWRLPDQVVAPLASGSLLTKIDKGFQEL-IKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKS 310 (421)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHH-HhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhh
Confidence 999997 4999999999999999999999998 6788886 77999999999999999999998754333 25799999
Q ss_pred ccCCCC--CHHHHHHHhhhhccc
Q psy5622 248 LAVPLV--GWNAFETAAPLIDKM 268 (269)
Q Consensus 248 l~~~~~--~~~~~~~~~~~~~~~ 268 (269)
+.++.| ...+++.+++..+++
T Consensus 311 l~~~~p~~~~~~~~~i~~~~g~~ 333 (421)
T PRK07591 311 LAIGNPADGPYALDIARRTGGAI 333 (421)
T ss_pred eecCCCCCcHHHHHHHHHhCCEE
Confidence 977665 446677777655543
No 24
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-50 Score=379.50 Aligned_cols=233 Identities=39% Similarity=0.647 Sum_probs=215.1
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.++.+.++|+++|+||||+|+|++|+++|++|+|
T Consensus 20 ~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i 99 (403)
T PRK07334 20 QVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGVIAMSAGNHAQGVAYHAQRLGIPATI 99 (403)
T ss_pred CCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHhCCcEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence 45899999998 98888999999999999999999999999999876555667799999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||+++++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++ |+||.+++||+|+++||++|+
T Consensus 100 v~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~a~~l~~~~~~~~~~~----------~~~~~~~~g~~t~~~Ei~~q~ 169 (403)
T PRK07334 100 VMPRFTPTVKVERTRGFGAEVVLHGETLDEARAHARELAEEEGLTFVHP----------YDDPAVIAGQGTVALEMLEDA 169 (403)
T ss_pred EECCCCCHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEecCC----------CCCHHHHHhHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 256 (269)
+.+|+||+|+|+||+++|++++||++ +|.+++++|||+++++++.+++.+... ...+|+++||.++.++..
T Consensus 170 ~~~d~vv~~vG~GG~~~Gi~~~lk~~-------~~~~~vi~ve~~~~~~~~~~~~~~~~~--~~~~~~~~gi~~~~~~~~ 240 (403)
T PRK07334 170 PDLDTLVVPIGGGGLISGMATAAKAL-------KPDIEIIGVQTELYPSMYAAIKGVALP--CGGSTIAEGIAVKQPGQL 240 (403)
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHh-------CCCCEEEEEEECCCchHHHHHhCCCcc--CCCCCccceecCCCccHH
Confidence 99999999999999999999999999 999999999999999999988654322 235689999999989999
Q ss_pred HHHHHhhhhcccC
Q psy5622 257 AFETAAPLIDKMF 269 (269)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (269)
++..+++++|+++
T Consensus 241 ~~~~~~~~~d~~v 253 (403)
T PRK07334 241 TLEIVRRLVDDIL 253 (403)
T ss_pred HHHHHHHhCCeEE
Confidence 9999999988764
No 25
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.5e-50 Score=376.52 Aligned_cols=238 Identities=23% Similarity=0.215 Sum_probs=209.6
Q ss_pred eccccCCcccccc-ccccCC--------CeEEEEeCCCCC-CCchhhHHHHHHHHhch-----HhcC-------------
Q psy5622 16 VIRDQWFNSKKSH-LSELTK--------MEIFLKKDFFQV-TGSFKERGACYALLMLS-----EDQK------------- 67 (269)
Q Consensus 16 ~~~~~~TPl~~~~-l~~~~g--------~~i~~K~E~~np-tGS~K~R~a~~~l~~~~-----~~~~------------- 67 (269)
++++++|||++++ |++.+| .+||+|+|++|| |||||||++.+++..+. +.+.
T Consensus 47 ~~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~ 126 (404)
T cd06447 47 SHGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASE 126 (404)
T ss_pred cCCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhh
Confidence 3568999999998 887665 699999999999 99999999999987532 1111
Q ss_pred -------CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhh-C
Q psy5622 68 -------KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL-G 139 (269)
Q Consensus 68 -------~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~ 139 (269)
..+||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.|||+|+.++++++++.+.+++++++. +
T Consensus 127 ~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~~~~a~~~a~~la~~~~~ 206 (404)
T cd06447 127 KFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETDYSKAVEEGRKQAAADPM 206 (404)
T ss_pred hhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCC
Confidence 24899999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred CeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC----C-----CCEEEEecCcchHHHHHHhHHHHHHhcCCCCC
Q psy5622 140 LTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA----N-----IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG 210 (269)
Q Consensus 140 ~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~----~-----~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~ 210 (269)
++|+++ ++++..++||+|+++||++|++ . ||+||+|+|+||+++|++++||++. .
T Consensus 207 ~~~v~~----------~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~------~ 270 (404)
T cd06447 207 CYFVDD----------ENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIF------G 270 (404)
T ss_pred eEeCCC----------CCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhc------C
Confidence 677777 7788899999999999999996 3 4589999999999999999999862 6
Q ss_pred CCcEEEEEcCCCChHHHHHHHcCCCCCCC------CcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622 211 LEIVDQGVESDRCASFSTAIKHGKPTPVS------VQPTLADGLAVPLVGWNAFETAAPLIDKMF 269 (269)
Q Consensus 211 ~~~~vigVe~~~~~~~~~~~~~g~~~~~~------~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~ 269 (269)
|.++||+|||++++++..+++.|.+.+.. ..+|++|||.++.++..+|+.+++++|+++
T Consensus 271 p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v 335 (404)
T cd06447 271 DNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIY 335 (404)
T ss_pred CCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEE
Confidence 78999999999999998899988765432 257999999999999999999999999864
No 26
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.8e-50 Score=369.91 Aligned_cols=224 Identities=34% Similarity=0.522 Sum_probs=206.2
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ + +||+|+|++|||||||||++.+++..+.+++..++||++|+||||+|+|++|+.+|++|+|
T Consensus 36 ~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~I 109 (349)
T PRK08813 36 YLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAIT 109 (349)
T ss_pred cCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 45799999976 4 4999999999999999999999999987776666899999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|||+++++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++ |+||++++||+|+++||++|.
T Consensus 110 vvP~~~~~~K~~~i~~~GAeVv~~g~~~~~a~~~a~~la~~~g~~~v~~----------~~np~~i~G~~Tig~EI~e~~ 179 (349)
T PRK08813 110 VMPHGAPQTKIAGVAHWGATVRQHGNSYDEAYAFARELADQNGYRFLSA----------FDDPDVIAGQGTVGIELAAHA 179 (349)
T ss_pred EEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCc----------cCChHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999984
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 256 (269)
||+||+|+|+||+++|++.++|+. .++||+|||+++++++.+++ |.+...+..+|++||+.++.++..
T Consensus 180 --pD~VvvpvGgGGliaGia~~lk~~---------~~rVigVqpega~~~~~s~~-g~~~~~~~~~tiadgl~~~~p~~~ 247 (349)
T PRK08813 180 --PDVVIVPIGGGGLASGVALALKSQ---------GVRVVGAQVEGVDSMARAIR-GDLREIAPVATLADGVKVKIPGFL 247 (349)
T ss_pred --CCEEEEEeCccHHHHHHHHHHhcC---------CCEEEEEEECCCchHHHHHc-CCCcccCCCCceecccccCCcchh
Confidence 899999999999999999999854 58999999999999999997 665544445799999999888899
Q ss_pred HHHHHhhhhcccC
Q psy5622 257 AFETAAPLIDKMF 269 (269)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (269)
++..+++++|+++
T Consensus 248 ~~~i~~~~vd~vv 260 (349)
T PRK08813 248 TRRLCSSLLDDVV 260 (349)
T ss_pred HHHHHHHhCCeEE
Confidence 9999999998864
No 27
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=3e-50 Score=363.85 Aligned_cols=234 Identities=45% Similarity=0.677 Sum_probs=217.7
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.++++.++|+++|+||||.|+|++|+++|++|++
T Consensus 14 ~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~i 93 (304)
T cd01562 14 VVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPATI 93 (304)
T ss_pred cCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 45899999998 98888999999999999999999999999999987666577899999999999999999999999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV 176 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql 176 (269)
|+|++.++.|+++|+.+||+|+.++++++++.+.+++++++.+++|+++ ++|+..++|++++++||++|+
T Consensus 94 vvp~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~la~~~~~~~~~~----------~~n~~~~~g~~~~~~Ei~~q~ 163 (304)
T cd01562 94 VMPETAPAAKVDATRAYGAEVVLYGEDFDEAEAKARELAEEEGLTFIHP----------FDDPDVIAGQGTIGLEILEQV 163 (304)
T ss_pred EECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCC----------CCCcchhccHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 256 (269)
+.||+||+|+|+||+++|++++||++ .+.+|+|+|||.++++++.+++.|...+.+..+|+++|++++.++..
T Consensus 164 ~~~d~vv~~vGtGgt~~Gi~~~lk~~-------~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~ 236 (304)
T cd01562 164 PDLDAVFVPVGGGGLIAGIATAVKAL-------SPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGEL 236 (304)
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHh-------CCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHH
Confidence 88999999999999999999999998 89999999999999999999999887666556899999998888887
Q ss_pred HHHHHhhhhccc
Q psy5622 257 AFETAAPLIDKM 268 (269)
Q Consensus 257 ~~~~~~~~~~~~ 268 (269)
.++..++++|++
T Consensus 237 ~~~~~~~~~~~~ 248 (304)
T cd01562 237 TFEIIRKLVDDV 248 (304)
T ss_pred HHHHHHHhCCeE
Confidence 788888877765
No 28
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=6.3e-50 Score=363.04 Aligned_cols=230 Identities=35% Similarity=0.475 Sum_probs=211.1
Q ss_pred ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622 17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95 (269)
Q Consensus 17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 95 (269)
...++|||++++ +... +.+||+|+|++|||||||||++.+++.++.+ +.++|+++|+||||+|+|++|+++|++|+
T Consensus 19 ~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~--~~~~vv~aSsGN~g~a~A~~a~~~G~~~~ 95 (310)
T PRK08246 19 PHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV--PAAGVVAASGGNAGLAVAYAAAALGVPAT 95 (310)
T ss_pred CcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc--cCCeEEEeCCCHHHHHHHHHHHHcCCCEE
Confidence 345899999998 7765 7899999999999999999999999988643 67789999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622 96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ 175 (269)
Q Consensus 96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q 175 (269)
||||+.+++.|+.+++.|||+|+.++++++++.+.+.+++++.+++|+++ |+||++++||+++++||++|
T Consensus 96 iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~----------~~n~~~i~g~~t~~~Ei~eq 165 (310)
T PRK08246 96 VFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAAETGALLCHA----------YDQPEVLAGAGTLGLEIEEQ 165 (310)
T ss_pred EEECCCCcHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHHhcCCEeCCC----------CCChhhhcchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999889999999 89999999999999999999
Q ss_pred cCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCH
Q psy5622 176 VANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGW 255 (269)
Q Consensus 176 l~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~ 255 (269)
++.||+||+|+|+||+++|++.+|+ +.+++++|||+++++++.+|+.|++.+.+...+.++++..+.++.
T Consensus 166 ~~~~D~iv~~vG~GG~~~Gi~~~~~----------~~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~ 235 (310)
T PRK08246 166 APGVDTVLVAVGGGGLIAGIAAWFE----------GRARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGE 235 (310)
T ss_pred cCCCCEEEEecCccHHHHHHHHHhc----------CCCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccH
Confidence 9999999999999999999999984 248999999999999999999998877666667788888888888
Q ss_pred HHHHHHhhhhcccC
Q psy5622 256 NAFETAAPLIDKMF 269 (269)
Q Consensus 256 ~~~~~~~~~~~~~~ 269 (269)
.+|+.+++++|+++
T Consensus 236 ~~~~~~~~~~~~~~ 249 (310)
T PRK08246 236 IAFALARAHVVTSV 249 (310)
T ss_pred HHHHHHHhcCCeEE
Confidence 99999999988764
No 29
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=1.9e-50 Score=379.93 Aligned_cols=239 Identities=23% Similarity=0.203 Sum_probs=211.6
Q ss_pred eeccccCCcccccc-ccccCC--------CeEEEEeCCCCC-CCchhhHHHHHHHHhchH----hcC-------------
Q psy5622 15 FVIRDQWFNSKKSH-LSELTK--------MEIFLKKDFFQV-TGSFKERGACYALLMLSE----DQK------------- 67 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g--------~~i~~K~E~~np-tGS~K~R~a~~~l~~~~~----~~~------------- 67 (269)
.++++++|||++++ |++.+| .+||+|+|++|| |||||||++.+++..+.+ +.+
T Consensus 69 ~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~ 148 (441)
T PRK02991 69 ATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLAS 148 (441)
T ss_pred ccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcc
Confidence 35678999999998 887665 699999999999 999999999999876422 111
Q ss_pred --------CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhh-
Q psy5622 68 --------KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL- 138 (269)
Q Consensus 68 --------~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~- 138 (269)
..+||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.|||+|+.++++++++.+.+++++++.
T Consensus 149 ~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~~~~a~~~A~~la~~~~ 228 (441)
T PRK02991 149 PEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGDYGVAVEEGRKAAESDP 228 (441)
T ss_pred hhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcC
Confidence 13799999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC----C-----CCEEEEecCcchHHHHHHhHHHHHHhcCCCC
Q psy5622 139 GLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA----N-----IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTV 209 (269)
Q Consensus 139 ~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~----~-----~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~ 209 (269)
+++|+++ ++++..++||+|+++||++|++ . ||+||+|+|+||+++|++.+||++.
T Consensus 229 ~~~~~~~----------~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~------ 292 (441)
T PRK02991 229 NCYFIDD----------ENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAF------ 292 (441)
T ss_pred CeEeCCC----------CCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhc------
Confidence 4777888 7888999999999999999996 2 6689999999999999999999872
Q ss_pred CCCcEEEEEcCCCChHHHHHHHcCCCCCCC------CcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622 210 GLEIVDQGVESDRCASFSTAIKHGKPTPVS------VQPTLADGLAVPLVGWNAFETAAPLIDKMF 269 (269)
Q Consensus 210 ~~~~~vigVe~~~~~~~~~~~~~g~~~~~~------~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~ 269 (269)
.+.+++|+|||+++++++.+++.|++...+ ...|+++||+++.++..+|+.+++++|+++
T Consensus 293 ~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v 358 (441)
T PRK02991 293 GDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVY 358 (441)
T ss_pred CCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEE
Confidence 578999999999999999999999864332 246999999999999999999999998864
No 30
>KOG1251|consensus
Probab=100.00 E-value=9.7e-51 Score=344.87 Aligned_cols=234 Identities=36% Similarity=0.549 Sum_probs=225.3
Q ss_pred ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622 19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV 97 (269)
Q Consensus 19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv 97 (269)
...||.+.++ |.+..|.+||+|+|.+|.+||||.|+|.+.++.+..+++.+.+++.||||||+|+|++|+.+|+|++|+
T Consensus 23 ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~kgvithSSGNHaqAlalaAk~~giPa~IV 102 (323)
T KOG1251|consen 23 IHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRAKGVITHSSGNHAQALALAAKILGIPATIV 102 (323)
T ss_pred hccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhhcCceEeecCCcHHHHHHHHHHhcCCCeEEE
Confidence 3589999998 999999999999999999999999999999999987889999999999999999999999999999999
Q ss_pred EcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC
Q psy5622 98 MPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA 177 (269)
Q Consensus 98 vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~ 177 (269)
||.++|..|+..++.|||+|++++...+++.+.++++.++.+.+.+++ |++|..++|+.|++.|+++|.+
T Consensus 103 vP~~AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~P----------y~~p~vIaGqgTiA~ElleqVg 172 (323)
T KOG1251|consen 103 VPKDAPICKVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLIHP----------YNHPSVIAGQGTIALELLEQVG 172 (323)
T ss_pred ecCCChHHHHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEeCC----------CCCcceeeccchHHHHHHHhhC
Confidence 999999999999999999999999888899999999999999999999 9999999999999999999999
Q ss_pred CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHHH
Q psy5622 178 NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNA 257 (269)
Q Consensus 178 ~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~ 257 (269)
.+|++|+|+|+||+++|++.+.+.+ .|.++|++|||++.+.-++++..|.....+..+|||||......++.+
T Consensus 173 ~iDalfvpvgGGGllSgvAlaa~~l-------~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t 245 (323)
T KOG1251|consen 173 EIDALFVPVGGGGLLSGVALAAKSL-------KPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLT 245 (323)
T ss_pred ccceEEEeecCcchhhHHHHHHhcc-------CCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccc
Confidence 9999999999999999999999999 999999999999999999999999988888889999999988799999
Q ss_pred HHHHhhhhcccC
Q psy5622 258 FETAAPLIDKMF 269 (269)
Q Consensus 258 ~~~~~~~~~~~~ 269 (269)
|+++|+++||++
T Consensus 246 ~pIir~~vddi~ 257 (323)
T KOG1251|consen 246 WPIIRDLVDDIL 257 (323)
T ss_pred hHHHHHHhhhhe
Confidence 999999999985
No 31
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=1.4e-49 Score=372.00 Aligned_cols=241 Identities=22% Similarity=0.284 Sum_probs=214.4
Q ss_pred ceeccccCCcccccc-ccccCCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcC
Q psy5622 14 GFVIRDQWFNSKKSH-LSELTKM-EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLN 91 (269)
Q Consensus 14 ~~~~~~~~TPl~~~~-l~~~~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G 91 (269)
.+++++|+|||++++ |++.+|. +||+|+|++|||||||||++.+++.++. +.+.++|+++|+||+|+|+|++|+++|
T Consensus 60 ~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~-~~g~~~vv~aSsGN~g~alA~~aa~~G 138 (397)
T PRK06260 60 IVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKAL-ELGVKTVACASTGNTSASLAAYAARAG 138 (397)
T ss_pred cccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHH-HcCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence 477999999999998 9888898 9999999999999999999999999986 455679999999999999999999999
Q ss_pred CCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 92 IPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 92 ~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
++|+||||++ +++.|+.+++.|||+|+.++++++++.+.+++++++.+++++++ + ||++++||+|+++
T Consensus 139 ~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~g~y~~~~----------~-np~~~~G~~t~a~ 207 (397)
T PRK06260 139 LKCYVLLPAGKVALGKLAQALLHGAKVLEVDGNFDDALDMVVELAKEGKIYLLNS----------I-NPFRLEGQKTIGF 207 (397)
T ss_pred CcEEEEEeCCCccHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhCCEEeecC----------C-CchhhcchhhHHH
Confidence 9999999997 78999999999999999999999999999999999888777776 5 8999999999999
Q ss_pred HHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCC--CCCcccccc
Q psy5622 171 EIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTP--VSVQPTLAD 246 (269)
Q Consensus 171 EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~--~~~~~t~a~ 246 (269)
||++|++ .||+||+|+|+||+++|++++|+++ ...|++.+.+|+|+|||++++++.++++.|.... ....+|+++
T Consensus 208 Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l-~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~ 286 (397)
T PRK06260 208 EIADQLGWEVPDRVVLPVGNAGNISAIWKGFKEL-VELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVAT 286 (397)
T ss_pred HHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHH-HhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceee
Confidence 9999997 6999999999999999999999998 6678887778999999999999999999887642 334679999
Q ss_pred cccCCCCC--HHHHHHHhhhhcc
Q psy5622 247 GLAVPLVG--WNAFETAAPLIDK 267 (269)
Q Consensus 247 gl~~~~~~--~~~~~~~~~~~~~ 267 (269)
++.++.|. ..+++.+++..++
T Consensus 287 ~i~i~~p~~~~~~~~~l~~~~g~ 309 (397)
T PRK06260 287 AIRIGNPVNAPKALRAIRESGGT 309 (397)
T ss_pred eeEeCCCCCHHHHHHHHHHHCCE
Confidence 99876553 4456666665544
No 32
>PLN02569 threonine synthase
Probab=100.00 E-value=2.3e-49 Score=376.38 Aligned_cols=229 Identities=23% Similarity=0.207 Sum_probs=208.6
Q ss_pred eeccccCCcccccc-cccc-CCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHhcC----CccEEEeCCChHHHHHHHHH
Q psy5622 15 FVIRDQWFNSKKSH-LSEL-TKM-EIFLKKDFFQVTGSFKERGACYALLMLSEDQK----KKGVISASLGNHAQAMCYHG 87 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~----~~~vv~~SsGN~g~alA~~a 87 (269)
+++++|+|||++++ |.+. +|+ +||+|+|++|||||||||++..++..+.+.+. ...|+++|+||+|.|+|++|
T Consensus 127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya 206 (484)
T PLN02569 127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC 206 (484)
T ss_pred eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence 78999999999998 8887 886 89999999999999999999999998754332 26799999999999999999
Q ss_pred HhcCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccch
Q psy5622 88 SRLNIPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQG 166 (269)
Q Consensus 88 ~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~ 166 (269)
+++|++|+||||++ .+..|+.+++.|||+|+.++++++++.+.+++++++.+++++++ + ||++++||+
T Consensus 207 a~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~~d~a~~~a~e~~~~~~~~~~n~----------~-Np~~ieG~k 275 (484)
T PLN02569 207 AAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTDFDGCMRLIREVTAELPIYLANS----------L-NSLRLEGQK 275 (484)
T ss_pred HhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEecCC----------C-CcchhHhHH
Confidence 99999999999997 78899999999999999999999999999999998888888888 6 999999999
Q ss_pred hHHHHHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCC--CCCCCcc
Q psy5622 167 TVGLEIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP--TPVSVQP 242 (269)
Q Consensus 167 t~~~EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~--~~~~~~~ 242 (269)
|+++||++|++ .||+||+|+|+||+++|++++|+++ ...|++.+.+|+++|||++|++++++|+.|.. .+....+
T Consensus 276 T~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel-~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~ 354 (484)
T PLN02569 276 TAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMC-KELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANP 354 (484)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHH-HHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCC
Confidence 99999999998 3999999999999999999999998 78899888899999999999999999999864 3334467
Q ss_pred cccccccCCCCCH
Q psy5622 243 TLADGLAVPLVGW 255 (269)
Q Consensus 243 t~a~gl~~~~~~~ 255 (269)
|++++|.++.|..
T Consensus 355 T~A~gi~i~~P~~ 367 (484)
T PLN02569 355 TFASAIQIGDPVS 367 (484)
T ss_pred ccchhhccCCCcc
Confidence 9999999887765
No 33
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2e-49 Score=371.73 Aligned_cols=238 Identities=21% Similarity=0.179 Sum_probs=207.3
Q ss_pred eccccCCcccccc-ccccC--------CCeEEEEeCCCCC-CCchhhHHHHHHHHhch-----HhcC-------------
Q psy5622 16 VIRDQWFNSKKSH-LSELT--------KMEIFLKKDFFQV-TGSFKERGACYALLMLS-----EDQK------------- 67 (269)
Q Consensus 16 ~~~~~~TPl~~~~-l~~~~--------g~~i~~K~E~~np-tGS~K~R~a~~~l~~~~-----~~~~------------- 67 (269)
++++++|||++++ +++.+ +.+||+|+|++|| |||||||++.+++..+. +.+.
T Consensus 65 ~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~ 144 (431)
T TIGR02035 65 TGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEK 144 (431)
T ss_pred cCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcch
Confidence 3478899999998 88744 5699999999999 99999999999987531 2221
Q ss_pred -------CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhC-
Q psy5622 68 -------KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELG- 139 (269)
Q Consensus 68 -------~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~- 139 (269)
..+|+++|+||||+|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++++++++.+.+++++++.+
T Consensus 145 ~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 145 KFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESDYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCC
Confidence 247999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC---------CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC
Q psy5622 140 LTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA---------NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG 210 (269)
Q Consensus 140 ~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~---------~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~ 210 (269)
.+|+++ ++.+..++||+|++.||++|++ .||+|++|+|+||+++|++++||++. +
T Consensus 225 ~~~~d~----------~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~------~ 288 (431)
T TIGR02035 225 CYFVDD----------ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAF------G 288 (431)
T ss_pred eEECCC----------CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhc------C
Confidence 455666 4445567999999999999994 46799999999999999999999963 6
Q ss_pred CCcEEEEEcCCCChHHHHHHHcCCCCCCC------CcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622 211 LEIVDQGVESDRCASFSTAIKHGKPTPVS------VQPTLADGLAVPLVGWNAFETAAPLIDKMF 269 (269)
Q Consensus 211 ~~~~vigVe~~~~~~~~~~~~~g~~~~~~------~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~ 269 (269)
|++++|+|||++++++..+++.|...... ...|++|||+++.|+..+++.+++++|+++
T Consensus 289 ~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv 353 (431)
T TIGR02035 289 DNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIY 353 (431)
T ss_pred CCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEE
Confidence 78999999999999999999988754322 236999999999999999999999999864
No 34
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=3.7e-49 Score=360.02 Aligned_cols=243 Identities=25% Similarity=0.313 Sum_probs=215.7
Q ss_pred cceeccccCCcccccc-ccccCC-CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhc
Q psy5622 13 LGFVIRDQWFNSKKSH-LSELTK-MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRL 90 (269)
Q Consensus 13 ~~~~~~~~~TPl~~~~-l~~~~g-~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~ 90 (269)
..+.+++|+|||++++ |++..| .+||+|+|++|||||||||++.+++.++.+ .+.++|+++|+||||+|+|++|+.+
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~-~g~~~vv~~SsGN~g~alA~~a~~~ 92 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKE-LGVKAVACASTGNTSASLAAYAARA 92 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHHHHHHc
Confidence 4478899999999998 888776 699999999999999999999999999864 4578999999999999999999999
Q ss_pred CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 91 NIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 91 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
|++|++|||+++++.|++.|+.+||+|+.++++++++.+.+++++++. ++|+++ ++||.+++||.+++.
T Consensus 93 G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~~~~~~~~~a~~~~~~~-~~~~~~----------~~n~~~~~g~~t~~~ 161 (324)
T cd01563 93 GIKCVVFLPAGKALGKLAQALAYGATVLAVEGNFDDALRLVRELAEEN-WIYLSN----------SLNPYRLEGQKTIAF 161 (324)
T ss_pred CCceEEEEeCCCCHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHhc-CeeccC----------CCCcceecchhhhHH
Confidence 999999999999999999999999999999999999999999999887 888998 899999999999999
Q ss_pred HHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCC--CCCCCcccccc
Q psy5622 171 EIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP--TPVSVQPTLAD 246 (269)
Q Consensus 171 EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~--~~~~~~~t~a~ 246 (269)
||++|++ .+|+||+|+|+||+++|++.++|++ ...|..++.++||+|||.++++++.+++.|.+ ...+..+|+++
T Consensus 162 Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~-~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~ 240 (324)
T cd01563 162 EIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKEL-KELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIAT 240 (324)
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHH-HhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceee
Confidence 9999997 6999999999999999999999997 44555567899999999999999999998865 33445679999
Q ss_pred cccCCCCC--HHHHHHHhhhhccc
Q psy5622 247 GLAVPLVG--WNAFETAAPLIDKM 268 (269)
Q Consensus 247 gl~~~~~~--~~~~~~~~~~~~~~ 268 (269)
|+.++.+. ...++.++++.|++
T Consensus 241 gl~~~~~~~~~~~~~~~~~~~~~~ 264 (324)
T cd01563 241 AIRIGNPASGPKALRAVRESGGTA 264 (324)
T ss_pred eeecCCCCCHHHHHHHHHHhCCEE
Confidence 99877654 34566676666654
No 35
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=2.4e-49 Score=362.82 Aligned_cols=231 Identities=32% Similarity=0.419 Sum_probs=208.7
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC-CccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK-KKGVISASLGNHAQAMCYHGSRLNIPVT 95 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~-~~~vv~~SsGN~g~alA~~a~~~G~~~~ 95 (269)
..++|||++++ |++.+|++||+|+|++|||||||||++.+++.++.+++. .++|+++|+||||+|+|++|+++|++|+
T Consensus 20 ~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 99 (338)
T PRK06608 20 YLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTR 99 (338)
T ss_pred cCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEE
Confidence 45899999998 999899999999999999999999999999999875544 3789999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622 96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ 175 (269)
Q Consensus 96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q 175 (269)
+|||+++++.|+++++.|||+|+.++. .+++.+.+++ +++.+++|+++ ++|+.+++|++++++||++|
T Consensus 100 vv~p~~~~~~k~~~l~~~GA~V~~~~~-~~~~~~~a~~-~~~~~~~~~~~----------~~~~~~~~g~~t~a~Ei~~q 167 (338)
T PRK06608 100 IYLPLNTSKVKQQAALYYGGEVILTNT-RQEAEEKAKE-DEEQGFYYIHP----------SDSDSTIAGAGTLCYEALQQ 167 (338)
T ss_pred EEECCCCCHHHHHHHHhCCCEEEEECC-HHHHHHHHHH-HHhCCCEEcCC----------CCCHHHhccHHHHHHHHHHh
Confidence 999999999999999999999999975 4677777777 66678899999 88999999999999999999
Q ss_pred cC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCC-CcccccccccCCCC
Q psy5622 176 VA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVS-VQPTLADGLAVPLV 253 (269)
Q Consensus 176 l~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~-~~~t~a~gl~~~~~ 253 (269)
++ .||+||+|+|+||+++|+++++|+. ++.+++|+|||.++++++.+++.|++.... ..+|+++|+.++.+
T Consensus 168 ~~~~~D~vv~~vG~GGt~~Gi~~~~k~~-------~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~ 240 (338)
T PRK06608 168 LGFSPDAIFASCGGGGLISGTYLAKELI-------SPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSV 240 (338)
T ss_pred cCCCcCEEEEeechhHHHHHHHHHHHhc-------CCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCC
Confidence 98 8999999999999999999999988 899999999999999999999999765432 34789999999888
Q ss_pred CHHHHHHHhhhhccc
Q psy5622 254 GWNAFETAAPLIDKM 268 (269)
Q Consensus 254 ~~~~~~~~~~~~~~~ 268 (269)
+..+|+.+++ +|++
T Consensus 241 ~~~~~~~~~~-~d~~ 254 (338)
T PRK06608 241 SARTFEYLKK-LDDF 254 (338)
T ss_pred CHHHHHHHHh-CCCE
Confidence 8888888776 5665
No 36
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=4.6e-49 Score=373.03 Aligned_cols=234 Identities=22% Similarity=0.219 Sum_probs=209.9
Q ss_pred eeccccCCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622 15 FVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV 94 (269)
Q Consensus 15 ~~~~~~~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~ 94 (269)
+++++|+|||+++++++.+|.+||+|+|++|||||||||++.+++.++. +.+.++|+++|+||+|+|+|++|+++|++|
T Consensus 60 v~l~~G~TPLv~~~~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~-~~g~~~vv~aSsGN~g~alA~~aa~~G~~~ 138 (442)
T PRK05638 60 ISLGEGGTPLIRARISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGL-PYAANGFIVASDGNAAASVAAYSARAGKEA 138 (442)
T ss_pred cccCCCCCcEEcccchHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHH-HcCCCEEEEeCCChHHHHHHHHHHHcCCCE
Confidence 6789999999998876678889999999999999999999999999886 456788999999999999999999999999
Q ss_pred EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622 95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD 174 (269)
Q Consensus 95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ 174 (269)
+||||+++++.|+.+++.|||+|+.++++++++.+.+++++++.+++++++ ++||++++|++|+++||++
T Consensus 139 ~i~vp~~~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~~~~~~~~----------~~np~~~eG~~t~a~Ei~e 208 (442)
T PRK05638 139 FVVVPRKVDKGKLIQMIAFGAKIIRYGESVDEAIEYAEELARLNGLYNVTP----------EYNIIGLEGQKTIAFELWE 208 (442)
T ss_pred EEEEeCCCCHHHHHHHHhcCcEEEEECCCHHHHHHHHHHHHHhCCeEecCC----------CCChhHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888888998 8899999999999999999
Q ss_pred hcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCC
Q psy5622 175 QVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVG 254 (269)
Q Consensus 175 ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~ 254 (269)
|++ ||+||+|+|+||+++|++++|+++ ...|++...+++++|||++++++..+++.+... ...|+++|+.++.|.
T Consensus 209 q~~-pD~vv~pvG~Gg~~~Gi~~gfkel-~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~---~~~t~a~gl~~~~p~ 283 (442)
T PRK05638 209 EIN-PTHVIVPTGSGSYLYSIYKGFKEL-LEIGVIEEIPKLIAVQTERCNPIASEILGNKTK---CNETKALGLYVKNPV 283 (442)
T ss_pred HHC-cCEEEEeCCchHHHHHHHHHHHHH-HhCCcccCCCeEEEEecCCCCHHHHHHhcCCCC---CCCceeeeEeeCCCC
Confidence 998 999999999999999999999998 566777777899999999999999999876433 346889998766553
Q ss_pred --HHHHHHHhhh
Q psy5622 255 --WNAFETAAPL 264 (269)
Q Consensus 255 --~~~~~~~~~~ 264 (269)
..+++.+++.
T Consensus 284 ~~~~~~~~i~~~ 295 (442)
T PRK05638 284 MKEYVSEAIKES 295 (442)
T ss_pred CHHHHHHHHHHh
Confidence 3455666554
No 37
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=1.7e-48 Score=358.60 Aligned_cols=226 Identities=24% Similarity=0.320 Sum_probs=201.7
Q ss_pred eeccccCCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622 15 FVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV 94 (269)
Q Consensus 15 ~~~~~~~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~ 94 (269)
++++||.|||+++ +.+||+|+|++|||||||||++.+++.++. +.+.++|+++|+||+|+|+|++|+++|++|
T Consensus 58 ~sl~eg~Tpl~~~------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~-~~g~~~vv~aSsGN~g~alA~~aa~~G~~~ 130 (347)
T PRK08329 58 PHLTPPITPTVKR------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLK-EEGINEVVIDSSGNAALSLALYSLSEGIKV 130 (347)
T ss_pred CcCCCCCCccccC------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHH-HcCCCEEEEECCCcHHHHHHHHHHHcCCcE
Confidence 6899999999985 458999999999999999999999999986 455689999999999999999999999999
Q ss_pred EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622 95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD 174 (269)
Q Consensus 95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ 174 (269)
+||||+++++.|+.+++.|||+|+.++++++++.+.+++++++.+++|+++ +.||++++|++|+++||++
T Consensus 131 ~v~vp~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~~~~~~~~~----------~~np~~~eG~~t~~~Ei~e 200 (347)
T PRK08329 131 HVFVSYNASKEKISLLSRLGAELHFVEGDRMEVHEEAVKFSKRNNIPYVSH----------WLNPYFLEGTKTIAYEIYE 200 (347)
T ss_pred EEEECCCChHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeeccC----------CCCchhhccchhHHHHHHH
Confidence 999999999999999999999999999888888889999999888888888 7899999999999999999
Q ss_pred hcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCC
Q psy5622 175 QVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVG 254 (269)
Q Consensus 175 ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~ 254 (269)
|++.||+||+|+|+|++++|++++|+++ ...|.+++.+|+++|||+++.++...+ ...+|+++|+.++.|.
T Consensus 201 ql~~pD~vvvpvG~Gg~l~Gi~~g~kel-~~~g~i~~~p~ii~Vq~~g~~~~~~~~--------~~~~t~a~gi~i~~~~ 271 (347)
T PRK08329 201 QIGVPDYAFVPVGSGTLFLGIWKGFKEL-HEMGEISKMPKLVAVQAEGYESLCKRS--------KSENKLADGIAIPEPP 271 (347)
T ss_pred HcCCCCEEEEeCCcHHHHHHHHHHHHHH-HhcCCCCCCCEEEEEecCCCchHHhcc--------CCCCceeeeEEeCCCC
Confidence 9999999999999999999999999998 667888888999999999999886421 1346899999888764
Q ss_pred H--HHHHHHhhhhc
Q psy5622 255 W--NAFETAAPLID 266 (269)
Q Consensus 255 ~--~~~~~~~~~~~ 266 (269)
. .+++.+++..+
T Consensus 272 ~~~~~~~~l~~~~g 285 (347)
T PRK08329 272 RKEEMLRALEESNG 285 (347)
T ss_pred CHHHHHHHHHHhCC
Confidence 3 35666666544
No 38
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.3e-48 Score=365.08 Aligned_cols=242 Identities=21% Similarity=0.257 Sum_probs=211.1
Q ss_pred cccCCcccccc-ccccCCC-eEEEEeCCC-CCCCchhhHHHHHHHHhchHhcCC----------------------ccEE
Q psy5622 18 RDQWFNSKKSH-LSELTKM-EIFLKKDFF-QVTGSFKERGACYALLMLSEDQKK----------------------KGVI 72 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~-~i~~K~E~~-nptGS~K~R~a~~~l~~~~~~~~~----------------------~~vv 72 (269)
..++|||++++ |++.+|+ +||+|+|++ |||||||||++.+.+..+..+... .+|+
T Consensus 41 ~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 120 (399)
T PRK08206 41 GYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFA 120 (399)
T ss_pred CCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEE
Confidence 34699999998 9999994 999999997 599999999999888876532211 2599
Q ss_pred EeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCcc
Q psy5622 73 SASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLS 152 (269)
Q Consensus 73 ~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (269)
++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.|||+|+.++++++++.+.+.+++++.+++|+++ ..
T Consensus 121 ~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~v~~-----~~ 195 (399)
T PRK08206 121 TATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGNYDDSVRLAAQEAQENGWVVVQD-----TA 195 (399)
T ss_pred EeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHHcCCEEecC-----cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999989888863 12
Q ss_pred ccCCCC--cchhccchhHHHHHHhhcCC----CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622 153 VLGYDH--PDIMAGQGTVGLEIVDQVAN----IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF 226 (269)
Q Consensus 153 ~~g~~n--~~~~~g~~t~~~EI~~ql~~----~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~ 226 (269)
|.+|+| +..++||+|+++||++|++. ||+||+|+|+||+++|++.+++++. ..+.+++|+|||++++++
T Consensus 196 ~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~-----~~~~~kii~Vep~gs~~l 270 (399)
T PRK08206 196 WEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVY-----GEQRPHFVVVEPDQADCL 270 (399)
T ss_pred ccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHc-----CCCCCEEEEECCCCCchH
Confidence 233765 66899999999999999974 9999999999999999999999881 024799999999999999
Q ss_pred HHHHHcCCCCCCCC-cccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622 227 STAIKHGKPTPVSV-QPTLADGLAVPLVGWNAFETAAPLIDKMF 269 (269)
Q Consensus 227 ~~~~~~g~~~~~~~-~~t~a~gl~~~~~~~~~~~~~~~~~~~~~ 269 (269)
+++++.|++...+. .+|+++|+.++.|+..+|+.+++++|+++
T Consensus 271 ~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v 314 (399)
T PRK08206 271 YQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFI 314 (399)
T ss_pred HHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEE
Confidence 99999998765443 36899999999999999999999998764
No 39
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=3.4e-48 Score=359.24 Aligned_cols=239 Identities=19% Similarity=0.254 Sum_probs=210.5
Q ss_pred cCCcccccc-ccccCCC-eEEEEeCCCCC-CCchhhHHHHHHHHhchHhc----------------------CCccEEEe
Q psy5622 20 QWFNSKKSH-LSELTKM-EIFLKKDFFQV-TGSFKERGACYALLMLSEDQ----------------------KKKGVISA 74 (269)
Q Consensus 20 ~~TPl~~~~-l~~~~g~-~i~~K~E~~np-tGS~K~R~a~~~l~~~~~~~----------------------~~~~vv~~ 74 (269)
.+|||++++ |++.+|. +||+|+|++|+ |||||+|++.+.+..+.++. +..+|+++
T Consensus 21 ~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~a 100 (376)
T TIGR01747 21 RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATA 100 (376)
T ss_pred CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEE
Confidence 499999998 9999995 99999999985 89999999999998874421 25689999
Q ss_pred CCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCcccc
Q psy5622 75 SLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVL 154 (269)
Q Consensus 75 SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
|+||||+|+|++|+.+|++|+||||+++++.|+..|+.|||+|+.++++++++.+.+++++++.+++++++ ..+.
T Consensus 101 SsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~~~~a~~~a~~~~~~~g~~~~~~-----~~~~ 175 (376)
T TIGR01747 101 TDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMNYDDTVRLAMQMAQQHGWVVVQD-----TAWE 175 (376)
T ss_pred CccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCcEEecc-----cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888888763 1223
Q ss_pred CCCC--cchhccchhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCC-CcEEEEEcCCCChHH
Q psy5622 155 GYDH--PDIMAGQGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGL-EIVDQGVESDRCASF 226 (269)
Q Consensus 155 g~~n--~~~~~g~~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~-~~~vigVe~~~~~~~ 226 (269)
+|+| |+.++||+|+++||++|++ .||+||+|+|+||+++|++.++++.. .+ .+++++|||++++++
T Consensus 176 ~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~------~~~~p~vi~Vep~ga~~~ 249 (376)
T TIGR01747 176 GYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVY------SENNPHSIVVEPDKADCL 249 (376)
T ss_pred ccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhc------CCCCCEEEEEeeCCCCHH
Confidence 3655 7789999999999999996 69999999999999999999998772 33 379999999999999
Q ss_pred HHHHHc--CCCCCCCC-cccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622 227 STAIKH--GKPTPVSV-QPTLADGLAVPLVGWNAFETAAPLIDKMF 269 (269)
Q Consensus 227 ~~~~~~--g~~~~~~~-~~t~a~gl~~~~~~~~~~~~~~~~~~~~~ 269 (269)
+++++. |++.+.+. .+|+++||.++.|+..+|+.+++.+++++
T Consensus 250 ~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v 295 (376)
T TIGR01747 250 YQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFI 295 (376)
T ss_pred HHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEE
Confidence 999977 77666553 57999999999999999999999988764
No 40
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=9.2e-48 Score=350.24 Aligned_cols=207 Identities=20% Similarity=0.229 Sum_probs=191.8
Q ss_pred cccCCcccccc-ccccCC-CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622 18 RDQWFNSKKSH-LSELTK-MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g-~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 95 (269)
..|+|||++++ |++.+| .+||+|+|++|||||||||++.+++.++. +.+.++|+++|+||||+|+|++|+.+|++|+
T Consensus 12 ~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~-~~g~~~lv~aSsGN~g~alA~~aa~~G~~~~ 90 (319)
T PRK06381 12 PPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAM-RLGYSGITVGTCGNYGASIAYFARLYGLKAV 90 (319)
T ss_pred cCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHH-HcCCCEEEEeCCcHHHHHHHHHHHHcCCcEE
Confidence 36899999998 998888 49999999999999999999999999985 5567899999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCC-Cc-chhccchhHHHHHH
Q psy5622 96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYD-HP-DIMAGQGTVGLEIV 173 (269)
Q Consensus 96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~-n~-~~~~g~~t~~~EI~ 173 (269)
||||..++..|+++|+.|||+|+.++++++++.+.+++++++.+++++++ ++ || .+++||+++++||+
T Consensus 91 ivvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~n~~~~~~G~~t~a~Ei~ 160 (319)
T PRK06381 91 IFIPRSYSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFAKENGIYDANP----------GSVNSVVDIEAYSAIAYEIY 160 (319)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEcCCCHHHHHHHHHHHHHHcCcEecCC----------CCCCcchHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888877 54 76 58999999999999
Q ss_pred hhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCC
Q psy5622 174 DQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPT 236 (269)
Q Consensus 174 ~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~ 236 (269)
+|++ .||+||+|+|+||+++|++++|+++ ...|.++|.+++++|||.+++++..+++.|...
T Consensus 161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~-~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~ 223 (319)
T PRK06381 161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRL-YDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSE 223 (319)
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHH-HhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCc
Confidence 9998 7999999999999999999999998 577888899999999999999999999988755
No 41
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=8.8e-48 Score=354.36 Aligned_cols=231 Identities=23% Similarity=0.277 Sum_probs=198.9
Q ss_pred ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622 14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI 92 (269)
Q Consensus 14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~ 92 (269)
.+++++|+|||++++ |++.+|++||+|+|++|||||||||++.+++.++. +.+.++||++|+||||+|+|++|+.+|+
T Consensus 21 ~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~-~~g~~~vV~aSsGN~G~AlA~~aa~~G~ 99 (351)
T PRK06352 21 MISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAK-EEGAEAVICASTGNTSAAAAAYATRAGL 99 (351)
T ss_pred ccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHH-HCCCCEEEEECCcHHHHHHHHHHHHcCC
Confidence 488999999999998 88888899999999999999999999999999986 4556799999999999999999999999
Q ss_pred CeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHH
Q psy5622 93 PVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLE 171 (269)
Q Consensus 93 ~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~E 171 (269)
+|+||||++ .++.|+++|+.|||+|+.++++++++.+.+++++++.++++.++ .||++++||+++++|
T Consensus 100 ~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~n~~~~~G~~t~~~E 168 (351)
T PRK06352 100 KAYIVIPEGKVALGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLVNS-----------VNPYRLEGQKTAAFE 168 (351)
T ss_pred cEEEEEeCCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcccccC-----------CCccceeeHHHHHHH
Confidence 999999998 58999999999999999999999999999999998877655554 599999999999999
Q ss_pred HHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccC
Q psy5622 172 IVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAV 250 (269)
Q Consensus 172 I~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~ 250 (269)
|++|++ .||+||+|+|+||+++|++++||++ ...+ +.+.+++|+|||++++++. .|++.. ..+|+++++.+
T Consensus 169 I~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~-~~~~-~~~~~~vi~Vep~g~~~~~----~g~~~~--~~~~ia~~l~~ 240 (351)
T PRK06352 169 ICEQLGSAPDVLAIPVGNAGNISAYWKGFKEW-NEAK-ASGLPRMHGFEAEGAAAIV----QGKPID--NPETIATAIRI 240 (351)
T ss_pred HHHHcCCCCCEEEEECCchHHHHHHHHHHHHH-HhcC-CCCCCEEEEEeeCCCCHHH----hCCCcC--CCCcceeEEEe
Confidence 999998 7999999999999999999999998 2222 3455999999999998764 455543 34678888876
Q ss_pred CCCCHHHHHHHhhhhc
Q psy5622 251 PLVGWNAFETAAPLID 266 (269)
Q Consensus 251 ~~~~~~~~~~~~~~~~ 266 (269)
+.+.. |..+.+.+|
T Consensus 241 ~~~~~--~~~~~~~~d 254 (351)
T PRK06352 241 GNPAS--WGLAEAARD 254 (351)
T ss_pred CCCCc--HHHHHHHHH
Confidence 65433 455444444
No 42
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.3e-47 Score=357.33 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=178.9
Q ss_pred eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---C-ccEEEeCCChHHHHHHHHHHh
Q psy5622 15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---K-KGVISASLGNHAQAMCYHGSR 89 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~-~~vv~~SsGN~g~alA~~a~~ 89 (269)
+...+|+|||++++ +.+..+++||+|+|++|||||||||+|.++|.++.+++. . ++||++|+||+|+|+|++|+.
T Consensus 117 i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~ 196 (429)
T PLN03013 117 VSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAAS 196 (429)
T ss_pred HHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 45678999999998 888778899999999999999999999999999866553 2 469999999999999999999
Q ss_pred cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchh-ccc
Q psy5622 90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIM-AGQ 165 (269)
Q Consensus 90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~-~g~ 165 (269)
+|++|+||||+++++.|+++|+.|||+|+.++++ ++++.+.+++++++. +++|++| |+||.++ +||
T Consensus 197 ~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~q----------y~Np~n~~ah~ 266 (429)
T PLN03013 197 RGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQ----------FDNPANPKIHY 266 (429)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCC----------CCCHHHHHHHH
Confidence 9999999999999999999999999999999854 568888999998885 6788888 9999986 599
Q ss_pred hhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622 166 GTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF 226 (269)
Q Consensus 166 ~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~ 226 (269)
+++++||++|++ ++|+||+|+|+||+++|+++++|+. .|+++||+|||++++++
T Consensus 267 ~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~-------~P~vkVigVep~gs~~l 321 (429)
T PLN03013 267 ETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEK-------NPKTQVIGVEPTESDIL 321 (429)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhh-------CCCCEEEEEEeCCCchh
Confidence 999999999997 8999999999999999999999999 99999999999999887
No 43
>PLN02565 cysteine synthase
Probab=100.00 E-value=9.8e-48 Score=350.02 Aligned_cols=196 Identities=18% Similarity=0.178 Sum_probs=178.0
Q ss_pred ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC----CccEEEeCCChHHHHHHHHHH
Q psy5622 14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK----KKGVISASLGNHAQAMCYHGS 88 (269)
Q Consensus 14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~----~~~vv~~SsGN~g~alA~~a~ 88 (269)
.+...+++|||++++ +....+.+||+|+|++|||||||||+|.+++..+.+++. .++||++|+||||+|+|++|+
T Consensus 8 ~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~ 87 (322)
T PLN02565 8 DVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAA 87 (322)
T ss_pred hHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHH
Confidence 456678999999988 766566799999999999999999999999999875543 245999999999999999999
Q ss_pred hcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcch-hcc
Q psy5622 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDI-MAG 164 (269)
Q Consensus 89 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~-~~g 164 (269)
.+|++|+||||+++++.|+++|+.|||+|+.++. +++++.+.+++++++. ++++++| |+||.+ ..|
T Consensus 88 ~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q----------~~n~~n~~~~ 157 (322)
T PLN02565 88 AKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQ----------FENPANPKIH 157 (322)
T ss_pred HcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecc----------cCCHhHHHHH
Confidence 9999999999999999999999999999999985 4578889999998876 7888898 888865 578
Q ss_pred chhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622 165 QGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF 226 (269)
Q Consensus 165 ~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~ 226 (269)
|+|+++||++|++ .||+||+|+|+||+++|++++||++ +|.+|+|+|||++|+++
T Consensus 158 ~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~-------~p~~kvi~Vep~~s~~~ 213 (322)
T PLN02565 158 YETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQ-------NPDIKLYGVEPVESAVL 213 (322)
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHh-------CCCCEEEEEecCCCccc
Confidence 9999999999997 8999999999999999999999999 99999999999999887
No 44
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=2e-47 Score=356.27 Aligned_cols=239 Identities=22% Similarity=0.287 Sum_probs=207.9
Q ss_pred cCCcccccc-ccccCC-CeEEEEeCCCCC-CCchhhHHHHHHHHhchH-----------------h-c----CCccEEEe
Q psy5622 20 QWFNSKKSH-LSELTK-MEIFLKKDFFQV-TGSFKERGACYALLMLSE-----------------D-Q----KKKGVISA 74 (269)
Q Consensus 20 ~~TPl~~~~-l~~~~g-~~i~~K~E~~np-tGS~K~R~a~~~l~~~~~-----------------~-~----~~~~vv~~ 74 (269)
.+|||++++ |++.+| .+||+|+|++|+ |||||+|++.+.+.++.+ + . ...+||++
T Consensus 40 ~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~a 119 (396)
T TIGR03528 40 QPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTA 119 (396)
T ss_pred cCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEE
Confidence 499999998 999999 499999999885 999999999999987522 1 0 12379999
Q ss_pred CCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCcccc
Q psy5622 75 SLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVL 154 (269)
Q Consensus 75 SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
|+||||+|+|++|+++|++|+||||+++++.|+..|+.|||+|+.++++++++.+.+++++++.+++|+++ ..+.
T Consensus 120 SsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~~~~a~~~a~~~a~~~g~~~v~~-----~~~~ 194 (396)
T TIGR03528 120 TDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLNYDDAVRLAWKMAQENGWVMVQD-----TAWE 194 (396)
T ss_pred CccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcEeecc-----cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888888763 1112
Q ss_pred CCCC--cchhccchhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCC-cEEEEEcCCCChHH
Q psy5622 155 GYDH--PDIMAGQGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLE-IVDQGVESDRCASF 226 (269)
Q Consensus 155 g~~n--~~~~~g~~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~-~~vigVe~~~~~~~ 226 (269)
+|+| +..++||+|+++||++|++ .||+||+|+|+||+++|++.++++.+ .+. +++++|||++++++
T Consensus 195 ~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~------~~~~p~vi~Vep~~a~~l 268 (396)
T TIGR03528 195 GYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAY------GEERPITVIVEPDAADCL 268 (396)
T ss_pred ccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhc------CCCCCEEEEEccCCCchH
Confidence 3665 6678999999999999997 69999999999999999999997662 444 59999999999999
Q ss_pred HHHHHc--CCCCCCC-CcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622 227 STAIKH--GKPTPVS-VQPTLADGLAVPLVGWNAFETAAPLIDKMF 269 (269)
Q Consensus 227 ~~~~~~--g~~~~~~-~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~ 269 (269)
+.+++. |++...+ ..+|+++|+.++.|+..+|+.+++++|+++
T Consensus 269 ~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v 314 (396)
T TIGR03528 269 YRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFI 314 (396)
T ss_pred HHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEE
Confidence 999987 6665554 457999999999999999999999998864
No 45
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=7.7e-47 Score=348.31 Aligned_cols=236 Identities=22% Similarity=0.266 Sum_probs=201.0
Q ss_pred cceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcC
Q psy5622 13 LGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLN 91 (269)
Q Consensus 13 ~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G 91 (269)
+.+++.+|+|||++++ |++..|.+||+|+|++|||||||||++.+++.++. +.+.++||++|+||||+|+|++|+++|
T Consensus 20 ~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~-~~g~~~vV~aSsGN~G~alA~~aa~~G 98 (352)
T PRK06721 20 PDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAK-EEGSEAIICASTGNTSASAAAYAARLG 98 (352)
T ss_pred CccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHH-HCCCCEEEEECCcHHHHHHHHHHHHCC
Confidence 3478899999999998 88888899999999999999999999999999985 555789999999999999999999999
Q ss_pred CCeEEEEcCCC-cHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 92 IPVTVVMPIVA-PIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 92 ~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
++|+||||+.. ++.|+++|+.+||+|+.++++++++.+.+++++++.++++.++ .||.+++||.++++
T Consensus 99 ~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~n~~~~~G~~t~~~ 167 (352)
T PRK06721 99 MKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNS-----------VNPYRIEGQKTAAF 167 (352)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhCCceeccC-----------CCchhhhhhhhHHH
Confidence 99999999974 7889999999999999999999999999999999888776654 68999999999999
Q ss_pred HHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCccccccccc
Q psy5622 171 EIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLA 249 (269)
Q Consensus 171 EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~ 249 (269)
||++|++ .||+||+|+|+||+++|++.++.++.+..| .|.+++|+|||++++++. .|... ...+|+++++.
T Consensus 168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~--~~~~~vigVep~~~~~~~----~g~~~--~~~~tia~~l~ 239 (352)
T PRK06721 168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKG--YKKPRIHGFEAEGAAAIV----KGHVI--DEPETIATAIR 239 (352)
T ss_pred HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcC--CCCCeEEEEecCCCChHh----hCCcC--CCCCceeeccc
Confidence 9999997 799999999999999998777765533332 388999999999998865 34433 23568899988
Q ss_pred CCCCCHHH--HHHHhhhhccc
Q psy5622 250 VPLVGWNA--FETAAPLIDKM 268 (269)
Q Consensus 250 ~~~~~~~~--~~~~~~~~~~~ 268 (269)
++.+.... ++.+++++|++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~ 260 (352)
T PRK06721 240 IGNPASWSYAVEAAEQSHGEI 260 (352)
T ss_pred cCCCCCHHHHHHHHHhcCCEE
Confidence 77665432 44456666654
No 46
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=7.6e-47 Score=348.63 Aligned_cols=223 Identities=24% Similarity=0.307 Sum_probs=195.8
Q ss_pred ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622 14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI 92 (269)
Q Consensus 14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~ 92 (269)
.+++++|+|||++++ |++.+|.+||+|+|++|||||||||++.+++.++. +.+..+||++|+||||+++|++|+.+|+
T Consensus 24 ~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~-~~g~~~iv~aSsGN~g~alA~~a~~~G~ 102 (353)
T PRK07409 24 VVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAK-EEGAKAVICASTGNTSASAAAYAARAGL 102 (353)
T ss_pred cccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHH-HCCCCEEEEECCcHHHHHHHHHHHHcCC
Confidence 478999999999998 88888899999999999999999999999999986 4456799999999999999999999999
Q ss_pred CeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHH
Q psy5622 93 PVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLE 171 (269)
Q Consensus 93 ~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~E 171 (269)
+|+||||++ .++.|+++++.|||+|+.++++++++.+.+++++++.+++++++ .||.+++||.|+++|
T Consensus 103 ~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l~~~~~~~~~~~-----------~n~~~~~g~~t~~~E 171 (353)
T PRK07409 103 KAFVLIPEGKIALGKLAQAVMYGAEIIQIDGNFDDALEIVRELAEKYPVTLVNS-----------VNPYRIEGQKTAAFE 171 (353)
T ss_pred CEEEEEcCCCCchhhHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCceecCC-----------CCchhhhhHHHHHHH
Confidence 999999998 68899999999999999999999999999999998888666655 599999999999999
Q ss_pred HHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccC
Q psy5622 172 IVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAV 250 (269)
Q Consensus 172 I~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~ 250 (269)
|++|++ .||+||+|+|+||+++|++.+|+++ ...|...+.+|+|+|||.+++++. .|++.. ...|+++++.+
T Consensus 172 I~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~-~~~~~~~~~~kvigVep~g~~~~~----~g~~~~--~~~ti~~~l~~ 244 (353)
T PRK07409 172 IVDALGDAPDYHCIPVGNAGNITAYWKGYKEY-HQDGKSTKLPRMMGFQAAGAAPIV----RGEPVK--NPETIATAIRI 244 (353)
T ss_pred HHHHhCCCCCEEEEeCCChHHHHHHHHHHHHH-HHcCCccCCCeEEEEecCCCChHh----hCCcCC--CCcceeeeeec
Confidence 999997 7999999999999999999999987 334444556999999999998875 355443 24688888876
Q ss_pred CCCCH
Q psy5622 251 PLVGW 255 (269)
Q Consensus 251 ~~~~~ 255 (269)
+.+..
T Consensus 245 ~~~~~ 249 (353)
T PRK07409 245 GNPAS 249 (353)
T ss_pred CCCCC
Confidence 65554
No 47
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=6.4e-47 Score=352.53 Aligned_cols=234 Identities=22% Similarity=0.201 Sum_probs=190.1
Q ss_pred eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhc
Q psy5622 15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRL 90 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~ 90 (269)
+...+|+|||++++ |+...|.+||+|+|++|||||||||+|.+++.++.+++. ..+|+++||||||+|+|++|+.+
T Consensus 47 ~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~ 126 (423)
T PLN02356 47 LIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAY 126 (423)
T ss_pred HHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 33456999999998 988889999999999999999999999999999865442 34677799999999999999999
Q ss_pred CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC-------CHH-HHH---HHHHHHHhh----------------------
Q psy5622 91 NIPVTVVMPIVAPIMKIQACRRYGATVIVEGA-------DMK-EAK---NIALKKGAE---------------------- 137 (269)
Q Consensus 91 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~-------~~~-~~~---~~a~~~~~~---------------------- 137 (269)
|++|+||||+++++.|+++|+.|||+|+.+++ ++. .+. ..+.+++++
T Consensus 127 G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~ 206 (423)
T PLN02356 127 GCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEE 206 (423)
T ss_pred CCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 99999999999999999999999999998853 221 111 223444433
Q ss_pred -----------hCCeeecCCCCCCccccCCCCcch-hccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHh
Q psy5622 138 -----------LGLTYINGYLSSGLSVLGYDHPDI-MAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMA 204 (269)
Q Consensus 138 -----------~~~~~~~~~~~~~~~~~g~~n~~~-~~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~ 204 (269)
.+.+|++| |+|+.+ ..++..+|+||++|++ .+|+||+|+||||+++|++++||++
T Consensus 207 ~~~~~~~~~~~~~~~~~~q----------~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~-- 274 (423)
T PLN02356 207 EKENSLFSSSCTGGFFADQ----------FENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEK-- 274 (423)
T ss_pred cccccccccCCCCcEecCc----------cCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHh--
Confidence 35567777 889885 3444456999999997 8999999999999999999999999
Q ss_pred cCCCCCCCcEEEEEcCCCCh---------HHHHHHHcCCCCCCCCcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622 205 GQGTVGLEIVDQGVESDRCA---------SFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKMF 269 (269)
Q Consensus 205 ~~g~~~~~~~vigVe~~~~~---------~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~ 269 (269)
+|.++|++|||.++. .++.+++.|++...+. +|+++|++++.+.. ...++++|+++
T Consensus 275 -----~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~-~tia~Gig~~~~~~---~~~~~~vD~~v 339 (423)
T PLN02356 275 -----NPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPF-DTITEGIGINRLTQ---NFLMAKLDGAF 339 (423)
T ss_pred -----CCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCC-CeecCcCcCCCCCh---hHhHHhCCcEE
Confidence 999999999999987 4566777887654433 79999998775443 34566777753
No 48
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=3.3e-47 Score=348.12 Aligned_cols=221 Identities=21% Similarity=0.222 Sum_probs=186.5
Q ss_pred ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHh
Q psy5622 14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSR 89 (269)
Q Consensus 14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~ 89 (269)
.+...+++|||++++ |++.+|++||+|+|++|||||||||++.+++.++.+.+. .++|+++|+||||+|+|++|++
T Consensus 6 ~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~ 85 (330)
T PRK10717 6 DVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAA 85 (330)
T ss_pred hHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 355678999999998 998889999999999999999999999999999865543 2679999999999999999999
Q ss_pred cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC-HHH---HHHH----HHHHHhh--hCCeeecCCCCCCccccCCCCc
Q psy5622 90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD-MKE---AKNI----ALKKGAE--LGLTYINGYLSSGLSVLGYDHP 159 (269)
Q Consensus 90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~---~~~~----a~~~~~~--~~~~~~~~~~~~~~~~~g~~n~ 159 (269)
+|++|+||||+.+++.|+++++.|||+|+.++++ +++ ..+. ++++.++ .+++|+++ |+||
T Consensus 86 ~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~----------~~~~ 155 (330)
T PRK10717 86 RGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQ----------FDNP 155 (330)
T ss_pred cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCC----------CCCh
Confidence 9999999999999999999999999999999864 332 2333 3344333 36778888 8999
Q ss_pred ch-hccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCC
Q psy5622 160 DI-MAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTP 237 (269)
Q Consensus 160 ~~-~~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~ 237 (269)
.+ ..||.++++||++|++ .+|+||+|+|+||+++|++++|+++ .|+++|++|||+++ ++..+++.|+...
T Consensus 156 ~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~-------~~~~~vi~Vep~~~-~~~~~~~~g~~~~ 227 (330)
T PRK10717 156 ANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKET-------NPKVKIVLADPTGS-ALYSYYKTGELKA 227 (330)
T ss_pred hhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHh-------CCCCEEEEEcCCCC-ccccccccCCcCC
Confidence 85 5789999999999997 7999999999999999999999999 89999999999999 4666776666442
Q ss_pred CCCcccccccccCCCCC
Q psy5622 238 VSVQPTLADGLAVPLVG 254 (269)
Q Consensus 238 ~~~~~t~a~gl~~~~~~ 254 (269)
..+++++|++++.+.
T Consensus 228 --~~~~~~~gl~~~~~~ 242 (330)
T PRK10717 228 --EGSSITEGIGQGRIT 242 (330)
T ss_pred --CCCcccCcCCCCcCC
Confidence 345778888766543
No 49
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=2.3e-46 Score=336.92 Aligned_cols=190 Identities=27% Similarity=0.290 Sum_probs=177.7
Q ss_pred cCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622 20 QWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNIPVT 95 (269)
Q Consensus 20 ~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~~~~ 95 (269)
|+|||++++ |++..|.+||+|+|++|||||||+|++.+++.++.+++. .++|+++|+||||+|+|++|+++|++|+
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 80 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI 80 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEE
Confidence 689999998 888889999999999999999999999999999865543 2679999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHcCCEEEEeCCCH----HHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchhccch-hHH
Q psy5622 96 VVMPIVAPIMKIQACRRYGATVIVEGADM----KEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIMAGQG-TVG 169 (269)
Q Consensus 96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~----~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~~g~~-t~~ 169 (269)
||||+++++.|+++++.+||+|+.+++++ +++.+.+++++++. +++|+++ |+||.+++|+. +++
T Consensus 81 i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~p~~~~g~~~t~~ 150 (291)
T cd01561 81 IVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQ----------FENPANPEAHYETTA 150 (291)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecC----------CCCchHHHHHHHHHH
Confidence 99999999999999999999999998766 88889999998887 7899998 89999989887 999
Q ss_pred HHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622 170 LEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF 226 (269)
Q Consensus 170 ~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~ 226 (269)
+||++|++ .||+||+|+|+||+++|++.+|+++ .|.+++|+|||++++++
T Consensus 151 ~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~-------~~~~~vi~Ve~~~~~~~ 201 (291)
T cd01561 151 PEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEK-------NPNVRIVGVDPVGSVLF 201 (291)
T ss_pred HHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHh-------CCCCEEEEEecCCCccc
Confidence 99999998 7999999999999999999999999 89999999999999887
No 50
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-47 Score=334.92 Aligned_cols=234 Identities=26% Similarity=0.263 Sum_probs=197.1
Q ss_pred eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc---CCccEEEeCCChHHHHHHHHHHhc
Q psy5622 15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ---KKKGVISASLGNHAQAMCYHGSRL 90 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~---~~~~vv~~SsGN~g~alA~~a~~~ 90 (269)
+....|+|||++++ +....+++||+|+|++||+||.|||.|.+++.++.+++ ...+||++||||+|++||++|+.+
T Consensus 5 ~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~ 84 (300)
T COG0031 5 ILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAK 84 (300)
T ss_pred hHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHc
Confidence 34566999999998 88877899999999999999999999999999987655 267899999999999999999999
Q ss_pred CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--C-HHHHHHHHHHHHhhhCC-ee-ecCCCCCCccccCCCCcch-hcc
Q psy5622 91 NIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--D-MKEAKNIALKKGAELGL-TY-INGYLSSGLSVLGYDHPDI-MAG 164 (269)
Q Consensus 91 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~-~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~g~~n~~~-~~g 164 (269)
|+++++|||+.++.+|+++|+.|||+|+.++. . +..+.+++++++++.+. ++ .+| |+||.+ .+|
T Consensus 85 Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Q----------f~NpaN~~aH 154 (300)
T COG0031 85 GYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQ----------FENPANPEAH 154 (300)
T ss_pred CCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhh----------cCCCccHHHH
Confidence 99999999999999999999999999999974 4 77888999999888843 43 456 899986 477
Q ss_pred chhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHH----HHcC--C-CC
Q psy5622 165 QGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTA----IKHG--K-PT 236 (269)
Q Consensus 165 ~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~----~~~g--~-~~ 236 (269)
+.+++.||++|++ .+|++|+++|||||++|++++||+. .|.+++++|||++|+.+... .-+| . .+
T Consensus 155 ~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~-------~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~i 227 (300)
T COG0031 155 YETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKER-------NPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFV 227 (300)
T ss_pred HhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhh-------CCCcEEEEECCCCCcccCCCCCCcccCCCCCCcC
Confidence 7899999999998 6999999999999999999999999 99999999999999877420 0011 0 11
Q ss_pred CCCCcccccccccCCCCCHHHHHHHhhhhc
Q psy5622 237 PVSVQPTLADGLAVPLVGWNAFETAAPLID 266 (269)
Q Consensus 237 ~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~ 266 (269)
|......+.|.+ +..++..+|+.+|++++
T Consensus 228 p~~~~~~~iD~v-~~V~d~~A~~~~r~La~ 256 (300)
T COG0031 228 PENLDLDLIDEV-IRVSDEEAIATARRLAR 256 (300)
T ss_pred CcccccccCceE-EEECHHHHHHHHHHHHH
Confidence 222244556665 45667888999998874
No 51
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=3e-46 Score=341.45 Aligned_cols=240 Identities=20% Similarity=0.249 Sum_probs=205.6
Q ss_pred eeccccCCcccccc-ccccCCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622 15 FVIRDQWFNSKKSH-LSELTKM-EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI 92 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~ 92 (269)
+.+++++|||++++ |.+.+|. +||+|+|++|||||||||++.+++.++. +.+..+|+++|+||||+|+|++|+.+|+
T Consensus 17 ~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~-~~g~~~vv~aSsGN~g~a~A~~a~~~g~ 95 (328)
T TIGR00260 17 VDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKAL-ELGNDTVLCASTGNTGAAAAAYAGKAGV 95 (328)
T ss_pred hhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHH-HcCCCEEEEeCCcHHHHHHHHHhccCCC
Confidence 67788999999998 8888887 9999999999999999999999999885 4556799999999999999999999999
Q ss_pred CeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCC--cchhccchhHH
Q psy5622 93 PVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDH--PDIMAGQGTVG 169 (269)
Q Consensus 93 ~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n--~~~~~g~~t~~ 169 (269)
+|+|+||++ +++.|+..++.+||+|+.++++++++.+.+++++++.++++.++ .| |.+++||.+++
T Consensus 96 ~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~n~~~~~~~g~~t~~ 164 (328)
T TIGR00260 96 KVVILYPAGKISLGKLAQALGYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNS-----------VNSIPYRLEGQKTYA 164 (328)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCcEEEEecCCHHHHHHHHHHHHhhcCeeeccc-----------CCCCCeEeeeehhHH
Confidence 999999998 89999999999999999999999999999999988766555554 34 88999999999
Q ss_pred HHHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHH-cCCCCCCCCcccccc
Q psy5622 170 LEIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIK-HGKPTPVSVQPTLAD 246 (269)
Q Consensus 170 ~EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~-~g~~~~~~~~~t~a~ 246 (269)
+||++|++ .+|+||+|+|+||+++|++.+|++. ...|+ ...+++++|||++++++..++. .|+..+....+|+++
T Consensus 165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~-~~~g~-~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~ 242 (328)
T TIGR00260 165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEK-KEGGL-DSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLST 242 (328)
T ss_pred HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHH-HhcCC-ccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCc
Confidence 99999997 7999999999999999999999986 22333 2245999999999988877774 455554444579999
Q ss_pred cccCCCCC--HHHHHHHhhhhccc
Q psy5622 247 GLAVPLVG--WNAFETAAPLIDKM 268 (269)
Q Consensus 247 gl~~~~~~--~~~~~~~~~~~~~~ 268 (269)
+++++.|. ...++.+++++|++
T Consensus 243 ~l~~~~p~~~~~~~~~~~~~~~~~ 266 (328)
T TIGR00260 243 AIDIGNPANWERALELFRRSNGNA 266 (328)
T ss_pred ceecCCCCCHHHHHHHHHhcCCcE
Confidence 98777653 35677777777765
No 52
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.8e-46 Score=337.11 Aligned_cols=230 Identities=22% Similarity=0.230 Sum_probs=192.4
Q ss_pred ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCC
Q psy5622 17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNI 92 (269)
Q Consensus 17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~ 92 (269)
...++|||++++ |.+..|.+||+|+|++|||||||||++.+++.++.+++. .++|+++|+||||+|+|++|+.+|+
T Consensus 8 ~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~ 87 (296)
T PRK11761 8 DTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIAAIKGY 87 (296)
T ss_pred HhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCC
Confidence 346899999998 888888999999999999999999999999999865543 2679999999999999999999999
Q ss_pred CeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcch-hccchhHH
Q psy5622 93 PVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDI-MAGQGTVG 169 (269)
Q Consensus 93 ~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~-~~g~~t~~ 169 (269)
+|+||||+.+++.|+++|+.|||+|+.++. +++++.+.+++++++.+++|++| |+|+.+ ..||++++
T Consensus 88 ~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~----------~~n~~~~~~~~~t~~ 157 (296)
T PRK11761 88 RMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEGEGKVLDQ----------FANPDNPLAHYETTG 157 (296)
T ss_pred CEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhccCCEecCC----------CCChhhHHHHhhchH
Confidence 999999999999999999999999999985 78899899999999989999998 888875 45789999
Q ss_pred HHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCC-C-CC-ccccc
Q psy5622 170 LEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTP-V-SV-QPTLA 245 (269)
Q Consensus 170 ~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~-~-~~-~~t~a 245 (269)
+||++|++ .+|+||+|+|+||+++|++++||++ .|.+|+++|||++++++.. +. +.+.. . +. .....
T Consensus 158 ~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~-------~~~~kvigVep~~~~~i~g-~~-~~~~~~~~~~~~~~~v 228 (296)
T PRK11761 158 PEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQ-------NPAVQIVGLQPEEGSSIPG-IR-RWPEEYLPKIFDASRV 228 (296)
T ss_pred HHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHh-------CCCCEEEEEecCCCCcCcC-CC-CCCCCcCCcccChhhC
Confidence 99999997 7999999999999999999999999 8999999999999877631 11 11010 0 00 11222
Q ss_pred ccccCCCCCHHHHHHHhhhhc
Q psy5622 246 DGLAVPLVGWNAFETAAPLID 266 (269)
Q Consensus 246 ~gl~~~~~~~~~~~~~~~~~~ 266 (269)
|.+ +..++.++++.++++.+
T Consensus 229 d~~-v~V~d~e~~~a~~~l~~ 248 (296)
T PRK11761 229 DRV-LDVSQQEAENTMRRLAR 248 (296)
T ss_pred CEE-EEECHHHHHHHHHHHHH
Confidence 333 34456777777777664
No 53
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=4.6e-46 Score=336.26 Aligned_cols=194 Identities=24% Similarity=0.238 Sum_probs=178.4
Q ss_pred ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622 19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNIPV 94 (269)
Q Consensus 19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~~~ 94 (269)
.++|||++++ |++..|.+||+|+|++|||||||+|++.+++..+.+.+. .++|+++|+||||+|+|++|+++|++|
T Consensus 5 vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~ 84 (299)
T TIGR01136 5 IGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKL 84 (299)
T ss_pred cCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcE
Confidence 5799999998 998888999999999999999999999999999865543 256999999999999999999999999
Q ss_pred EEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcch-hccchhHHH
Q psy5622 95 TVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDI-MAGQGTVGL 170 (269)
Q Consensus 95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~-~~g~~t~~~ 170 (269)
+||||+++++.|+++|+.+||+|+.++++ ++++.+.+++++++. +++++++ |+|+.+ +.||+++++
T Consensus 85 ~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~g~~t~~~ 154 (299)
T TIGR01136 85 ILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQ----------FENPANPEAHYKTTGP 154 (299)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCC----------CCCchhHHHHHHHHHH
Confidence 99999999999999999999999999865 688999999999886 5677888 888875 789999999
Q ss_pred HHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHH
Q psy5622 171 EIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTA 229 (269)
Q Consensus 171 EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~ 229 (269)
||++|++ .||+||+|+|+||+++|++.+|+++ +|.+|+++|||++++++..+
T Consensus 155 Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~-------~~~~~vi~Ve~~~~~~~~~~ 207 (299)
T TIGR01136 155 EIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQ-------NPNIKIVAVEPAESPVLSGG 207 (299)
T ss_pred HHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHh-------CCCCEEEEEecCCCccccCC
Confidence 9999997 7999999999999999999999999 89999999999999988643
No 54
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=9.6e-46 Score=344.98 Aligned_cols=242 Identities=18% Similarity=0.143 Sum_probs=205.7
Q ss_pred eccccCCcccccc-ccccCCC-eEEEEe-------CCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHH
Q psy5622 16 VIRDQWFNSKKSH-LSELTKM-EIFLKK-------DFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86 (269)
Q Consensus 16 ~~~~~~TPl~~~~-l~~~~g~-~i~~K~-------E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~ 86 (269)
++.+|.|||++++ |++.+|+ +||+|+ |++|||||||||++.+++.++.+. +.+.|+++|+||||+|+|++
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~-g~~~Vv~aSsGN~g~alA~~ 135 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKER-GGKTLVVASAGNTGRAFAEV 135 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH
Confidence 5678889999998 9999999 999955 558999999999999999998644 47889999999999999999
Q ss_pred HHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccch
Q psy5622 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQG 166 (269)
Q Consensus 87 a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~ 166 (269)
|+++|++|+||||++++..+...++.+||+|+.++++++++.+.+++++++.+++..++ ++||+.++|++
T Consensus 136 aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g~~d~a~~~a~~~a~~~g~~~~~~----------~~~p~~ieG~~ 205 (398)
T TIGR03844 136 SAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDGDYTDAIALADRIATLPGFVPEGG----------ARNVARRDGMG 205 (398)
T ss_pred HHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHhCCccccCC----------CCCHHHHhhHH
Confidence 99999999999999865444444578999999999999999999999998877644455 67999999999
Q ss_pred hHHHHHHhhcCC-CCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCCC---c
Q psy5622 167 TVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVSV---Q 241 (269)
Q Consensus 167 t~~~EI~~ql~~-~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~~---~ 241 (269)
|+++||++|+++ ||+||+|+|+|.++.|++++++++ ...|.+. ..+++++|||++|++++++|+.|.....+. .
T Consensus 206 Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l-~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~ 284 (398)
T TIGR03844 206 TVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRL-IEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMP 284 (398)
T ss_pred HHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHH-HHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCc
Confidence 999999999984 999999999999999999999998 5566663 567899999999999999999997653221 1
Q ss_pred -------ccccccccCCCCCH----HHHHHHhhhhcccC
Q psy5622 242 -------PTLADGLAVPLVGW----NAFETAAPLIDKMF 269 (269)
Q Consensus 242 -------~t~a~gl~~~~~~~----~~~~~~~~~~~~~~ 269 (269)
+|++++|.+++|.. .+++.+++..++++
T Consensus 285 ~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v 323 (398)
T TIGR03844 285 DAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMY 323 (398)
T ss_pred cccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEE
Confidence 58999998777632 45888888877653
No 55
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=2.2e-45 Score=330.38 Aligned_cols=192 Identities=21% Similarity=0.234 Sum_probs=176.5
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCCC
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNIP 93 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~~ 93 (269)
..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.+++. .++|+++|+||||+|+|++|+++|++
T Consensus 5 ~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~ 84 (290)
T TIGR01138 5 TVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYR 84 (290)
T ss_pred hCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCe
Confidence 46899999998 888888999999999999999999999999999875544 26799999999999999999999999
Q ss_pred eEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhc-cchhHHH
Q psy5622 94 VTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMA-GQGTVGL 170 (269)
Q Consensus 94 ~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~-g~~t~~~ 170 (269)
|+||||+++++.|+++|+.|||+|+.+++ +++++.+.+++++++.+.+|++| |+|+.++. ||+++++
T Consensus 85 ~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~~~~~~~----------~~~~~~~~~~~~t~~~ 154 (290)
T TIGR01138 85 MKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGEGKLLDQ----------FNNPDNPYAHYTSTGP 154 (290)
T ss_pred EEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCCCCCc----------cCCcccHHHHhHhHHH
Confidence 99999999999999999999999999985 47888899999999988788888 88887654 5799999
Q ss_pred HHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622 171 EIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF 226 (269)
Q Consensus 171 EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~ 226 (269)
||++|++ .+|+||+|+|+||+++|++.+||++ .|.+|+|+|||.+++++
T Consensus 155 Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~-------~~~~kvi~Vep~~~~~~ 204 (290)
T TIGR01138 155 EIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQ-------NPPVQIVGLQPEEGSSI 204 (290)
T ss_pred HHHHHcCCCCCEEEECCCchHHHHHHHHHHHHh-------CCCCEEEEEeCCCCCCc
Confidence 9999997 7999999999999999999999999 89999999999998775
No 56
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1e-45 Score=341.81 Aligned_cols=196 Identities=18% Similarity=0.210 Sum_probs=176.8
Q ss_pred ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc----CCccEEEeCCChHHHHHHHHHH
Q psy5622 14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ----KKKGVISASLGNHAQAMCYHGS 88 (269)
Q Consensus 14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~----~~~~vv~~SsGN~g~alA~~a~ 88 (269)
.+.+.+|+|||++++ +....|++||+|+|++|||||||||++.++|.++.+.+ +.++||++|+||||+|+|++|+
T Consensus 52 ~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~ 131 (368)
T PLN02556 52 DASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAA 131 (368)
T ss_pred hHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHH
Confidence 356688999999998 88778899999999999999999999999999986554 2468999999999999999999
Q ss_pred hcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchh-cc
Q psy5622 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIM-AG 164 (269)
Q Consensus 89 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~-~g 164 (269)
.+|++|+||||+.++..|+.+|+.|||+|+.++. +....++.+++++++. +++|++| |+||.++ .|
T Consensus 132 ~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q----------~~np~~~~~g 201 (368)
T PLN02556 132 MKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQ----------FSNPANTQVH 201 (368)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCC----------CCCHHHHHHH
Confidence 9999999999999999999999999999999974 3346677788888776 5777888 8999987 59
Q ss_pred chhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622 165 QGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF 226 (269)
Q Consensus 165 ~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~ 226 (269)
|.++++||++|+. .+|+||+|+||||+++|+++++|++ +|.+||++|||++++++
T Consensus 202 ~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~-------~p~~kVigVep~~~~~~ 257 (368)
T PLN02556 202 FETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSK-------NPNVKIYGVEPAESNVL 257 (368)
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHh-------CCCCEEEEEeeCCCccc
Confidence 9999999999985 7999999999999999999999999 89999999999999765
No 57
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.9e-45 Score=335.49 Aligned_cols=196 Identities=21% Similarity=0.166 Sum_probs=174.3
Q ss_pred eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC----CccEEEeCCChHHHHHHHHHHh
Q psy5622 15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK----KKGVISASLGNHAQAMCYHGSR 89 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~----~~~vv~~SsGN~g~alA~~a~~ 89 (269)
+...+++|||++++ +....|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|+|++|+.
T Consensus 11 ~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~ 90 (323)
T PLN00011 11 VTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAA 90 (323)
T ss_pred HHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHH
Confidence 34457999999998 776667899999999999999999999999999876553 5789999999999999999999
Q ss_pred cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCH--HHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcch-hccc
Q psy5622 90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADM--KEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDI-MAGQ 165 (269)
Q Consensus 90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~--~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~-~~g~ 165 (269)
+|++|+||||+++++.|+++++.|||+|+.++.++ ++..+.+++++++. +++|+++ |+|+.+ ..||
T Consensus 91 ~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~----------~~n~~n~~~~~ 160 (323)
T PLN00011 91 RGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQ----------FENPANPEIHY 160 (323)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEecc----------ccCCccHHHHH
Confidence 99999999999999999999999999999998643 45567788888875 4777888 887764 3589
Q ss_pred hhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622 166 GTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS 227 (269)
Q Consensus 166 ~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~ 227 (269)
.++++||++|+. .||+||+|+|+||+++|+++++|++ .|.+++|+|||++++++.
T Consensus 161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~-------~~~~kvigVe~~~~~~~~ 216 (323)
T PLN00011 161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEK-------NKDIKVCVVEPVESAVLS 216 (323)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhh-------CCCCEEEEEecCCCcccC
Confidence 999999999986 8999999999999999999999999 899999999999998873
No 58
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.2e-45 Score=333.27 Aligned_cols=193 Identities=21% Similarity=0.208 Sum_probs=173.7
Q ss_pred cccCCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622 18 RDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNIPV 94 (269)
Q Consensus 18 ~~~~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~~~ 94 (269)
.+++|||++++-....|.+||+|+|++|||||||||++.+++.++.+++. ..+|+++|+||||+|+|++|+++|++|
T Consensus 4 ~~g~TPl~~~~~~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~ 83 (298)
T TIGR01139 4 LIGNTPLVRLNRIEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKL 83 (298)
T ss_pred ccCCCceEEccccCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeE
Confidence 46899999987333567899999999999999999999999998865543 266999999999999999999999999
Q ss_pred EEEEcCCCcHHHHHHHHHcCCEEEEeCCCH--HHHHHHHHHHHhhhC--CeeecCCCCCCccccCCCCcc-hhccchhHH
Q psy5622 95 TVVMPIVAPIMKIQACRRYGATVIVEGADM--KEAKNIALKKGAELG--LTYINGYLSSGLSVLGYDHPD-IMAGQGTVG 169 (269)
Q Consensus 95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~--~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~g~~n~~-~~~g~~t~~ 169 (269)
+||||+++++.|+++|+.+||+|+.+++++ +++.+.+++++++.+ ++++++ |+||. .+.||++++
T Consensus 84 ~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~n~~~~~~g~~t~~ 153 (298)
T TIGR01139 84 ILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQ----------FENPANPEIHRKTTG 153 (298)
T ss_pred EEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccc----------cCCcccHHHHHHHHH
Confidence 999999999999999999999999999764 578888999998876 456777 88988 478999999
Q ss_pred HHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622 170 LEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS 227 (269)
Q Consensus 170 ~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~ 227 (269)
+||++|++ .||+||+|+|+||+++|++.+|+++ .+.+|+|+|||.++++++
T Consensus 154 ~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~-------~~~~~vi~Ve~~~~~~~~ 205 (298)
T TIGR01139 154 PEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQ-------KPNIKIVAVEPAESPVLS 205 (298)
T ss_pred HHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhc-------CCCCEEEEEecCCCcccC
Confidence 99999997 7999999999999999999999999 889999999999998775
No 59
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=4.7e-43 Score=333.16 Aligned_cols=190 Identities=20% Similarity=0.266 Sum_probs=169.5
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCCC
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNIP 93 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~~ 93 (269)
..++|||++++ |++.+|.+||+|+|++|||||||+|+|.+++.++.+++. .++|+++|+||||+|+|++|+++|++
T Consensus 8 ~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~ 87 (454)
T TIGR01137 8 LIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYK 87 (454)
T ss_pred hcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCe
Confidence 35799999998 888888899999999999999999999999999875543 26799999999999999999999999
Q ss_pred eEEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHH---HHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcch-hccch
Q psy5622 94 VTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKE---AKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDI-MAGQG 166 (269)
Q Consensus 94 ~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~---~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~-~~g~~ 166 (269)
|++|||+++++.|+++++.|||+|+.++++ +++ ..+.+.+++++. +.+|+++ |+|+.+ ..||.
T Consensus 88 ~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~----------~~~~~~~~~~~~ 157 (454)
T TIGR01137 88 CIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQ----------YNNPSNPLAHYD 157 (454)
T ss_pred EEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEeccc----------CCChhhHHHHHH
Confidence 999999999999999999999999999853 332 355677777763 5667788 888885 47999
Q ss_pred hHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh
Q psy5622 167 TVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA 224 (269)
Q Consensus 167 t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~ 224 (269)
++++||++|++ .||+||+|+|+||+++|++.++|+. .|.++|++|||.+++
T Consensus 158 t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~-------~~~~~vi~ve~~~~~ 209 (454)
T TIGR01137 158 GTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKES-------NPKCRIVGADPEGSI 209 (454)
T ss_pred hhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhh-------CCCCEEEEEecCCCc
Confidence 99999999997 7999999999999999999999998 899999999999986
No 60
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=2.4e-43 Score=318.12 Aligned_cols=235 Identities=33% Similarity=0.486 Sum_probs=197.5
Q ss_pred eeccccCCccccc--c-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcC
Q psy5622 15 FVIRDQWFNSKKS--H-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLN 91 (269)
Q Consensus 15 ~~~~~~~TPl~~~--~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G 91 (269)
++.++++|||+++ + +.+..+.+||+|+|++|||||||||++.+++.++. +.+.++|+++|+||||.|+|++|+.+|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~-~~~~~~vv~assGN~g~a~A~~a~~~g 79 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAK-EKGGRTVVGASSGNHGRALAYAAARLG 79 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHH-HTTTSEEEEESSSHHHHHHHHHHHHHT
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcc-ccccceeeeeccCCceehhhhhhhhcc
Confidence 3567899999995 3 55666789999999999999999999999999975 456788999999999999999999999
Q ss_pred CCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCee-------ecCCCCCCccccCCCCcchhcc
Q psy5622 92 IPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTY-------INGYLSSGLSVLGYDHPDIMAG 164 (269)
Q Consensus 92 ~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~g~~n~~~~~g 164 (269)
++|++|+|+++++.|+++++.+||+|+.++.+++++.+.+.+++++. ..+ +++ ++|+..+.|
T Consensus 80 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~g 148 (306)
T PF00291_consen 80 LKCTIVVPEDVSPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKER-AELLSPFNGELNQ----------YNNPNVIAG 148 (306)
T ss_dssp CEEEEEEETTSHHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHH-HHHHHHSTTEEST----------TTSHHHHHH
T ss_pred ccceeeeccccccccccceeeecceEEEccccccccccccccccccc-cccccccccccCc----------ccchhhhhh
Confidence 99999999999999999999999999999987776666666665543 111 444 677889999
Q ss_pred chhHHHHHHhhcCCCC--EEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcc
Q psy5622 165 QGTVGLEIVDQVANID--AIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP 242 (269)
Q Consensus 165 ~~t~~~EI~~ql~~~d--~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~ 242 (269)
+.++++||++|++.|| +||+|+|+||+++|++.+++.+ . .|.+++++|||.++++++++++.|.+...+...
T Consensus 149 ~~~~~~Ei~~q~~~~d~d~vvv~~GtGg~~~Gi~~~~~~~-----~-~~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~ 222 (306)
T PF00291_consen 149 YATIGLEIYEQLGKPDPDYVVVPVGTGGTAAGIAAGLKEL-----I-LPPVRVIGVEPEGSDPLYRSFKAGKPIRLPGES 222 (306)
T ss_dssp HHHHHHHHHHHHTTESESEEEEEESSSHHHHHHHHHHHHH-----C-HTTSEEEEEEETTGHHHHHHHHHTSCEHSSCHH
T ss_pred hhhcchhcccccccccceEEEecCCchhHHHHHHhhhhhh-----h-cccccceeeeccCCcccccccccccccccccee
Confidence 9999999999997555 4999999999999999999984 1 178999999999999999999999876543334
Q ss_pred cccccccCCC--CCHHHHHHHhhhhccc
Q psy5622 243 TLADGLAVPL--VGWNAFETAAPLIDKM 268 (269)
Q Consensus 243 t~a~gl~~~~--~~~~~~~~~~~~~~~~ 268 (269)
+++ ||+.+. ++...|+.++++++++
T Consensus 223 ~~~-gl~~~~~~~~~~~~~~~~~~~~~~ 249 (306)
T PF00291_consen 223 TIA-GLGVPMPFPGELDLELIDEYVGDV 249 (306)
T ss_dssp SST-GGTSSSCTTTTHHHHHHHHETEEE
T ss_pred eee-cccCCccchhhhhhhhhhhccccc
Confidence 555 888777 7777888998887654
No 61
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.4e-42 Score=304.53 Aligned_cols=182 Identities=39% Similarity=0.583 Sum_probs=173.0
Q ss_pred Ccccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC--CccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622 22 FNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK--KKGVISASLGNHAQAMCYHGSRLNIPVTVVM 98 (269)
Q Consensus 22 TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~--~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv 98 (269)
|||++++ |++..+.+||+|+|++|||||||||++.+++..+.+.++ ..+|+++|+||+|.|+|++|+.+|++|++|+
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~ 80 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIVM 80 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 8999998 888778899999999999999999999999999865553 6889999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhh-hCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC
Q psy5622 99 PIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAE-LGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA 177 (269)
Q Consensus 99 p~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~ 177 (269)
|++.++.|+++|+.+||+|+.++++++++.+.+++++++ .+++|+++ |+|+.+++|+.++++||.+|++
T Consensus 81 p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~n~~~~~g~~~~~~Ei~~q~~ 150 (244)
T cd00640 81 PEGASPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQ----------FDNPANIAGQGTIGLEILEQLG 150 (244)
T ss_pred CCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCC----------CCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999998 78899998 8999999999999999999998
Q ss_pred C--CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcC
Q psy5622 178 N--IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVES 220 (269)
Q Consensus 178 ~--~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~ 220 (269)
. ||+||+|+|+||+++|++.+|++. .|.++|++|||
T Consensus 151 ~~~~d~ivvp~GtGg~~~G~~~~~~~~-------~~~~~ii~v~~ 188 (244)
T cd00640 151 GQKPDAVVVPVGGGGNIAGIARALKEL-------LPNVKVIGVEP 188 (244)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHh-------CCCCEEEEEee
Confidence 5 999999999999999999999999 89999999999
No 62
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=3.6e-41 Score=315.75 Aligned_cols=232 Identities=22% Similarity=0.224 Sum_probs=178.7
Q ss_pred eeccccCCcccccc-ccccCC--CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEE-EeCCChHHHHHHHHHHhc
Q psy5622 15 FVIRDQWFNSKKSH-LSELTK--MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVI-SASLGNHAQAMCYHGSRL 90 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g--~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv-~~SsGN~g~alA~~a~~~ 90 (269)
+.+..++|||++++ |++.+| .+||+|+|++|||||||+|+|..++.++.+++ ..+++ ++|+||||.|+|++|+.+
T Consensus 62 ~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G-~~~~vtetssGN~G~alA~aaa~~ 140 (419)
T TIGR01415 62 YAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEG-AKRLVTETGAGQWGSALSLAGALF 140 (419)
T ss_pred HHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcC-CCeEEEecCchHHHHHHHHHHHHc
Confidence 33444689999998 998887 58999999999999999999999999886555 44555 478999999999999999
Q ss_pred CCCeEEEEcCCC---cHHHHHHHHHcCCEEEEeCCCHHHH------------------HHHHHHHHhhhC-CeeecCCCC
Q psy5622 91 NIPVTVVMPIVA---PIMKIQACRRYGATVIVEGADMKEA------------------KNIALKKGAELG-LTYINGYLS 148 (269)
Q Consensus 91 G~~~~ivvp~~~---~~~~~~~l~~~Ga~v~~~~~~~~~~------------------~~~a~~~~~~~~-~~~~~~~~~ 148 (269)
|++|+||||... ++.|+.+|+.|||+|+.++++++++ +..+.+++++.+ ..|+.++
T Consensus 141 Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~-- 218 (419)
T TIGR01415 141 GLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGS-- 218 (419)
T ss_pred CCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCC--
Confidence 999999999853 5688999999999999999876654 345556665543 5455441
Q ss_pred CCccccCCCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh
Q psy5622 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA 224 (269)
Q Consensus 149 ~~~~~~g~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~ 224 (269)
+.| ....|+.++++||++|++ .||+||+|+|+||+++|++.+|++. ...| .+.+++|+|||++|+
T Consensus 219 -------~~n-~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~-~l~g--~~~~rviaVep~~~~ 287 (419)
T TIGR01415 219 -------VLN-HVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVAD-KLSG--KIDRRFIAAEPKACP 287 (419)
T ss_pred -------CCc-HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHH-HhcC--CCCCEEEEEeeCCCh
Confidence 344 356799999999999997 4999999999999999999999554 2233 247999999999999
Q ss_pred HHHHHHH------cCCCCCCC----------CcccccccccCCCCCHHHHHH
Q psy5622 225 SFSTAIK------HGKPTPVS----------VQPTLADGLAVPLVGWNAFET 260 (269)
Q Consensus 225 ~~~~~~~------~g~~~~~~----------~~~t~a~gl~~~~~~~~~~~~ 260 (269)
++.+++. .+...+.. ...++++||.+..+++.....
T Consensus 288 ~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l 339 (419)
T TIGR01415 288 TLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLL 339 (419)
T ss_pred hhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHH
Confidence 9976541 12212211 235678888777666543333
No 63
>KOG1252|consensus
Probab=100.00 E-value=5.5e-42 Score=303.68 Aligned_cols=196 Identities=22% Similarity=0.202 Sum_probs=174.1
Q ss_pred eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc----CCccEEEeCCChHHHHHHHHHHh
Q psy5622 15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ----KKKGVISASLGNHAQAMCYHGSR 89 (269)
Q Consensus 15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~----~~~~vv~~SsGN~g~alA~~a~~ 89 (269)
.....|+|||++++ +.....++||+|+|++||+||.|||.++.|+.++.+++ +..+++++||||+|.+||++|+.
T Consensus 46 ~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~ 125 (362)
T KOG1252|consen 46 VRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAAL 125 (362)
T ss_pred HHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHH
Confidence 44577999999998 87767779999999999999999999999999997665 35789999999999999999999
Q ss_pred cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CH---HHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcc-hhc
Q psy5622 90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DM---KEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMA 163 (269)
Q Consensus 90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~-~~~ 163 (269)
.|++|+++||+..+.+|+..|+.+||+|+.++. .+ ..+...+.++..+.+..|+.+| |+||. ...
T Consensus 126 ~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Q---------f~np~Np~~ 196 (362)
T KOG1252|consen 126 RGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQ---------FHNPGNPLA 196 (362)
T ss_pred cCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHH---------hcCCCCccc
Confidence 999999999999999999999999999999872 22 3478888888888776665443 67765 359
Q ss_pred cchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622 164 GQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF 226 (269)
Q Consensus 164 g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~ 226 (269)
||.+++.|||+|+. .+|.+|.++|||||++|+.+++|+. +|+++|++|||.+|..+
T Consensus 197 hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~-------~~~~kVv~vdp~~S~~~ 253 (362)
T KOG1252|consen 197 HYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQ-------NPNIKVVGVDPQESIVL 253 (362)
T ss_pred ccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHh-------CCCCEEEEeCCCcceec
Confidence 99999999999997 8999999999999999999999999 99999999999999655
No 64
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=9.8e-41 Score=310.82 Aligned_cols=233 Identities=21% Similarity=0.210 Sum_probs=183.8
Q ss_pred ccCCcccccc-ccccCC-CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 19 DQWFNSKKSH-LSELTK-MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 19 ~~~TPl~~~~-l~~~~g-~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
..+|||++++ |++.+| .+||+|+|++|||||||||.+..++..+.+.+....|+++|+||||+|+|++|+++|++|+|
T Consensus 48 ~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~I 127 (385)
T TIGR00263 48 GRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCEV 127 (385)
T ss_pred CCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEEE
Confidence 3599999998 998888 69999999999999999999999998875444444455799999999999999999999999
Q ss_pred EEcCC-CcH--HHHHHHHHcCCEEEEeCC---CHHHHH-HHHHHHHhh-hCCeeecCCCCCCccccCCC--Cc--c-hhc
Q psy5622 97 VMPIV-API--MKIQACRRYGATVIVEGA---DMKEAK-NIALKKGAE-LGLTYINGYLSSGLSVLGYD--HP--D-IMA 163 (269)
Q Consensus 97 vvp~~-~~~--~~~~~l~~~Ga~v~~~~~---~~~~~~-~~a~~~~~~-~~~~~~~~~~~~~~~~~g~~--n~--~-~~~ 163 (269)
|||+. .+. .|+.+|+.|||+|+.++. .++++. +.+++++++ .+.+|+.++ +. +| . ..+
T Consensus 128 v~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~---------~~~~~p~~~~~~~ 198 (385)
T TIGR00263 128 YMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGS---------AVGPHPFPTMVRD 198 (385)
T ss_pred EecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCC---------cCCCCCchHHHHH
Confidence 99985 443 567899999999999973 366764 444555655 345676542 22 22 2 258
Q ss_pred cchhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcCC
Q psy5622 164 GQGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHGK 234 (269)
Q Consensus 164 g~~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~ 234 (269)
|++|+++||++|+. .||+||+|+|+||+++|++.++. . .|.++||+|||+++ ..+..++..|.
T Consensus 199 ~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~-~-------~~~~~iigVe~~gs~~~~~~~~~~~~~g~ 270 (385)
T TIGR00263 199 FQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFI-D-------DPSVQLIGVEAGGLGIDTDKHAATLAKGS 270 (385)
T ss_pred HhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHh-h-------CCCCeEEEEEeCCCcccchhhhhhhhcCC
Confidence 99999999999972 58999999999999999999884 3 68899999999996 34456676775
Q ss_pred CC----------C-----CCCcccccccccCCCCCHHHHHHHhhhhccc
Q psy5622 235 PT----------P-----VSVQPTLADGLAVPLVGWNAFETAAPLIDKM 268 (269)
Q Consensus 235 ~~----------~-----~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~ 268 (269)
+. . .+...|+++|++++.+++..++..+...|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~ 319 (385)
T TIGR00263 271 PGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATY 319 (385)
T ss_pred eeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEE
Confidence 42 0 2234689999998888888888777666544
No 65
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.7e-40 Score=308.58 Aligned_cols=231 Identities=23% Similarity=0.248 Sum_probs=181.6
Q ss_pred cCCcccccc-ccccC-CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622 20 QWFNSKKSH-LSELT-KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV 97 (269)
Q Consensus 20 ~~TPl~~~~-l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv 97 (269)
.+|||++++ |++.+ |.+||+|+|++|||||||+|++...+..+.+.++...|+++|+||||+|+|++|+++|++|+||
T Consensus 57 rpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~ 136 (397)
T PRK04346 57 RPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIY 136 (397)
T ss_pred CCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCcEEEE
Confidence 479999998 99988 5799999999999999999999999988765555555666999999999999999999999999
Q ss_pred EcCC-Cc--HHHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-HHhh-hCCeeecCCCCCCccccCCCCcc---hhccch
Q psy5622 98 MPIV-AP--IMKIQACRRYGATVIVEGA---DMKEAKNIALK-KGAE-LGLTYINGYLSSGLSVLGYDHPD---IMAGQG 166 (269)
Q Consensus 98 vp~~-~~--~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~g~~n~~---~~~g~~ 166 (269)
||+. .+ ..|+..|+.+||+|+.++. +++++.+.+.+ +.++ .+.+|+.++ +.| .+|+ ..+||+
T Consensus 137 mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs------~~g-php~p~~v~~~q~ 209 (397)
T PRK04346 137 MGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGS------VAG-PHPYPTMVRDFQS 209 (397)
T ss_pred ecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCC------cCC-CCCchHHHHHhcc
Confidence 9985 33 3467789999999999984 67777665555 4554 355676541 122 2343 357999
Q ss_pred hHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcCCCC-
Q psy5622 167 TVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHGKPT- 236 (269)
Q Consensus 167 t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~~~- 236 (269)
+++.||.+|+. .||+||+|+|+||+++|++.+|++ ++.+++|||||.++ ..+..++..|.+.
T Consensus 210 tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~--------~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~ 281 (397)
T PRK04346 210 VIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID--------DESVRLIGVEAAGKGLETGKHAATLTKGRPGV 281 (397)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh--------CCCCeEEEEecCCCccccccccchhhcCCeee
Confidence 99999999983 599999999999999999999953 68899999999986 3345566666542
Q ss_pred --------------CCCCcccccccccCCCCCHHHHHHHhhhh
Q psy5622 237 --------------PVSVQPTLADGLAVPLVGWNAFETAAPLI 265 (269)
Q Consensus 237 --------------~~~~~~t~a~gl~~~~~~~~~~~~~~~~~ 265 (269)
......|+++||+.+.+++..+.......
T Consensus 282 ~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~ 324 (397)
T PRK04346 282 LHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGR 324 (397)
T ss_pred eccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCC
Confidence 11224789999999988877665444433
No 66
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2e-41 Score=310.05 Aligned_cols=199 Identities=24% Similarity=0.249 Sum_probs=168.1
Q ss_pred ceeccccCCcccccc-ccccCCCeEEEEeCCCCCC--CchhhHHHHHHHHhchHhcCCccEEEeC--CChHHHHHHHHHH
Q psy5622 14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVT--GSFKERGACYALLMLSEDQKKKGVISAS--LGNHAQAMCYHGS 88 (269)
Q Consensus 14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~npt--GS~K~R~a~~~l~~~~~~~~~~~vv~~S--sGN~g~alA~~a~ 88 (269)
.+.+.+++|||++++ |++.+|.+||+|+|++||+ ||||||++.+++.++. +.+.++||+++ +||||+|+|++|+
T Consensus 8 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~-~~g~~~vvt~g~s~gN~g~alA~~a~ 86 (331)
T PRK03910 8 RLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADAL-AQGADTLITAGAIQSNHARQTAAAAA 86 (331)
T ss_pred CccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH-HcCCCEEEEcCcchhHHHHHHHHHHH
Confidence 366788999999998 8888899999999999997 6999999999999875 44567888864 5999999999999
Q ss_pred hcCCCeEEEEcCCCcH--------HHHHHHHHcCCEEEEeCCC---HHHHHHHHHHHHhhhCCeeecCCCCCCccccCCC
Q psy5622 89 RLNIPVTVVMPIVAPI--------MKIQACRRYGATVIVEGAD---MKEAKNIALKKGAELGLTYINGYLSSGLSVLGYD 157 (269)
Q Consensus 89 ~~G~~~~ivvp~~~~~--------~~~~~l~~~Ga~v~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~ 157 (269)
.+|++|+||||+..++ .|+..++.|||+|+.++.+ .+.+...++++.++.+..|+.+ .++.
T Consensus 87 ~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~--------~~~~ 158 (331)
T PRK03910 87 KLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIP--------VGGS 158 (331)
T ss_pred HhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEEC--------CCCC
Confidence 9999999999998775 4558999999999999864 2233445666666554444433 1278
Q ss_pred CcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHH
Q psy5622 158 HPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFST 228 (269)
Q Consensus 158 n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~ 228 (269)
|+....|+.+++.||++|++ .||+||+|+||||+++|++++|+++ ++++++|+|||++++.+..
T Consensus 159 ~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~-------~~~~~vigVe~~~~~~~~~ 226 (331)
T PRK03910 159 NALGALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAAL-------GPDIPVIGVTVSRSAAEQE 226 (331)
T ss_pred CchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh-------CCCCeEEEEEecCCHHHHH
Confidence 99999999999999999997 6999999999999999999999999 8999999999999877653
No 67
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1.3e-40 Score=309.98 Aligned_cols=227 Identities=23% Similarity=0.236 Sum_probs=179.0
Q ss_pred CCcccccc-ccccC------CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCC
Q psy5622 21 WFNSKKSH-LSELT------KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIP 93 (269)
Q Consensus 21 ~TPl~~~~-l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~ 93 (269)
+|||++++ |++.+ |.+||+|+|++|||||||+|++...+..+.+.++...|+++|+||||+|+|++|+++|++
T Consensus 66 ~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG~AlA~aaa~~Gl~ 145 (410)
T PLN02618 66 ETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLE 145 (410)
T ss_pred CCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCc
Confidence 89999998 99877 479999999999999999999999888765444333444667999999999999999999
Q ss_pred eEEEEcCCC---cHHHHHHHHHcCCEEEEe---CCCHHHHHH-HHHHHHhh-hCCeeecCCCCCCccccCCCCc---chh
Q psy5622 94 VTVVMPIVA---PIMKIQACRRYGATVIVE---GADMKEAKN-IALKKGAE-LGLTYINGYLSSGLSVLGYDHP---DIM 162 (269)
Q Consensus 94 ~~ivvp~~~---~~~~~~~l~~~Ga~v~~~---~~~~~~~~~-~a~~~~~~-~~~~~~~~~~~~~~~~~g~~n~---~~~ 162 (269)
|+||||+.. +..|+.+|+.|||+|+.+ +++++++.. .+++++++ .+.+|+..+ +.| .+| ...
T Consensus 146 ~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs------~~g-p~P~~~~v~ 218 (410)
T PLN02618 146 CIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGS------VAG-PHPYPMMVR 218 (410)
T ss_pred EEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecC------cCC-CCCCHHHHH
Confidence 999999853 345677999999999999 568888874 44557765 445666431 111 133 246
Q ss_pred ccchhHHHHHHhhc-----CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcC
Q psy5622 163 AGQGTVGLEIVDQV-----ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHG 233 (269)
Q Consensus 163 ~g~~t~~~EI~~ql-----~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g 233 (269)
+++++++.||.+|+ ..||+||+|+|+||+++|++.+|+ . ++.+++|+|||.++ ..+..++..|
T Consensus 219 ~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~-~-------~~~v~ligVEa~G~~~~~~~~~a~l~~g 290 (410)
T PLN02618 219 DFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFI-D-------DEDVRLIGVEAAGFGLDSGKHAATLTKG 290 (410)
T ss_pred HhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHH-h-------CCCceEEEEEeCCCcccccccccchhcC
Confidence 99999999998887 369999999999999999999995 3 68999999999997 4445566666
Q ss_pred CCCC---------------CCCcccccccccCCCCCHHHHHHHhh
Q psy5622 234 KPTP---------------VSVQPTLADGLAVPLVGWNAFETAAP 263 (269)
Q Consensus 234 ~~~~---------------~~~~~t~a~gl~~~~~~~~~~~~~~~ 263 (269)
++.. ....+|+++||+++.+++. ++.+++
T Consensus 291 ~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~-~~~l~~ 334 (410)
T PLN02618 291 EVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPE-HSFLKD 334 (410)
T ss_pred CcceeccccccccccccCCCCCCcchhhhhcCCCCcHH-HHHHHh
Confidence 5421 1234789999999988877 677766
No 68
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.9e-40 Score=307.21 Aligned_cols=235 Identities=21% Similarity=0.237 Sum_probs=179.7
Q ss_pred cCCcccccc-ccccC-CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEE-eCCChHHHHHHHHHHhcCCCeEE
Q psy5622 20 QWFNSKKSH-LSELT-KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVIS-ASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 20 ~~TPl~~~~-l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~i 96 (269)
.+|||++++ |++.+ +.+||+|+|++|||||||||.+..++..+.+.+ ...+++ +|+||||+|+|++|+++|++|+|
T Consensus 33 ~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g-~~~vv~~~ssGN~g~alA~~a~~~G~~~~i 111 (365)
T cd06446 33 RPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMG-KKRVIAETGAGQHGVATATACALFGLECEI 111 (365)
T ss_pred CCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcC-CCeEEEecCchHHHHHHHHHHHHhCCCeEE
Confidence 499999998 88888 569999999999999999999999998775444 455555 79999999999999999999999
Q ss_pred EEcCCCc---HHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHH-Hhhh-CCee-ecCCCCCCccccCCCCcchhccchh
Q psy5622 97 VMPIVAP---IMKIQACRRYGATVIVEGA---DMKEAKNIALKK-GAEL-GLTY-INGYLSSGLSVLGYDHPDIMAGQGT 167 (269)
Q Consensus 97 vvp~~~~---~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~-~~~~-~~~~-~~~~~~~~~~~~g~~n~~~~~g~~t 167 (269)
|+|+..+ +.|+.+++.+||+|+.++. +++++...+.+. +++. +.+| +++ +.. .+++ ....++|++|
T Consensus 112 vvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~-~~~---~~~~-~~~~~ag~~t 186 (365)
T cd06446 112 YMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGS-VVG---PHPY-PNMVRDFQSV 186 (365)
T ss_pred EEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEeccc-ccC---CCCc-hHHHHHhhhH
Confidence 9998643 3577899999999999984 356665444443 4432 3344 332 000 0012 1235899999
Q ss_pred HHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH----HHHHcCCCC--
Q psy5622 168 VGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS----TAIKHGKPT-- 236 (269)
Q Consensus 168 ~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~----~~~~~g~~~-- 236 (269)
+++||++|++ .||+||+|+|+||+++|++++++.. +.++||+|||.+++++. .+++.|...
T Consensus 187 ~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~--------~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~ 258 (365)
T cd06446 187 IGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIND--------KDVKLIGVEAGGCGLETGGHAAYLFGGTAGVL 258 (365)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhC--------CCceEEEEcCCCCccccccceeeccCCCccee
Confidence 9999999985 5999999999999999999988753 48999999999998885 334444431
Q ss_pred -------------CCCCcccccccccCCCCCHHHHHHHhhhhccc
Q psy5622 237 -------------PVSVQPTLADGLAVPLVGWNAFETAAPLIDKM 268 (269)
Q Consensus 237 -------------~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~ 268 (269)
......|+++||.++.+.+..+...++.+|++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~ 303 (365)
T cd06446 259 HGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEY 303 (365)
T ss_pred cchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceE
Confidence 11234689999987777777777777777654
No 69
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5.6e-40 Score=305.58 Aligned_cols=232 Identities=24% Similarity=0.220 Sum_probs=181.3
Q ss_pred cCCcccccc-ccccC-CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622 20 QWFNSKKSH-LSELT-KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV 97 (269)
Q Consensus 20 ~~TPl~~~~-l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv 97 (269)
.+|||++++ |++.+ |.+||+|+|++|||||||+|.+...+..+.+.++...|+++|+||||+|+|++|+++|++|+||
T Consensus 61 ~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~ 140 (402)
T PRK13028 61 RPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALFGLECEIY 140 (402)
T ss_pred CCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCCEEEE
Confidence 589999998 99888 5699999999999999999999999988765554445667999999999999999999999999
Q ss_pred EcCCCcH---HHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-HHhh-hCCeeecCCCCCCccccCCCCcc---hhccch
Q psy5622 98 MPIVAPI---MKIQACRRYGATVIVEGA---DMKEAKNIALK-KGAE-LGLTYINGYLSSGLSVLGYDHPD---IMAGQG 166 (269)
Q Consensus 98 vp~~~~~---~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~g~~n~~---~~~g~~ 166 (269)
||+..++ .|+..|+.+||+|+.++. +++++.+.+.+ ++++ .+.+|+.++ +.| .+|+ ...|++
T Consensus 141 m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s------~~g-p~p~p~~v~~~q~ 213 (402)
T PRK13028 141 MGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGS------VVG-PHPFPMMVRDFQS 213 (402)
T ss_pred ECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecC------cCC-CCCcHHHHHHHhH
Confidence 9986433 467799999999999973 78888888755 4555 356777651 112 1333 346999
Q ss_pred hHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCC----ChHHHHHHHcCCCCC
Q psy5622 167 TVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDR----CASFSTAIKHGKPTP 237 (269)
Q Consensus 167 t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~----~~~~~~~~~~g~~~~ 237 (269)
+++.||.+|+. .||+||+|+|+||+++|++.+|++ .+.+++|||||.+ ++.+..++..|++..
T Consensus 214 tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~--------~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~ 285 (402)
T PRK13028 214 VIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD--------DESVRLVGVEPAGRGLDLGEHAATLTLGKPGV 285 (402)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh--------CCCceEEEEecCCCCcccccccccccCCCcce
Confidence 99999999972 599999999999999999999974 5789999999999 333333444555421
Q ss_pred ---------------CCCcccccccccCCCCCHHHHHHHhhhhc
Q psy5622 238 ---------------VSVQPTLADGLAVPLVGWNAFETAAPLID 266 (269)
Q Consensus 238 ---------------~~~~~t~a~gl~~~~~~~~~~~~~~~~~~ 266 (269)
....+|+++||+++.+++..+.......+
T Consensus 286 ~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~ 329 (402)
T PRK13028 286 IHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRV 329 (402)
T ss_pred ecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCc
Confidence 11246899999988888876655444433
No 70
>KOG1481|consensus
Probab=100.00 E-value=6e-41 Score=289.80 Aligned_cols=243 Identities=23% Similarity=0.222 Sum_probs=198.7
Q ss_pred cccCCCcceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHH
Q psy5622 7 VHCGQDLGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQA 82 (269)
Q Consensus 7 ~~~~~~~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~a 82 (269)
-+.+-..|+.-.+|+|||++++ |++.+|++||.|+|++||.||.|||.|.++++.+.+.++ ...|++.|+||+|++
T Consensus 35 ke~~~~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIs 114 (391)
T KOG1481|consen 35 KEPGIVSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGIS 114 (391)
T ss_pred cCCCccchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchh
Confidence 3344444677788999999999 999999999999999999999999999999999876553 567999999999999
Q ss_pred HHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC----CHHHHHHHHHHHHhhhC-------CeeecCCCCCCc
Q psy5622 83 MCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA----DMKEAKNIALKKGAELG-------LTYINGYLSSGL 151 (269)
Q Consensus 83 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~----~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~ 151 (269)
+|..|..+|++|+|+||++.+.+|.+.++.+||+|..++. +.+.-++.|++.+++.. .+|.+|
T Consensus 115 lA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQ------ 188 (391)
T KOG1481|consen 115 LAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQ------ 188 (391)
T ss_pred HHHhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhh------
Confidence 9999999999999999999999999999999999998862 44444555555444431 366788
Q ss_pred cccCCCCcch-hccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCC-cEEEEEcCCCCh----
Q psy5622 152 SVLGYDHPDI-MAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLE-IVDQGVESDRCA---- 224 (269)
Q Consensus 152 ~~~g~~n~~~-~~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~-~~vigVe~~~~~---- 224 (269)
|+|+.+ .+||.++|+|||.|.+ ++|++++.+||||+++|+.+++|+. .+. ++++..+|-+|-
T Consensus 189 ----FeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek-------~~~~v~~~laDPpGSGlYnk 257 (391)
T KOG1481|consen 189 ----FENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEK-------SDGRVAVFLADPPGSGLYNK 257 (391)
T ss_pred ----hcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhc-------CCCceEEEEeCCCCCchhhh
Confidence 899986 5899999999999997 8999999999999999999999998 664 899999999983
Q ss_pred ----HHHHHHH-cCCCCCCCCcccccccccCCCCCHHHHHHHhhhhccc
Q psy5622 225 ----SFSTAIK-HGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKM 268 (269)
Q Consensus 225 ----~~~~~~~-~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~ 268 (269)
.|+...+ +|..-. ...+||.+||.+...+.+ |.+..+++|+-
T Consensus 258 V~~GVmy~~~e~eG~r~r-~q~dti~EGIGinRiT~N-f~m~~~liD~a 304 (391)
T KOG1481|consen 258 VNYGVMYDHIETEGTRRR-NQVDTITEGIGINRITGN-FQMAEDLIDDA 304 (391)
T ss_pred hhhhhhhhhhhhcCcccC-CCcchhhhcccccccccc-cccchhhhhhh
Confidence 2333222 333222 235789999888777665 77777777753
No 71
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=2.7e-40 Score=300.07 Aligned_cols=188 Identities=24% Similarity=0.210 Sum_probs=161.1
Q ss_pred cccCCcccccc-ccccCCCeEEEEeCCCCCC--CchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHHHHHHHHhcCC
Q psy5622 18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVT--GSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQAMCYHGSRLNI 92 (269)
Q Consensus 18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~npt--GS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~alA~~a~~~G~ 92 (269)
...+|||++++ |++..|.+||+|+|++||| ||||||++.+++.++. +.+.++||++ |+||||+|+|++|+++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~-~~g~~~vv~~g~ssGN~g~alA~~a~~~G~ 82 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADAL-SKGADTVITVGAIQSNHARATALAAKKLGL 82 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHH-HcCCCEEEEcCCchhHHHHHHHHHHHHhCC
Confidence 34699999998 9888889999999999998 9999999999998874 5556789997 669999999999999999
Q ss_pred CeEEEEcCCC-cHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHHHhh----hCCeee--cCCCCCCccccCCCCcchhcc
Q psy5622 93 PVTVVMPIVA-PIMKIQACRRYGATVIVEGA-DMKEAKNIALKKGAE----LGLTYI--NGYLSSGLSVLGYDHPDIMAG 164 (269)
Q Consensus 93 ~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~a~~~~~~----~~~~~~--~~~~~~~~~~~g~~n~~~~~g 164 (269)
+|++|||+.. +..+..+++.|||+|+.++. ++++..+.+++++++ .+..|+ ++ +.||....|
T Consensus 83 ~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~~~g 152 (311)
T TIGR01275 83 DAVLVLREKEELNGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVG----------GSNSLGTLG 152 (311)
T ss_pred ceEEEecCCccCCCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCC----------CCcHHHHHH
Confidence 9999999975 45567778999999999984 666666666665543 222333 44 789999999
Q ss_pred chhHHHHHHhhcC---CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC
Q psy5622 165 QGTVGLEIVDQVA---NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC 223 (269)
Q Consensus 165 ~~t~~~EI~~ql~---~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~ 223 (269)
+.++++||++|++ .||+||+|+||||+++|++.+||++ +|+++||+|||+.+
T Consensus 153 ~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~-------~~~~~vigV~~~~~ 207 (311)
T TIGR01275 153 YVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSIL-------NEDIRPVGVAVGRF 207 (311)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh-------CCCCcEEEEEeccc
Confidence 9999999999996 7999999999999999999999999 99999999998776
No 72
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=2e-39 Score=304.47 Aligned_cols=198 Identities=22% Similarity=0.246 Sum_probs=162.8
Q ss_pred ccCCcccccc-ccccCC--CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEE-eCCChHHHHHHHHHHhcCCCe
Q psy5622 19 DQWFNSKKSH-LSELTK--MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVIS-ASLGNHAQAMCYHGSRLNIPV 94 (269)
Q Consensus 19 ~~~TPl~~~~-l~~~~g--~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~ 94 (269)
.++|||++++ |++.+| .+||+|+|++|||||||+|+|..++.++.+.+ ...+++ +|+||+|+|+|++|+.+|++|
T Consensus 75 ~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G-~~~~vtetgsGN~G~alA~aaa~~Gl~~ 153 (427)
T PRK12391 75 WRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEG-IKRLTTETGAGQWGSALALACALFGLEC 153 (427)
T ss_pred cCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCC-CCEEEEccCchHHHHHHHHHHHHcCCcE
Confidence 3699999998 998887 58999999999999999999999998876444 445665 679999999999999999999
Q ss_pred EEEEcCC---CcHHHHHHHHHcCCEEEEeCCCHHH------------------HHHHHHHHHhhh-CCeeecCCCCCCcc
Q psy5622 95 TVVMPIV---APIMKIQACRRYGATVIVEGADMKE------------------AKNIALKKGAEL-GLTYINGYLSSGLS 152 (269)
Q Consensus 95 ~ivvp~~---~~~~~~~~l~~~Ga~v~~~~~~~~~------------------~~~~a~~~~~~~-~~~~~~~~~~~~~~ 152 (269)
+||||+. .++.|+.+|+.|||+|+.+++++++ ++..+.+++++. +.+|+.+
T Consensus 154 ~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~------- 226 (427)
T PRK12391 154 TVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG------- 226 (427)
T ss_pred EEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC-------
Confidence 9999974 4668899999999999999876544 455566666554 4466655
Q ss_pred ccCCCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHH
Q psy5622 153 VLGYDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFST 228 (269)
Q Consensus 153 ~~g~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~ 228 (269)
..+...+.||.++++||++|++ .||+||+|+|+||+++|++.+|.+. +..| .+.+|+|+|||++|+++++
T Consensus 227 ---s~~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~-~~~g--~~~~riiaVEp~~~~~l~~ 300 (427)
T PRK12391 227 ---SVLNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGD-KLEG--KKDTRFIAVEPAACPTLTK 300 (427)
T ss_pred ---CCCcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHH-HhcC--CCCceEEEEeeccchhhcc
Confidence 3334567899999999999996 6999999999999999999977544 1122 1789999999999999986
Q ss_pred HH
Q psy5622 229 AI 230 (269)
Q Consensus 229 ~~ 230 (269)
++
T Consensus 301 g~ 302 (427)
T PRK12391 301 GE 302 (427)
T ss_pred cc
Confidence 53
No 73
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-40 Score=303.60 Aligned_cols=235 Identities=23% Similarity=0.265 Sum_probs=211.9
Q ss_pred ceeccccCCcccccc-ccccCCC---eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHh
Q psy5622 14 GFVIRDQWFNSKKSH-LSELTKM---EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSR 89 (269)
Q Consensus 14 ~~~~~~~~TPl~~~~-l~~~~g~---~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~ 89 (269)
...++++.||+++.+ +...++. ++|+|.|++|||||||||++..++..+.+.++ .+|+++||||+|.|+|+++.+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~aaya~r 147 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASSGNTGASAAAYAAR 147 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCCchHHHHHHHHhcc
Confidence 457899999999987 8877775 59999999999999999999999999865554 899999999999999999999
Q ss_pred cCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622 90 LNIPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 90 ~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
.|++|+|++|.+ ++..|+.+|..+|++++.+++++|||++.+++++++.++++... .-||.+++|++|+
T Consensus 148 ag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~fDda~~~vk~~~~~~~~~~~~n----------siNp~rlegq~t~ 217 (411)
T COG0498 148 AGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDAQELVKEAANREGLLSAVN----------SINPYRLEGQKTY 217 (411)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHhhCCceeecc----------ccCHHHhhhhhhh
Confidence 999999999998 99999999999999999999999999999999999888777665 5899999999999
Q ss_pred HHHHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccc
Q psy5622 169 GLEIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLAD 246 (269)
Q Consensus 169 ~~EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~ 246 (269)
++||++|+. .||+|++|+|+||++.|+++++++. ...|.+...++..+||++++.++...++.+. ....|+++
T Consensus 218 ~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~-~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~----~~~~T~a~ 292 (411)
T COG0498 218 AFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEG-LPIGKIDKAPNMNGVQAEGFSPGVYAWKEGR----ETPETIAP 292 (411)
T ss_pred HhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhc-ccccchhcCchhhhhhHhhccchhhhccccc----cccccccc
Confidence 999999998 6999999999999999999999998 6777777888999999999999998887765 34579999
Q ss_pred cccCCCCCHHHHHHHhhhhc
Q psy5622 247 GLAVPLVGWNAFETAAPLID 266 (269)
Q Consensus 247 gl~~~~~~~~~~~~~~~~~~ 266 (269)
+|++++|.+ |+++...+.
T Consensus 293 am~I~~p~n--~~r~l~a~~ 310 (411)
T COG0498 293 AMDIGNPSN--WERALFALR 310 (411)
T ss_pred ccccCCCCC--HHHHHHHHH
Confidence 999999887 666655443
No 74
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=9.7e-40 Score=299.60 Aligned_cols=203 Identities=19% Similarity=0.105 Sum_probs=168.2
Q ss_pred CCcceeccccCCcccccc-ccccCC--CeEEEEeCCCCCC---CchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHH
Q psy5622 11 QDLGFVIRDQWFNSKKSH-LSELTK--MEIFLKKDFFQVT---GSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQA 82 (269)
Q Consensus 11 ~~~~~~~~~~~TPl~~~~-l~~~~g--~~i~~K~E~~npt---GS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~a 82 (269)
..+.+.+.+++|||++++ +++.+| .+||+|+|++||+ ||+|||.+.+++.++. +.+..+|+++ |+||||+|
T Consensus 5 ~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~-~~G~~~vvs~G~s~GN~g~a 83 (337)
T PRK12390 5 KFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDAL-AQGADTLVSIGGVQSNHTRQ 83 (337)
T ss_pred CCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHH-HcCCCEEEEeCCCccHHHHH
Confidence 335677899999999998 888888 6999999999998 7889999999999875 5667888887 88999999
Q ss_pred HHHHHHhcCCCeEEEEcCCCc--------HHHHHHHHHcCCEEEEeCCCHH----HHHHHHHHHHhh-hCCeeecCCCCC
Q psy5622 83 MCYHGSRLNIPVTVVMPIVAP--------IMKIQACRRYGATVIVEGADMK----EAKNIALKKGAE-LGLTYINGYLSS 149 (269)
Q Consensus 83 lA~~a~~~G~~~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~~~~~----~~~~~a~~~~~~-~~~~~~~~~~~~ 149 (269)
+|++|+++|++|++|++..++ ..|+.+++.|||+|+.++.+++ ++.+.+.+..++ .+..|.++.
T Consensus 84 lA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 160 (337)
T PRK12390 84 VAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPA--- 160 (337)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCC---
Confidence 999999999999999876544 2367789999999999987653 666666666665 344554430
Q ss_pred CccccCCCCcchhccchhHHHHHHhhc---C-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChH
Q psy5622 150 GLSVLGYDHPDIMAGQGTVGLEIVDQV---A-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCAS 225 (269)
Q Consensus 150 ~~~~~g~~n~~~~~g~~t~~~EI~~ql---~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~ 225 (269)
....++....|+.++++||++|+ + +||+||+|+|+||+++|++.+||+. +|.+|||+|||+++.+
T Consensus 161 ----~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~-------~~~~rvigV~~~~~~~ 229 (337)
T PRK12390 161 ----GASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAAD-------GRARRVIGIDASAKPE 229 (337)
T ss_pred ----cCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhc-------CCCceEEEEEecCchH
Confidence 01134667789999999999984 4 6999999999999999999999998 9999999999999988
Q ss_pred HHH
Q psy5622 226 FST 228 (269)
Q Consensus 226 ~~~ 228 (269)
+..
T Consensus 230 ~~~ 232 (337)
T PRK12390 230 QTR 232 (337)
T ss_pred HHH
Confidence 754
No 75
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=2.9e-38 Score=286.36 Aligned_cols=227 Identities=22% Similarity=0.159 Sum_probs=175.5
Q ss_pred Ccccccc-ccccC--CCeEEEEeCCCCCC---CchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHHHHHHHHhcCCC
Q psy5622 22 FNSKKSH-LSELT--KMEIFLKKDFFQVT---GSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQAMCYHGSRLNIP 93 (269)
Q Consensus 22 TPl~~~~-l~~~~--g~~i~~K~E~~npt---GS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~alA~~a~~~G~~ 93 (269)
|||++++ |++.+ +.+||+|+|++||+ ||+|||++.+++.++. +.+.++|+++ |+||||.|+|++|+.+|++
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~-~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~ 79 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDAL-AKGADTLVTVGGIQSNHTRQVAAVAAKLGLK 79 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHH-HcCCCEEEECCCchhHHHHHHHHHHHHcCCe
Confidence 8999998 88877 56999999999999 5679999999999875 4556788887 6899999999999999999
Q ss_pred eEEEEcCCCc--------HHHHHHHHHcCCEEEEeCCCHHH----HHH-HHHHHHhhhCC-eeecCCCCCCccccCC-CC
Q psy5622 94 VTVVMPIVAP--------IMKIQACRRYGATVIVEGADMKE----AKN-IALKKGAELGL-TYINGYLSSGLSVLGY-DH 158 (269)
Q Consensus 94 ~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~~~~~~----~~~-~a~~~~~~~~~-~~~~~~~~~~~~~~g~-~n 158 (269)
|+||||++.+ ..|+.+++.|||+|+.++.++++ +.+ .++++.++.+. +++.++ + +|
T Consensus 80 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 150 (307)
T cd06449 80 CVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAG---------GSEH 150 (307)
T ss_pred EEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCC---------CCCC
Confidence 9999999876 46889999999999999865433 222 23333333332 333331 4 49
Q ss_pred cchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHH----
Q psy5622 159 PDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAI---- 230 (269)
Q Consensus 159 ~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~---- 230 (269)
|..++||.++++||++|++ .||+||+|+|+||+++|++++||++ ++.++||+|||++++++..+-
T Consensus 151 ~~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~-------~~~~~ii~V~~~~~~~~~~~~~~~~ 223 (307)
T cd06449 151 PLGGLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAAL-------GRQRRVIGIDASAKPEKTKAQVLRI 223 (307)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhc-------CCCCeEEEEEecCchHHHHHHHHHH
Confidence 9999999999999999996 5999999999999999999999999 899999999999998875431
Q ss_pred -----H-cCCCCC---CCCcccccccccCCCCCHHHHHHHhhhhc
Q psy5622 231 -----K-HGKPTP---VSVQPTLADGLAVPLVGWNAFETAAPLID 266 (269)
Q Consensus 231 -----~-~g~~~~---~~~~~t~a~gl~~~~~~~~~~~~~~~~~~ 266 (269)
. .|.... ........+.. +..++.+.++.++++..
T Consensus 224 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~v~d~e~~~a~~~la~ 267 (307)
T cd06449 224 AQAKLAEEGLEVKEEDVVLDDDYAAPE-YGIPNDETIEAIKLCAR 267 (307)
T ss_pred HHHHHHHcCCCCCcccEEEecCcccCC-CCCCCHHHHHHHHHHHH
Confidence 0 221111 11112223332 45677888888887653
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=7.5e-38 Score=287.08 Aligned_cols=200 Identities=18% Similarity=0.116 Sum_probs=167.8
Q ss_pred cceeccccCCcccccc-ccccCCC--eEEEEeCCCCCC---CchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHHHH
Q psy5622 13 LGFVIRDQWFNSKKSH-LSELTKM--EIFLKKDFFQVT---GSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQAMC 84 (269)
Q Consensus 13 ~~~~~~~~~TPl~~~~-l~~~~g~--~i~~K~E~~npt---GS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~alA 84 (269)
+.+.+.+|+|||++++ |++.+|. +||+|+|++||+ ||+|||.+.+++.++. +.+..+|+++ |+||||+|+|
T Consensus 6 ~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~-~~G~~~vvs~ggs~gN~g~alA 84 (337)
T TIGR01274 6 PRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQ-AQGCTTLVSIGGIQSNQTRQVA 84 (337)
T ss_pred CccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHH-HcCCCEEEECCCCcchHHHHHH
Confidence 5578899999999999 9988874 999999999986 7779999999999875 5667788876 7799999999
Q ss_pred HHHHhcCCCeEEEEcCCCc--------HHHHHHHHHcCCEEEEeCCCHH----HHHHHHHHHHhhh-CC-eeecCCCCCC
Q psy5622 85 YHGSRLNIPVTVVMPIVAP--------IMKIQACRRYGATVIVEGADMK----EAKNIALKKGAEL-GL-TYINGYLSSG 150 (269)
Q Consensus 85 ~~a~~~G~~~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~~~~~----~~~~~a~~~~~~~-~~-~~~~~~~~~~ 150 (269)
++|+++|++|+||||+..+ +.|+.+++.|||+|+.++++++ ++...+.+..++. +. +++..
T Consensus 85 ~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~----- 159 (337)
T TIGR01274 85 AVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPA----- 159 (337)
T ss_pred HHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCC-----
Confidence 9999999999999998543 5799999999999999987654 4555555555554 44 44444
Q ss_pred ccccCCCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622 151 LSVLGYDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF 226 (269)
Q Consensus 151 ~~~~g~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~ 226 (269)
.+..|+....|+.++++||++|++ .||+||+|+|+||+++|+++++++. ++.+|||+|||.+++++
T Consensus 160 ---~~~~~~~~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~-------~~~~~vigV~~~~~~~~ 229 (337)
T TIGR01274 160 ---GCSDHPLGGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAAD-------GRKDRVIGIDASATPEQ 229 (337)
T ss_pred ---CCCCCccchhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHh-------CCCCeEEEEEecCCHHH
Confidence 112357788899999999999953 6999999999999999999999998 89999999999999877
Q ss_pred HH
Q psy5622 227 ST 228 (269)
Q Consensus 227 ~~ 228 (269)
..
T Consensus 230 ~~ 231 (337)
T TIGR01274 230 TR 231 (337)
T ss_pred HH
Confidence 43
No 77
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.5e-38 Score=307.40 Aligned_cols=229 Identities=23% Similarity=0.282 Sum_probs=179.9
Q ss_pred cCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622 20 QWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVM 98 (269)
Q Consensus 20 ~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv 98 (269)
.+|||++++ |++.+|.+||+|+|++|||||||+|.+...+..+.+.++...++++|+||||+|+|++|+++|++|+|||
T Consensus 270 rpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m 349 (610)
T PRK13803 270 RPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACALFGLKCTIFM 349 (610)
T ss_pred CCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHHcCCcEEEEE
Confidence 589999998 9988899999999999999999999999998877544444456679999999999999999999999999
Q ss_pred cCCC---cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHH-H-HhhhCCeeecCCCCCCccccCCCCc--ch-hccchh
Q psy5622 99 PIVA---PIMKIQACRRYGATVIVEG---ADMKEAKNIALK-K-GAELGLTYINGYLSSGLSVLGYDHP--DI-MAGQGT 167 (269)
Q Consensus 99 p~~~---~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~-~-~~~~~~~~~~~~~~~~~~~~g~~n~--~~-~~g~~t 167 (269)
|+.. +..|+.+|+.+||+|+.++ .+++++.+.+.+ + ++..+.+|+.++ +.| .+| .. ..|+++
T Consensus 350 ~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~------~~g-~~p~p~~v~~~~~t 422 (610)
T PRK13803 350 GEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGS------AVG-PHPYPEMVAYFQSV 422 (610)
T ss_pred eCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCC------cCC-CCCcHHHHHHHhhH
Confidence 9864 3467889999999999997 456677554444 4 333456777652 111 133 32 368999
Q ss_pred HHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcCCCCC-
Q psy5622 168 VGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHGKPTP- 237 (269)
Q Consensus 168 ~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~~~~- 237 (269)
++.||++|+. .||+||+|+|+||+++|++.+|+ . ++.+++|||||.++ ..+..++..|.+..
T Consensus 423 ig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~-~-------~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~ 494 (610)
T PRK13803 423 IGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFL-D-------DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVL 494 (610)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHh-h-------CCCceEEEEecCCCCcccccccchhhcCCeeee
Confidence 9999999984 59999999999999999999995 3 68899999999997 34455666665521
Q ss_pred --------------CCCcccccccccCCCCCHHHHHHHhh
Q psy5622 238 --------------VSVQPTLADGLAVPLVGWNAFETAAP 263 (269)
Q Consensus 238 --------------~~~~~t~a~gl~~~~~~~~~~~~~~~ 263 (269)
....+|+++||+++.+++..+.....
T Consensus 495 ~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~ 534 (610)
T PRK13803 495 HGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFET 534 (610)
T ss_pred ccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhc
Confidence 11346899999998888876655443
No 78
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.2e-37 Score=303.02 Aligned_cols=190 Identities=23% Similarity=0.224 Sum_probs=159.1
Q ss_pred cc-CCcccccc-cccc----CC--CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhc
Q psy5622 19 DQ-WFNSKKSH-LSEL----TK--MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRL 90 (269)
Q Consensus 19 ~~-~TPl~~~~-l~~~----~g--~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~ 90 (269)
.| +|||++++ |++. +| .+||+|+|++|||||||||++..++..+.+.++..+|+++|+||||+|+|++|+++
T Consensus 323 iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~ 402 (695)
T PRK13802 323 VGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAML 402 (695)
T ss_pred CCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHc
Confidence 35 99999998 7653 45 69999999999999999999999999887666667888999999999999999999
Q ss_pred CCCeEEEEcCC---CcHHHHHHHHHcCCEEEEeCC---CHHHHHHHH-HHHHhhh-CCee-ecCCCCCCccccCCC--Cc
Q psy5622 91 NIPVTVVMPIV---APIMKIQACRRYGATVIVEGA---DMKEAKNIA-LKKGAEL-GLTY-INGYLSSGLSVLGYD--HP 159 (269)
Q Consensus 91 G~~~~ivvp~~---~~~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a-~~~~~~~-~~~~-~~~~~~~~~~~~g~~--n~ 159 (269)
|++|+||||+. .+..|+.+|+.|||+|+.++. +++++.+.+ ++++++. +.+| +++ +. ||
T Consensus 403 Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~----------~~g~~P 472 (695)
T PRK13802 403 GLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGT----------VAGPHP 472 (695)
T ss_pred CCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecc----------cCCCCC
Confidence 99999999985 467899999999999999872 567776544 5566653 3444 555 32 33
Q ss_pred c---hhccchhHHHHHHhhcC------CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622 160 D---IMAGQGTVGLEIVDQVA------NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF 226 (269)
Q Consensus 160 ~---~~~g~~t~~~EI~~ql~------~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~ 226 (269)
+ ..+|++++|+||++|+. .||+||+|+|+||+++|++.+|++ .+.+|+|||||.++.+.
T Consensus 473 ~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~--------~~~vkligVE~~g~g~~ 540 (695)
T PRK13802 473 FPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD--------DERVNLYGYEAGGNGPE 540 (695)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh--------CCCceEEEEEecCCCcc
Confidence 3 56999999999999994 599999999999999999999954 67899999999997543
No 79
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1e-36 Score=278.69 Aligned_cols=234 Identities=20% Similarity=0.138 Sum_probs=180.1
Q ss_pred cceeccccCCcccccc-ccccCCCeEEEEeCCCCCC--CchhhHHHHHHHHhchHhcCCccEE--EeCCChHHHHHHHHH
Q psy5622 13 LGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVT--GSFKERGACYALLMLSEDQKKKGVI--SASLGNHAQAMCYHG 87 (269)
Q Consensus 13 ~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~npt--GS~K~R~a~~~l~~~~~~~~~~~vv--~~SsGN~g~alA~~a 87 (269)
+.+.+.+++|||++++ |++..|++||+|+|++||+ ||||+|++.+++.++. +.+.++|+ ++|+||||+|+|++|
T Consensus 13 ~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~-~~G~~~vv~~~~ssGN~g~alA~~a 91 (329)
T PRK14045 13 PRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDAL-SRGADVVITVGAVHSNHAFVTGLAA 91 (329)
T ss_pred CCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHH-HcCCCEEEEeCccHHHHHHHHHHHH
Confidence 4567888999999998 8888899999999999996 8999999999999875 44556777 589999999999999
Q ss_pred HhcCCCeEEEEcCCCcHH-HHHHHHHcCCEEEEeCC--C---HHHHHHHHHHHHhhhCCee-ecCCCCCCccccCCCCcc
Q psy5622 88 SRLNIPVTVVMPIVAPIM-KIQACRRYGATVIVEGA--D---MKEAKNIALKKGAELGLTY-INGYLSSGLSVLGYDHPD 160 (269)
Q Consensus 88 ~~~G~~~~ivvp~~~~~~-~~~~l~~~Ga~v~~~~~--~---~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~g~~n~~ 160 (269)
+++|++|++|||...+.. +...++.+||+++.++. + .+.+.+.+++++++.+..| ++.| +.||.
T Consensus 92 ~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~---------~~n~~ 162 (329)
T PRK14045 92 KKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPG---------GASPV 162 (329)
T ss_pred HHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCC---------CCchh
Confidence 999999999999875443 66678999999988762 2 2345556666666554444 4332 68899
Q ss_pred hhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh-HHHHHHHc---
Q psy5622 161 IMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA-SFSTAIKH--- 232 (269)
Q Consensus 161 ~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~-~~~~~~~~--- 232 (269)
...|+.+...||++|++ .+|+||+|+||||+++|++.++|.. +|+++||+|+|.+.. .+...+..
T Consensus 163 ~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~-------~~~~kVigv~~~~~~~~~~~~~~~~~~ 235 (329)
T PRK14045 163 GTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAIL-------NAEWRVVGIAVGSFGEKMKEKVKNLVK 235 (329)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh-------CCCCeEEEEEecCCHHHHHHHHHHHHH
Confidence 88888888889999996 6999999999999999999999999 999999999997733 33332211
Q ss_pred ------CCC--C--CCCCcccccccccCCCCCHHHHHHHhhhhc
Q psy5622 233 ------GKP--T--PVSVQPTLADGLAVPLVGWNAFETAAPLID 266 (269)
Q Consensus 233 ------g~~--~--~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~ 266 (269)
|-. . +.-.+..+ ++ +..++..+++.++++..
T Consensus 236 ~~~~~~g~~~~~~~~~~~d~~~-~~--y~~~~~e~~~~~~~la~ 276 (329)
T PRK14045 236 KTKELLGVKVKVQEPELYDYSF-GE--YGKITKEVAKLIRSVGT 276 (329)
T ss_pred HHHHHhCCCCCccceEeccccc-CC--CCCCCHHHHHHHHHHHH
Confidence 111 1 10112233 54 34566788999888764
No 80
>PRK09225 threonine synthase; Validated
Probab=99.97 E-value=2e-30 Score=245.30 Aligned_cols=212 Identities=15% Similarity=0.139 Sum_probs=180.2
Q ss_pred CCccccccccccCCCeEEEEeCCCCCCCchhhHHHHH---HHHhchHhcCCccEEEeCCChHHHHH-HHHHHhcCCCeEE
Q psy5622 21 WFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACY---ALLMLSEDQKKKGVISASLGNHAQAM-CYHGSRLNIPVTV 96 (269)
Q Consensus 21 ~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~---~l~~~~~~~~~~~vv~~SsGN~g~al-A~~a~~~G~~~~i 96 (269)
.+||.++ +-++|+..-+++||||||||++.. ++.++.+ ++..+|+++||||+|.|+ +.++.+.|++|+|
T Consensus 88 ~~pl~~l------~~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V 160 (462)
T PRK09225 88 IAPLVQL------DDNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGATSGDTGSAAAEAFRGKPNVRVVI 160 (462)
T ss_pred ccceEEe------CCCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcCCCcHHHHHHHHHhCcCCCEEEE
Confidence 4777764 236899999999999999999988 7777765 557889999999999998 7889999999999
Q ss_pred EEcCC-CcHHHHHHHHHc-CCEE--EEeCCCHHHHHHHHHHHHhh------hCCeeecCCCCCCccccCCCCcchhccch
Q psy5622 97 VMPIV-APIMKIQACRRY-GATV--IVEGADMKEAKNIALKKGAE------LGLTYINGYLSSGLSVLGYDHPDIMAGQG 166 (269)
Q Consensus 97 vvp~~-~~~~~~~~l~~~-Ga~v--~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~g~~n~~~~~g~~ 166 (269)
++|++ +++.|+++|..+ |++| +.+++++|++++.++++.++ .+++-.|. .||.+++|+.
T Consensus 161 ~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-----------iN~~Ri~gQ~ 229 (462)
T PRK09225 161 LYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANS-----------INIGRLLAQI 229 (462)
T ss_pred EEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEec-----------cCHHHHHHHH
Confidence 99996 999999999999 9977 67899999999999887665 34444554 5899999999
Q ss_pred hHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcc
Q psy5622 167 TVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP 242 (269)
Q Consensus 167 t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~ 242 (269)
++++|+++|+. .||.|++|+|+||.+.|.+++ +++ | -|-.|+|+++ ..++++.+.++.|...+.+...
T Consensus 230 ~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A-k~m----G--lpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~ 301 (462)
T PRK09225 230 VYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA-KKM----G--LPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVA 301 (462)
T ss_pred HHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHH-HHc----C--CCcceEEEEe-cCChHHHHHHHcCCCccCCCCC
Confidence 99999999996 389999999999999999988 444 3 2456899997 7788999999999866655678
Q ss_pred cccccccCCCCCHHHHHH
Q psy5622 243 TLADGLAVPLVGWNAFET 260 (269)
Q Consensus 243 t~a~gl~~~~~~~~~~~~ 260 (269)
|++.+|+++.|++ +++
T Consensus 302 T~s~amdI~~psn--~eR 317 (462)
T PRK09225 302 TLSPAMDISVSSN--FER 317 (462)
T ss_pred CcCchhhcCCCCc--HHH
Confidence 9999999999888 566
No 81
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.96 E-value=4.4e-28 Score=229.42 Aligned_cols=216 Identities=16% Similarity=0.100 Sum_probs=175.0
Q ss_pred CCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHH---HHhchHh-cCCccEEEeCCChHHHH-HHHHHHhcCCCeE
Q psy5622 21 WFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYA---LLMLSED-QKKKGVISASLGNHAQA-MCYHGSRLNIPVT 95 (269)
Q Consensus 21 ~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~---l~~~~~~-~~~~~vv~~SsGN~g~a-lA~~a~~~G~~~~ 95 (269)
.+||.++ +-++|++..+|+||||||||++..+ +.++.+. .+..+|+++||||+|.| ++.++.+.|++|+
T Consensus 87 ~~pl~~l------~~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~ 160 (460)
T cd01560 87 IAPLVQL------GDNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVV 160 (460)
T ss_pred ccceEEe------CCCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHhCcCCCEEE
Confidence 4677663 3368999999999999999999876 5555433 36778999999999999 5889999999999
Q ss_pred EEEcCC-CcHHHHHHHHHcCC---EEEEeCCCHHHHHHHHHHHHhhh------CCeeecCCCCCCccccCCCCcchhccc
Q psy5622 96 VVMPIV-APIMKIQACRRYGA---TVIVEGADMKEAKNIALKKGAEL------GLTYINGYLSSGLSVLGYDHPDIMAGQ 165 (269)
Q Consensus 96 ivvp~~-~~~~~~~~l~~~Ga---~v~~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~g~~n~~~~~g~ 165 (269)
|++|.+ +++.|+.+|..+|+ +++.+++++|+|++.++++.++. +++-.|. .|+.+++|+
T Consensus 161 Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~fDd~q~~vk~~~~d~~~~~~~~l~saNS-----------iN~~Ri~~Q 229 (460)
T cd01560 161 VLYPKGGVSPIQELQMTTLPADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLKLSSANS-----------INWARILAQ 229 (460)
T ss_pred EEEcCCCCCHHHHHHHHhhCCCceEEEEEcCCHHHHHHHHHHHhcChhhHhcceEEEEec-----------cCHHHHHHH
Confidence 999996 99999999999997 89999999999999999877653 3333444 589999999
Q ss_pred hhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChH-HHHHHHcCCCCCC-
Q psy5622 166 GTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCAS-FSTAIKHGKPTPV- 238 (269)
Q Consensus 166 ~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~-~~~~~~~g~~~~~- 238 (269)
.+.++|+++|+. .++.|+||+|+||.+.|.+++.+ + | -|-.|+|+++ ++++ +.+.++.|...+.
T Consensus 230 ~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~-m----G--lpi~kli~a~--n~n~il~~~~~~G~y~~~~ 300 (460)
T cd01560 230 IVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKK-M----G--LPIKKLIVAT--NENDVLRRFFKTGRYDRRE 300 (460)
T ss_pred HHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHH-c----C--CCCccEEEEe--CCChHHHHHHHcCCCcCCC
Confidence 999999999996 48999999999999999999843 3 3 2556788854 3444 5557788876544
Q ss_pred CCcccccccccCCCCCHHHHHHHhhh
Q psy5622 239 SVQPTLADGLAVPLVGWNAFETAAPL 264 (269)
Q Consensus 239 ~~~~t~a~gl~~~~~~~~~~~~~~~~ 264 (269)
+...|++.+|+++.|++ ++++-..
T Consensus 301 ~~~~T~spamdI~~psn--~eR~L~~ 324 (460)
T cd01560 301 SLKQTLSPAMDILKSSN--FERLLFL 324 (460)
T ss_pred CCCCCcCchhhcCCCCC--HHHHHHH
Confidence 45689999999999887 5555443
No 82
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.95 E-value=9.6e-28 Score=211.34 Aligned_cols=223 Identities=24% Similarity=0.273 Sum_probs=177.4
Q ss_pred ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622 19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV 97 (269)
Q Consensus 19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv 97 (269)
-.+|||...+ |++.+|.+||+|+|++|.||++|...+...+.-+++-++.+.|.+...|.||.|.|.+|+++|++|+|+
T Consensus 54 GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iY 133 (396)
T COG0133 54 GRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIY 133 (396)
T ss_pred CCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEE
Confidence 3699999998 999999999999999999999999999998887766667777888999999999999999999999999
Q ss_pred EcCC-Cc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHH-HHh-hhCCeeecCCCCCCccccCCCCcc---hhccch
Q psy5622 98 MPIV-AP--IMKIQACRRYGATVIVEG---ADMKEAKNIALK-KGA-ELGLTYINGYLSSGLSVLGYDHPD---IMAGQG 166 (269)
Q Consensus 98 vp~~-~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~~~g~~n~~---~~~g~~ 166 (269)
|... +. ..+.-.|+.+||+|+.+. .+.+|+.+.|.+ +.. -...+|+.+ |+.| .+|+ ...-++
T Consensus 134 MGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iG------sa~G-PHPyP~iVRdFQ~ 206 (396)
T COG0133 134 MGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIG------SAAG-PHPYPTIVRDFQS 206 (396)
T ss_pred ecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEe------eccC-CCCchHHHHHHHH
Confidence 9763 33 345668999999999986 467888887765 333 345788766 4444 4554 457789
Q ss_pred hHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcCCCCC
Q psy5622 167 TVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHGKPTP 237 (269)
Q Consensus 167 t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~~~~ 237 (269)
.|+.|.-+|+- -||.||.|+|+|+++.|++..|.+ ++.+++||||+.+- .-...++..|++..
T Consensus 207 vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~--------d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~Gv 278 (396)
T COG0133 207 VIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID--------DESVRLIGVEAAGKGIETGKHAATLTAGRPGV 278 (396)
T ss_pred HHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC--------CCCceEEEeccCcCccCCCccceeecCCCcee
Confidence 99999999963 599999999999999999988853 46899999999883 22333444555432
Q ss_pred CC---------------CcccccccccCCCCCHH
Q psy5622 238 VS---------------VQPTLADGLAVPLVGWN 256 (269)
Q Consensus 238 ~~---------------~~~t~a~gl~~~~~~~~ 256 (269)
.. ...||+.||+.|.++++
T Consensus 279 lhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPe 312 (396)
T COG0133 279 LHGMKTYLLQDEDGQILESHSISAGLDYPGVGPE 312 (396)
T ss_pred eecccceeeEcCCCCEeeeeeeccCCCCCCCChh
Confidence 11 14689999999988775
No 83
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.93 E-value=2.7e-25 Score=194.83 Aligned_cols=233 Identities=23% Similarity=0.213 Sum_probs=196.0
Q ss_pred CCcccccc-----ccccCC----CeEEEEeCCCCC-CCchhhHHHHHHHHhchHhc------------------------
Q psy5622 21 WFNSKKSH-----LSELTK----MEIFLKKDFFQV-TGSFKERGACYALLMLSEDQ------------------------ 66 (269)
Q Consensus 21 ~TPl~~~~-----l~~~~g----~~i~~K~E~~np-tGS~K~R~a~~~l~~~~~~~------------------------ 66 (269)
.+||++.+ |.+++. .++|+|++++.| +||.|.|+..|-+....++.
T Consensus 78 ES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~F 157 (443)
T COG3048 78 ESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDF 157 (443)
T ss_pred ccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHH
Confidence 78888654 444332 389999999999 69999999888776543321
Q ss_pred -CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCee-ec
Q psy5622 67 -KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTY-IN 144 (269)
Q Consensus 67 -~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~-~~ 144 (269)
....|...|+||.|.|+....+++|+++++.|+.++..+|++.+|..|.+|+....||..+++..++-++..+..| ++
T Consensus 158 Fs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~DY~~AVeeGRk~a~~DP~c~FiD 237 (443)
T COG3048 158 FSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQDYGVAVEEGRKEAESDPNCFFID 237 (443)
T ss_pred HHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecchhhHHHHHhhhhhccCCceEEec
Confidence 1235888999999999999999999999999999999999999999999999999999999999999888877544 55
Q ss_pred CCCCCCccccCCCCcchhccchhHHHHHHhhcC---------CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEE
Q psy5622 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA---------NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVD 215 (269)
Q Consensus 145 ~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~---------~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~v 215 (269)
+ .+......||...+..+-.|+. .|-.|..|||.||...|++.++|..+ +.++++
T Consensus 238 D----------E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~f------gd~Vhc 301 (443)
T COG3048 238 D----------ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAF------GDHVHC 301 (443)
T ss_pred c----------cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhh------cCceEE
Confidence 5 3334567999999999999985 47789999999999999999999986 889999
Q ss_pred EEEcCCCChHHHHHHHcCCCCCCCC------cccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622 216 QGVESDRCASFSTAIKHGKPTPVSV------QPTLADGLAVPLVGWNAFETAAPLIDKMF 269 (269)
Q Consensus 216 igVe~~~~~~~~~~~~~g~~~~~~~------~~t~a~gl~~~~~~~~~~~~~~~~~~~~~ 269 (269)
+-+||..+|||.-.+..|......+ ..|-||||+|+.|+..+-..+.+++|+.+
T Consensus 302 fFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~ 361 (443)
T COG3048 302 FFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYY 361 (443)
T ss_pred EEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcE
Confidence 9999999999988888886443322 34789999999999988889999998753
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.91 E-value=9.5e-24 Score=186.59 Aligned_cols=195 Identities=22% Similarity=0.238 Sum_probs=153.9
Q ss_pred cCCcccccc-ccccCCC--eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622 20 QWFNSKKSH-LSELTKM--EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96 (269)
Q Consensus 20 ~~TPl~~~~-l~~~~g~--~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i 96 (269)
.+|||+++. |.+.+|. +||+|.|+..||||+|...|......+..++-...+.+...|.+|.|++++|+.+|++|+|
T Consensus 77 RPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQWGsAlslA~alf~lk~~V 156 (432)
T COG1350 77 RPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWGSALSLAAALFGLKATV 156 (432)
T ss_pred CCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchHHHHHHHHHHHhCceeEE
Confidence 699999998 9988875 9999999999999999999999998886555444455578899999999999999999999
Q ss_pred EEcCC---CcHHHHHHHHHcCCEEEEeCCCHHHH------------------HHHHHHHHhhhC-CeeecCCCCCCcccc
Q psy5622 97 VMPIV---APIMKIQACRRYGATVIVEGADMKEA------------------KNIALKKGAELG-LTYINGYLSSGLSVL 154 (269)
Q Consensus 97 vvp~~---~~~~~~~~l~~~Ga~v~~~~~~~~~~------------------~~~a~~~~~~~~-~~~~~~~~~~~~~~~ 154 (269)
||-.. ..+.++-.|+.|||+|+..+++..+. +..|.+.+-+++ ..|..+
T Consensus 157 ~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lG--------- 227 (432)
T COG1350 157 FMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLG--------- 227 (432)
T ss_pred EEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecch---------
Confidence 99653 56778889999999999887554433 333344444433 455444
Q ss_pred CCCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622 155 GYDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS 227 (269)
Q Consensus 155 g~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~ 227 (269)
.--.....|+..+|.|..+|++ .||.++.|||+|++++|+..-|-.- +..| ....++|+|+|..|+.|.
T Consensus 228 -SVlnhvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d-~l~g--~~~~~fiAvep~a~P~lT 300 (432)
T COG1350 228 -SVLNHVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGD-KLRG--KKETRFIAVEPKACPKLT 300 (432)
T ss_pred -hHHHHHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhh-hhcC--CceeEEEEeCCccCCccc
Confidence 2223457899999999988875 6999999999999999999877443 2223 234899999999999885
No 85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.90 E-value=1.2e-22 Score=178.74 Aligned_cols=199 Identities=20% Similarity=0.198 Sum_probs=163.1
Q ss_pred cceeccccCCcccccc-ccccCCCeEEEEeCCCCC--CCchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHHHHHHH
Q psy5622 13 LGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQV--TGSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQAMCYHG 87 (269)
Q Consensus 13 ~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~alA~~a 87 (269)
+.+.+..++||+-+++ +++.+|++||+|+|++.+ .|.+|.|...+++.++. .++.+++|+. ..+||.+++|++|
T Consensus 7 ~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal-~~g~dTlvT~GgiQSNh~r~tAavA 85 (323)
T COG2515 7 PRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEAL-RKGADTLVTYGGIQSNHVRQTAAVA 85 (323)
T ss_pred CccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhh-hcCCcEEEEecccchhHHHHHHHHH
Confidence 4455667799999999 999999999999999965 38899999999998875 6778899994 4599999999999
Q ss_pred HhcCCCeEEEEcCCC----cHHHHHHHHHcCCEEEEeCCCHH-----HHHHHHHHHHhhhCCeeecCCCCCCccccCCCC
Q psy5622 88 SRLNIPVTVVMPIVA----PIMKIQACRRYGATVIVEGADMK-----EAKNIALKKGAELGLTYINGYLSSGLSVLGYDH 158 (269)
Q Consensus 88 ~~~G~~~~ivvp~~~----~~~~~~~l~~~Ga~v~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n 158 (269)
+++|++|+.++.... -..+....+.+|+++..++...+ .....++++.++-+..|+.+ +|..|
T Consensus 86 ~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp--------~GG~~ 157 (323)
T COG2515 86 AKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIP--------EGGSS 157 (323)
T ss_pred HhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEec--------cCCcC
Confidence 999999999996544 12256677789999999984322 22233444444445667666 55689
Q ss_pred cchhccchhHHHHHHhhcC---CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622 159 PDIMAGQGTVGLEIVDQVA---NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS 227 (269)
Q Consensus 159 ~~~~~g~~t~~~EI~~ql~---~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~ 227 (269)
|....||...+.||.+|.+ .+|+||+++|||||.+|+..++... ++..+|||+...+.....
T Consensus 158 ~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~-------~~~~~ViG~~v~~~~~~~ 222 (323)
T COG2515 158 PLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQL-------GPDVEVIGIDVSADPEKL 222 (323)
T ss_pred ccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhc-------cCCCceEEEeecCCHHHH
Confidence 9999999999999999987 6999999999999999999999988 899999999998876653
No 86
>KOG1395|consensus
Probab=99.90 E-value=1.5e-23 Score=186.74 Aligned_cols=223 Identities=24% Similarity=0.249 Sum_probs=163.2
Q ss_pred ccCCcccccc-ccccC--CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622 19 DQWFNSKKSH-LSELT--KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95 (269)
Q Consensus 19 ~~~TPl~~~~-l~~~~--g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 95 (269)
-.+|||++++ |.+.+ |.+||+|+|++|||||+|...|...+..+++.+++..|.+...|.||.|+|.+|+++|++|+
T Consensus 120 gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~ 199 (477)
T KOG1395|consen 120 GRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCT 199 (477)
T ss_pred CCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceE
Confidence 3689999998 88766 56999999999999999999999998888767777777889999999999999999999999
Q ss_pred EEEcCC---CcHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHH--HhhhCCeeecCCCCCCccccCCCCcc---hhcc
Q psy5622 96 VVMPIV---APIMKIQACRRYGATVIVEGA---DMKEAKNIALKK--GAELGLTYINGYLSSGLSVLGYDHPD---IMAG 164 (269)
Q Consensus 96 ivvp~~---~~~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~g~~n~~---~~~g 164 (269)
|+|..+ ..+-++-.||.+||+|+.+.. ...++...+.++ ..-.-.+|+.. |..| .+|+ ...=
T Consensus 200 v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~g------s~~g-php~pt~vr~f 272 (477)
T KOG1395|consen 200 VYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAG------SAIG-PHPYPTVVRTF 272 (477)
T ss_pred EEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeec------ccCC-CCCcHHHHHHH
Confidence 999764 455678889999999998863 334444444332 22223455544 1122 2333 2345
Q ss_pred chhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCC----ChHHHHHHHcCCC
Q psy5622 165 QGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDR----CASFSTAIKHGKP 235 (269)
Q Consensus 165 ~~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~----~~~~~~~~~~g~~ 235 (269)
+.+|+-|-..|.. .||.||.|+|+|++.+|+..-|.. +..++.|+|+..+ ++.+...+..|+.
T Consensus 273 hsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~--------dk~v~~igveaagdg~dtp~hsatltagd~ 344 (477)
T KOG1395|consen 273 HSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR--------DKSVGMIGVEAAGDGVDTPKHSATLTAGDV 344 (477)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc--------cchhheeeeeecccccCCcchhceeecccc
Confidence 6778888766642 699999999999999999998864 3467778877655 4555444444443
Q ss_pred CCC---------------CCcccccccccCCCCCHH
Q psy5622 236 TPV---------------SVQPTLADGLAVPLVGWN 256 (269)
Q Consensus 236 ~~~---------------~~~~t~a~gl~~~~~~~~ 256 (269)
... -..++|..||+.+.++++
T Consensus 345 Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPe 380 (477)
T KOG1395|consen 345 GVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPE 380 (477)
T ss_pred cccccceeeeeeccCCccccCCccccCCCCCCCChh
Confidence 211 125678889988877664
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=95.58 E-value=0.068 Score=44.38 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCCe-EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCC
Q psy5622 80 AQAMCYHGSRLNIPV-TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDH 158 (269)
Q Consensus 80 g~alA~~a~~~G~~~-~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n 158 (269)
|..+..+++.+|.++ .-+.+.+.-..-++.+...|-+|..++++.....+.+..+.++.+..-+.. +.+
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg----------~~~ 82 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVG----------YHH 82 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEE----------ecC
Confidence 578899999999887 333344444556667777889999999987777777788888876555544 444
Q ss_pred cchhccchhHHHHHHhhcC--CCCEEEEecCcchH
Q psy5622 159 PDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGL 191 (269)
Q Consensus 159 ~~~~~g~~t~~~EI~~ql~--~~d~vv~p~G~Gg~ 191 (269)
+.. ...--.+|++++. +||.|++++|+---
T Consensus 83 g~f---~~~~~~~i~~~I~~~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 83 GYF---DEEEEEAIINRINASGPDIVFVGLGAPKQ 114 (172)
T ss_pred CCC---ChhhHHHHHHHHHHcCCCEEEEECCCCHH
Confidence 432 2334455666664 79999999998644
No 88
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=93.03 E-value=0.7 Score=38.30 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCCeEEEEcC-CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCC
Q psy5622 80 AQAMCYHGSRLNIPVTVVMPI-VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDH 158 (269)
Q Consensus 80 g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n 158 (269)
|..+..+++.+|.+..--++. +.-+.-++.+...+.+|..++++.+...+.++++.++.+...+.. +.+
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g----------~~~ 80 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVG----------YHH 80 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEE----------ecC
Confidence 578899999999873222221 222344556666789999999888777777778888876555443 333
Q ss_pred cchhccchhHHHHHHhhcC--CCCEEEEecCcchH
Q psy5622 159 PDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGL 191 (269)
Q Consensus 159 ~~~~~g~~t~~~EI~~ql~--~~d~vv~p~G~Gg~ 191 (269)
+..- ...-.++++++. +||.|++++|.---
T Consensus 81 g~~~---~~~~~~i~~~I~~~~pdiv~vglG~PkQ 112 (171)
T cd06533 81 GYFG---PEEEEEIIERINASGADILFVGLGAPKQ 112 (171)
T ss_pred CCCC---hhhHHHHHHHHHHcCCCEEEEECCCCHH
Confidence 3211 111223666665 79999999998543
No 89
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=90.74 E-value=1.4 Score=36.84 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCeEEEEc-CCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCC
Q psy5622 80 AQAMCYHGSRLNIPVTVVMP-IVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDH 158 (269)
Q Consensus 80 g~alA~~a~~~G~~~~ivvp-~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n 158 (269)
|..+.++++.+|.+..--++ .+.-..-++.....|.+|..++++...+.+.++++.++.+..-+... .||-+
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~-------~g~f~ 85 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA-------FGPLE 85 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE-------CCCCC
Confidence 46788999999876432222 12222334455567889999998877777788888887654443330 11322
Q ss_pred cchhccchhHHHHHHhhcC--CCCEEEEecCcc
Q psy5622 159 PDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGG 189 (269)
Q Consensus 159 ~~~~~g~~t~~~EI~~ql~--~~d~vv~p~G~G 189 (269)
+ .--.+|.+++. .+|.++|++|+=
T Consensus 86 ~-------~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 86 P-------EERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred h-------HHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 2 12245666665 799999999983
No 90
>KOG0025|consensus
Probab=87.17 E-value=4 Score=37.02 Aligned_cols=89 Identities=19% Similarity=0.063 Sum_probs=65.2
Q ss_pred eEEEEeCCCCC-----CCchhhHHHHHHHHhchHhcCCccEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHH
Q psy5622 36 EIFLKKDFFQV-----TGSFKERGACYALLMLSEDQKKKGVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQ 108 (269)
Q Consensus 36 ~i~~K~E~~np-----tGS~K~R~a~~~l~~~~~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~ 108 (269)
+-++|.+..-| |-+.---.|+.+|.+...-.+++.||- +..+--|+++--.|+.+|++.+=++.+.. -++-.+
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~ 203 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKK 203 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHH
Confidence 57788877555 455555668888888765555666665 44456678888889999999999997654 345567
Q ss_pred HHHHcCCEEEEeCCCH
Q psy5622 109 ACRRYGATVIVEGADM 124 (269)
Q Consensus 109 ~l~~~Ga~v~~~~~~~ 124 (269)
+++.+||+-++.+...
T Consensus 204 ~Lk~lGA~~ViTeeel 219 (354)
T KOG0025|consen 204 QLKSLGATEVITEEEL 219 (354)
T ss_pred HHHHcCCceEecHHHh
Confidence 8899999999887543
No 91
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=85.59 E-value=4.7 Score=34.38 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=41.0
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
+|...+|+.|..++.+....+.++.+++.+. +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5678899999999999888999999999766 4556677888999988554
No 92
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=84.94 E-value=5.2 Score=35.19 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=54.7
Q ss_pred HHHHHHHHHhc--CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCC
Q psy5622 80 AQAMCYHGSRL--NIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYD 157 (269)
Q Consensus 80 g~alA~~a~~~--G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~ 157 (269)
|..+.++++.+ |.+..-+...+.-..-++.....|-+|..++++...+.+.++++.++.+...+.. -.||.
T Consensus 69 G~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~-------~~Gyf 141 (243)
T PRK03692 69 GISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGS-------QDGYF 141 (243)
T ss_pred CHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEE-------eCCCC
Confidence 34666776665 4331111121222333444556788999999887777777777777664322211 01233
Q ss_pred CcchhccchhHHHHHHhhcC--CCCEEEEecCcc
Q psy5622 158 HPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGG 189 (269)
Q Consensus 158 n~~~~~g~~t~~~EI~~ql~--~~d~vv~p~G~G 189 (269)
++. -..+|++++. .+|.+++++|.-
T Consensus 142 ~~~-------e~~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 142 TPE-------QRQALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred CHH-------HHHHHHHHHHhcCCCEEEEECCCc
Confidence 321 1244666665 799999999873
No 93
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=82.43 E-value=14 Score=31.84 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=39.9
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcC-CEEEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYG-ATVIVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~G-a~v~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
.+|+.++|.-|.++|......|.++++.-..... +...+.++..+ ...+.++ .+.++..+...+..++.+
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5788888999999999998999986665433211 11123344344 2223344 344454445555444433
No 94
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=82.31 E-value=12 Score=32.97 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=38.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.++++....|..|..++..|+.+|.+.++++ +.++.|++..+.+|++.+..
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~ 171 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALAE 171 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEecC
Confidence 4556666679999999999999999855555 44667888899999976543
No 95
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=81.79 E-value=20 Score=30.87 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=55.8
Q ss_pred hcCCcc-EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeee
Q psy5622 65 DQKKKG-VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143 (269)
Q Consensus 65 ~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~ 143 (269)
+++-+. =|+.++--...++...++.++ ++.|=...-.++...++....||+.++.|+--.+..+ .+.+.+..|+
T Consensus 36 ~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~----~a~~~~ip~~ 110 (211)
T COG0800 36 EGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAK----AANRYGIPYI 110 (211)
T ss_pred HcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHH----HHHhCCCccc
Confidence 444333 466888888889999999998 6665445556888999999999999999975555544 4555677777
Q ss_pred cC
Q psy5622 144 NG 145 (269)
Q Consensus 144 ~~ 145 (269)
.+
T Consensus 111 PG 112 (211)
T COG0800 111 PG 112 (211)
T ss_pred CC
Confidence 76
No 96
>KOG1201|consensus
Probab=81.34 E-value=17 Score=32.95 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=54.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEE-cCCCcHHHHHHHHHcCCEE--EEeC-CCHHHHHHHHHHHHhhhCCee
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVM-PIVAPIMKIQACRRYGATV--IVEG-ADMKEAKNIALKKGAELGLTY 142 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv-p~~~~~~~~~~l~~~Ga~v--~~~~-~~~~~~~~~a~~~~~~~~~~~ 142 (269)
...+|+.+++-.|+++|.--++.|-+.++.= ......+..+.++..| ++ ..++ .+.+|..+.+.+.-++.|...
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~e~G~V~ 116 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKKEVGDVD 116 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHHhcCCce
Confidence 4457888888899999999999998554432 2234455667777777 55 4566 788999999999999988544
No 97
>PRK06720 hypothetical protein; Provisional
Probab=80.92 E-value=20 Score=29.41 Aligned_cols=70 Identities=6% Similarity=-0.036 Sum_probs=38.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH-HHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI-MKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..++--|.++|......|.+++++-...... .-.+.++..|.++..+ + .+..+..+...+..++
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3457777777889999988888888766654322111 1123344456554433 2 2344444444443333
No 98
>PRK07814 short chain dehydrogenase; Provisional
Probab=80.83 E-value=18 Score=31.29 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=26.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
+..+|+..+|--|.+++......|.+++++..
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r 42 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAAR 42 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 45688888899999999988888998776654
No 99
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=80.78 E-value=13 Score=32.05 Aligned_cols=72 Identities=11% Similarity=0.043 Sum_probs=47.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+ + .+.++..+...+..++.+
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45688888999999999999999998776654322223334555667777544 3 455555555565555543
No 100
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.28 E-value=7.5 Score=35.49 Aligned_cols=51 Identities=16% Similarity=0.060 Sum_probs=40.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI 118 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 118 (269)
.++++....|..|...+.+|+.+|.+++++.+...++.|++.++.+|++.+
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 345555567999999999999999986666665557788899999999974
No 101
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=80.24 E-value=11 Score=31.76 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=40.7
Q ss_pred cEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCC
Q psy5622 70 GVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGL 140 (269)
Q Consensus 70 ~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~ 140 (269)
++++ .|||-+|.++|..+...|.+++++..+..-+. -.+.+++.+.. ..|-.+.+.+..++.+.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s-a~em~~~~~~~~~~~Di 85 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES-AEEMLEAVKELLPSADI 85 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS-HHHHHHHHHHHGGGGSE
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc-hhhhhhhhccccCccee
Confidence 4555 89999999999999999999999997642111 24777777765 34555666666665543
No 102
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.38 E-value=23 Score=27.93 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=46.9
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc----HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP----IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~----~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~ 139 (269)
.+|+..++.-|.++|....+.|-..++++..+.+ ......++..|.++..+. .+.++..+..++..++.+
T Consensus 3 ~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 3 VLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4788889999999999988887766666655522 223445677888887765 445555555565554444
No 103
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=79.34 E-value=41 Score=33.70 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=44.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHH
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEA 127 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~ 127 (269)
.++++....|..|+.+|..-.+.|++++++ +.++.+.+.++.+|.+++.-+.+-.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat~~~~ 456 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDATRMDL 456 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCCCHHH
Confidence 468999999999999999999999998776 335667888888898887776543343
No 104
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=78.96 E-value=12 Score=33.94 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=42.8
Q ss_pred ccEEEeCC---ChHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHHHHHHcCCEEEEeCCCHHHH
Q psy5622 69 KGVISASL---GNHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQACRRYGATVIVEGADMKEA 127 (269)
Q Consensus 69 ~~vv~~Ss---GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~~~~~~~ 127 (269)
.+|.-... +|.+.|+..+++++|+++.++.|++. ++..++.++..|+++..... .+++
T Consensus 151 ~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d-~~~a 213 (301)
T TIGR00670 151 LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETES-LEEV 213 (301)
T ss_pred CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECC-HHHH
Confidence 34444444 69999999999999999999999974 55555667778998876543 3443
No 105
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=78.93 E-value=14 Score=28.71 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=51.5
Q ss_pred HHHHHHhcCCCeEEEEcCCCcHHHH-HHHHHcCCEEEEe-CCCHHHHHHHHHHHHhhhC--CeeecCCCCCCccccCCCC
Q psy5622 83 MCYHGSRLNIPVTVVMPIVAPIMKI-QACRRYGATVIVE-GADMKEAKNIALKKGAELG--LTYINGYLSSGLSVLGYDH 158 (269)
Q Consensus 83 lA~~a~~~G~~~~ivvp~~~~~~~~-~~l~~~Ga~v~~~-~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~g~~n 158 (269)
|+...+..+.+..++.......... ......+.+++.- ++++.+++..+.+.+ ..+ ...+.+ .+-
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g~dLG~Rm~~a~~~~-~~g~~~vvliG----------sD~ 70 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQGGDLGERMANAFQQA-ARGYEPVVLIG----------SDC 70 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--SSSHHHHHHHHHHHH-HTT-SEEEEE-----------SS-
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCCCCHHHHHHHHHHHH-HcCCCcEEEEc----------CCC
Confidence 3456677788888887555443333 3366677777765 489999998887777 333 333444 566
Q ss_pred cchhccchhHHHHHHhhcCCCCEEEEecCcch
Q psy5622 159 PDIMAGQGTVGLEIVDQVANIDAIVVPVGGGG 190 (269)
Q Consensus 159 ~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg 190 (269)
|..-. ..-.+..+.|...|.|+.|+--||
T Consensus 71 P~l~~---~~l~~A~~~L~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 71 PDLTP---DDLEQAFEALQRHDVVLGPAEDGG 99 (122)
T ss_dssp TT--H---HHHHHHHHHTTT-SEEEEEBTTSS
T ss_pred CCCCH---HHHHHHHHHhccCCEEEeeccCCC
Confidence 76433 334455555666799999997665
No 106
>PRK12743 oxidoreductase; Provisional
Probab=78.90 E-value=12 Score=32.19 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=48.1
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+..+|.-|.++|......|.+++++...+.+ +...+.++.+|.++..+ + .+.++..+...++.++.+
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45788888999999999999999988776544322 22345666788777654 4 455555555666655543
No 107
>PRK06182 short chain dehydrogenase; Validated
Probab=78.84 E-value=21 Score=31.07 Aligned_cols=68 Identities=13% Similarity=0.022 Sum_probs=46.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|.-|.++|......|.+++++... ..+++.+...+.+.+.++ .+.++..+..+++.++.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 346788888999999999988899988776543 344555555677777776 45555555555555543
No 108
>PRK08643 acetoin reductase; Validated
Probab=78.78 E-value=22 Score=30.40 Aligned_cols=70 Identities=10% Similarity=-0.014 Sum_probs=41.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH-HHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI-MKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.++|......|.+++++....... .....++..|.++..+. .+.+...+...++.++
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDT 76 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3467888889999999999889999876665432211 12233455566665543 3334444444444443
No 109
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.54 E-value=48 Score=32.56 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=40.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD 123 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 123 (269)
+++++....|+.|+.+|..-+..|.+++++=. ++.+.+.++.+|.+++.-+..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC
Confidence 46889999999999999999999998766543 345667777777777666543
No 110
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=77.74 E-value=6.1 Score=32.23 Aligned_cols=62 Identities=15% Similarity=0.280 Sum_probs=43.4
Q ss_pred CChHHHHHHHHHHhcCCCeEEEEcCC--CcH--HHH----HHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecC
Q psy5622 76 LGNHAQAMCYHGSRLNIPVTVVMPIV--API--MKI----QACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145 (269)
Q Consensus 76 sGN~g~alA~~a~~~G~~~~ivvp~~--~~~--~~~----~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 145 (269)
-+|.+.|++..++++|+.++++.|++ .++ ..+ +..+..|.++..+ .+.+++. +..+-.|...
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-~~~~e~l-------~~aDvvy~~~ 81 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT-DDIEEAL-------KGADVVYTDR 81 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE-SSHHHHH-------TT-SEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE-eCHHHhc-------CCCCEEEEcC
Confidence 38999999999999999999999998 455 222 2345568999888 4555543 3345566555
No 111
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=77.30 E-value=20 Score=30.38 Aligned_cols=54 Identities=9% Similarity=0.018 Sum_probs=36.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 121 (269)
...+|+..+|..|.+++......|.+++++.....+ ......++..+.++..+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 346788889999999999988889987776543211 223344556666665443
No 112
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=76.88 E-value=25 Score=30.23 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=46.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|.-|.++|......|.+++++- ........+.++..+.++..+. .+.++..+..++..++.
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGIN-IVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEec-CcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4568889999999999999999999877652 2333444556666777766543 44555555555554443
No 113
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=76.78 E-value=66 Score=32.08 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=42.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHH
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKE 126 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~ 126 (269)
..+++....|..|+.+|..-...|++++++=. ++.+.+.++.+|.+++.-+.+..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~~~~g~~v~~GDat~~~ 455 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLER---DISAVNLMRKYGYKVYYGDATQLE 455 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHHhCCCeEEEeeCCCHH
Confidence 46789899999999999999999999866543 356777788888887766654333
No 114
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=76.72 E-value=19 Score=32.21 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=37.0
Q ss_pred CccE-EEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 68 KKGV-ISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~v-v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.++| |...+|-.|.+++..|+..|.++++..+ ++.|.+.++.+|++.+..
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4455 4455789999999999999998665544 456788888999966543
No 115
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=76.44 E-value=67 Score=31.14 Aligned_cols=129 Identities=15% Similarity=0.089 Sum_probs=73.8
Q ss_pred HHHHHHhcCCCeEEEE-----------cCCCcHHHHHHHHHcCCEEEEeC------CCHHHHHHHHHHHHhhhCCeeecC
Q psy5622 83 MCYHGSRLNIPVTVVM-----------PIVAPIMKIQACRRYGATVIVEG------ADMKEAKNIALKKGAELGLTYING 145 (269)
Q Consensus 83 lA~~a~~~G~~~~ivv-----------p~~~~~~~~~~l~~~Ga~v~~~~------~~~~~~~~~a~~~~~~~~~~~~~~ 145 (269)
+..+|+..|.++++.. |..+...........|++.+... ...-++++...+++++...++...
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 3457899999988865 33445556666667899998764 344577777777665433211000
Q ss_pred -CCCCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh
Q psy5622 146 -YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA 224 (269)
Q Consensus 146 -~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~ 224 (269)
.+..... ..............-+.++.+.+ +.++||+..-+|.++.-++ .+ .|.++|+++.|....
T Consensus 342 ~~~~~~~~-~~~~~~~~~~~ia~~a~~~a~~~-~akaIVv~T~SG~TA~~vS----r~-------rp~~PIiAvT~~~~v 408 (473)
T TIGR01064 342 TNFNDRKN-SDPKPSTITEAIALSAVEAAEKL-DAKAIVVLTESGRTARLLS----KY-------RPNAPIIAVTPNERV 408 (473)
T ss_pred hhhhhhhc-ccccCCChHHHHHHHHHHHHhhc-CCCEEEEEcCChHHHHHHH----hh-------CCCCCEEEEcCCHHH
Confidence 0000000 00000011122223334444444 4789999999999866554 34 788999999987643
No 116
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=75.57 E-value=24 Score=30.37 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=46.9
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
++..+|+..+|.-|.++|..-...|.+++++......+...+.+...|.++..+ + .+.++..+...+..++.+
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 355688888899999999998889999888765422222333455567666544 4 444555555555555443
No 117
>PRK08589 short chain dehydrogenase; Validated
Probab=75.53 E-value=19 Score=31.36 Aligned_cols=72 Identities=18% Similarity=0.119 Sum_probs=46.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|--|.++|......|.+++++-...........++..|.++..+ + .+.++......++.++.+
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 45678888888999999998889998887755421122344555667666544 4 444555555566555544
No 118
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=75.50 E-value=24 Score=30.34 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=47.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..++--|.++|....+.|.+++++-... .+.....++..|.++..+ + .+.++..+...+..++.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 4568888889999999999999999987764332 233344566678777544 4 455555555555555544
No 119
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=75.42 E-value=76 Score=30.40 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=40.9
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-HHcCCEEEEeC-CCHHHHHHHH
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-RRYGATVIVEG-ADMKEAKNIA 131 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~Ga~v~~~~-~~~~~~~~~a 131 (269)
+.+.++.++.+....+++.+...+|+++..+......+.....+ ..++.+++++. .+..+..+..
T Consensus 325 ~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~~~d~~e~~~~i 391 (456)
T TIGR01283 325 KGKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLDDANPRELLKLL 391 (456)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEeCCCHHHHHHHH
Confidence 45667778888999999999999999988775433333323333 33454454443 5655554433
No 120
>PRK05993 short chain dehydrogenase; Provisional
Probab=75.37 E-value=28 Score=30.40 Aligned_cols=66 Identities=8% Similarity=-0.110 Sum_probs=45.1
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~ 137 (269)
..+|+..+|..|.++|......|.+++++... +.++..+...|.+.+.++ .+.++..+...+..++
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 72 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYAEPESIAALVAQVLEL 72 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888999999999988899987776543 344555666677777666 4544444444544443
No 121
>PRK08628 short chain dehydrogenase; Provisional
Probab=75.16 E-value=25 Score=30.16 Aligned_cols=70 Identities=7% Similarity=-0.039 Sum_probs=45.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA---DMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|-.|.++|..-...|.+++++..........+.++..|.++..+.. +.++..+...++.+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 3567888888999999999989999987776443322334556667877765543 333434444444443
No 122
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=75.07 E-value=11 Score=28.73 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 80 AQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 80 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
|......|+.+|.+++++.+ ++.|++.++.+||+.+..
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~ 40 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVID 40 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhccccccc
Confidence 44555566666733333332 455666666666555443
No 123
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=74.93 E-value=29 Score=29.66 Aligned_cols=70 Identities=9% Similarity=0.024 Sum_probs=42.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.++|....+.|.+++++...... +.....++..+.++..+ + .+.++..+...++.++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 456888999999999999998999877765432111 11223445456666544 3 3444444444444444
No 124
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=74.84 E-value=75 Score=30.72 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=39.0
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-HHcCCEEEEeC-CCHHHHHH
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-RRYGATVIVEG-ADMKEAKN 129 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~Ga~v~~~~-~~~~~~~~ 129 (269)
..+.++.++.+....+++.+...+|+++..+......+...+.+ ..++..++.++ .+..+..+
T Consensus 323 ~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~d~~~~e~~~ 387 (475)
T PRK14478 323 EGKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMIDDANPRELYK 387 (475)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEEeCCCHHHHHH
Confidence 45667778888899999999999999998876554333322233 22443444443 34444433
No 125
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=74.62 E-value=65 Score=30.41 Aligned_cols=137 Identities=17% Similarity=0.103 Sum_probs=70.9
Q ss_pred EEEeCCC-hHHHHHHHHHHhcCCCeEEEEcC-CCc----HHHHHHHHHcCC-EEEEeCCCHHHHHHHHHHHHhhhCCeee
Q psy5622 71 VISASLG-NHAQAMCYHGSRLNIPVTVVMPI-VAP----IMKIQACRRYGA-TVIVEGADMKEAKNIALKKGAELGLTYI 143 (269)
Q Consensus 71 vv~~SsG-N~g~alA~~a~~~G~~~~ivvp~-~~~----~~~~~~l~~~Ga-~v~~~~~~~~~~~~~a~~~~~~~~~~~~ 143 (269)
|+.+|+| .+...+.+...+.+++++.|.-+ +-+ +.-.+....+|| +++.++..-.-+.+.+...-+. +..|-
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~a-nA~Ye 79 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKA-NALYE 79 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHT-T--BT
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHH-HHHhC
Confidence 4567777 56667777777777999988732 222 223344567899 9988885322222222222221 23333
Q ss_pred cCCCCCCccccCCCCcchhccchhHHHHHHhhcC--CCCEEEE-ecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcC
Q psy5622 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA--NIDAIVV-PVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVES 220 (269)
Q Consensus 144 ~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~--~~d~vv~-p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~ 220 (269)
+. |-.- .....--|+..+++-.. ..++|.- +.|-|.-..=.-.+++.+ +|..++++ |
T Consensus 80 g~----------YpL~-tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al-------~P~l~via--P 139 (388)
T PF00764_consen 80 GR----------YPLS-TSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIRAL-------APELKVIA--P 139 (388)
T ss_dssp TT----------B--C-CCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHHHH-------STTSEEE---G
T ss_pred CC----------cccc-ccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHHHh-------CcCCcEec--c
Confidence 32 1100 01122233433333322 4677766 447788888888889988 99999887 6
Q ss_pred CCChHHHH
Q psy5622 221 DRCASFST 228 (269)
Q Consensus 221 ~~~~~~~~ 228 (269)
-.-..|.+
T Consensus 140 ~Rd~~~~R 147 (388)
T PF00764_consen 140 WRDWEFSR 147 (388)
T ss_dssp GGHHHHHH
T ss_pred cchhhhhH
Confidence 66555544
No 126
>PRK07324 transaminase; Validated
Probab=74.00 E-value=40 Score=31.09 Aligned_cols=71 Identities=14% Similarity=0.030 Sum_probs=39.6
Q ss_pred CCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 47 TGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 47 tGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|.-..|-+..-.. ..-....|+..+++..+..++..+- ++-.-.|+++...-..-...++.+|++++.++
T Consensus 62 ~G~~~lr~~ia~~~---~~~~~~~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~ 132 (373)
T PRK07324 62 EGSPEFKEAVASLY---QNVKPENILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQ 132 (373)
T ss_pred CCCHHHHHHHHHHh---cCCChhhEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEe
Confidence 46655555443321 1112345776677677766665543 23223445554444444567788999998876
No 127
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=73.70 E-value=40 Score=28.53 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=34.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 121 (269)
+..+|+..+|.-|.+++......|.+++++...... ......++..+.++..+.
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 58 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFA 58 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 345788889999999999988889987776543211 111223444565555443
No 128
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=73.55 E-value=26 Score=31.05 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=36.9
Q ss_pred CccE-EEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 68 KKGV-ISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~v-v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.+++ |...+|..|.++...|+.+|.+++++.+ ++.+.+.++.+|++-+..
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVFN 194 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 3455 5555799999999999999998655443 456888888899865543
No 129
>PRK07550 hypothetical protein; Provisional
Probab=73.49 E-value=50 Score=30.44 Aligned_cols=75 Identities=15% Similarity=-0.087 Sum_probs=43.1
Q ss_pred CCchhhHHHHHHHHhchH--hcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 47 TGSFKERGACYALLMLSE--DQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 47 tGS~K~R~a~~~l~~~~~--~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
.|.-..|.+..-...... ......|+..+++..+..++..+- .+-.-.|++|...-..-...++..|++++.++.
T Consensus 67 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 67 EGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 476666655432211100 112345776777777766655443 344456777765544455677889999998763
No 130
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=73.38 E-value=13 Score=31.68 Aligned_cols=64 Identities=14% Similarity=0.049 Sum_probs=44.3
Q ss_pred CCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhh
Q psy5622 75 SLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 75 SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~ 138 (269)
+++.-|.++|....+.|.++++.-..... ....+..+.+|.+++.++ .+.++..+...+..++.
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 70 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERF 70 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhc
Confidence 45778999999999999998887654432 123344556899987777 45556566666666665
No 131
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=72.93 E-value=43 Score=30.97 Aligned_cols=52 Identities=17% Similarity=-0.033 Sum_probs=33.0
Q ss_pred cEEEeCCChHHHHHHHHHH-hcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGS-RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~-~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|+..+++..+..++..+- .-|=...|++|.-.-..-....+.+|++++.++
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~ 144 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLN 144 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEee
Confidence 4666677777666555432 235445677776544444556788999998775
No 132
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=72.91 E-value=25 Score=28.96 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=45.2
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC-----CcHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIV-----APIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-----~~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~ 138 (269)
-+|+...|..|..+|..-...+-+-++++... .....++.++..|++|.... .+.++..+...++.++.
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 46778889999999998666665555555433 33457888999999998765 45555555555544443
No 133
>PRK07109 short chain dehydrogenase; Provisional
Probab=72.83 E-value=21 Score=32.45 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=47.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|--|.++|....+.|.+++++..... -+...+.++..|++++.+. .+.++..+.+.+..++.+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 35688888899999999999999998777664321 1223445667788886554 344555555555555444
No 134
>PRK12828 short chain dehydrogenase; Provisional
Probab=72.82 E-value=28 Score=29.07 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=45.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+.++|--|.+++....+.|.+++++.....+ ......+...+.+++..+ .+..+..+..++..++.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQF 80 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 456788889999999999888889997766653321 223344556677777766 45555444444444443
No 135
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=72.73 E-value=38 Score=29.95 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=36.7
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
.+|...+|..|.+++..|+.+|.+.+++.. ++.+.+.++.+|++.+....
T Consensus 144 vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~~~ 193 (334)
T PTZ00354 144 VLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIRYP 193 (334)
T ss_pred EEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEecC
Confidence 345566899999999999999998765433 45667777889996555443
No 136
>PRK08278 short chain dehydrogenase; Provisional
Probab=72.66 E-value=35 Score=29.79 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=43.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--------HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--------IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGA 136 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~ 136 (269)
+..+|+..+|--|.++|......|.+++++.....+ ..-.+.++..|.+++.+. .+.++..+...+..+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 86 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKAVE 86 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 356788888999999999999999988777644321 111234556777776543 333444444444433
Q ss_pred h
Q psy5622 137 E 137 (269)
Q Consensus 137 ~ 137 (269)
+
T Consensus 87 ~ 87 (273)
T PRK08278 87 R 87 (273)
T ss_pred H
Confidence 3
No 137
>PRK08226 short chain dehydrogenase; Provisional
Probab=72.40 E-value=25 Score=30.20 Aligned_cols=71 Identities=8% Similarity=-0.027 Sum_probs=43.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+ + .+..+..+...++.++.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45688888999999999998889998766644322122333444456666543 3 34445444445544443
No 138
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.16 E-value=42 Score=28.35 Aligned_cols=54 Identities=15% Similarity=0.053 Sum_probs=35.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~ 121 (269)
...+|+..+|..|.+++......|.+++++..... .+...+.++..|+++..+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 35678888899999999998889998666543321 1223344555677765443
No 139
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=71.90 E-value=60 Score=27.41 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=28.2
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEE
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATV 117 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 117 (269)
++...++ .|.+++..++..|.+++++.+. +.+.+.++.+|++.
T Consensus 139 li~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 181 (271)
T cd05188 139 LVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADH 181 (271)
T ss_pred EEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCce
Confidence 4444445 8999999999999776655443 34555666666543
No 140
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=71.57 E-value=33 Score=29.07 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=44.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|.-|.++|......|.+++++.... .......++.++.++..+. .+.++..+..++..++.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4567888888999999999999999877765432 2333455666776665443 34445444445544443
No 141
>PRK05650 short chain dehydrogenase; Provisional
Probab=71.36 E-value=42 Score=29.07 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=34.1
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 121 (269)
.+|+..+|..|.+++......|.+++++...... +.....++..|.++..+.
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQR 55 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 4788888999999999988889987776543211 122334555566665443
No 142
>PRK06483 dihydromonapterin reductase; Provisional
Probab=71.32 E-value=39 Score=28.45 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=46.0
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+..+|--|.++|......|.+++++-.... ...+.++..|+..+.++ .+.++..+...++.++.+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 73 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY--PAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTD 73 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--hHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCC
Confidence 4578888899999999998889998877654322 22445566787777666 455555555555554433
No 143
>PRK09242 tropinone reductase; Provisional
Probab=70.96 E-value=51 Score=28.16 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=26.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
+..+|+..+|.-|.+++......|.+++++..
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r 41 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVAR 41 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45678888899999999999889998766654
No 144
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.93 E-value=46 Score=28.47 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=46.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|--|.++|......|.+++++.... +.+.+.++..+...+.++ .+.++..+...++.++.+
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFG 78 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4567888889999999999888999877654332 334445555566666666 555555555555555443
No 145
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=70.80 E-value=30 Score=31.39 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=36.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.++|+....|..|.+++.+|+.+|.+++++ +.++.|++.++.+|++.++.
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 455666555999999999999999974443 23566788888899976543
No 146
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=70.54 E-value=31 Score=24.11 Aligned_cols=49 Identities=16% Similarity=0.055 Sum_probs=36.9
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-----cH----HHHHHHHHcCCEEEE
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-----PI----MKIQACRRYGATVIV 119 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-----~~----~~~~~l~~~Ga~v~~ 119 (269)
++.-.+|..|.-+|.+.+.+|.+++++...+. ++ .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 56678999999999999999999999986642 12 234456677777763
No 147
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=70.49 E-value=6.8 Score=31.67 Aligned_cols=39 Identities=15% Similarity=0.022 Sum_probs=31.3
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHH
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRR 112 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~ 112 (269)
|..-.+||+|.|+|...+..|.+++++.++. ...+.++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~ 40 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINE 40 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHH
Confidence 5567899999999999999999999998754 44445544
No 148
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=70.40 E-value=16 Score=29.52 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=35.2
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
+|...+|+.|..++......|.++++++....+... .-+.+++..+
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESC
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceee
Confidence 567889999999999999999999999986543333 4555655554
No 149
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=70.33 E-value=29 Score=30.97 Aligned_cols=71 Identities=11% Similarity=0.070 Sum_probs=46.5
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
+...+|+..|+.-|.++|...++.|++++++...... .-..+.-+.+|.+|...+ .+.++..+...++..+
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 3456888888888999999999999999998875421 222223334677775554 4445555555555444
No 150
>PRK12937 short chain dehydrogenase; Provisional
Probab=70.22 E-value=38 Score=28.53 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=46.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|..|.++|....+.|.+++++.....+ ....+.++.++.++..+. .+.++..+..++..++.
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 456888889999999999999999988776543322 223345666788877654 34444444445544443
No 151
>PRK08017 oxidoreductase; Provisional
Probab=69.41 E-value=43 Score=28.48 Aligned_cols=63 Identities=13% Similarity=0.007 Sum_probs=42.2
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHH
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKK 134 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~ 134 (269)
..+|+..+|.-|.+++......|.+++++... ..+.+.++..|++.+.++ .+.++..+...+.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i 67 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDLDDPESVERAADEV 67 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeecCCHHHHHHHHHHH
Confidence 35778888999999999988889987665442 345555666787777766 4444444433333
No 152
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=69.38 E-value=37 Score=30.56 Aligned_cols=47 Identities=15% Similarity=-0.012 Sum_probs=35.0
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHH-cCCEEEE
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRR-YGATVIV 119 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga~v~~ 119 (269)
.+|.+.+|..|.++.-.|+.+|.++++..+ ++.|.+.++. +|++-+.
T Consensus 155 VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 155 VFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred EEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 355566699999999999999998555443 3567777877 9986544
No 153
>PRK05693 short chain dehydrogenase; Provisional
Probab=69.30 E-value=48 Score=28.76 Aligned_cols=67 Identities=15% Similarity=0.012 Sum_probs=44.7
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~ 138 (269)
..+|+..+|-.|.+++......|.+++++... ..+.+.+...+.+.+.++ .+.++..+...++.++.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 70 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEH 70 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 35788888999999999998999987776542 334555555677766666 45555555555554443
No 154
>PRK07832 short chain dehydrogenase; Provisional
Probab=69.19 E-value=39 Score=29.34 Aligned_cols=30 Identities=3% Similarity=-0.023 Sum_probs=24.5
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
.+|+..+|..|.+++......|.+++++..
T Consensus 3 vlItGas~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 3 CFVTGAASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 578888899999999998899988666543
No 155
>PRK07478 short chain dehydrogenase; Provisional
Probab=69.08 E-value=45 Score=28.48 Aligned_cols=72 Identities=18% Similarity=0.091 Sum_probs=44.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.+++++.....+ +.-...++..|.++..+. .+.++..+...++.++.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 456788888999999999988899987776543211 112234555676665443 344555555555555443
No 156
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=68.93 E-value=17 Score=33.50 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=44.2
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
+...++..+||..|.-+|+.+..++-.-.|++|.-+...-...+...|++++.++
T Consensus 39 g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~D 93 (363)
T PF01041_consen 39 GVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVD 93 (363)
T ss_dssp TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-
T ss_pred CCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEe
Confidence 4678899999999988888885555558889999888888999999999999987
No 157
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.81 E-value=43 Score=28.51 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=44.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHHH
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEGA---DMKEAKNIALKKG 135 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~~ 135 (269)
+..+|+..+|..|.+++......|.+++++..... ...-.+.++..|.++..+.. +.+...+...+..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHH
Confidence 45688899999999999999999998776654332 12334456667888765543 3343333444433
No 158
>PRK06348 aspartate aminotransferase; Provisional
Probab=68.73 E-value=64 Score=29.77 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=34.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
...|+..+++.+|..++..+- .+-.-.|+++...-..-...++.+|++++.++
T Consensus 89 ~~~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 89 RNEIMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred hhhEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 345777777787776665543 22223566666554555667888899998775
No 159
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=68.68 E-value=34 Score=33.51 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=39.6
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.+++.-..|..|.+.+..++.+|..++++- ....++++.+.+|++.+.++
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d---~~~~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFD---TRPEVKEQVQSMGAEFLELD 214 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHcCCeEEecc
Confidence 467778899999999999999998744442 24557888889999987665
No 160
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=68.62 E-value=24 Score=31.00 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=9.8
Q ss_pred hHHHHHHhHHHHHHh
Q psy5622 190 GLIAGVAYDHPDIMA 204 (269)
Q Consensus 190 g~~~Gi~~~~k~~~~ 204 (269)
-++..+++.++.+..
T Consensus 121 YS~~~lak~a~~lM~ 135 (259)
T COG0623 121 YSFTALAKAARPLMN 135 (259)
T ss_pred hhHHHHHHHHHHhcC
Confidence 456677777777653
No 161
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=68.56 E-value=34 Score=29.52 Aligned_cols=71 Identities=11% Similarity=0.000 Sum_probs=45.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|..|.++|......|.+++++-..... ......++..|.++..+ + .+..+..+...+..++.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 457888999999999999999999987766332211 12234455667777654 3 44455555555554443
No 162
>PRK07478 short chain dehydrogenase; Provisional
Probab=68.51 E-value=30 Score=29.60 Aligned_cols=11 Identities=9% Similarity=-0.058 Sum_probs=8.0
Q ss_pred CcEEEEEcCCC
Q psy5622 212 EIVDQGVESDR 222 (269)
Q Consensus 212 ~~~vigVe~~~ 222 (269)
.+++..|.|-.
T Consensus 179 gi~v~~v~PG~ 189 (254)
T PRK07478 179 GIRVNALLPGG 189 (254)
T ss_pred CEEEEEEeeCc
Confidence 57888887754
No 163
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.39 E-value=27 Score=30.05 Aligned_cols=71 Identities=10% Similarity=-0.094 Sum_probs=39.4
Q ss_pred ccEEEeCC--ChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISASL--GNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+..+ +.-|.++|....+.|.++++.-.........+.+....+..+.++ .+.++..+..+++.++.+
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 45666655 678999999999999997766432111111222221123334455 455555555555555544
No 164
>PRK06114 short chain dehydrogenase; Provisional
Probab=68.02 E-value=51 Score=28.18 Aligned_cols=71 Identities=10% Similarity=0.051 Sum_probs=44.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|--|.++|......|.++++....... +...+.++..|.++..+ + .+.++..+...+..++.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 456888888889999999988899988876643321 22344566667666544 3 34444444444444443
No 165
>PRK08303 short chain dehydrogenase; Provisional
Probab=67.97 E-value=41 Score=30.20 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=46.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-----------cHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHH
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-----------PIMKIQACRRYGATVIVE--G-ADMKEAKNIALK 133 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-----------~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~ 133 (269)
+..+|+..++--|.++|......|.+++++-.... -....+.++..|.+++.+ + .+.++..+...+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 45577887788899999998889998777654311 112334566677766544 4 456666666666
Q ss_pred HHhhhC
Q psy5622 134 KGAELG 139 (269)
Q Consensus 134 ~~~~~~ 139 (269)
..++.+
T Consensus 89 ~~~~~g 94 (305)
T PRK08303 89 IDREQG 94 (305)
T ss_pred HHHHcC
Confidence 666554
No 166
>PRK07201 short chain dehydrogenase; Provisional
Probab=67.96 E-value=38 Score=33.60 Aligned_cols=71 Identities=15% Similarity=0.037 Sum_probs=42.3
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+..+|..|.+++..-.+.|.+++++...... ......++..|.++..+. .+.++..+...+..++.+
T Consensus 373 ~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 373 VVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 35778888899999998888889887776543211 122234455566665443 344444444444444443
No 167
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=67.94 E-value=25 Score=31.76 Aligned_cols=49 Identities=12% Similarity=-0.020 Sum_probs=35.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++++....|..|.+++..|+.+|.+++++.+ ++.|++.++.+||+.+.
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 44555555688898888899999987544433 35678889999997654
No 168
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.92 E-value=43 Score=31.65 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=46.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|.-|.++|....+.|.+++++-.+...+...+.....+++.+.++ .+.++..+...+..++.
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 282 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERH 282 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhC
Confidence 345788888999999999999999997776543333333334445777777777 45555444444444443
No 169
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=67.79 E-value=39 Score=28.88 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=43.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.++|......|.+++++...... +.....++..|.++..+. .+.++..+...+..++
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 456888889999999999998899987665432211 122334555677776553 3444444444444443
No 170
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=67.63 E-value=26 Score=31.79 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=34.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCC-CeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNI-PVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++|+...+|..|.+++..|+.+|. +++++.+ ++.+...++.+|++-+.
T Consensus 178 g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~---~~~~~~~~~~~g~~~vi 227 (361)
T cd08231 178 GDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG---SPERLELAREFGADATI 227 (361)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCCeEE
Confidence 4444444579999999999999999 5444422 45677778889985443
No 171
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=67.56 E-value=44 Score=30.00 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=36.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCC-eEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIP-VTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.++++....|-.|.+++..|+.+|.+ +++ +. .++.|++.++.+|++.+...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~-~~--~~~~~~~~~~~~ga~~~i~~ 215 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIG-VD--PSPERLELAKALGADFVINS 215 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEE-EC--CCHHHHHHHHHhCCCEEEcC
Confidence 44555445689999999999999998 443 32 24567788889999665433
No 172
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=67.54 E-value=44 Score=30.55 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=36.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.++|+...+|..|.+++..|+.+|...++.+.. ++.+++.++.+|++.+..
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i~ 238 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFVN 238 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEEc
Confidence 455555567999999999999999843333322 356788889999975543
No 173
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.03 E-value=48 Score=29.04 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=41.6
Q ss_pred ccEEEeCC--ChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-HHcCCE-EEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISASL--GNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-RRYGAT-VIVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~Ga~-v~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+..+ +--|.++|....+.|.++++.-.......+++.+ +.+|.. .+.++ .+.++..+...++.++.+
T Consensus 12 ~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 87 (272)
T PRK08159 12 RGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWG 87 (272)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcC
Confidence 45666554 5789999999999999876653322223344444 334532 33445 566666666666655544
No 174
>PRK06128 oxidoreductase; Provisional
Probab=67.00 E-value=54 Score=29.04 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=47.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC-C--cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV-A--PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~--~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|--|.++|....+.|.++++..... . .......++..|.+++.+. .+.++..+...+..++.+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 133 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG 133 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence 4578888889999999999999999987754322 1 1233455667788776554 344455555555555443
No 175
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.79 E-value=50 Score=28.08 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=45.1
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+..+|.-|.+++......|.+++++.....+ ......++..+.++..+. .+.++..+...++.++.+
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWG 79 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 45788899999999999988889988776643322 223444555676665543 344455555555554433
No 176
>PRK12744 short chain dehydrogenase; Provisional
Probab=66.71 E-value=43 Score=28.67 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=44.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC--C---cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV--A---PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~--~---~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|.-|.++|......|.+++++.... . .+...+.++..+.++..+. .+.++..+...+..++.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 87 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAAF 87 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHhh
Confidence 4567888888999999999888999977665321 1 1122344556677775543 34455555555554443
No 177
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=66.64 E-value=45 Score=30.54 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=36.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.++++...+|..|.+++..|+.+|.+.++.+. .++.|++.++.+|++.++.
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i~ 237 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCVN 237 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEEc
Confidence 45555556799999999999999985344332 2456777888899976543
No 178
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=66.62 E-value=26 Score=26.54 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=39.7
Q ss_pred HHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCC-eeecCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEe
Q psy5622 107 IQACRRYGATVIVEGADMKEAKNIALKKGAELGL-TYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVP 185 (269)
Q Consensus 107 ~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p 185 (269)
.+..+.+|++|+.++.+.. .. +++++.|. .+++. ++....+-.+.+... ..+|.+|-+
T Consensus 7 ~q~ak~~G~~vi~~~~~~~-k~----~~~~~~Ga~~~~~~-----------~~~~~~~~i~~~~~~-----~~~d~vid~ 65 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDRSEE-KL----ELAKELGADHVIDY-----------SDDDFVEQIRELTGG-----RGVDVVIDC 65 (130)
T ss_dssp HHHHHHTTSEEEEEESSHH-HH----HHHHHTTESEEEET-----------TTSSHHHHHHHHTTT-----SSEEEEEES
T ss_pred HHHHHHcCCEEEEEECCHH-HH----HHHHhhcccccccc-----------ccccccccccccccc-----ccceEEEEe
Confidence 4567889999988876532 22 34555553 33333 333222222222222 347999999
Q ss_pred cCcchHHHHHHhHH
Q psy5622 186 VGGGGLIAGVAYDH 199 (269)
Q Consensus 186 ~G~Gg~~~Gi~~~~ 199 (269)
+|++.++.-....+
T Consensus 66 ~g~~~~~~~~~~~l 79 (130)
T PF00107_consen 66 VGSGDTLQEAIKLL 79 (130)
T ss_dssp SSSHHHHHHHHHHE
T ss_pred cCcHHHHHHHHHHh
Confidence 99877665444333
No 179
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=66.48 E-value=54 Score=27.45 Aligned_cols=69 Identities=9% Similarity=0.062 Sum_probs=43.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHHHh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEGA---DMKEAKNIALKKGA 136 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~~~ 136 (269)
+..+|+..+|..|.+++....+.|.+++++.....+ ......++..+.++..+.. +.++..+..++..+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 356888899999999999988889987666644322 2223445556777776643 33333333444443
No 180
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=66.33 E-value=57 Score=27.83 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=25.8
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
..+|+..+|.-|.++|......|.+++++-.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 4688899999999999998888998776654
No 181
>PRK08862 short chain dehydrogenase; Provisional
Probab=66.32 E-value=37 Score=28.92 Aligned_cols=72 Identities=8% Similarity=0.034 Sum_probs=45.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..++.-|.++|......|.+++++-..... +...+.++..|.+++.+ + .+.++..+...+..++.+
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 345777778888999999999999987665432211 12234466667777644 3 455555555566555544
No 182
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=66.26 E-value=40 Score=28.78 Aligned_cols=65 Identities=8% Similarity=0.048 Sum_probs=40.2
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-HHcCCEEEE--eC-CCHHHHHHHHHHHHhh
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-RRYGATVIV--EG-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~Ga~v~~--~~-~~~~~~~~~a~~~~~~ 137 (269)
.+|+..+|..|.++|......|.+++++... +.+...+ ...+.++.. ++ .+.++..+...++.+.
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4788889999999999999999987765432 2233322 234555544 44 4444544444554443
No 183
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=66.17 E-value=1.1e+02 Score=28.15 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=43.3
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHH-cCCEEEEeCC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRR-YGATVIVEGA 122 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga~v~~~~~ 122 (269)
.+++....|.-|...+..++.+|...+|++ +.++.|++..+. .|++++..+.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 379999999999999999999999988888 556788888877 7888776654
No 184
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=66.16 E-value=60 Score=29.03 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=34.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI 118 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 118 (269)
.++|+...+|..|.+++.+|+.+|+..++++ ..++.+...++.+|+.++
T Consensus 168 ~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~~ 216 (344)
T cd08284 168 GDTVAVIGCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEPI 216 (344)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeEE
Confidence 3454444679999999999999998434444 334567777888998753
No 185
>PRK08862 short chain dehydrogenase; Provisional
Probab=65.92 E-value=54 Score=27.90 Aligned_cols=82 Identities=16% Similarity=0.015 Sum_probs=48.5
Q ss_pred eEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCC--eeecCCCCCCccccCCCCcchhccchhHH
Q psy5622 94 VTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGL--TYINGYLSSGLSVLGYDHPDIMAGQGTVG 169 (269)
Q Consensus 94 ~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~g~~n~~~~~g~~t~~ 169 (269)
.+++... +.-..-.+.+...|++|+.+..+.+...+..+++.+.... .|.-+ -.++ +....+.
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D----------~~~~---~~~~~~~ 73 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLK----------DFSQ---ESIRHLF 73 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEcc----------CCCH---HHHHHHH
Confidence 4444433 2334556667778999999876655444444444332222 22111 1233 3456677
Q ss_pred HHHHhhcC-CCCEEEEecCc
Q psy5622 170 LEIVDQVA-NIDAIVVPVGG 188 (269)
Q Consensus 170 ~EI~~ql~-~~d~vv~p~G~ 188 (269)
.++.++++ .+|.+|..+|.
T Consensus 74 ~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 74 DAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHhCCCCCEEEECCcc
Confidence 88888888 89999999874
No 186
>PRK06836 aspartate aminotransferase; Provisional
Probab=65.89 E-value=79 Score=29.30 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=32.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
...|+..++++.+..++..+- ..-.-.|+++...-..-...++.+|++++.++.
T Consensus 96 ~~~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~ 149 (394)
T PRK06836 96 ADHIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT 149 (394)
T ss_pred cCcEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec
Confidence 345776666677665554332 222334555554434445667889999998763
No 187
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=65.86 E-value=50 Score=27.88 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=41.8
Q ss_pred HHHHHHHHhchHh------cCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHH-HcCCEEE
Q psy5622 53 RGACYALLMLSED------QKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACR-RYGATVI 118 (269)
Q Consensus 53 R~a~~~l~~~~~~------~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~-~~Ga~v~ 118 (269)
||..+.+..+.+. .+.++++.-..||.|..+|......|.++++ .. .++.+...+. .+|++.+
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv-~D--~~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIV-AD--INEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-Ec--CCHHHHHHHHHHcCCEEE
Confidence 5666666655443 2346788888899999999999999998774 33 2344444443 4577654
No 188
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=65.86 E-value=48 Score=23.95 Aligned_cols=75 Identities=20% Similarity=0.145 Sum_probs=47.2
Q ss_pred CCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHH--HHHhcCCCeEEEEcCCCcHHHHHHHHHc-CCEEEEeCC
Q psy5622 47 TGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY--HGSRLNIPVTVVMPIVAPIMKIQACRRY-GATVIVEGA 122 (269)
Q Consensus 47 tGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~--~a~~~G~~~~ivvp~~~~~~~~~~l~~~-Ga~v~~~~~ 122 (269)
.|....-.+..+..++......+.++.+++-++.-+|+. +|.+.+.+..++- ...+..-...++.+ ..+|+.+++
T Consensus 4 ~G~dRyeTs~~va~~~~~~~~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~iiGg 81 (92)
T PF04122_consen 4 SGADRYETSAKVAKKFYPDNKSDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYIIGG 81 (92)
T ss_pred CCCCHHHHHHHHHHHhcccCCCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEEECC
Confidence 354444445555554332335667777777666555554 5677788766655 77788878888877 456777764
No 189
>KOG1205|consensus
Probab=65.68 E-value=66 Score=28.98 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=52.9
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHH-HHHHHcCC-E-EEEeC---CCHHHHHHHHHHHHhhhC-
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKI-QACRRYGA-T-VIVEG---ADMKEAKNIALKKGAELG- 139 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~-~~l~~~Ga-~-v~~~~---~~~~~~~~~a~~~~~~~~- 139 (269)
++.-+|+..|+--|.++|+.-.+.|.+.++++.......++ +.++..++ + ++... .+.+++.+...+.-++.|
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~ 91 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFGR 91 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcCC
Confidence 34557776666668999999999999999999776555555 66665553 3 55443 466677766666666665
Q ss_pred -CeeecC
Q psy5622 140 -LTYING 145 (269)
Q Consensus 140 -~~~~~~ 145 (269)
.+.+|.
T Consensus 92 vDvLVNN 98 (282)
T KOG1205|consen 92 VDVLVNN 98 (282)
T ss_pred CCEEEec
Confidence 344444
No 190
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=65.50 E-value=46 Score=30.57 Aligned_cols=51 Identities=14% Similarity=-0.120 Sum_probs=29.3
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|+..+++..+..++..+- ..-.-.|+++.-.-..-....+.+|++++.++
T Consensus 93 ~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~ 143 (383)
T TIGR03540 93 EVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMP 143 (383)
T ss_pred eEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEe
Confidence 3555556666665554432 22223455555443344456788999998775
No 191
>PRK05867 short chain dehydrogenase; Provisional
Probab=65.32 E-value=50 Score=28.22 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=44.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.+++++-..... +...+.++..|.++..+ + .+.++..+...++.++.+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 456788888999999999988999987665432211 12233455567666544 3 344555555555555443
No 192
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=65.22 E-value=48 Score=30.24 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=35.5
Q ss_pred CccE-EEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHH-HcCCEEEEe
Q psy5622 68 KKGV-ISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACR-RYGATVIVE 120 (269)
Q Consensus 68 ~~~v-v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~-~~Ga~v~~~ 120 (269)
.++| |.+.+|..|.++...|+.+|.++++..+ ++.|.+.++ .+|++-+.-
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~---~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG---SSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhcCCCEEEE
Confidence 3454 5566699999999999999987554332 456777776 699976553
No 193
>PRK06841 short chain dehydrogenase; Provisional
Probab=65.16 E-value=46 Score=28.34 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=39.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCE--EEEeC-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGAT--VIVEG-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~--v~~~~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|--|.++|......|.+++++............+ .+.+ .+.++ .+.++..+...++.++
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQL--LGGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--hCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4567888889999999999999999876665433222222222 2333 34444 4444544444454444
No 194
>PRK07791 short chain dehydrogenase; Provisional
Probab=64.94 E-value=48 Score=29.22 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=46.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC----------CcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHH
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV----------APIMKIQACRRYGATVIVE--G-ADMKEAKNIALKK 134 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~----------~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~ 134 (269)
+..+|+..++--|.++|......|.+++++.... ......+.++..|.++..+ + .+.++..+..+++
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 4568888888889999999989999877764221 1112234455667776654 3 4555666666666
Q ss_pred HhhhC
Q psy5622 135 GAELG 139 (269)
Q Consensus 135 ~~~~~ 139 (269)
.++.+
T Consensus 87 ~~~~g 91 (286)
T PRK07791 87 VETFG 91 (286)
T ss_pred HHhcC
Confidence 65544
No 195
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=64.71 E-value=47 Score=28.83 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=43.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.+++......|.+++++..... .+...+.++.+|.++..+. .+.++......+..++
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45678888899999999999899998777654321 1222344556677776544 3344444444444443
No 196
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=64.48 E-value=58 Score=29.84 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=36.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.++|+...+|..|..++..|+.+|.+-++.+. .++.|++.++.+|++.+..
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~ 242 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATVN 242 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEeC
Confidence 34555555789999999999999995344332 3567888889999975543
No 197
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=64.16 E-value=1.2e+02 Score=27.76 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=35.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++++...+|..|.+++..|+.+|..-++.+.. .+.|++.++.+|++-+.
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 445555567999999999999999853343322 45677888889986444
No 198
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=64.08 E-value=62 Score=27.87 Aligned_cols=86 Identities=13% Similarity=-0.017 Sum_probs=48.6
Q ss_pred CeEEEEcCC--CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 93 PVTVVMPIV--APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 93 ~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
+.+++.... .-..-.+.+...|++|+....+.+...+...++.+........+ . |............
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-Dl~~~~~~~~~~~ 79 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYV----------C-DVTDEDGVQAMVS 79 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE----------c-CCCCHHHHHHHHH
Confidence 444555432 33445566777899999887655444444444433222222222 1 1122233456667
Q ss_pred HHHhhcCCCCEEEEecCcc
Q psy5622 171 EIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 171 EI~~ql~~~d~vv~p~G~G 189 (269)
++.++++.+|.+|..+|..
T Consensus 80 ~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 80 QIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHhCCCCCEEEECCCCC
Confidence 7777788899999999864
No 199
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=63.90 E-value=45 Score=28.23 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=44.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.++|......|.+++++..... .......++..|.++... + .+.++..+...+..+.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAE 78 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34588899999999999999999988766553322 122345556678887654 3 3444444444444443
No 200
>PRK05876 short chain dehydrogenase; Provisional
Probab=63.69 E-value=51 Score=28.89 Aligned_cols=72 Identities=17% Similarity=0.010 Sum_probs=44.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|....+.|.+++++...... +...+.++..|.++..+ + .+.++..+...+..++.+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 346888888999999999999999987665432111 11233455567777654 3 455555555555555443
No 201
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=63.51 E-value=1.3e+02 Score=28.11 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=38.7
Q ss_pred EEEeCCC---CCCCchhhHHHHHHH--HhchH-hcCCccEEEeCCC--hHHHHHHHHHHhcCCCeEEEEcCCC
Q psy5622 38 FLKKDFF---QVTGSFKERGACYAL--LMLSE-DQKKKGVISASLG--NHAQAMCYHGSRLNIPVTVVMPIVA 102 (269)
Q Consensus 38 ~~K~E~~---nptGS~K~R~a~~~l--~~~~~-~~~~~~vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~ 102 (269)
++|++.. +|.-+++.|.....- ..+.+ .++...++...++ .-.+..|..++..|.+++++.|.-.
T Consensus 162 ~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 162 LIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLV 234 (367)
T ss_pred eeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 4555533 356888888765332 22221 2333444444444 4455667779999999999988753
No 202
>PRK06139 short chain dehydrogenase; Provisional
Probab=63.49 E-value=41 Score=30.67 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=44.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|--|.++|......|.+++++...... +...+.++.+|+++..+ + .+.++..+.+.+..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 345788888889999999999999997766543211 12234566788887654 4 3444544455554444
No 203
>PRK05867 short chain dehydrogenase; Provisional
Probab=63.46 E-value=45 Score=28.48 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=8.3
Q ss_pred CCcEEEEEcCCC
Q psy5622 211 LEIVDQGVESDR 222 (269)
Q Consensus 211 ~~~~vigVe~~~ 222 (269)
..+++..|.|--
T Consensus 182 ~gI~vn~i~PG~ 193 (253)
T PRK05867 182 HKIRVNSVSPGY 193 (253)
T ss_pred hCeEEEEeecCC
Confidence 358888887744
No 204
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=63.19 E-value=47 Score=28.74 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=40.8
Q ss_pred HHHHHHhchHhcCCccEEEe-CCC---hHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCE
Q psy5622 55 ACYALLMLSEDQKKKGVISA-SLG---NHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGAT 116 (269)
Q Consensus 55 a~~~l~~~~~~~~~~~vv~~-SsG---N~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~ 116 (269)
...+|+.+..--..+.+|++ |.| .+-++||.+|++-|=+.+.++|+..+ ..-.+.|..+|..
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~ 95 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS 95 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc
Confidence 33455544322234556654 444 36789999999999999999998755 3455666666753
No 205
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=62.94 E-value=48 Score=30.00 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=37.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.++|+...+|..|.+....|+.+|.+.++++. .++.|++.++.+||+.+..
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVN 220 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEec
Confidence 44555555799999999999999986444443 2467888888999976543
No 206
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.71 E-value=62 Score=27.12 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=27.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPI 100 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 100 (269)
+..+|+..+|..|.+++..+...|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 456788999999999999999999988877654
No 207
>PRK07454 short chain dehydrogenase; Provisional
Probab=62.61 E-value=51 Score=27.80 Aligned_cols=71 Identities=7% Similarity=0.001 Sum_probs=43.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|..|.+++......|.+++++..+... +...+.++..+.++..+ + .+.++..+...++.++.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 346788888999999999999999987776643211 11223344456666544 3 34455545555555443
No 208
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=62.51 E-value=30 Score=30.63 Aligned_cols=107 Identities=20% Similarity=0.133 Sum_probs=60.0
Q ss_pred HHHHHHHH-HhcCCCeEEEEcC-CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCC
Q psy5622 80 AQAMCYHG-SRLNIPVTVVMPI-VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYD 157 (269)
Q Consensus 80 g~alA~~a-~~~G~~~~ivvp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~ 157 (269)
|.++-+++ +.+|-+...-++. +.-+.-.+.+..-|-+|...++..+-+.+.+.++.++.+..-+... -.||.
T Consensus 72 G~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~------h~GYf 145 (253)
T COG1922 72 GIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGS------HDGYF 145 (253)
T ss_pred chhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEe------cCCCC
Confidence 57888888 6667665432221 1112223333334566888888777666777778777664333220 01243
Q ss_pred CcchhccchhHHHHHHhhcC--CCCEEEEecCcchHHHHHHhHH
Q psy5622 158 HPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGLIAGVAYDH 199 (269)
Q Consensus 158 n~~~~~g~~t~~~EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~ 199 (269)
.+.- . ..|++++. .||.++|++|.-.-=-=|....
T Consensus 146 ~~~e----~---~~i~~~I~~s~pdil~VgmG~P~QE~wi~~~~ 182 (253)
T COG1922 146 DPEE----E---EAIVERIAASGPDILLVGMGVPRQEIWIARNR 182 (253)
T ss_pred Chhh----H---HHHHHHHHhcCCCEEEEeCCCchhHHHHHHhH
Confidence 3321 1 24666665 7999999999855443334333
No 209
>PRK08068 transaminase; Reviewed
Probab=62.49 E-value=99 Score=28.50 Aligned_cols=51 Identities=12% Similarity=-0.118 Sum_probs=31.7
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|+..++|..+..++..+ ..+-.-.|++|...-..-...++.+|++++.++
T Consensus 96 ~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 96 EVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred cEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 466666677766554332 233334566666544445566788999998776
No 210
>PRK07035 short chain dehydrogenase; Provisional
Probab=62.47 E-value=59 Score=27.61 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=44.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.+++....+.|.+++++-..... +...+.+...|.++..+ + .+.++..+...+..+..+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456888889999999999999999987776543211 12233445566665543 4 444554445555554443
No 211
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=62.28 E-value=39 Score=29.01 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=26.5
Q ss_pred CccEEEeC--CChHHHHHHHHHHhcCCCeEEEEcCC
Q psy5622 68 KKGVISAS--LGNHAQAMCYHGSRLNIPVTVVMPIV 101 (269)
Q Consensus 68 ~~~vv~~S--sGN~g~alA~~a~~~G~~~~ivvp~~ 101 (269)
.++|...| +|-.-..||.+|++.|+++.+++...
T Consensus 42 ATTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 42 ATTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred hceecccCCCCCcChHHHHHHHHHcCCceEEEECCC
Confidence 35666555 47777889999999999999998664
No 212
>PRK07831 short chain dehydrogenase; Provisional
Probab=62.23 E-value=88 Score=26.81 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=22.7
Q ss_pred CccEEEeCCC-hHHHHHHHHHHhcCCCeEEE
Q psy5622 68 KKGVISASLG-NHAQAMCYHGSRLNIPVTVV 97 (269)
Q Consensus 68 ~~~vv~~SsG-N~g~alA~~a~~~G~~~~iv 97 (269)
+..+|+..+| .-|.+++......|.+++++
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~ 48 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVIS 48 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEE
Confidence 3457776666 68999999999999985554
No 213
>PRK06953 short chain dehydrogenase; Provisional
Probab=62.13 E-value=71 Score=26.64 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=39.7
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHH
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNI 130 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~ 130 (269)
..+|+..+|.-|.++|......|.+++++... ..+.+.++..+.+.+.++ .+.++..+.
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 62 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDVADPASVAGL 62 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecCCCHHHHHHH
Confidence 35788888999999999888889987776543 234445555677766666 344443333
No 214
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=62.05 E-value=48 Score=28.07 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=43.5
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
..+|+..+|.-|.++|....+.|.++++....+.. ......++..+.++..+. .+..+..+..+++.+.
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSA 77 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHh
Confidence 45788888999999999988889987765533321 223445666777776543 3444444444454443
No 215
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=62.00 E-value=42 Score=30.13 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=35.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++++...+|..|.+++..|+.+|.+++++.+ ++.+++.++.+|++-+.
T Consensus 164 ~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 164 GDLVAVQGIGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 34555545899999999999999998555433 34567777889985443
No 216
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=61.85 E-value=36 Score=30.22 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=30.5
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCE
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGAT 116 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 116 (269)
+++...+|..|.+++..|+.+|.+++ ++..+.+..+...++.+|++
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCc
Confidence 43334468888888888998888843 33233345666777778864
No 217
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=61.77 E-value=1.3e+02 Score=27.69 Aligned_cols=52 Identities=15% Similarity=-0.097 Sum_probs=31.3
Q ss_pred cEEEeCCChHHHHHHHHHHh-c-CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSR-L-NIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~-~-G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|+...++..+..++..+-. - |-.-.|++|.-.-..-...++.+|++++.++
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp 145 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLN 145 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEec
Confidence 56666666776655444321 1 1133556665544445566788999999876
No 218
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=61.73 E-value=54 Score=27.56 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=43.2
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~ 139 (269)
+|+..+|.-|.++|......|.+++++...+.+ ....+.++..+.++..+. .+.++..+...+..++.+
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 75 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHG 75 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 678888899999999999999997766543321 223345556677776554 344444444444444443
No 219
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=61.46 E-value=51 Score=28.18 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=41.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+.++|-.|.++|......|.+++++...... ..+.....+.++..+ + .+.++..+...++.++.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPAR--ARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERF 78 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHH--HHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356888899999999999999999987776443211 112222334455443 3 34455555555554443
No 220
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.37 E-value=66 Score=27.06 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=43.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEGA---DMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~~~~ 137 (269)
...+|+..+|..|.+++......|.+++++.....+ ......++..|.+++.+.. +.++..+..++..++
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346888889999999999988899987776543221 1223345566777765543 344444444444333
No 221
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=61.37 E-value=1.2e+02 Score=27.15 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=36.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
...++...+|..|.+++..|+.+|.+.++++. .++.|...++.+|++.+.
T Consensus 176 ~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~~ 225 (350)
T cd08240 176 DEPVVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVVV 225 (350)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEEe
Confidence 45555556799999999999999996555443 246677788889986443
No 222
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=61.31 E-value=69 Score=27.05 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=60.9
Q ss_pred eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCC
Q psy5622 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGA 115 (269)
Q Consensus 36 ~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga 115 (269)
++|...|.-.+|- --.|.. .++++ +-.+.+.+.+-..|.-++++-++ +.+-.+.++
T Consensus 7 ~~F~~~~~~p~TK-~EIRal--~ls~L-~~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~------------------ 62 (187)
T COG2242 7 ELFERDEGGPMTK-EEIRAL--TLSKL-RPRPGDRLWDIGAGTGSITIEWA--LAGPSGRVI------------------ 62 (187)
T ss_pred hhhccCCCCCCcH-HHHHHH--HHHhh-CCCCCCEEEEeCCCccHHHHHHH--HhCCCceEE------------------
Confidence 4666666665552 123443 33443 35556788886666655555554 444333333
Q ss_pred EEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEecCcchHHHHH
Q psy5622 116 TVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGV 195 (269)
Q Consensus 116 ~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi 195 (269)
-++.+ .++.+..++-+++.+ .+|....+ .-++|.+.+++.||++|+ |+|+.+-++
T Consensus 63 ---AIe~~-~~a~~~~~~N~~~fg----------------~~n~~vv~---g~Ap~~L~~~~~~daiFI--GGg~~i~~i 117 (187)
T COG2242 63 ---AIERD-EEALELIERNAARFG----------------VDNLEVVE---GDAPEALPDLPSPDAIFI--GGGGNIEEI 117 (187)
T ss_pred ---EEecC-HHHHHHHHHHHHHhC----------------CCcEEEEe---ccchHhhcCCCCCCEEEE--CCCCCHHHH
Confidence 23322 233333333344333 22333222 335666667667887775 455777777
Q ss_pred HhHHHHH
Q psy5622 196 AYDHPDI 202 (269)
Q Consensus 196 ~~~~k~~ 202 (269)
.....+.
T Consensus 118 le~~~~~ 124 (187)
T COG2242 118 LEAAWER 124 (187)
T ss_pred HHHHHHH
Confidence 7776655
No 223
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=61.29 E-value=91 Score=25.57 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=71.5
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCC
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 146 (269)
..++|..-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. .+.++.. ++.+...+.-
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~----~~l~ell-------~~aDiv~~~~- 99 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY----VSLDELL-------AQADIVSLHL- 99 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE----SSHHHHH-------HH-SEEEE-S-
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee----eehhhhc-------chhhhhhhhh-
Confidence 356788889999999999999999999988888664333 233444422 1444432 2333332222
Q ss_pred CCCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEecCcchHHH--HHHhHHHHHHhcCCCCCCCcEEEEEcCCC
Q psy5622 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIA--GVAYDHPDIMAGQGTVGLEIVDQGVESDR 222 (269)
Q Consensus 147 ~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~--Gi~~~~k~~~~~~g~~~~~~~vigVe~~~ 222 (269)
|...+-..-+..|.+++++ ++.+++-++-|+.+- .+..+++ ..++.-.+.+...
T Consensus 100 ------------plt~~T~~li~~~~l~~mk-~ga~lvN~aRG~~vde~aL~~aL~---------~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 100 ------------PLTPETRGLINAEFLAKMK-PGAVLVNVARGELVDEDALLDALE---------SGKIAGAALDVFE 155 (178)
T ss_dssp ------------SSSTTTTTSBSHHHHHTST-TTEEEEESSSGGGB-HHHHHHHHH---------TTSEEEEEESS-S
T ss_pred ------------ccccccceeeeeeeeeccc-cceEEEeccchhhhhhhHHHHHHh---------hccCceEEEECCC
Confidence 1112233466677788876 789999999998764 3444443 3356656655443
No 224
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=61.24 E-value=95 Score=29.00 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=38.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++|+...+|..|..++..|+.+|.+.+++. +..+.|++..+.+|++.+.
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~Ga~~v~ 235 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSFGCETVD 235 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHcCCeEEe
Confidence 4556557789999999999999999876644 2346788899999998543
No 225
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.16 E-value=76 Score=26.80 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=44.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH--HHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI--MKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
...+|+..+|.-|..++......|.+++++...+.+. .....++..|.++..+. .+.++..+..++..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEE 79 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3467888889999999999999999877654333221 22345666788876654 3444444444444444
No 226
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=61.04 E-value=79 Score=27.06 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=45.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.++++......+ ....+.++..|.++..+ + .+..+..+...++.++.+
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 84 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG 84 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 456888888999999999999999987776553322 22334555667776544 4 344444444445544443
No 227
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.03 E-value=87 Score=26.31 Aligned_cols=86 Identities=12% Similarity=-0.006 Sum_probs=47.0
Q ss_pred CeEEEEcCC--CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 93 PVTVVMPIV--APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 93 ~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
+.+++.... .-..-.+.+...|.+|+.+..+.....+...++........... + ...++. .......
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~-~-------D~~~~~---~~~~~~~ 76 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIAT-A-------DVSDYE---EVTAAIE 76 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEE-C-------CCCCHH---HHHHHHH
Confidence 344454432 33445556777899999887654443334444432211121111 0 022332 3345666
Q ss_pred HHHhhcCCCCEEEEecCcc
Q psy5622 171 EIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 171 EI~~ql~~~d~vv~p~G~G 189 (269)
++.++++.+|.+|..+|..
T Consensus 77 ~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 77 QLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHcCCccEEEEcCccc
Confidence 7777778899999998753
No 228
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=60.81 E-value=47 Score=30.49 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=35.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++|+...+|..|.+++..|+.+|.+-++.+ +.++.|++.++.+|++.+.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 4455555679999999999999998433333 2356678888889996544
No 229
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=60.67 E-value=42 Score=30.11 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=34.5
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.+|...+|..|.+++.+|+.+|.+++++.+. . ++..++.+|++.+..
T Consensus 181 vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~~ 227 (350)
T cd08274 181 VLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVIL 227 (350)
T ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEEe
Confidence 3455666999999999999999996655432 2 667778899975443
No 230
>PRK07806 short chain dehydrogenase; Provisional
Probab=60.53 E-value=74 Score=26.87 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=43.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.+++......|.+++++...... +.-...++..|.++..+. .+.++..+...++.++
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 346788888999999999988899998776643211 111233455576665543 3444444444444443
No 231
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=60.35 E-value=51 Score=29.75 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=37.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++|+....|..|.++...|+.+|.+.++.+.. ++.|...++.+|++.+.
T Consensus 175 g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 175 DDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVL 224 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEe
Confidence 455555777999999999999999876666543 35677788889986654
No 232
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=60.31 E-value=68 Score=27.18 Aligned_cols=68 Identities=6% Similarity=0.028 Sum_probs=42.9
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
.+|+..+|..|.+++......|.+++++-..... +...+.++..|.++..+. .+.++..+...+..+.
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5788888999999999999999987665443211 223345666787776544 3444444444444444
No 233
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=60.25 E-value=1.3e+02 Score=26.89 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=34.5
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.+|...+|..|.+++..|+.+|.++++..+. +.+.+.++.+|++-+..
T Consensus 169 vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~~ 216 (341)
T cd08297 169 VVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAFVD 216 (341)
T ss_pred EEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEEEc
Confidence 3455666779999999999999986665443 45666778889765443
No 234
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.00 E-value=73 Score=27.51 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=39.9
Q ss_pred ccEEEeCCC--hHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHH-HcCCEE-EEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISASLG--NHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACR-RYGATV-IVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~-~~Ga~v-~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+..++ --|.++|...++.|.++++.-.........+.+. .+|... +.++ .+.++..+..++..++.+
T Consensus 10 ~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 10 KGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred EEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456776665 3677788777788998766533211123344443 335443 3455 555666666666666555
No 235
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=59.93 E-value=57 Score=28.01 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=42.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-HHcCCEEE--EeC-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-RRYGATVI--VEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~Ga~v~--~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.+++++-.. +.+.+.+ +.++.++. .++ .+.++..+...+..++.+
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 456888888899999999999999987665432 2333333 23454444 344 445555555555555443
No 236
>PRK08177 short chain dehydrogenase; Provisional
Probab=59.89 E-value=67 Score=26.86 Aligned_cols=64 Identities=11% Similarity=-0.023 Sum_probs=39.2
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHH
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKK 134 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~ 134 (269)
..+|+..+|.-|.++|....+.|.+++++.........++.+ -+..+..++ .+.++..+...++
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~ 67 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQAL--PGVHIEKLDMNDPASLDQLLQRL 67 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhc--cccceEEcCCCCHHHHHHHHHHh
Confidence 357888899999999999888999877766443322222222 234444455 4545554544444
No 237
>PLN02740 Alcohol dehydrogenase-like
Probab=59.77 E-value=49 Score=30.51 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=35.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++|+....|..|.+++.+|+.+|.+-++.+ +.++.|++.++.+|++.+.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGV--DINPEKFEKGKEMGITDFI 248 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEE--cCChHHHHHHHHcCCcEEE
Confidence 4556655679999999999999998533333 2245678888889997544
No 238
>PRK07681 aspartate aminotransferase; Provisional
Probab=59.72 E-value=1.2e+02 Score=27.98 Aligned_cols=52 Identities=13% Similarity=-0.097 Sum_probs=31.9
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..|+..+++..+..++..+- .+-.-.|++|.-.-..-...++.+|++++.++
T Consensus 94 ~~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~ 145 (399)
T PRK07681 94 KEVLLLMGSQDGLVHLPMVY-ANPGDIILVPDPGYTAYETGIQMAGATSYYMP 145 (399)
T ss_pred CeEEECCCcHHHHHHHHHHh-CCCCCEEEECCCCccchHHHHHhcCCEEEEEe
Confidence 45776777777666554332 22223455655444445566788999999875
No 239
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=59.59 E-value=1.5e+02 Score=27.45 Aligned_cols=77 Identities=14% Similarity=-0.001 Sum_probs=44.9
Q ss_pred CCCCCCchhhHHHHHHHHhchHhc----CCccE--EEeCCChHHHHHHHHHHh-cCCCeEEEEcCCCcHHHHHHHHHcCC
Q psy5622 43 FFQVTGSFKERGACYALLMLSEDQ----KKKGV--ISASLGNHAQAMCYHGSR-LNIPVTVVMPIVAPIMKIQACRRYGA 115 (269)
Q Consensus 43 ~~nptGS~K~R~a~~~l~~~~~~~----~~~~v--v~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~l~~~Ga 115 (269)
+..+.|....|-+...... ... ..+.+ +..+++..|..++..+-. ..---.|+++.-.-+.-...++.+|+
T Consensus 65 Y~~~~G~~~lR~aia~~~~--~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~ 142 (396)
T PRK09257 65 YLPIEGLAAYRQAVQELLF--GADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGL 142 (396)
T ss_pred cCCCCCCHHHHHHHHHHhc--CCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCC
Confidence 3444687777776543321 111 12334 667777777777753222 12123566666655556778888999
Q ss_pred EEEEeC
Q psy5622 116 TVIVEG 121 (269)
Q Consensus 116 ~v~~~~ 121 (269)
+++.++
T Consensus 143 ~~v~v~ 148 (396)
T PRK09257 143 EVKTYP 148 (396)
T ss_pred cEEEEe
Confidence 999775
No 240
>PRK07326 short chain dehydrogenase; Provisional
Probab=59.57 E-value=66 Score=26.91 Aligned_cols=32 Identities=13% Similarity=-0.001 Sum_probs=26.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
...+|+..+|..|.+++......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 45678888999999999998888999777654
No 241
>PRK12827 short chain dehydrogenase; Provisional
Probab=59.50 E-value=90 Score=26.17 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=35.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC-CcHHH----HHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV-APIMK----IQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~----~~~l~~~Ga~v~~~~ 121 (269)
...+|+..+|-.|.++|......|.+++++.... ....+ ...+...|.++..+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLA 65 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEE
Confidence 3468888889999999999888999877755321 11222 233445566665443
No 242
>PLN00175 aminotransferase family protein; Provisional
Probab=59.42 E-value=75 Score=29.81 Aligned_cols=51 Identities=18% Similarity=-0.058 Sum_probs=32.1
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|+..+++..|..++..+- ++-.-.|++++..-..-...++.+|++++.++
T Consensus 117 ~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~ 167 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVT 167 (413)
T ss_pred CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEE
Confidence 4666666677766555543 33334455555444555677888999998875
No 243
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=59.34 E-value=66 Score=27.16 Aligned_cols=70 Identities=9% Similarity=0.069 Sum_probs=43.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|--|.++|......|.++++...... .+.....++..|.++..+. .+.++..+..++..++
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45688888999999999988888988776443221 1122345556777886554 3444444444444444
No 244
>PRK06172 short chain dehydrogenase; Provisional
Probab=59.19 E-value=70 Score=27.16 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=43.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|.-|.++|......|.+++++...... +.....++..|.++..+. .+.++..+...+..++
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456788888999999999988999987776543221 223445566777776543 3333333444444333
No 245
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=59.18 E-value=1.3e+02 Score=26.68 Aligned_cols=30 Identities=20% Similarity=0.055 Sum_probs=25.5
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
.|..-..|+.|.++|...+..|++++++-.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~ 34 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDV 34 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeC
Confidence 566678899999999999999998777654
No 246
>PRK12743 oxidoreductase; Provisional
Probab=59.17 E-value=92 Score=26.61 Aligned_cols=75 Identities=13% Similarity=0.018 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCCEE
Q psy5622 104 IMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAI 182 (269)
Q Consensus 104 ~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~v 182 (269)
..-.+.+...|++|+.+. .+.+...+...++.+......... -|....+.......|+.++++.+|.+
T Consensus 16 ~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~Dl~~~~~~~~~~~~~~~~~~~id~l 84 (256)
T PRK12743 16 KACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQ-----------LDLSDLPEGAQALDKLIQRLGRIDVL 84 (256)
T ss_pred HHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEE-----------ccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 445566667899998764 343333333333333222222221 12222234456777888888889999
Q ss_pred EEecCcc
Q psy5622 183 VVPVGGG 189 (269)
Q Consensus 183 v~p~G~G 189 (269)
|..+|.+
T Consensus 85 i~~ag~~ 91 (256)
T PRK12743 85 VNNAGAM 91 (256)
T ss_pred EECCCCC
Confidence 9998853
No 247
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=59.17 E-value=33 Score=32.21 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=75.1
Q ss_pred HHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC-------CHHHHHHHHHHHHhhhCCeeecCCCCCCccccCC
Q psy5622 84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA-------DMKEAKNIALKKGAELGLTYINGYLSSGLSVLGY 156 (269)
Q Consensus 84 A~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~ 156 (269)
=..-.++|++..++.-. +.-+-..+..|.+|+.+++ +|.+-.+.+.+..++++.+|++- . .
T Consensus 239 p~F~e~yglk~a~Ia~~---~l~KGlar~~GmDvi~vegatG~~dtn~~~k~k~a~eal~~yDfv~vhi--------k-~ 306 (408)
T COG3635 239 PSFQERYGLKGACIAAV---PLIKGLARLVGMDVIEVEGATGYIDTNYRGKAKAAIEALKEYDFVFVHI--------K-A 306 (408)
T ss_pred CCHhHhhCcceEEEEec---HHHHhHHHHhCCceeecccccCccCccHHHHHHHHHHHHhhCCEEEEEe--------c-c
Confidence 33667888887777653 3445677889999999875 66777778888888888888875 1 1
Q ss_pred CCcchhccchhHHHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCC
Q psy5622 157 DHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPT 236 (269)
Q Consensus 157 ~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~ 236 (269)
.+.....|--.-=.+.+|. +|.++.| -+. + ....-+++|.+..+-|..-.-++|+|+
T Consensus 307 tDeagHdG~~e~Kv~~IE~---iD~~i~p------------ll~-~-------~~~~~~i~vt~DHsTPv~vk~Hs~dPV 363 (408)
T COG3635 307 TDEAGHDGDFEGKVRVIED---IDKAIGP------------LLD-L-------DLDEDVIAVTGDHSTPVSVKDHSGDPV 363 (408)
T ss_pred CccccCCCCHHHhHHHHHH---HHHHhhh------------hhc-c-------ccCCcEEEEeCCCCCcccccccCCCCc
Confidence 2333444443333444444 3433322 111 2 445667888888887776555667777
Q ss_pred C
Q psy5622 237 P 237 (269)
Q Consensus 237 ~ 237 (269)
|
T Consensus 364 P 364 (408)
T COG3635 364 P 364 (408)
T ss_pred c
Confidence 6
No 248
>PRK08265 short chain dehydrogenase; Provisional
Probab=59.00 E-value=66 Score=27.72 Aligned_cols=70 Identities=11% Similarity=-0.005 Sum_probs=42.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|--|.++|......|.+++++-... ....+..+..+.++..+ + .+.++..+...+..++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4567888888999999999999999876654321 11122233446666544 4 344444455555544443
No 249
>PRK06198 short chain dehydrogenase; Provisional
Probab=58.92 E-value=96 Score=26.38 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=43.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH--HHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI--MKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|..|..++......|.+.++++.....+ .....++..|.++..+ + .+.++..+...+..++.+
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG 83 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3467888889999999999999999844444433221 1233556678887544 3 344444444444444433
No 250
>PRK06138 short chain dehydrogenase; Provisional
Probab=58.78 E-value=75 Score=26.83 Aligned_cols=69 Identities=10% Similarity=0.008 Sum_probs=42.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|-.|.++|......|.+++++...... ......++ .+.++..+ + .+.++..+...++.++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456888999999999999888889887666533211 12222333 56666544 3 3445555555555444
No 251
>PRK07035 short chain dehydrogenase; Provisional
Probab=58.71 E-value=82 Score=26.70 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=47.1
Q ss_pred CeEEEEcCC--CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 93 PVTVVMPIV--APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 93 ~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
+.+++.... .-..-.+.+...|++|+.+..+.+...+...++.+........+ . +.........+..
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~----------~-D~~~~~~~~~~~~ 77 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA----------C-HIGEMEQIDALFA 77 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE----------c-CCCCHHHHHHHHH
Confidence 444555332 33455667777899999888655544444444433222111111 1 1112233445666
Q ss_pred HHHhhcCCCCEEEEecCc
Q psy5622 171 EIVDQVANIDAIVVPVGG 188 (269)
Q Consensus 171 EI~~ql~~~d~vv~p~G~ 188 (269)
++.++++.+|++|..+|.
T Consensus 78 ~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 78 HIRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 777777789999988874
No 252
>PRK06949 short chain dehydrogenase; Provisional
Probab=58.64 E-value=65 Score=27.37 Aligned_cols=70 Identities=10% Similarity=0.020 Sum_probs=41.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEE--EeC-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVI--VEG-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~--~~~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|.-|.+++....+.|.+++++...... +.....++..+.++. .++ .+.++..+...++.++
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 456788889999999999999999987766543211 111223344455554 344 3444544444444443
No 253
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=58.63 E-value=52 Score=28.68 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=34.2
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEE
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI 118 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 118 (269)
.++...+|..|.+++..|+.+|.+++...+ ++.+...++.+|+...
T Consensus 136 vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 181 (305)
T cd08270 136 VLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEV 181 (305)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 355566699999999999999998555433 3567788888998633
No 254
>PRK05839 hypothetical protein; Provisional
Probab=58.34 E-value=1.2e+02 Score=27.89 Aligned_cols=76 Identities=13% Similarity=-0.061 Sum_probs=41.2
Q ss_pred CCCchhhHHHHHHHHhchHhc---CCccEEEeCCChHHHHHHHHHHhc-CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 46 VTGSFKERGACYALLMLSEDQ---KKKGVISASLGNHAQAMCYHGSRL-NIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 46 ptGS~K~R~a~~~l~~~~~~~---~~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
|.|....|-+..-.... ..+ ..+.|+..+++..+..+...+-.. +-.-.|++|.-.-..-...++.+|++++.++
T Consensus 59 ~~G~~~lr~aia~~l~~-~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~ 137 (374)
T PRK05839 59 SAGEESLREAQRGFFKR-RFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMP 137 (374)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEee
Confidence 34766777654322110 111 234566666666655444333222 2224566665555555566788999999886
Q ss_pred C
Q psy5622 122 A 122 (269)
Q Consensus 122 ~ 122 (269)
-
T Consensus 138 ~ 138 (374)
T PRK05839 138 L 138 (374)
T ss_pred c
Confidence 3
No 255
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=58.32 E-value=1.2e+02 Score=25.95 Aligned_cols=129 Identities=14% Similarity=0.074 Sum_probs=77.9
Q ss_pred EEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCc
Q psy5622 72 ISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGL 151 (269)
Q Consensus 72 v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (269)
|+.++-+.-.++....+.+. ++.|=...-.+.+..+.....||+-+..|..-.+..+ .+++.+..|+.+
T Consensus 39 it~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~----~~~~~~i~~iPG------ 107 (204)
T TIGR01182 39 VTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAK----HAQDHGIPIIPG------ 107 (204)
T ss_pred EeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHH----HHHHcCCcEECC------
Confidence 55666676677777777765 5554445556777778888889999988865444443 455567666666
Q ss_pred cccCCCCcchhccchhHHHHHHhhcC-CCCE-EEEecCc-chHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHH
Q psy5622 152 SVLGYDHPDIMAGQGTVGLEIVDQVA-NIDA-IVVPVGG-GGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFST 228 (269)
Q Consensus 152 ~~~g~~n~~~~~g~~t~~~EI~~ql~-~~d~-vv~p~G~-Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~ 228 (269)
.- +--|+.+-++ ..|. =+.|++. ||. ...+.++.- -|.++++.+-=-....+..
T Consensus 108 ----~~----------TptEi~~A~~~Ga~~vKlFPA~~~GG~--~yikal~~p-------lp~i~~~ptGGV~~~N~~~ 164 (204)
T TIGR01182 108 ----VA----------TPSEIMLALELGITALKLFPAEVSGGV--KMLKALAGP-------FPQVRFCPTGGINLANVRD 164 (204)
T ss_pred ----CC----------CHHHHHHHHHCCCCEEEECCchhcCCH--HHHHHHhcc-------CCCCcEEecCCCCHHHHHH
Confidence 33 3356666654 3454 4677663 321 113344433 4677777544333456777
Q ss_pred HHHcCC
Q psy5622 229 AIKHGK 234 (269)
Q Consensus 229 ~~~~g~ 234 (269)
+++.|.
T Consensus 165 ~l~aGa 170 (204)
T TIGR01182 165 YLAAPN 170 (204)
T ss_pred HHhCCC
Confidence 888775
No 256
>PRK05866 short chain dehydrogenase; Provisional
Probab=57.88 E-value=67 Score=28.47 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=43.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~ 138 (269)
...+|+..+|.-|.++|......|.+++++...... +.....+...|.++..+ + .+.++..+...++.++.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 346788888999999999988889988776543211 12223444456666544 3 34445445555554443
No 257
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=57.86 E-value=72 Score=29.96 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=52.8
Q ss_pred CCchhhHHHHHHHHhchHhcC----Ccc-EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 47 TGSFKERGACYALLMLSEDQK----KKG-VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 47 tGS~K~R~a~~~l~~~~~~~~----~~~-vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|.-..|-+..--.. +..+ ... |+...++..|..+++.+-.-.=+- |++|...-+.-...++..|++++.++
T Consensus 65 ~G~~~LReaia~~~~--~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDe-Vlip~P~Y~~y~~~~~~~gg~~v~v~ 141 (393)
T COG0436 65 AGIPELREAIAEKYK--RRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDE-VLIPDPGYPSYEAAVKLAGGKPVPVP 141 (393)
T ss_pred CCCHHHHHHHHHHHH--HHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCE-EEEeCCCCcCHHHHHHhcCCEEEEEe
Confidence 476677766433221 2211 223 777777888777777664443222 44554444455678888999999887
Q ss_pred C-----CHH-HHHHHHHHHHhhhCCeeecC
Q psy5622 122 A-----DMK-EAKNIALKKGAELGLTYING 145 (269)
Q Consensus 122 ~-----~~~-~~~~~a~~~~~~~~~~~~~~ 145 (269)
- ++. +.......+.++....+++.
T Consensus 142 l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~ 171 (393)
T COG0436 142 LDEEENGFKPDLEDLEAAITPKTKAIILNS 171 (393)
T ss_pred CCcCccCCcCCHHHHHhhcCccceEEEEeC
Confidence 3 222 22222233334445666655
No 258
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.81 E-value=93 Score=26.85 Aligned_cols=72 Identities=10% Similarity=-0.020 Sum_probs=42.1
Q ss_pred CccEEEeCC--ChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHH-Hc-CCEEE--EeC-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASL--GNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACR-RY-GATVI--VEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~-~~-Ga~v~--~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+ +.-|.++|..-.+.|.++++.-.......+++.+. .+ |.++. .++ .+.++..+..+++.++.+
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 86 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEVG 86 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 345666544 68899999998899998776543222223333332 22 44554 344 455565556666655544
No 259
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=57.72 E-value=52 Score=29.12 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=34.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
..+++...+|-.|.+++..|+.+|.+++++.+ ++.+.+.++.+|+....
T Consensus 156 g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 156 GDKVAVLGDGKLGLLIAQVLALTGPDVVLVGR---HSEKLALARRLGVETVL 204 (319)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEe
Confidence 34454445788999999999999999544322 35677777778986543
No 260
>PRK06194 hypothetical protein; Provisional
Probab=57.64 E-value=82 Score=27.39 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=42.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEGA---DMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~~~~ 137 (269)
...+|+..+|.-|.++|......|.+++++-.... .......+...|.++..+.. +.++..+...+..++
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34688888899999999998888998766543211 12223344555777765543 444444444444443
No 261
>PRK06181 short chain dehydrogenase; Provisional
Probab=57.63 E-value=73 Score=27.25 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=42.8
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
..+|+..+|..|.+++......|.+++++...... +...+.++..|.++..+. .+.++..+...+..++
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35788888999999999988999987776643211 122334555677776543 3444444444444444
No 262
>PRK08589 short chain dehydrogenase; Validated
Probab=57.51 E-value=72 Score=27.70 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=48.8
Q ss_pred CeEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 93 PVTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 93 ~~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
+.+++... ..-..-.+.+...|++|+.+..+ ++..+...++.+..+...... ++ ..++ ........
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~-~D-------l~~~---~~~~~~~~ 74 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYH-VD-------ISDE---QQVKDFAS 74 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEE-ee-------cCCH---HHHHHHHH
Confidence 44555543 23345566677789999998866 554444555543222222111 00 2233 23456667
Q ss_pred HHHhhcCCCCEEEEecCcc
Q psy5622 171 EIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 171 EI~~ql~~~d~vv~p~G~G 189 (269)
++.++++.+|.+|..+|..
T Consensus 75 ~~~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 75 EIKEQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHHHHcCCcCEEEECCCCC
Confidence 7777778899999998753
No 263
>PRK06108 aspartate aminotransferase; Provisional
Probab=57.44 E-value=1.5e+02 Score=26.94 Aligned_cols=75 Identities=16% Similarity=-0.036 Sum_probs=40.5
Q ss_pred CCCchhhHHHHHHHHhchHh--cCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 46 VTGSFKERGACYALLMLSED--QKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 46 ptGS~K~R~a~~~l~~~~~~--~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
+.|....|-+.......... -....|+..++|..+..++..+-.. -.-.|+++...-..-...++.+|++++.++
T Consensus 60 ~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~ 136 (382)
T PRK06108 60 NLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVG-PGDEVVAVTPLWPNLVAAPKILGARVVCVP 136 (382)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcC-CCCEEEEeCCCccchHHHHHHCCCEEEEee
Confidence 35766666654432211001 1234577777788877666654322 112344444333344556788999998775
No 264
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.31 E-value=62 Score=28.24 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=34.0
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
+|...+|..|.++...|+..|.+++.+.+. +.+.+.++.+|++-+.
T Consensus 147 lV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 147 LIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVV 192 (320)
T ss_pred EEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 444556999999999999999996555443 4566777889986554
No 265
>KOG2862|consensus
Probab=57.17 E-value=1.1e+02 Score=28.38 Aligned_cols=79 Identities=20% Similarity=0.143 Sum_probs=51.0
Q ss_pred CCccEEEeCCChHHHHHHHHHHhc-CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHH---HHHHHHHhhh-CCe
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRL-NIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAK---NIALKKGAEL-GLT 141 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~---~~a~~~~~~~-~~~ 141 (269)
...+++.+++|..|.-.|+.=-.. |-++.++.--.....-.+..+.|||+|..++.++.++. ...+++++.. +.+
T Consensus 67 n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~v 146 (385)
T KOG2862|consen 67 NAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAV 146 (385)
T ss_pred CCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceE
Confidence 457888899998876655443222 55555555445677788899999999999886655443 3445555543 355
Q ss_pred eecC
Q psy5622 142 YING 145 (269)
Q Consensus 142 ~~~~ 145 (269)
++-+
T Consensus 147 fv~h 150 (385)
T KOG2862|consen 147 FVTH 150 (385)
T ss_pred EEEe
Confidence 5544
No 266
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=57.17 E-value=58 Score=29.64 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=35.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++|+...+|-.|.+++..|+.+|.+.++.+. .++.|++.++.+|++-+.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV 226 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 44555556788999999999999987444442 245678888899996543
No 267
>PRK05872 short chain dehydrogenase; Provisional
Probab=56.76 E-value=66 Score=28.46 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=43.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-HHc--CCEEEE--eC-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-RRY--GATVIV--EG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~--Ga~v~~--~~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.+++++-.. ..+++.+ +.+ +.+++. ++ .+.++..+...++.++.+
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLE---EAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 456888888999999999999999976665432 2233222 223 455655 44 455565566666655544
No 268
>PRK06172 short chain dehydrogenase; Provisional
Probab=56.59 E-value=1.1e+02 Score=26.01 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=46.6
Q ss_pred CeEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCe-e-ecCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLT-Y-INGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+.++++.. ..-..-.+.+...|++|+.+..+.+...+...++.+..+.. + ..+ ..++. ....+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D----------~~~~~---~i~~~ 74 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACD----------VTRDA---EVKAL 74 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC----------CCCHH---HHHHH
Confidence 44555533 23445556677789999988866554444444443322211 1 122 22332 23455
Q ss_pred HHHHHhhcCCCCEEEEecCc
Q psy5622 169 GLEIVDQVANIDAIVVPVGG 188 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G~ 188 (269)
..++.++++++|.+|..+|.
T Consensus 75 ~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 75 VEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 56666777789999998875
No 269
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=56.58 E-value=57 Score=30.11 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=36.2
Q ss_pred CccE-EEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGV-ISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~v-v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
..++ |...+|..|.+++..|+.+|.+.+++.+ ++.+.+.++.+|++.+.
T Consensus 194 g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~---s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 194 GDNVLIWGASGGLGSMAIQLARAAGANPVAVVS---SEEKAEYCRALGAEGVI 243 (393)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 3454 4455699999999999999999765543 56778888889986544
No 270
>PRK09135 pteridine reductase; Provisional
Probab=56.43 E-value=88 Score=26.23 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=28.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV 101 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 101 (269)
...+|+..+|.-|..++..-...|.+++++....
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~ 40 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHRS 40 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4568888999999999999888999988877543
No 271
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=56.43 E-value=1.8e+02 Score=27.38 Aligned_cols=63 Identities=17% Similarity=0.073 Sum_probs=39.3
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC-CcHHHHHHHHHcCCE-EEEeCCCHHHHHH
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV-APIMKIQACRRYGAT-VIVEGADMKEAKN 129 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~-v~~~~~~~~~~~~ 129 (269)
..+.++.++.+....+++.....+|+++..+.... .+.......+.++.+ ++..+.+..+..+
T Consensus 286 ~gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~e~~~ 350 (410)
T cd01968 286 EGKKAALYTGGVKSWSLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIVDDANPRELKK 350 (410)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEEeCCCHHHHHH
Confidence 45667778888889999999999999988876433 333333344444433 3333444444333
No 272
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=56.31 E-value=66 Score=29.48 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=35.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.++|+....|..|.++...|+.+|.+++++... ++.+....+.+|++-+...
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi~~ 235 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFLVS 235 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEEcC
Confidence 456666777999999999999999986554332 2233455677999755433
No 273
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=56.28 E-value=89 Score=25.69 Aligned_cols=74 Identities=15% Similarity=0.024 Sum_probs=48.4
Q ss_pred CCCchhhHHHHHHHHhchHhcCC-ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcC---------CCcHHHHHHHHHcCC
Q psy5622 46 VTGSFKERGACYALLMLSEDQKK-KGVISASLGNHAQAMCYHGSRLNIPVTVVMPI---------VAPIMKIQACRRYGA 115 (269)
Q Consensus 46 ptGS~K~R~a~~~l~~~~~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~---------~~~~~~~~~l~~~Ga 115 (269)
|+--+-++.....+.++. +.+- ..||.+|+|.++.-+.-+... .+++++|.-. ..+++-.+.++-.|+
T Consensus 7 pG~eNT~~tle~a~erA~-elgik~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 7 PGKENTDETLEIAVERAK-ELGIKHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA 84 (186)
T ss_pred CcccchHHHHHHHHHHHH-hcCcceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCc
Confidence 555566777777778775 4444 445667778887655444322 3777776522 256777888999999
Q ss_pred EEEEeC
Q psy5622 116 TVIVEG 121 (269)
Q Consensus 116 ~v~~~~ 121 (269)
+|..-.
T Consensus 85 ~v~~~s 90 (186)
T COG1751 85 KVLTQS 90 (186)
T ss_pred eeeeeh
Confidence 997643
No 274
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.21 E-value=97 Score=26.04 Aligned_cols=69 Identities=9% Similarity=0.014 Sum_probs=41.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHH-HHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIM-KIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
...+|+..+|..|.+++......|.+++++........ ....+.. +.++..+ + .+.++..+...+..++
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35688899999999999998889999766654432111 1222222 4555444 3 3444444444444343
No 275
>PRK14030 glutamate dehydrogenase; Provisional
Probab=56.15 E-value=52 Score=31.64 Aligned_cols=47 Identities=26% Similarity=0.284 Sum_probs=36.9
Q ss_pred hHHHHHHHHhchHhc----CCccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622 52 ERGACYALLMLSEDQ----KKKGVISASLGNHAQAMCYHGSRLNIPVTVVM 98 (269)
Q Consensus 52 ~R~a~~~l~~~~~~~----~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv 98 (269)
-|+..+.+..+.+.. +..+|+.-..||-|..+|.....+|.+++.+.
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 208 GFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 367777776654433 35789999999999999999999999998853
No 276
>PRK09134 short chain dehydrogenase; Provisional
Probab=56.14 E-value=1.1e+02 Score=26.22 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=42.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH--HHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI--MKIQACRRYGATVIVEG---ADMKEAKNIALKKGA 136 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~ 136 (269)
+..+|+..+|.-|..++....+.|.+++++...+.+. .-...++..|.++..+. .+.++..+...+..+
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 83 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASA 83 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4568888999999999999999999887765433221 12233445577776543 344443333334333
No 277
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=56.07 E-value=52 Score=29.23 Aligned_cols=47 Identities=13% Similarity=-0.017 Sum_probs=33.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATV 117 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 117 (269)
..+++....|..|.+++..|+.+|.+++++.+.. .+++.++.+|++-
T Consensus 168 ~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~~ 214 (329)
T cd08298 168 GQRLGLYGFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGADW 214 (329)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCcE
Confidence 3445445678889898889999998766655533 5666667788754
No 278
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.05 E-value=81 Score=28.09 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=42.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHH
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQACRRYGATVIVEGA---DMKEAKNIALK 133 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~ 133 (269)
+..+|+..+|.-|.++|......|.++++.-.... .+.....++..|.++..+.. +.++..+...+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~ 83 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVAT 83 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 45688888899999999998888998766543221 12334556777888876553 34444443333
No 279
>PRK07904 short chain dehydrogenase; Provisional
Probab=56.03 E-value=1.2e+02 Score=26.16 Aligned_cols=68 Identities=12% Similarity=0.018 Sum_probs=40.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhc-CCCeEEEEcCCCc--HHHHHHHHHcCC-EEE--EeC-CCHHHHHHHHHHHH
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRL-NIPVTVVMPIVAP--IMKIQACRRYGA-TVI--VEG-ADMKEAKNIALKKG 135 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~--~~~~~~l~~~Ga-~v~--~~~-~~~~~~~~~a~~~~ 135 (269)
...+|+..+|-.|.++|...... |.+++++.....+ +...+.++..|. ++. .++ .+..+..+..++..
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence 34578888888999999887776 5888777654322 223344555553 444 444 44455444444443
No 280
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.87 E-value=84 Score=27.44 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=42.6
Q ss_pred CccEEEeCCC--hHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-HHcCCEE-EEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLG--NHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-RRYGATV-IVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~Ga~v-~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..++ .-|.++|....+.|.+++++-.......+.+.+ +..|..+ +.++ .+.++..+...+..++.+
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG 84 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 3456776654 689999999999999887754322112233333 3456443 3445 556666666666665544
No 281
>PRK06139 short chain dehydrogenase; Provisional
Probab=55.87 E-value=69 Score=29.17 Aligned_cols=85 Identities=16% Similarity=0.088 Sum_probs=47.6
Q ss_pred CeEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 93 PVTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 93 ~~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
+.+++... ..-..-.+.+...|++|+.+..+.+...+...++.+......+.. . ...++ +....+..
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~-~-------Dv~d~---~~v~~~~~ 76 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP-T-------DVTDA---DQVKALAT 76 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE-e-------eCCCH---HHHHHHHH
Confidence 44555543 233455666777899999887665443333333332212222111 0 02233 33456667
Q ss_pred HHHhhcCCCCEEEEecCc
Q psy5622 171 EIVDQVANIDAIVVPVGG 188 (269)
Q Consensus 171 EI~~ql~~~d~vv~p~G~ 188 (269)
++.++++.+|.+|..+|.
T Consensus 77 ~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 77 QAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 777777789999999985
No 282
>PRK08912 hypothetical protein; Provisional
Probab=55.73 E-value=1.3e+02 Score=27.74 Aligned_cols=75 Identities=19% Similarity=0.004 Sum_probs=41.5
Q ss_pred CCCchhhHHHHHHHHhchH--hcCCc-cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 46 VTGSFKERGACYALLMLSE--DQKKK-GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 46 ptGS~K~R~a~~~l~~~~~--~~~~~-~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
+.|....|-+......... ..... .|+..+++..+..++..+-. +-.-.|+++...-..-...++.+|++++.++
T Consensus 62 ~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~ 139 (387)
T PRK08912 62 MMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVR 139 (387)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEe
Confidence 3576666655442211000 01223 57777777887766555432 2223455555444445567789999998765
No 283
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=55.66 E-value=89 Score=27.47 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=34.3
Q ss_pred CccEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
..+++. ..+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++-+.
T Consensus 140 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (324)
T cd08292 140 GQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIGPVV 189 (324)
T ss_pred CCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCCEEE
Confidence 344444 566899999999999999987666553 3455666668885544
No 284
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=55.61 E-value=52 Score=27.49 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=36.6
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH-HHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI-MKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l~~~Ga~v~~~~ 121 (269)
..+|+..+|..|..++......|.+++++....... .....++..|.++..+.
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 467888899999999999888899976555433222 22344556787776644
No 285
>PRK12939 short chain dehydrogenase; Provisional
Probab=55.60 E-value=75 Score=26.73 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=35.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~ 121 (269)
+..+|+..+|.-|.++|....+.|.+++++..... .......++..++++..+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45678888999999999999899998766633211 1122334555676766544
No 286
>PRK08354 putative aminotransferase; Provisional
Probab=55.50 E-value=1.5e+02 Score=26.35 Aligned_cols=55 Identities=13% Similarity=0.005 Sum_probs=36.2
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHH
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKE 126 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~ 126 (269)
.|+..+++..+..+....-.-| -.|+++..+-..-...++.+|++++.++.+.+.
T Consensus 56 ~I~vt~G~~~al~~~~~~~~~g--d~vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~ 110 (311)
T PRK08354 56 PIVITAGITEALYLIGILALRD--RKVIIPRHTYGEYERVARFFAARIIKGPNDPEK 110 (311)
T ss_pred CEEECCCHHHHHHHHHHhhCCC--CeEEEeCCCcHHHHHHHHHcCCEEeecCCCHHH
Confidence 4776777777766554322223 346666666666677888999999988776544
No 287
>PRK07774 short chain dehydrogenase; Provisional
Probab=55.39 E-value=1e+02 Score=26.04 Aligned_cols=72 Identities=21% Similarity=0.146 Sum_probs=43.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH-HHHHHHHHcCCEEEE--eC-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI-MKIQACRRYGATVIV--EG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l~~~Ga~v~~--~~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|--|.+++......|.+++++....... ...+.++..+.++.. ++ .+..+..+...+..++.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3468888889999999999989999887765432221 122334444555543 34 344444444455544443
No 288
>PRK07825 short chain dehydrogenase; Provisional
Probab=55.33 E-value=1.1e+02 Score=26.45 Aligned_cols=68 Identities=13% Similarity=-0.074 Sum_probs=42.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHH-HHHcC-CEEEEeC-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQA-CRRYG-ATVIVEG-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~-l~~~G-a~v~~~~-~~~~~~~~~a~~~~~~~ 138 (269)
...+|+..+|..|.++|......|.+++++..+ +.+.+. .+..+ .+++.++ .+.++..+...++.+..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLD---EALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADL 76 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHc
Confidence 356888888999999999888889986665432 233322 23334 5555556 45555555555555543
No 289
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=55.29 E-value=1.7e+02 Score=26.72 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=33.9
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEE
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATV 117 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 117 (269)
.+++....|..|.+++..|+.+|.+.++.+.. ++.+.+.++.+|++-
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 231 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGATE 231 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCCe
Confidence 44444467999999999999999875554432 456777778899853
No 290
>PTZ00377 alanine aminotransferase; Provisional
Probab=55.29 E-value=1.6e+02 Score=28.20 Aligned_cols=53 Identities=9% Similarity=-0.043 Sum_probs=34.6
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..|+..+++..+..+++.+-..+-.-.|++|...-..-...++.+|++++.++
T Consensus 139 ~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~ 191 (481)
T PTZ00377 139 SDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYY 191 (481)
T ss_pred hhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEE
Confidence 45777777777776665543212223466666555566778888999998775
No 291
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=55.27 E-value=73 Score=27.37 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=42.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHH-HcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACR-RYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~-~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.+++++-. +..+.+.+. .+|.++..+ + .+.++..+..++..++.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r---~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDK---SAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFG 78 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 45688888899999999999999998776533 223333343 345555444 3 344444445555555443
No 292
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=55.22 E-value=48 Score=32.46 Aligned_cols=51 Identities=14% Similarity=0.034 Sum_probs=40.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..+|+.-..|..|.+.+..|+.+|-++++ + +..+.++++.+.+||+.+.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a-~--D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRA-F--DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEE-E--eCCHHHHHHHHHcCCeEEEec
Confidence 56799999999999999999999985332 2 456788999999999965443
No 293
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=55.18 E-value=29 Score=34.15 Aligned_cols=53 Identities=23% Similarity=0.162 Sum_probs=41.0
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC------------------CcHHHHHHHHHcCCEEEE
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV------------------APIMKIQACRRYGATVIV 119 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~------------------~~~~~~~~l~~~Ga~v~~ 119 (269)
..+.|+.-.+|-.|.+.|.+++++|.+++++=... ....+++.++.+|+++..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 35679999999999999999999999977764221 234567778889998764
No 294
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=55.13 E-value=1e+02 Score=25.89 Aligned_cols=69 Identities=9% Similarity=0.006 Sum_probs=42.7
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
..+|+..+|.-|.+++......|.+++++...+.. ......++.+|.++..+. .+.++..+...+..++
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 76 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQH 76 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 35788888999999999988899987765543322 223344566677665544 3444444444444333
No 295
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.91 E-value=80 Score=27.80 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=34.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
..+++...+|..|.+++..|+..|.++++..+ ++.+.+.++.+|++-+.
T Consensus 161 g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 161 GDTVLVQGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 34555556788999999999999998655543 34566667777876544
No 296
>PRK05866 short chain dehydrogenase; Provisional
Probab=54.88 E-value=1.1e+02 Score=27.14 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=47.4
Q ss_pred CeEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 93 PVTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 93 ~~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
+.++++.. +.-..-.+.+...|++|+.+..+.+...+...++.+..+...... .+ ..++. -......
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~-~D-------l~d~~---~v~~~~~ 109 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVP-CD-------LSDLD---AVDALVA 109 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE-cc-------CCCHH---HHHHHHH
Confidence 44555543 233445566677899999887664443333333322222221111 00 22332 2345566
Q ss_pred HHHhhcCCCCEEEEecCcc
Q psy5622 171 EIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 171 EI~~ql~~~d~vv~p~G~G 189 (269)
++.++++.+|.+|..+|.+
T Consensus 110 ~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 110 DVEKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 6777778899999999864
No 297
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=54.87 E-value=1.8e+02 Score=27.13 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=16.2
Q ss_pred EEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622 72 ISASLGNHAQAMCYHGSRLNIPVTVVM 98 (269)
Q Consensus 72 v~~SsGN~g~alA~~a~~~G~~~~ivv 98 (269)
..-.+|..+.+++.+++..|+.+.+++
T Consensus 4 liiG~G~~~~~l~~~~~~~~~~~~~~~ 30 (423)
T TIGR00877 4 LVIGNGGREHALAWKLAQSPLVKYVYV 30 (423)
T ss_pred EEECCChHHHHHHHHHHhCCCccEEEE
Confidence 334555556666666666666555554
No 298
>PRK07063 short chain dehydrogenase; Provisional
Probab=54.86 E-value=1e+02 Score=26.30 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=41.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHH--cCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRR--YGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~--~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|--|.++|......|.+++++...... +...+.++. .+.++..+ + .+.++..+...++.++.+
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 446788888888999999988899987665442211 112223333 35555443 3 344454455555554443
No 299
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=54.52 E-value=88 Score=28.22 Aligned_cols=52 Identities=25% Similarity=0.162 Sum_probs=36.8
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.++..++...+..++..+...+-...|++|......-...++..|.+++.++
T Consensus 70 ~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~ 121 (363)
T PF00155_consen 70 NILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVP 121 (363)
T ss_dssp GEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEE
T ss_pred EEEEecccccchhhhhhcccccccccceecCCccccccccccccCceeeecc
Confidence 6777777666666666655443445567776666666788999999999876
No 300
>PRK06290 aspartate aminotransferase; Provisional
Probab=54.48 E-value=87 Score=29.39 Aligned_cols=51 Identities=20% Similarity=0.060 Sum_probs=31.3
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|+.++++..+..++..+- .+-.-.|++|...-..-...++.+|++++.++
T Consensus 108 ~I~it~Gs~~al~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~ 158 (410)
T PRK06290 108 EVIHSIGSKPALAMLPSCF-INPGDVTLMTVPGYPVTGTHTKYYGGEVYNLP 158 (410)
T ss_pred eEEEccCHHHHHHHHHHHh-CCCCCEEEEeCCCCccHHHHHHHcCCEEEEEe
Confidence 4776666677665554432 22223455555444445667888999999876
No 301
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=54.41 E-value=92 Score=26.55 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=43.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|.-|.+++......|.+++++...... +.-...++..|.++..+ + .+.++..+...++.++.
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 556888888999999999988899987776543211 12233455567666544 4 34444444444444443
No 302
>PRK06101 short chain dehydrogenase; Provisional
Probab=54.37 E-value=99 Score=26.15 Aligned_cols=62 Identities=6% Similarity=-0.018 Sum_probs=39.6
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcC--CEEEEeC-CCHHHHHHHHHH
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYG--ATVIVEG-ADMKEAKNIALK 133 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~G--a~v~~~~-~~~~~~~~~a~~ 133 (269)
..+|+..+|.-|.++|..-...|.+++++... +.+.+.+...+ ...+.++ .+.++..+...+
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 67 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTLAFDVTDHPGTKAALSQ 67 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHh
Confidence 35788889999999999988889997776542 34444444434 3344455 455555544444
No 303
>PRK05876 short chain dehydrogenase; Provisional
Probab=54.34 E-value=1.2e+02 Score=26.55 Aligned_cols=85 Identities=14% Similarity=-0.010 Sum_probs=47.9
Q ss_pred CeEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 93 PVTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 93 ~~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
+.+++... ..-..-.+.+...|++|+.+..+.....+...++........... . ...++ ........
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~-~-------Dv~d~---~~v~~~~~ 75 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVM-C-------DVRHR---EEVTHLAD 75 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEe-C-------CCCCH---HHHHHHHH
Confidence 34445533 233455666777899999887665444444444432211121111 0 02233 33456667
Q ss_pred HHHhhcCCCCEEEEecCc
Q psy5622 171 EIVDQVANIDAIVVPVGG 188 (269)
Q Consensus 171 EI~~ql~~~d~vv~p~G~ 188 (269)
++.++++++|.+|..+|.
T Consensus 76 ~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 777888889999998875
No 304
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=54.32 E-value=93 Score=28.34 Aligned_cols=52 Identities=15% Similarity=-0.060 Sum_probs=34.6
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
..|+..+++..+..++..+-.-| + .|+++.-+-..-...++.+|++++.++-
T Consensus 75 ~~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 75 EWILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred hhEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 45777777777776665442223 3 4556665556667788889999998763
No 305
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=54.18 E-value=99 Score=26.53 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=44.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH--HHHHHHH-HcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI--MKIQACR-RYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~-~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..++.-|.++|......|.+++++...+.+. ...+.++ ..|.++..+ + .+.++..+...++.++.+
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 86 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFD 86 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4567888888899999999999999877654433211 1122333 346666544 4 455666666666655544
No 306
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=54.06 E-value=37 Score=32.36 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=39.2
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEE
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI 118 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 118 (269)
..++++....|.-|..+|..++.+|.++++ + +.++.+....+.+|++++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV-~--d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIV-T--EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEE-E--ECChhhHHHHHhcCCEEc
Confidence 467899999999999999999999997555 3 334567777788998765
No 307
>PRK06500 short chain dehydrogenase; Provisional
Probab=54.06 E-value=1.1e+02 Score=25.71 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=41.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHH-HHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKI-QACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~-~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.+++......|.+++++... ..+. ...+.+|.++..+ + .+.++......++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 456888889999999999999999987665432 2222 2334457776544 3 3444444444444444
No 308
>PRK05717 oxidoreductase; Validated
Probab=53.95 E-value=81 Score=26.90 Aligned_cols=70 Identities=7% Similarity=-0.027 Sum_probs=42.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.+++++-... .......+..+.+++.+ + .+.++..+...++.++.+
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4568888899999999999988998876653221 11122334456555544 3 344444444555555543
No 309
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=53.88 E-value=81 Score=28.46 Aligned_cols=52 Identities=10% Similarity=-0.131 Sum_probs=32.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
...|+..+++..+..++... ++-. .++++..+-..-....+.+|++++.++-
T Consensus 57 ~~~I~it~Gs~~~l~~~~~~--~~~~-~vv~~~P~y~~y~~~~~~~G~~v~~vp~ 108 (332)
T PRK06425 57 KIKVLIGPGLTHFIYRLLSY--INVG-NIIIVEPNFNEYKGYAFTHGIRISALPF 108 (332)
T ss_pred cceEEECCCHHHHHHHHHHH--hCCC-cEEEeCCChHHHHHHHHHcCCeEEEEeC
Confidence 34577777777776666542 3322 3444444455566778889999998863
No 310
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=53.87 E-value=1.2e+02 Score=26.27 Aligned_cols=116 Identities=12% Similarity=-0.091 Sum_probs=58.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH---------------HHcCCEEEEeCCCHHHHHHHHH
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC---------------RRYGATVIVEGADMKEAKNIAL 132 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l---------------~~~Ga~v~~~~~~~~~~~~~a~ 132 (269)
...|+.-.+|.-|..=+..-...|-+++|+.|+-.+..+ ... ..-|+.+++.-.+-.+.-+...
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~-~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~ 103 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL-DLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIR 103 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH-HHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHH
Confidence 345666777776544444444567777777666443321 111 1236666555433344445555
Q ss_pred HHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHH
Q psy5622 133 KKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDI 202 (269)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~ 202 (269)
+.+++.+..+ +. .++|.. ...+.+-++ .-+-+.++++|||..-.+++.+++.
T Consensus 104 ~~a~~~~~lv-n~----------vd~p~~---~dFi~PAiv----~rg~l~IaIST~G~sP~lar~lR~~ 155 (223)
T PRK05562 104 KHCDRLYKLY-ID----------CSDYKK---GLCIIPYQR----STKNFVFALNTKGGSPKTSVFIGEK 155 (223)
T ss_pred HHHHHcCCeE-EE----------cCCccc---CeEEeeeEE----ecCCEEEEEECCCcCcHHHHHHHHH
Confidence 6666654322 21 122221 001111111 1245777777877777777777766
No 311
>PRK10490 sensor protein KdpD; Provisional
Probab=53.79 E-value=1.8e+02 Score=30.51 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=62.0
Q ss_pred EEEeCCChHHH----HHHHHHHhcCCCeEEEE--cCC---CcH-------HHHHHHHHcCCEEEEeCCCHHHHHHHHHHH
Q psy5622 71 VISASLGNHAQ----AMCYHGSRLNIPVTVVM--PIV---API-------MKIQACRRYGATVIVEGADMKEAKNIALKK 134 (269)
Q Consensus 71 vv~~SsGN~g~----alA~~a~~~G~~~~ivv--p~~---~~~-------~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~ 134 (269)
+|+-|++-++. .-+..|.+++-+.+++. +++ .+. ..+++.+.+||+++.+.++ +..+...++
T Consensus 254 LV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~--dva~~i~~~ 331 (895)
T PRK10490 254 LLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP--AEEKAVLRY 331 (895)
T ss_pred EEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC--CHHHHHHHH
Confidence 55555544443 33446777888877654 211 111 1234566799998877653 334455678
Q ss_pred HhhhCCeee-cCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEecC
Q psy5622 135 GAELGLTYI-NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVG 187 (269)
Q Consensus 135 ~~~~~~~~~-~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G 187 (269)
+++.+...+ .+ -.....+....++...+.+..+++|..++|..
T Consensus 332 A~~~~vt~IViG----------~s~~~~~~~~~s~~~~l~r~~~~idi~iv~~~ 375 (895)
T PRK10490 332 AREHNLGKIIIG----------RRASRRWWRRESFADRLARLGPDLDLVIVALD 375 (895)
T ss_pred HHHhCCCEEEEC----------CCCCCCCccCCCHHHHHHHhCCCCCEEEEeCC
Confidence 888875443 22 11111122345888999999999998888743
No 312
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.78 E-value=1e+02 Score=25.66 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=43.0
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHH--HHHHHHHcCCEEEEeCC---CHHHHHHHHHHHHhh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIM--KIQACRRYGATVIVEGA---DMKEAKNIALKKGAE 137 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~--~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~~~~ 137 (269)
+.+|+..+|..|.+++......|.+++++...+.... ..+.++..+.++..+.. +.+...+...++.++
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVER 81 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHH
Confidence 5688888999999999998899998877665543221 22334455666655443 344444444444443
No 313
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=53.77 E-value=1.7e+02 Score=26.44 Aligned_cols=75 Identities=9% Similarity=-0.091 Sum_probs=40.2
Q ss_pred CCCCchhhHHHHHHHHhchHhc---CCc-cEEEeCCChHHHHHHHHHHhcCCC---eEEEEcCCCcHHHHHHHHHcCCEE
Q psy5622 45 QVTGSFKERGACYALLMLSEDQ---KKK-GVISASLGNHAQAMCYHGSRLNIP---VTVVMPIVAPIMKIQACRRYGATV 117 (269)
Q Consensus 45 nptGS~K~R~a~~~l~~~~~~~---~~~-~vv~~SsGN~g~alA~~a~~~G~~---~~ivvp~~~~~~~~~~l~~~Ga~v 117 (269)
.|.|.-..|.+..-.... ..+ ... .|+..+++..+.-++..+- .+-. -.|++|...-..-...++.+|+++
T Consensus 34 ~~~G~~~lr~aia~~~~~-~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~ 111 (350)
T TIGR03537 34 SALGTKALREAISGWFER-RFGVKLDPDAQVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGEP 111 (350)
T ss_pred CCCCCHHHHHHHHHHHHH-HhCCCCCCCCcEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCEE
Confidence 345766777654332211 111 122 5666666666554443322 2211 256666555455566678899999
Q ss_pred EEeC
Q psy5622 118 IVEG 121 (269)
Q Consensus 118 ~~~~ 121 (269)
+.++
T Consensus 112 ~~v~ 115 (350)
T TIGR03537 112 TAVK 115 (350)
T ss_pred EEcc
Confidence 9875
No 314
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=53.76 E-value=1.1e+02 Score=28.28 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=33.0
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
..|+..+++..+..++..+- .+-.-.|+++...-..-...++.+|++++.++.
T Consensus 92 ~~i~it~G~~~al~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 144 (391)
T PRK07309 92 NEILVTIGATEALSASLTAI-LEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDT 144 (391)
T ss_pred CcEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEEec
Confidence 45777778788776665543 222234555544333345677889999988763
No 315
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.75 E-value=96 Score=27.08 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=9.7
Q ss_pred CCcEEEEEcCCCCh
Q psy5622 211 LEIVDQGVESDRCA 224 (269)
Q Consensus 211 ~~~~vigVe~~~~~ 224 (269)
..+++..|.|-.-.
T Consensus 183 ~gIrVn~v~PG~v~ 196 (272)
T PRK08159 183 KNIRVNAISAGPIK 196 (272)
T ss_pred cCeEEEEeecCCcC
Confidence 45888888876543
No 316
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.75 E-value=1.5e+02 Score=25.71 Aligned_cols=58 Identities=10% Similarity=-0.141 Sum_probs=33.2
Q ss_pred HHHHHHhhcC-CCCE-EEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC--hHHHHHHHcCC
Q psy5622 168 VGLEIVDQVA-NIDA-IVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC--ASFSTAIKHGK 234 (269)
Q Consensus 168 ~~~EI~~ql~-~~d~-vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~--~~~~~~~~~g~ 234 (269)
+.-||.+-+. ..|. =+.|++.+| ....+.++.- -|.++++.+-=-.. ..+..+++.|-
T Consensus 121 TpsEi~~A~~~Ga~~vKlFPA~~~G--~~~ikal~~p-------~p~i~~~ptGGV~~~~~n~~~yl~aGa 182 (222)
T PRK07114 121 SLSEIGYAEELGCEIVKLFPGSVYG--PGFVKAIKGP-------MPWTKIMPTGGVEPTEENLKKWFGAGV 182 (222)
T ss_pred CHHHHHHHHHCCCCEEEECcccccC--HHHHHHHhcc-------CCCCeEEeCCCCCcchhcHHHHHhCCC
Confidence 4467776665 4454 477877666 2334444443 46777776443333 35777787763
No 317
>PRK07677 short chain dehydrogenase; Provisional
Probab=53.71 E-value=1e+02 Score=26.27 Aligned_cols=71 Identities=8% Similarity=0.077 Sum_probs=42.3
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+..+|.-|.++|......|.+++++-..... +.....++..+.++..+ + .+.++..+...+..++.+
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 45788888899999999988999976665432211 11223344456666544 4 344455555555544433
No 318
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=53.67 E-value=86 Score=25.43 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=39.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
...++...+|+.|...+..+..+|.+++++ +..+.+++..+..++..+.++
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEET
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEc
Confidence 456788889999999999999999986554 234667788888999888774
No 319
>PRK07683 aminotransferase A; Validated
Probab=53.67 E-value=92 Score=28.77 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=32.1
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
.|+..+++..+..++..+- .+-.-.|++|...-..-....+.+|++++.++.
T Consensus 91 ~I~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~ 142 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTI-LEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDT 142 (387)
T ss_pred cEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCccchHHHHHHcCCEEEEeec
Confidence 5666666676666554432 222345666665544455667789999988763
No 320
>PRK07069 short chain dehydrogenase; Validated
Probab=53.55 E-value=92 Score=26.24 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=25.1
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPI 100 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 100 (269)
.+|+..+|..|.++|..-.+.|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678888899999999888889987776644
No 321
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=53.54 E-value=1.9e+02 Score=27.29 Aligned_cols=53 Identities=23% Similarity=0.160 Sum_probs=36.4
Q ss_pred ccEEEeCCC-hHHHHHHHHHHhcCCCeEEEEcC------CCcHHHHHHHHHcCCE-EEEeCC
Q psy5622 69 KGVISASLG-NHAQAMCYHGSRLNIPVTVVMPI------VAPIMKIQACRRYGAT-VIVEGA 122 (269)
Q Consensus 69 ~~vv~~SsG-N~g~alA~~a~~~G~~~~ivvp~------~~~~~~~~~l~~~Ga~-v~~~~~ 122 (269)
+.++.+|+| .|..++-+.-...|.+++.|+-+ +....+.+.++ +||. .+.++.
T Consensus 6 kvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA~~-~Ga~~~~viD~ 66 (403)
T COG0137 6 KVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALE-LGAEEAYVIDA 66 (403)
T ss_pred EEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHHHH-hCCceEEEeec
Confidence 456677777 78889999999999998888732 23344455554 7888 445553
No 322
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=53.35 E-value=89 Score=27.51 Aligned_cols=121 Identities=10% Similarity=0.040 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe-----CCCHHHHHHHHHHHHhh--hCCeeecCCCCCCcccc
Q psy5622 82 AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE-----GADMKEAKNIALKKGAE--LGLTYINGYLSSGLSVL 154 (269)
Q Consensus 82 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~-----~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~ 154 (269)
+++.+-++.|.++.+ +.-+.--.+++.+.-+--+|+.- .++ | +.-+.+-++ ....|+.+ ++-.
T Consensus 22 nig~aLA~~GkKv~l-iD~DiGLRNLDlimGlE~RiVYd~vdVi~g~---~-~l~QALIkDKr~~nL~lLP-----AsQt 91 (272)
T COG2894 22 NIGTALAQLGKKVVL-IDFDIGLRNLDLIMGLENRIVYDLVDVIEGE---A-TLNQALIKDKRLENLFLLP-----ASQT 91 (272)
T ss_pred HHHHHHHHcCCeEEE-EecCcCchhhhhhhcccceeeeeehhhhcCc---c-chhhHhhccccCCceEecc-----cccc
Confidence 445555567777554 56666666777775444444421 121 1 111222222 12333333 0101
Q ss_pred CCCCcchhccchhHHHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh
Q psy5622 155 GYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA 224 (269)
Q Consensus 155 g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~ 224 (269)
.-.|....++.+.+..|+.+ ..+|+|+|= +.+||-+||+.... .-.-.++.+.|+-|.
T Consensus 92 rdKdalt~E~v~~vv~eL~~--~~fDyIi~D-----sPAGIE~G~~~A~~-----~Ad~AiVVtnPEvSs 149 (272)
T COG2894 92 RDKDALTPEGVKKVVNELKA--MDFDYIIID-----SPAGIEQGFKNAVY-----FADEAIVVTNPEVSS 149 (272)
T ss_pred cCcccCCHHHHHHHHHHHHh--cCCCEEEec-----CcchHHHHHHhhhh-----ccceEEEEcCCCccc
Confidence 11244456777777777765 579999984 46788888876631 225567777777653
No 323
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.35 E-value=1e+02 Score=25.99 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=41.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|.-|.++|......|.++++......+ ........++.++..+ + .+.++..+...+..+.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSED-AAEALADELGDRAIALQADVTDREQVQAMFATATEH 77 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHH-HHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456888999999999999988899988775543322 1122233345555443 4 3444444444444433
No 324
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=53.31 E-value=1e+02 Score=28.25 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHHHhchHhcCCc-cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHH-cCCEEEE
Q psy5622 53 RGACYALLMLSEDQKKK-GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRR-YGATVIV 119 (269)
Q Consensus 53 R~a~~~l~~~~~~~~~~-~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga~v~~ 119 (269)
..|++.|.+..+.+... -+|++.+|-.|.-+.-.|+..|.+++-+.. +++|.+.+.. +|-+..+
T Consensus 136 ~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 136 LTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 56677776654444344 467788999998888899999999888876 5688888887 7776654
No 325
>PRK07985 oxidoreductase; Provisional
Probab=53.26 E-value=97 Score=27.41 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=44.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-c--HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-P--IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~--~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.+++++-.... . +.....++..|.++..+ + .+.++..+...+..++.+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 127 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALG 127 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45688888899999999999999999876543221 1 11222345567776544 4 344455555555554443
No 326
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=53.25 E-value=1.1e+02 Score=26.51 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=46.2
Q ss_pred CeEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 93 PVTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 93 ~~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
+.+++... ..-..-.+.+...|++|+.+..+.+...+...++.+..+.....+ . ...++ ........
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~-------Dl~~~---~~v~~~~~ 79 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVK-A-------DVLDK---ESLEQARQ 79 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE-C-------CCCCH---HHHHHHHH
Confidence 34444433 233445566677899999887665444444444433222211111 0 01222 23344556
Q ss_pred HHHhhcCCCCEEEEecCc
Q psy5622 171 EIVDQVANIDAIVVPVGG 188 (269)
Q Consensus 171 EI~~ql~~~d~vv~p~G~ 188 (269)
++.++++.+|.+|..+|.
T Consensus 80 ~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 80 QILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 677777789999998874
No 327
>PRK07677 short chain dehydrogenase; Provisional
Probab=53.14 E-value=1.2e+02 Score=25.67 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=42.4
Q ss_pred cHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecC-CCCCCccccCCCCcchhccchhHHHHHHhhcCCCCE
Q psy5622 103 PIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING-YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDA 181 (269)
Q Consensus 103 ~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~ 181 (269)
-..-.+.+...|++|+.+..+.+...+...++.+..+.....+ . ..++ +.......++.++++.+|.
T Consensus 14 G~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D---------~~~~---~~~~~~~~~~~~~~~~id~ 81 (252)
T PRK07677 14 GKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMD---------VRNP---EDVQKMVEQIDEKFGRIDA 81 (252)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEec---------CCCH---HHHHHHHHHHHHHhCCccE
Confidence 3445556677899999887664444444333433222222111 0 1232 3345566677777788999
Q ss_pred EEEecCc
Q psy5622 182 IVVPVGG 188 (269)
Q Consensus 182 vv~p~G~ 188 (269)
+|..+|.
T Consensus 82 lI~~ag~ 88 (252)
T PRK07677 82 LINNAAG 88 (252)
T ss_pred EEECCCC
Confidence 9988874
No 328
>PRK06701 short chain dehydrogenase; Provisional
Probab=53.13 E-value=1.3e+02 Score=26.59 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=44.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|.-|.++|....+.|.+++++...... +.....++..|.++..+. .+.++..+...+..++
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346788888999999999988899998776544322 233445566677775543 3334444444444433
No 329
>PRK07791 short chain dehydrogenase; Provisional
Probab=52.90 E-value=1e+02 Score=27.14 Aligned_cols=86 Identities=20% Similarity=0.117 Sum_probs=46.7
Q ss_pred CeEEEEcCC--CcHHHHHHHHHcCCEEEEeCCCH---------HHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcch
Q psy5622 93 PVTVVMPIV--APIMKIQACRRYGATVIVEGADM---------KEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDI 161 (269)
Q Consensus 93 ~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~ 161 (269)
+.+++.... .-..-.+.+...|++|+.+..+. +...+.+.++.+..+...... . |...
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~-Dv~~ 75 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANG----------D-DIAD 75 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEe----------C-CCCC
Confidence 445555433 23344556667899998875332 333333444433222222222 1 2222
Q ss_pred hccchhHHHHHHhhcCCCCEEEEecCcc
Q psy5622 162 MAGQGTVGLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 162 ~~g~~t~~~EI~~ql~~~d~vv~p~G~G 189 (269)
.+.......++.++++.+|.+|..+|..
T Consensus 76 ~~~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 76 WDGAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 2334566777777788899999988853
No 330
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=52.75 E-value=97 Score=26.42 Aligned_cols=70 Identities=9% Similarity=0.011 Sum_probs=42.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|--|.++|......|.+++++...... +...+.++..+.++..+. .+.++..+...++.++
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456888888999999999988889987665443211 112234455677776554 3334444444444444
No 331
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=52.72 E-value=1e+02 Score=27.33 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=35.7
Q ss_pred ccEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..++. ..+|..|.++...|+.+|.+++++.+ ++.|++.++.+|++-+...
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 33443 57788898888899999997555433 4567788888999765543
No 332
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=52.71 E-value=2.2e+02 Score=27.49 Aligned_cols=66 Identities=9% Similarity=-0.104 Sum_probs=43.4
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcC-CCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHH
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPI-VAPIMKIQACRRYGATVIVEG-ADMKEAKNIAL 132 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~ 132 (269)
..++++.+.+|....+++.+.+.+|+++++.--. ...+...+.++.++...+.++ .+..+..+..+
T Consensus 334 ~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~~~d~~el~~~i~ 401 (466)
T TIGR01282 334 EGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGYEFAHNDDYERTTKYMKDGTLIYDDVTHYEFEEFVE 401 (466)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHH
Confidence 4567887888877888888889999999755322 234444555666676666555 56666554443
No 333
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=52.70 E-value=70 Score=27.12 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=8.0
Q ss_pred CcEEEEEcCCCC
Q psy5622 212 EIVDQGVESDRC 223 (269)
Q Consensus 212 ~~~vigVe~~~~ 223 (269)
.+|+-+|.|-.-
T Consensus 170 gIrVN~V~pG~i 181 (241)
T PF13561_consen 170 GIRVNAVSPGPI 181 (241)
T ss_dssp TEEEEEEEESSB
T ss_pred Ceeeeeecccce
Confidence 677777776543
No 334
>PRK07062 short chain dehydrogenase; Provisional
Probab=52.60 E-value=1.2e+02 Score=25.93 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=43.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHH-HHHHHHH-c-CCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIM-KIQACRR-Y-GATVIVE--G-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~l~~-~-Ga~v~~~--~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.+++++........ ..+.++. + +.++..+ + .+.++..+...++.++.+
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 45688888899999999999999999777655322111 1222322 3 3466543 4 455555555555555444
No 335
>PRK05826 pyruvate kinase; Provisional
Probab=52.24 E-value=2.1e+02 Score=27.68 Aligned_cols=125 Identities=12% Similarity=0.059 Sum_probs=72.7
Q ss_pred HHHHHHhcCCCeEEE-----------EcCCCcHHHHHHHHHcCCEEEEeC------CCHHHHHHHHHHHHhhhCCeeecC
Q psy5622 83 MCYHGSRLNIPVTVV-----------MPIVAPIMKIQACRRYGATVIVEG------ADMKEAKNIALKKGAELGLTYING 145 (269)
Q Consensus 83 lA~~a~~~G~~~~iv-----------vp~~~~~~~~~~l~~~Ga~v~~~~------~~~~~~~~~a~~~~~~~~~~~~~~ 145 (269)
+...|++.|.++++- .|..+...-+...-..|++-+... ....++++...+++++...++...
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 344688899998874 233333334444555799988653 345688887777665433211111
Q ss_pred CCCCCccccCCCC--cchhccchhHHHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC
Q psy5622 146 YLSSGLSVLGYDH--PDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC 223 (269)
Q Consensus 146 ~~~~~~~~~g~~n--~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~ 223 (269)
.+.+. ..+ ..........+.++..++++.+.||+..-+|.++..+++ + .|...|+++.+...
T Consensus 344 ~~~~~-----~~~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk----~-------RP~~pI~~~t~~~~ 407 (465)
T PRK05826 344 LSKHR-----LDRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISR----F-------RPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhh-----ccccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHh----h-------CCCCCEEEEcCCHH
Confidence 00000 000 011233344555666666547789999999998665543 4 78899999988764
No 336
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=52.03 E-value=1.2e+02 Score=25.64 Aligned_cols=70 Identities=9% Similarity=-0.011 Sum_probs=43.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH-HHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI-MKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.+++..-...|.+++++.....+. .....++..+.++..+ + .+.++..+...++.++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567888899999999999888899887776543222 2233455567776544 3 3444444444444443
No 337
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=51.98 E-value=88 Score=29.39 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=48.2
Q ss_pred hcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 65 DQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 65 ~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
--+.+..+..+||..+..+|+-+-..|=.-.|++|+-+-..-.+.+...||+.++++-
T Consensus 46 ~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDi 103 (374)
T COG0399 46 YLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDI 103 (374)
T ss_pred HhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEec
Confidence 3456788889999998888887555777778999998888888899999999999874
No 338
>PRK07774 short chain dehydrogenase; Provisional
Probab=51.88 E-value=1.4e+02 Score=25.15 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=47.1
Q ss_pred CeEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCC-eee-cCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGL-TYI-NGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+.+++... ..-..-.+.+...|++|+.+..+.....+...++.++... .++ .+ ..++ ......
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D----------l~~~---~~~~~~ 73 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVD----------VSDP---DSAKAM 73 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC----------CCCH---HHHHHH
Confidence 34555543 2344556667778999998876543333333333332211 121 11 1222 234556
Q ss_pred HHHHHhhcCCCCEEEEecCcc
Q psy5622 169 GLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G~G 189 (269)
..++.++++.+|.||..+|..
T Consensus 74 ~~~~~~~~~~id~vi~~ag~~ 94 (250)
T PRK07774 74 ADATVSAFGGIDYLVNNAAIY 94 (250)
T ss_pred HHHHHHHhCCCCEEEECCCCc
Confidence 667777888899999999853
No 339
>PLN02253 xanthoxin dehydrogenase
Probab=51.87 E-value=93 Score=26.95 Aligned_cols=71 Identities=7% Similarity=-0.076 Sum_probs=41.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHH-HHHHHHcCCEEE--EeC-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMK-IQACRRYGATVI--VEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~-~~~l~~~Ga~v~--~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+|.-|.++|......|.+++++-.......+ ...+. .+.++. .++ .+.++..+...++.++.+
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG-GEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc-CCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 456888999999999999988899987776433211111 11121 133443 444 455555555555555443
No 340
>PRK06057 short chain dehydrogenase; Provisional
Probab=51.87 E-value=1.3e+02 Score=25.60 Aligned_cols=67 Identities=12% Similarity=-0.024 Sum_probs=41.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHH-HHHHcCCEEEEeC-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQ-ACRRYGATVIVEG-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~-~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|.-|.+++......|.+++++... +.+.+ .....+...+.++ .+.++..+...+..+.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDID---PEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 456888888999999999988899987776432 22222 2233455566666 4555544444444433
No 341
>PRK07890 short chain dehydrogenase; Provisional
Probab=51.87 E-value=1e+02 Score=26.19 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=42.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|.-|.++|......|.+++++-..... +.-...++..|.++..+. .+.++..+...+..++.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 456888899999999999999999987766543211 112233444566665443 23333333334444443
No 342
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=51.76 E-value=97 Score=28.25 Aligned_cols=52 Identities=15% Similarity=0.017 Sum_probs=34.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.++++...+|-.|.+++.+|+..|.+++++... ++.+...++.+|++.+...
T Consensus 181 g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~i~~ 232 (357)
T PLN02514 181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDYLVS 232 (357)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEEecC
Confidence 445555567889999999999999986554432 2233345567999754433
No 343
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=51.71 E-value=1.7e+02 Score=25.78 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=33.7
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.+++...+|..|.+++..|+.+|.++++..+ ++.+.+.++.+|++-+..
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLN 215 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEc
Confidence 3444445688899999999999988544433 455667778888755443
No 344
>PRK06482 short chain dehydrogenase; Provisional
Probab=51.66 E-value=77 Score=27.40 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=40.2
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHH-HcCCEEE--EeC-CCHHHHHHHHHHHHhh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACR-RYGATVI--VEG-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~-~~Ga~v~--~~~-~~~~~~~~~a~~~~~~ 137 (269)
..+|+..+|.-|.+++......|.+++++... +.++..++ ..+.++. .++ .+.++..+...+..++
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR---PDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAA 73 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45788889999999999988899988777653 23333332 2344444 344 3444444444444333
No 345
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.58 E-value=97 Score=26.10 Aligned_cols=69 Identities=14% Similarity=0.031 Sum_probs=43.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGA 136 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~ 136 (269)
...+|+..+|--|.+++......|.++++....... ......++..|.++..+ + .+.++..+...++.+
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 456788888999999999988999987765533211 23345566677776544 3 333343334444433
No 346
>PRK06180 short chain dehydrogenase; Provisional
Probab=51.44 E-value=86 Score=27.24 Aligned_cols=67 Identities=9% Similarity=0.002 Sum_probs=40.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHH-HcCCEEEE--eC-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACR-RYGATVIV--EG-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~-~~Ga~v~~--~~-~~~~~~~~~a~~~~~~ 137 (269)
...+|+..+|..|.+++....+.|.+++++... +.+...+. ..+.++.. .+ .+.+...+..++..+.
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 75 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRS---EAARADFEALHPDRALARLLDVTDFDAIDAVVADAEAT 75 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC---HHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHH
Confidence 346888889999999999998899997776543 23333333 23444443 34 3444444444444433
No 347
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.32 E-value=1.4e+02 Score=25.95 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=49.4
Q ss_pred CeEEEEcC----CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPI----VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~----~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
++.++... +.-..-.+.+...|++|+.+..+.. ..+..+++.++.+.....+ . |....+....+
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~-~~~~~~~~~~~~g~~~~~~----------~-Dv~d~~~v~~~ 75 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEA-LGKRVKPLAESLGSDFVLP----------C-DVEDIASVDAV 75 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchH-HHHHHHHHHHhcCCceEEe----------C-CCCCHHHHHHH
Confidence 55666543 3445566677789999998865422 2223344444333211111 1 22222345677
Q ss_pred HHHHHhhcCCCCEEEEecCcc
Q psy5622 169 GLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G~G 189 (269)
..++.++++.+|.+|..+|.+
T Consensus 76 ~~~~~~~~g~iD~lVnnAG~~ 96 (271)
T PRK06505 76 FEALEKKWGKLDFVVHAIGFS 96 (271)
T ss_pred HHHHHHHhCCCCEEEECCccC
Confidence 778888888999999999864
No 348
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=51.27 E-value=1.4e+02 Score=26.60 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=32.5
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCE
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGAT 116 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 116 (269)
++++....|..|.++...|+.+|++++++.. +..+.+.++.+|++
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 211 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGAV 211 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCCC
Confidence 4444433789999999999999998766544 34566777788984
No 349
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=51.22 E-value=68 Score=28.91 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=36.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++++....|..|.++...|+.+|.+.++.+.. ++.|+..++.+|++-+.
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQTF 210 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceEe
Confidence 445555567999999999999999985554432 45677778889986544
No 350
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=51.22 E-value=80 Score=27.75 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=35.0
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.+|...+|..|.+++..|+.+|.+++++.+ ++.+++.++.+|++-+..
T Consensus 150 vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 197 (325)
T cd05280 150 VLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEVLD 197 (325)
T ss_pred EEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEEc
Confidence 345556699999999999999998555444 346777778899865443
No 351
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=51.21 E-value=1.5e+02 Score=25.12 Aligned_cols=70 Identities=16% Similarity=0.042 Sum_probs=41.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.++|......|.+++++...... ..-...++..|.++..+ + .+..+..+...+..++
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 456788888999999999888889987776543211 12233345566555443 3 3444444444444333
No 352
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=51.19 E-value=85 Score=27.97 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=33.1
Q ss_pred ccEEEeCCChHHHHHHHHHHhcC-CCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLN-IPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G-~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
++++...+|..|.+++..|+.+| .+++++.+ ++.+.+.++.+|++-+.
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~~ 217 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHVL 217 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEEE
Confidence 44444346669999999999999 77665543 34567777889975443
No 353
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=51.18 E-value=67 Score=28.78 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=35.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++++....|..|.++...|+.+|.+.++++ +.++.+...++.+|++.+.
T Consensus 164 g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 3444445578999999999999998644444 3456677788889986544
No 354
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=51.02 E-value=2.1e+02 Score=26.70 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=38.9
Q ss_pred EEEeCCC---CCCCchhhHHHHHHH--HhchH-hcCCccEEEeCCCh--HHHHHHHHHHhcCCCeEEEEcCCC
Q psy5622 38 FLKKDFF---QVTGSFKERGACYAL--LMLSE-DQKKKGVISASLGN--HAQAMCYHGSRLNIPVTVVMPIVA 102 (269)
Q Consensus 38 ~~K~E~~---nptGS~K~R~a~~~l--~~~~~-~~~~~~vv~~SsGN--~g~alA~~a~~~G~~~~ivvp~~~ 102 (269)
++|++.. ||.-++++|....+- .++.+ .++.+.++..-++. -...-|..++..|.+++.+.|...
T Consensus 157 ~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~~~~~ 229 (364)
T cd08210 157 IIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLIAPGLT 229 (364)
T ss_pred eeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 6777753 567999999754432 23321 22334444433332 344557778999999988877653
No 355
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=50.89 E-value=75 Score=28.97 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=37.6
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH--HHHH----HHHHcCCEEEEeCC
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI--MKIQ----ACRRYGATVIVEGA 122 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~----~l~~~Ga~v~~~~~ 122 (269)
..+.-+.|-+.|+-.+|+++|+++.+..|++..+ .-.. ..+..|+++..+..
T Consensus 157 a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 157 AYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred EEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 3445557899999999999999999999997433 2122 22345888887764
No 356
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=50.88 E-value=90 Score=30.04 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=25.5
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPI 100 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 100 (269)
+.|..+..|-.+.-++.+|+++|++++++.++
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~ 34 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGIRSVAIYSE 34 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence 35677788888899999999999988877543
No 357
>PRK07102 short chain dehydrogenase; Provisional
Probab=50.86 E-value=1.1e+02 Score=25.77 Aligned_cols=68 Identities=15% Similarity=0.012 Sum_probs=40.4
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH-HHHHHHH-HcCCEEEEeC---CCHHHHHHHHHHHHh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI-MKIQACR-RYGATVIVEG---ADMKEAKNIALKKGA 136 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l~-~~Ga~v~~~~---~~~~~~~~~a~~~~~ 136 (269)
+.+|+..+|.-|.+++......|.+++++....... .....++ ..+.++..+. .+..+..+...+..+
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPA 75 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 357888889999999999999999877765433111 1122222 2355665544 344444444444433
No 358
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=50.86 E-value=1.3e+02 Score=24.92 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=35.0
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG 121 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 121 (269)
+|+..+|-.|..+|......|.+++++.....+ ......++..|+++..+.
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 54 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVV 54 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEE
Confidence 678888999999999888889987666543311 223345666787776543
No 359
>PRK07454 short chain dehydrogenase; Provisional
Probab=50.74 E-value=1.5e+02 Score=24.86 Aligned_cols=84 Identities=11% Similarity=0.058 Sum_probs=47.0
Q ss_pred CeEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCe-ee-cCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLT-YI-NGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+.+++... ..-..-.+.+...|.+|+.+..+.++..+...++.+..+.. ++ .+ ..++. .....
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D----------~~~~~---~~~~~ 73 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSID----------LSNPE---AIAPG 73 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEcc----------CCCHH---HHHHH
Confidence 45555543 23344566667789999988866554444333333222222 22 11 12332 23445
Q ss_pred HHHHHhhcCCCCEEEEecCcc
Q psy5622 169 GLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G~G 189 (269)
..++.+.++++|.+|..+|..
T Consensus 74 ~~~~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 74 IAELLEQFGCPDVLINNAGMA 94 (241)
T ss_pred HHHHHHHcCCCCEEEECCCcc
Confidence 566667777899999998853
No 360
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=50.64 E-value=68 Score=29.76 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=34.6
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
+|...+|..|.+++..|+.+|.+.+++.+ ++.+.+.++.+|+..+.-
T Consensus 194 lV~Ga~g~vG~~ai~~ak~~G~~vi~~~~---~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 194 LIWGAAGGLGSYATQLARAGGGNPVAVVS---SPEKAEYCRELGAEAVID 240 (398)
T ss_pred EEEcCCcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCCEEec
Confidence 45555699999999999999998655432 456777788899866543
No 361
>PRK06924 short chain dehydrogenase; Provisional
Probab=50.52 E-value=88 Score=26.47 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=40.4
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE--eC-CCHHHHHHHHHHHHh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV--EG-ADMKEAKNIALKKGA 136 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~--~~-~~~~~~~~~a~~~~~ 136 (269)
..+|+..+|.-|.++|......|.+++++.... .+.........+.+++. ++ .+.++..+..++..+
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE-NKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILS 72 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc-hHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 357888889999999999888899877765432 12222223334555543 44 344555555544443
No 362
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=50.52 E-value=1.1e+02 Score=27.81 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=33.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
...|+..+++..+..++..+ +. +-.|+++...-..-...++..|++++.++
T Consensus 71 ~~~i~it~Ga~~~l~~~~~~--~~-~~~v~i~~P~y~~~~~~~~~~g~~~~~~~ 121 (354)
T PRK06358 71 LENVILGNGATELIFNIVKV--TK-PKKVLILAPTFAEYERALKAFDAEIEYAE 121 (354)
T ss_pred hhhEEECCCHHHHHHHHHHH--hC-CCcEEEecCChHHHHHHHHHcCCeeEEEe
Confidence 34577667767666655544 32 23566666655566677788999998875
No 363
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=50.41 E-value=63 Score=30.80 Aligned_cols=52 Identities=21% Similarity=0.186 Sum_probs=40.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC-----CcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV-----APIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-----~~~~~~~~l~~~Ga~v~~ 119 (269)
.+.++.-.+||.|.-+|..+.++|.+++++.... .....++.++..|.+++.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 4679999999999999999999999998887543 223334566777877764
No 364
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=50.37 E-value=98 Score=27.68 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=34.9
Q ss_pred ccE-EEeCCChHHHHHHHHHHhcCC-CeEEEEcCCCcHHHHHHHHH-cCCEEEEeC
Q psy5622 69 KGV-ISASLGNHAQAMCYHGSRLNI-PVTVVMPIVAPIMKIQACRR-YGATVIVEG 121 (269)
Q Consensus 69 ~~v-v~~SsGN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~l~~-~Ga~v~~~~ 121 (269)
++| |...+|..|.++...|+.+|. ++++..+ ++.|.+.++. +|++-+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 455 445569999999999999998 5555443 3567777765 999765443
No 365
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=50.34 E-value=1.5e+02 Score=24.95 Aligned_cols=71 Identities=14% Similarity=0.027 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCC-e-ee-cCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCC
Q psy5622 104 IMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGL-T-YI-NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANID 180 (269)
Q Consensus 104 ~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~-~-~~-~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d 180 (269)
..-.+.+...|++|+.+..+.....+...++.+ .+. . ++ -+ ..++ ........++.++++.+|
T Consensus 14 ~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~D----------l~~~---~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 14 KGIAERLAKDGFAVAVADLNEETAKETAKEINQ-AGGKAVAYKLD----------VSDK---DQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEEcC----------CCCH---HHHHHHHHHHHHHcCCCC
Confidence 445556777899999887654433333333332 221 1 11 11 2233 234456677777888899
Q ss_pred EEEEecCc
Q psy5622 181 AIVVPVGG 188 (269)
Q Consensus 181 ~vv~p~G~ 188 (269)
.+|..+|.
T Consensus 80 ~vi~~ag~ 87 (254)
T TIGR02415 80 VMVNNAGV 87 (254)
T ss_pred EEEECCCc
Confidence 99998875
No 366
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=50.33 E-value=1.9e+02 Score=25.96 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=36.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.++++...+|..|.+++..|+.+|.+.++++. .++.+.+.++.+|++.+..
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLD 223 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEC
Confidence 34555545789999999999999995444443 3556777778899976554
No 367
>PRK07775 short chain dehydrogenase; Provisional
Probab=50.28 E-value=1.2e+02 Score=26.21 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=42.3
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGA 136 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~ 136 (269)
+..+|+..+|..|.+++......|.+++++...... ..-...++..|.++..+. .+.++..+...+..+
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEE 83 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 356788888999999999988889987666543211 111233555677776543 344444444444433
No 368
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.11 E-value=1.3e+02 Score=25.76 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=0.0
Q ss_pred CeEEEEcCC----CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPIV----APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~~----~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+..++.... .-..-.+.+...|++|+.+..+ .+..+...++.++.+.....+ -|....+.....
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~-~~~~~~~~~~~~~~~~~~~~~-----------~D~~~~~~v~~~ 78 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLN-DKARPYVEPLAEELDAPIFLP-----------LDVREPGQLEAV 78 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCC-hhhHHHHHHHHHhhccceEEe-----------cCcCCHHHHHHH
Q ss_pred HHHHHhhcCCCCEEEEecC
Q psy5622 169 GLEIVDQVANIDAIVVPVG 187 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G 187 (269)
..++.++++.+|.+|..+|
T Consensus 79 ~~~~~~~~g~ld~lv~nAg 97 (258)
T PRK07533 79 FARIAEEWGRLDFLLHSIA 97 (258)
T ss_pred HHHHHHHcCCCCEEEEcCc
No 369
>PRK08251 short chain dehydrogenase; Provisional
Probab=50.06 E-value=1.2e+02 Score=25.52 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=40.8
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHH-HHHHHHHc--CCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIM-KIQACRRY--GATVIVEG---ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~l~~~--Ga~v~~~~---~~~~~~~~~a~~~~~~~ 138 (269)
..+|+..+|..|.++|....+.|.++++......... ....+... +.++..+. .+.++..+...++.++.
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678888999999999998888987666554321111 11222222 66776554 34444444445544443
No 370
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=50.02 E-value=1.3e+02 Score=27.75 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=37.1
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.+.++..++|..|..+++.+...+-.-.|++|..+-..-...++..|++++.++
T Consensus 46 ~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d 99 (375)
T PRK11706 46 SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVD 99 (375)
T ss_pred CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEe
Confidence 356777778877766655443333334677777766666778888999998876
No 371
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=50.01 E-value=1.2e+02 Score=23.43 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=33.6
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEE-cCCCcHHH----HHHHHHcCCEEEEeCC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVM-PIVAPIMK----IQACRRYGATVIVEGA 122 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivv-p~~~~~~~----~~~l~~~Ga~v~~~~~ 122 (269)
.+++..+|..|.+++......|...++++ ....+... .+.++..|.++..+..
T Consensus 3 ~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 3 YLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 46777888899999988888887544444 32222111 3556667888765543
No 372
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.96 E-value=1.4e+02 Score=26.21 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=41.9
Q ss_pred ccEEEeCC--ChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-HHcCCE-EEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISASL--GNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-RRYGAT-VIVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~Ga~-v~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+..+ +--|.++|....+.|.++++.-.......+++.+ +.+|.+ .+.++ .+.++..+...++.++.+
T Consensus 7 ~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 7 KGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 44666544 4678888888888899877654332112334444 344544 34455 566666666666666554
No 373
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=49.84 E-value=80 Score=27.84 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=35.4
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
+|...+|..|.+++..|+.+|.+++++.. ++.|.+.++.+|++-+..
T Consensus 151 lI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~~ 197 (324)
T cd08288 151 LVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEIID 197 (324)
T ss_pred EEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEEE
Confidence 44455699999999999999998666543 446777888899855443
No 374
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=49.83 E-value=1.4e+02 Score=25.66 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=24.5
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
.+|+..+|.-|.+++......|.++++...
T Consensus 4 ~lITGas~gIG~~~a~~l~~~G~~V~~~~~ 33 (267)
T TIGR02685 4 AVVTGAAKRIGSSIAVALHQEGYRVVLHYH 33 (267)
T ss_pred EEEeCCCCcHHHHHHHHHHhCCCeEEEEcC
Confidence 477888888999999998889998776543
No 375
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=49.76 E-value=2e+02 Score=26.24 Aligned_cols=53 Identities=15% Similarity=-0.032 Sum_probs=30.8
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
..|+..+++..+..+...+- ..-.-.|+++...-..-...++.+|.+++.++.
T Consensus 89 ~~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~ 141 (371)
T PRK05166 89 DRIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTV 141 (371)
T ss_pred HHEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeec
Confidence 45666666666555444332 222234455554444556677889999988763
No 376
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.66 E-value=1.4e+02 Score=25.39 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=42.1
Q ss_pred ccEEEeCC--ChHHHHHHHHHHhcCCCeEEEEcCCC---------cHH---HHHHHHHcCCEEEEeC---CCHHHHHHHH
Q psy5622 69 KGVISASL--GNHAQAMCYHGSRLNIPVTVVMPIVA---------PIM---KIQACRRYGATVIVEG---ADMKEAKNIA 131 (269)
Q Consensus 69 ~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivvp~~~---------~~~---~~~~l~~~Ga~v~~~~---~~~~~~~~~a 131 (269)
..+|+..+ |.-|.++|......|.+++++..... ... -...+..+|.+++.+. .+.++.....
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 86 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRVF 86 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 45666555 47899999988888998777654311 111 1234555677776554 3444555555
Q ss_pred HHHHhhhC
Q psy5622 132 LKKGAELG 139 (269)
Q Consensus 132 ~~~~~~~~ 139 (269)
.++.++.+
T Consensus 87 ~~~~~~~g 94 (256)
T PRK12748 87 YAVSERLG 94 (256)
T ss_pred HHHHHhCC
Confidence 55555443
No 377
>PRK06179 short chain dehydrogenase; Provisional
Probab=49.57 E-value=68 Score=27.62 Aligned_cols=66 Identities=12% Similarity=0.017 Sum_probs=41.9
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+..+|.-|.+++......|.++++...... +... ..+.+++.++ .+.++..+...+..++.+
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~---~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRNPA---RAAP--IPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChh---hccc--cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 4678888899999999998889999777654321 1111 2355666666 455555555555544443
No 378
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=49.52 E-value=85 Score=28.14 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=33.8
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.+++....|..|.+++..|+.+|++++++.+ ++.+.+.++.+|++-+..
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~vi~ 219 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKALGAEVTAFSR---SPSKKEDALKLGADEFIA 219 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEec
Confidence 3444345789999999999999997655543 234666677889765543
No 379
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=49.47 E-value=1.3e+02 Score=27.62 Aligned_cols=50 Identities=6% Similarity=-0.164 Sum_probs=29.2
Q ss_pred cEEEeCCChHHHHHHHHHHh-cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSR-LNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|+..+++..+..++..+-. -| + .|+++.-+-..-...++..|++++.++
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~g-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~ 144 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPG-D-FALLLDPGYPSHAGGVYLAGGQIYPMP 144 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCC-C-EEEEcCCCCcchHHHHHhcCCEEEEEE
Confidence 46666666776665544321 23 2 344444433344566788999999875
No 380
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.46 E-value=99 Score=26.49 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=43.4
Q ss_pred CccEEEeCC--ChHHHHHHHHHHhcCCCeEEEEc----CCC----cH----HHHHHHHHcCCEEEEeC---CCHHHHHHH
Q psy5622 68 KKGVISASL--GNHAQAMCYHGSRLNIPVTVVMP----IVA----PI----MKIQACRRYGATVIVEG---ADMKEAKNI 130 (269)
Q Consensus 68 ~~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivvp----~~~----~~----~~~~~l~~~Ga~v~~~~---~~~~~~~~~ 130 (269)
+..+|+..+ +.-|.++|......|.++++.-. ... .. ...+.++..|.++..+. .+.++..+.
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~ 86 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKEL 86 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 345666555 47899999999999998777521 110 11 12344667788887654 344455555
Q ss_pred HHHHHhhhC
Q psy5622 131 ALKKGAELG 139 (269)
Q Consensus 131 a~~~~~~~~ 139 (269)
..++.++.+
T Consensus 87 ~~~~~~~~g 95 (256)
T PRK12859 87 LNKVTEQLG 95 (256)
T ss_pred HHHHHHHcC
Confidence 555555543
No 381
>PRK07577 short chain dehydrogenase; Provisional
Probab=49.40 E-value=1.1e+02 Score=25.47 Aligned_cols=61 Identities=8% Similarity=0.070 Sum_probs=40.7
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~ 137 (269)
..+|+..+|-.|.++|......|.+++++...... ....+++..+ .+.++..+...++.++
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 66 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLGHQVIGIARSAID--------DFPGELFACDLADIEQTAATLAQINEI 66 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc--------ccCceEEEeeCCCHHHHHHHHHHHHHh
Confidence 46788899999999999999999988877654322 1234666666 4444444444544443
No 382
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=49.36 E-value=1.1e+02 Score=28.27 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=42.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD 123 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 123 (269)
.+.|....-|-.|....-+|+.+|.+++.+-. ++.|++..+.+||+.+....+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~---~~~K~e~a~~lGAd~~i~~~~ 219 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITR---SEEKLELAKKLGADHVINSSD 219 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeC---ChHHHHHHHHhCCcEEEEcCC
Confidence 55677777777787778889999988777654 678999999999999887653
No 383
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=49.32 E-value=1.2e+02 Score=26.86 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=33.5
Q ss_pred EEEeCCChHHHHHHHHHHhc-CCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 71 VISASLGNHAQAMCYHGSRL-NIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
+|...+|..|.++...|+.+ |.+++.+.+. +.+.+.++.+|++-+.
T Consensus 153 lV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 153 LIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 44555788999999899988 9887666443 4567777889986544
No 384
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.28 E-value=90 Score=27.90 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=35.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++++...+|..|.++...|+..|.+.++.+... +.+...++.+|++-+.
T Consensus 169 g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v~ 218 (345)
T cd08287 169 GSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDIV 218 (345)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceEe
Confidence 3444445689999999999999999865555433 4567778889985433
No 385
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=49.19 E-value=1.2e+02 Score=25.72 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=23.1
Q ss_pred CCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622 47 TGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVM 98 (269)
Q Consensus 47 tGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv 98 (269)
||.-..-+. .+...+. +.+...++...+.....+++...+..|-++..+.
T Consensus 17 tGas~~IG~-~la~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 17 TGSARGLGF-EIARALA-GAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred ECCCchHHH-HHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 344443332 3333333 3344444445544444455544555666655444
No 386
>PRK12939 short chain dehydrogenase; Provisional
Probab=49.05 E-value=1e+02 Score=25.90 Aligned_cols=84 Identities=18% Similarity=0.084 Sum_probs=47.0
Q ss_pred CeEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCe--eecCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLT--YINGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+.+++... ..-..-.+.+...|.+|+.+..+.+...+...++....... +..+ ..++. .....
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D----------l~~~~---~~~~~ 74 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAAD----------LADPA---SVQRF 74 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc----------CCCHH---HHHHH
Confidence 33444433 23345556677789999988765554444444443222111 2222 23332 33455
Q ss_pred HHHHHhhcCCCCEEEEecCcc
Q psy5622 169 GLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G~G 189 (269)
..++.++++.+|.++..+|..
T Consensus 75 ~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 75 FDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 566666677899999999864
No 387
>PRK08462 biotin carboxylase; Validated
Probab=48.94 E-value=1.2e+02 Score=28.67 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=21.5
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVM 98 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivv 98 (269)
+.|.....|-.+.-+..+|+++|++++++.
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G~~~v~~~ 34 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMGKEAIAIY 34 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEe
Confidence 456667777777777777777777777663
No 388
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=48.93 E-value=1.6e+02 Score=26.52 Aligned_cols=54 Identities=15% Similarity=0.026 Sum_probs=32.2
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHH
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKE 126 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~ 126 (269)
..++..+++..+..++..+-.-| + ++++...-..-...++.+|.+++.++ |.++
T Consensus 65 ~~i~~t~G~~~~i~~~~~~l~~g-~--vl~~~p~y~~~~~~~~~~g~~~~~~~-d~~~ 118 (330)
T TIGR01140 65 ASVLPVNGAQEAIYLLPRLLAPG-R--VLVLAPTYSEYARAWRAAGHEVVELP-DLDR 118 (330)
T ss_pred hhEEECCCHHHHHHHHHHHhCCC-e--EEEeCCCcHHHHHHHHHcCCEEEEeC-CHHH
Confidence 45666666666666543332224 3 44544344445667889999999988 4443
No 389
>PRK05854 short chain dehydrogenase; Provisional
Probab=48.88 E-value=1.2e+02 Score=27.20 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=44.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHH-c-CCEEE--EeC-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRR-Y-GATVI--VEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~-~-Ga~v~--~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..++--|.++|....+.|.+++++...... ...++.++. . +.++. .++ .+.++..+.+.++.++.+
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 456788888888999998888889887776543211 112223332 2 34554 445 567777777777666544
No 390
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=48.74 E-value=1e+02 Score=27.10 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=33.9
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.+|...+|..|.+++..|+.+|.++++... ++.+.+.++.+|++-+.
T Consensus 150 vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 196 (326)
T cd08289 150 VLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEVI 196 (326)
T ss_pred EEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEEE
Confidence 345555699999999999999998655443 34567777889985443
No 391
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=48.70 E-value=73 Score=30.75 Aligned_cols=48 Identities=23% Similarity=0.190 Sum_probs=37.1
Q ss_pred hHHHHHHHHhchHhc----CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 52 ERGACYALLMLSEDQ----KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 52 ~R~a~~~l~~~~~~~----~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
-|+..+.+..+.+.. +.++|+....||-|..+|.....+|.+++.+..
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 367777776654433 457899999999999999999999998886553
No 392
>PRK12414 putative aminotransferase; Provisional
Probab=48.69 E-value=1.4e+02 Score=27.52 Aligned_cols=51 Identities=12% Similarity=-0.083 Sum_probs=29.3
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.++..++|..+..++..+- +.-.-.|+++...-..-...++.+|++++.++
T Consensus 92 ~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (384)
T PRK12414 92 EVTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDSYAPIVRLQGATPVAIK 142 (384)
T ss_pred cEEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccchHHHHHHcCCEEEEEe
Confidence 4777777777766555432 22222344444332334555677899998776
No 393
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.65 E-value=1.2e+02 Score=25.39 Aligned_cols=70 Identities=11% Similarity=0.157 Sum_probs=42.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH--HHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI--MKIQACRRYGATVIVEG---ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.+++......|.+++++...+... .....+...+.++..+. .+.++..+...+..++
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3467888889999999998888899877763333221 22233444566665554 3344444444444443
No 394
>PTZ00376 aspartate aminotransferase; Provisional
Probab=48.59 E-value=2.3e+02 Score=26.33 Aligned_cols=75 Identities=17% Similarity=0.052 Sum_probs=43.9
Q ss_pred CCCCchhhHHHHHHHHhchHhc----CCccEE--EeCCChHHHHHHHHH--HhcCCCeEEEEcCCCcHHHHHHHHHcCCE
Q psy5622 45 QVTGSFKERGACYALLMLSEDQ----KKKGVI--SASLGNHAQAMCYHG--SRLNIPVTVVMPIVAPIMKIQACRRYGAT 116 (269)
Q Consensus 45 nptGS~K~R~a~~~l~~~~~~~----~~~~vv--~~SsGN~g~alA~~a--~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 116 (269)
.+.|.-..|-+..... .... ....|+ ...+|+.+..++..+ ..++-.-.|++++-+-..-...++.+|++
T Consensus 70 ~~~G~~~lR~aia~~~--~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~ 147 (404)
T PTZ00376 70 PIEGLQSFIEAAQKLL--FGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLN 147 (404)
T ss_pred CCCCCHHHHHHHHHHh--cCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCc
Confidence 3468778887654422 1111 122344 355666666665542 22333345667666666667788999999
Q ss_pred EEEeC
Q psy5622 117 VIVEG 121 (269)
Q Consensus 117 v~~~~ 121 (269)
++.++
T Consensus 148 ~~~v~ 152 (404)
T PTZ00376 148 VKEYR 152 (404)
T ss_pred eeecc
Confidence 99876
No 395
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=48.57 E-value=2.2e+02 Score=26.12 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=82.1
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH-------HHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeee
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI-------MKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-------~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~ 143 (269)
+.+.|+ -+-.|.=.+++++|-+++-|-+...+. ...+.+..||++++++.-....+-+.+.+..... ..+
T Consensus 53 FFEpST-RTr~SFE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~--pvI 129 (316)
T COG0540 53 FFEPST-RTRLSFETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVN--PVI 129 (316)
T ss_pred EecCCC-chhhhHHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHHhcCCC--ceE
Confidence 556777 445789999999999998777665332 3467789999999888654455555555544332 244
Q ss_pred cCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEec-C---cchHHHHHHhHHHHHHhcCCCCCCCcEEEEEc
Q psy5622 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPV-G---GGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVE 219 (269)
Q Consensus 144 ~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~-G---~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe 219 (269)
|. +-. ...+|-. . --=.+=|.++.+.+|.+-++. | .|-++.....+++.+ + .++..|-
T Consensus 130 Na----GDG--~~qHPTQ--~-LLDl~TI~~~~G~~~gl~iaivGDlkhsRva~S~~~~L~~~-------g--a~v~lvs 191 (316)
T COG0540 130 NA----GDG--SHQHPTQ--A-LLDLYTIREEFGRLDGLKIAIVGDLKHSRVAHSNIQALKRF-------G--AEVYLVS 191 (316)
T ss_pred EC----CCC--CCCCccH--H-HHHHHHHHHHhCCcCCcEEEEEccccchHHHHHHHHHHHHc-------C--CEEEEEC
Confidence 43 000 0113321 0 011244566667666544444 3 488888899999888 5 6777777
Q ss_pred CCCCh
Q psy5622 220 SDRCA 224 (269)
Q Consensus 220 ~~~~~ 224 (269)
|..--
T Consensus 192 P~~L~ 196 (316)
T COG0540 192 PETLL 196 (316)
T ss_pred chHhC
Confidence 87643
No 396
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=48.47 E-value=1.2e+02 Score=28.00 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHH----HHHHHcCCEEEEeCCCHHHH
Q psy5622 77 GNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKI----QACRRYGATVIVEGADMKEA 127 (269)
Q Consensus 77 GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~----~~l~~~Ga~v~~~~~~~~~~ 127 (269)
.|.+.|++.+++++|++++++.|++.. +..+ +..+..|+++.... +.+++
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~-d~~ea 221 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD-DIDEG 221 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc-CHHHH
Confidence 489999999999999999999998632 2222 22345788876654 34443
No 397
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.42 E-value=1.4e+02 Score=25.98 Aligned_cols=83 Identities=18% Similarity=0.092 Sum_probs=0.0
Q ss_pred CeEEEEcC----CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPI----VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~----~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+.+++... +.-..-.+.+..-|++|+.+..+ +...+.++++..+.+...... -|....+....+
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~~~~~~~~-----------~Dl~~~~~v~~~ 74 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQLGSDIVLP-----------CDVAEDASIDAM 74 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhccCCceEee-----------cCCCCHHHHHHH
Q ss_pred HHHHHhhcCCCCEEEEecC
Q psy5622 169 GLEIVDQVANIDAIVVPVG 187 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G 187 (269)
..++.++++.+|.+|..+|
T Consensus 75 ~~~~~~~~g~iD~linnAg 93 (262)
T PRK07984 75 FAELGKVWPKFDGFVHSIG 93 (262)
T ss_pred HHHHHhhcCCCCEEEECCc
No 398
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=48.42 E-value=83 Score=28.55 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=36.9
Q ss_pred eCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHH-HHHcCCEEEEeCCCHHHH
Q psy5622 74 ASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQA-CRRYGATVIVEGADMKEA 127 (269)
Q Consensus 74 ~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~-l~~~Ga~v~~~~~~~~~~ 127 (269)
.-.+|...|++.+++++|+++.++.|+... +..++. .+..|.++.... +.+++
T Consensus 159 Gd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~-d~~~a 214 (304)
T PRK00779 159 GDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH-DPKEA 214 (304)
T ss_pred eCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc-CHHHH
Confidence 335799999999999999999999998732 222222 466788876553 34443
No 399
>PRK07063 short chain dehydrogenase; Provisional
Probab=48.32 E-value=1.4e+02 Score=25.46 Aligned_cols=12 Identities=0% Similarity=-0.000 Sum_probs=8.9
Q ss_pred CCcEEEEEcCCC
Q psy5622 211 LEIVDQGVESDR 222 (269)
Q Consensus 211 ~~~~vigVe~~~ 222 (269)
..+++.+|.|--
T Consensus 179 ~gIrvn~v~PG~ 190 (260)
T PRK07063 179 RNVRVNAIAPGY 190 (260)
T ss_pred cCeEEEEEeeCC
Confidence 468888888754
No 400
>PRK05764 aspartate aminotransferase; Provisional
Probab=48.30 E-value=1.4e+02 Score=27.44 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=30.7
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
.++..+++..+..++..+- ..-.-.|+++...-..-....+.+|++++.++.
T Consensus 93 ~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 144 (393)
T PRK05764 93 QVIVTTGAKQALYNAFMAL-LDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPT 144 (393)
T ss_pred HEEEeCCcHHHHHHHHHHh-cCCCCEEEecCCCCcchHHHHHHcCCEEEEEec
Confidence 4666666666665554432 222234556554444445567889999987764
No 401
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=48.17 E-value=1.1e+02 Score=23.36 Aligned_cols=83 Identities=11% Similarity=0.057 Sum_probs=37.9
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEeC-CCHH----HHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHH
Q psy5622 97 VMPIVAPIMKIQACRRYGATVIVEG-ADMK----EAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLE 171 (269)
Q Consensus 97 vvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~E 171 (269)
.+..-.++..+..+...|-+.++.- .+-+ -.....++.+++.|..|++- ++.+ .++. .+ ......+
T Consensus 10 ~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i------Pv~~-~~~~-~~-~v~~f~~ 80 (110)
T PF04273_consen 10 SVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI------PVDG-GAIT-EE-DVEAFAD 80 (110)
T ss_dssp EEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----------T-TT---HH-HHHHHHH
T ss_pred EECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe------ecCC-CCCC-HH-HHHHHHH
Confidence 3444456777888888998888763 1111 11222345677888877654 1111 2221 12 2233345
Q ss_pred HHhhcCCCCEEEEecCc
Q psy5622 172 IVDQVANIDAIVVPVGG 188 (269)
Q Consensus 172 I~~ql~~~d~vv~p~G~ 188 (269)
++++++.|=.++|-.|+
T Consensus 81 ~l~~~~~Pvl~hC~sG~ 97 (110)
T PF04273_consen 81 ALESLPKPVLAHCRSGT 97 (110)
T ss_dssp HHHTTTTSEEEE-SCSH
T ss_pred HHHhCCCCEEEECCCCh
Confidence 66666666555555554
No 402
>PRK07060 short chain dehydrogenase; Provisional
Probab=47.97 E-value=1.5e+02 Score=24.75 Aligned_cols=51 Identities=8% Similarity=0.009 Sum_probs=35.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-HHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-RRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~Ga~v~~~~ 121 (269)
...+|+..+|..|..++......|.+++++... ..+.+.+ ...+.+++.++
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D 61 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLD 61 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEec
Confidence 356778888999999999999999986665542 2233333 34567776666
No 403
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=47.92 E-value=2e+02 Score=26.05 Aligned_cols=52 Identities=6% Similarity=-0.059 Sum_probs=30.5
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCC-CeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNI-PVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..|+...++..+..++..+- .+- +-.|+++...-..-...++.+|++++.++
T Consensus 75 ~~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~ 127 (351)
T PRK01688 75 EQVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVP 127 (351)
T ss_pred HHEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEee
Confidence 45776666677666555432 221 13445554333344566788999998875
No 404
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=47.77 E-value=80 Score=29.24 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=35.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++|+....|..|.+++..|+.+|.+++++.+. ++.+.+.++.+|++.+.
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 456666667999999999999999985554332 23345666789997554
No 405
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=47.77 E-value=1.1e+02 Score=32.42 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=28.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
.+.|+.-.+|-.|.+.|+..++.|++++||=.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 56799999999999999999999999999854
No 406
>PLN02527 aspartate carbamoyltransferase
Probab=47.71 E-value=1.2e+02 Score=27.63 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHhc-CCCeEEEEcCCC--cHHHHHHHHHcCCEEEEeC
Q psy5622 77 GNHAQAMCYHGSRL-NIPVTVVMPIVA--PIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 77 GN~g~alA~~a~~~-G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~ 121 (269)
+|.+.|++.+++++ |++++++.|++. ++...+.++..|.++....
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 46899999998877 999999999873 4444555666777776554
No 407
>PRK09105 putative aminotransferase; Provisional
Probab=47.62 E-value=1.7e+02 Score=26.97 Aligned_cols=53 Identities=11% Similarity=-0.059 Sum_probs=32.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
...|+...++..+..++..+- .+-.-.|++++..-..-....+.+|++++.++
T Consensus 95 ~e~I~it~Gs~~ai~~~~~~l-~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~ 147 (370)
T PRK09105 95 ADHVMAYAGSSEPLNYAVLAF-TSPTAGLVTADPTYEAGWRAADAQGAPVAKVP 147 (370)
T ss_pred hhhEEEcCChHHHHHHHHHHH-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEec
Confidence 345777777777666665433 22223455555444555667888999999876
No 408
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=47.52 E-value=1.4e+02 Score=25.76 Aligned_cols=72 Identities=10% Similarity=-0.002 Sum_probs=42.6
Q ss_pred CccEEEeCC--ChHHHHHHHHHHhcCCCeEEEE-cCC--CcHHHHHHHHHcCCEE--EEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 68 KKGVISASL--GNHAQAMCYHGSRLNIPVTVVM-PIV--APIMKIQACRRYGATV--IVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 68 ~~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivv-p~~--~~~~~~~~l~~~Ga~v--~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
+..+|+..+ +--|.++|....+.|.++++.. +.+ ......+.++..+.++ +.++ .+.++..+...+..++.+
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 86 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQKWG 86 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHHcC
Confidence 345677644 5788899988889999987653 222 1233455555444444 3444 455666666666655544
No 409
>PRK07206 hypothetical protein; Provisional
Probab=47.38 E-value=2.3e+02 Score=26.39 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHHhcCCCeEEEEcCCCc----------------------HHHHHHHHHcCCEEEEeCCCHHHHHHHHHH
Q psy5622 76 LGNHAQAMCYHGSRLNIPVTVVMPIVAP----------------------IMKIQACRRYGATVIVEGADMKEAKNIALK 133 (269)
Q Consensus 76 sGN~g~alA~~a~~~G~~~~ivvp~~~~----------------------~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~ 133 (269)
++..|..++.+++++|++++++...... +.-++.++.++.+.+....+ .....+.+
T Consensus 10 ~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~~~e--~~~~~~a~ 87 (416)
T PRK07206 10 PFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIAGAE--SGVELADR 87 (416)
T ss_pred CCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEECCC--ccHHHHHH
Confidence 3566778888888888888877633211 11234566677776665432 33445555
Q ss_pred HHhhhCC
Q psy5622 134 KGAELGL 140 (269)
Q Consensus 134 ~~~~~~~ 140 (269)
+++..+.
T Consensus 88 l~~~l~l 94 (416)
T PRK07206 88 LAEILTP 94 (416)
T ss_pred HHHhcCC
Confidence 6655543
No 410
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=47.25 E-value=1.3e+02 Score=26.40 Aligned_cols=34 Identities=21% Similarity=0.074 Sum_probs=30.4
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcC
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPI 100 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 100 (269)
....++...+|.-+.++|..|+.+|++++++=|.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSR 132 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCC
Confidence 4568999999999999999999999999987654
No 411
>PRK05854 short chain dehydrogenase; Provisional
Probab=47.19 E-value=1.4e+02 Score=26.75 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=50.2
Q ss_pred CeEEEEcCC--CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhC---Ceee-cCCCCCCccccCCCCcchhccch
Q psy5622 93 PVTVVMPIV--APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELG---LTYI-NGYLSSGLSVLGYDHPDIMAGQG 166 (269)
Q Consensus 93 ~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~---~~~~-~~~~~~~~~~~g~~n~~~~~g~~ 166 (269)
+.+++...+ .-..-.+.+...|++|+.+..+.+...+...++.++.+ ..++ .+ ..++ ....
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~D----------l~d~---~sv~ 81 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALD----------LSSL---ASVA 81 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEec----------CCCH---HHHH
Confidence 455555433 33445566777899999887765555555555544432 1121 11 2232 3345
Q ss_pred hHHHHHHhhcCCCCEEEEecCcc
Q psy5622 167 TVGLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 167 t~~~EI~~ql~~~d~vv~p~G~G 189 (269)
.++.++.+..+.+|.+|..+|..
T Consensus 82 ~~~~~~~~~~~~iD~li~nAG~~ 104 (313)
T PRK05854 82 ALGEQLRAEGRPIHLLINNAGVM 104 (313)
T ss_pred HHHHHHHHhCCCccEEEECCccc
Confidence 66777777777899999988753
No 412
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=46.96 E-value=1.2e+02 Score=27.92 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=38.5
Q ss_pred ccEEEeCCC--hHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHH----HHHHcCCEEEEeCCCHHHH
Q psy5622 69 KGVISASLG--NHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQ----ACRRYGATVIVEGADMKEA 127 (269)
Q Consensus 69 ~~vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~----~l~~~Ga~v~~~~~~~~~~ 127 (269)
.+|+-...+ |.+.|++.+++++|++++++.|+.. ++..++ ..+..|.++.... +.+++
T Consensus 156 ~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~-d~~ea 221 (331)
T PRK02102 156 LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE-DPEEA 221 (331)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc-CHHHH
Confidence 444444443 8999999999999999999999873 222222 2345788876655 33443
No 413
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.90 E-value=1.1e+02 Score=26.39 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=42.2
Q ss_pred ccEEEe--CCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHH-cCC-EEEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISA--SLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRR-YGA-TVIVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~--SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga-~v~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+. +++--|.++|....+.|.++++.-..+....+.+.+.. .|. ..+.++ .+.++..+...+..++.+
T Consensus 8 ~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (261)
T PRK08690 8 KILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD 83 (261)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence 346665 35577899999888899988775332222334444433 343 233455 566676666666666544
No 414
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=46.89 E-value=1.3e+02 Score=25.40 Aligned_cols=68 Identities=13% Similarity=0.041 Sum_probs=41.0
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHH-HHHHHHcCCEEEEeC---CCHHHHHHHHHHHHh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMK-IQACRRYGATVIVEG---ADMKEAKNIALKKGA 136 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~-~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~ 136 (269)
..+|+..+|-.|.+++......|.+++++........+ ...++..+.++..+. .+.++......++.+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 45788888999999999988889987776654322222 223444566665543 333443344444433
No 415
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=46.88 E-value=1.3e+02 Score=28.95 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=23.9
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVM 98 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivv 98 (269)
++|..+.+|-.+.-++.+|+.+|++++.+.
T Consensus 3 kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~ 32 (478)
T PRK08463 3 HKILIANRGEIAVRVIRACRDLHIKSVAIY 32 (478)
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 467778888888888888999999877555
No 416
>PRK07777 aminotransferase; Validated
Probab=46.59 E-value=1.6e+02 Score=27.11 Aligned_cols=51 Identities=14% Similarity=-0.082 Sum_probs=29.9
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|+..++|..+..++..+- ..-.-.|+++...-..-...++.+|++++.++
T Consensus 87 ~i~~t~G~~~al~~~~~~~-~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~ 137 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGL-VEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVP 137 (387)
T ss_pred cEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhhHHHHHHCCCEEEEee
Confidence 4777777777776665543 22112344443333334566778899988764
No 417
>CHL00194 ycf39 Ycf39; Provisional
Probab=46.54 E-value=93 Score=27.80 Aligned_cols=31 Identities=6% Similarity=0.063 Sum_probs=26.8
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPI 100 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 100 (269)
.+|+..+|..|..++......|.++++++..
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4788899999999999988889998888754
No 418
>PRK08264 short chain dehydrogenase; Validated
Probab=46.52 E-value=59 Score=27.29 Aligned_cols=32 Identities=9% Similarity=-0.052 Sum_probs=26.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCC-CeEEEEc
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNI-PVTVVMP 99 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp 99 (269)
...+|+..+|..|.++|....+.|. +++++..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 4568888899999999999999998 7666654
No 419
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=46.43 E-value=1.1e+02 Score=26.97 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=34.0
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
.+++....|..|.+++..|+.+|.+++++.+ ++.++..++.+|++.+..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVD 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEec
Confidence 3444445667999999999999998666544 345667777788765543
No 420
>PLN02342 ornithine carbamoyltransferase
Probab=46.39 E-value=74 Score=29.56 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=37.1
Q ss_pred eCCChHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHHHHHHcCC-EEEEeCCCHHHHH
Q psy5622 74 ASLGNHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQACRRYGA-TVIVEGADMKEAK 128 (269)
Q Consensus 74 ~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga-~v~~~~~~~~~~~ 128 (269)
.-..|.+.|++.+++++|++++++.|++. ++..++.++..|. ++... .+.+++.
T Consensus 201 GD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~-~d~~eav 257 (348)
T PLN02342 201 GDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEIT-NDPAEAV 257 (348)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEE-cCHHHHh
Confidence 33358999999999999999999999874 3344555566674 55444 3444443
No 421
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.23 E-value=95 Score=26.81 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=49.1
Q ss_pred CeEEEEcC----CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPI----VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~----~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+.+++... +.-..-.+.+...|++|+.+... +...+.++++.++.+.....+ . |....+....+
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~-Dv~~~~~v~~~ 74 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVV-DKLEERVRKMAAELDSELVFR----------C-DVASDDEINQV 74 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc-HHHHHHHHHHHhccCCceEEE----------C-CCCCHHHHHHH
Confidence 44555542 23355566677789999987533 222334455554433222222 1 22223445667
Q ss_pred HHHHHhhcCCCCEEEEecCcc
Q psy5622 169 GLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G~G 189 (269)
..++.++++.+|.+|..+|.+
T Consensus 75 ~~~~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 75 FADLGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred HHHHHHHhCCCcEEEECCccC
Confidence 777888888899999999864
No 422
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.06 E-value=1.4e+02 Score=25.73 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=41.3
Q ss_pred ccEEEeC--CChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-HHcCCE-EEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 69 KGVISAS--LGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-RRYGAT-VIVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 69 ~~vv~~S--sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~Ga~-v~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
..+|+.. ++--|.++|......|.++++.-.......+++.+ +.+|.. .+.++ .+.++..+...+..++.+
T Consensus 8 ~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (260)
T PRK06997 8 RILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD 83 (260)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence 4566653 45678888888888999887753222223344433 334543 33455 566666666666665544
No 423
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=45.96 E-value=2.1e+02 Score=25.16 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=33.1
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHH-cCCEEEEe
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRR-YGATVIVE 120 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga~v~~~ 120 (269)
+|...+|-.|.+++..|+.+|.+++++.+ ++.+...++. +|++-+..
T Consensus 150 lI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~~~~ 197 (329)
T cd05288 150 VVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDAAIN 197 (329)
T ss_pred EEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCceEEe
Confidence 45455789999999999999997655543 3456666666 89854443
No 424
>PRK09291 short chain dehydrogenase; Provisional
Probab=45.87 E-value=54 Score=27.87 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=35.1
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHH-HHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMK-IQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~-~~~l~~~Ga~v~~~~ 121 (269)
..+|+..+|..|.+++......|.++++.........+ .......|.++..+.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEK 57 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEE
Confidence 46788999999999999999999998887654221111 223344555554443
No 425
>PRK07062 short chain dehydrogenase; Provisional
Probab=45.86 E-value=1.6e+02 Score=25.08 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=48.4
Q ss_pred CeEEEEcCC--CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhC--CeeecCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPIV--APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELG--LTYINGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+.++++... .-..-.+.+...|++|+.+..+.+...+...++.++.+ .....+ . ...|+ .....+
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~-------D~~~~---~~v~~~ 77 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAAR-C-------DVLDE---ADVAAF 77 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEE-e-------cCCCH---HHHHHH
Confidence 345555432 33455666777899999887654444444444444322 111111 0 02233 233456
Q ss_pred HHHHHhhcCCCCEEEEecCcc
Q psy5622 169 GLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G~G 189 (269)
..++.++++.+|.+|..+|.+
T Consensus 78 ~~~~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 78 AAAVEARFGGVDMLVNNAGQG 98 (265)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 667777778899999998854
No 426
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=45.66 E-value=1.2e+02 Score=22.36 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=29.4
Q ss_pred EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
++....|..|..++..-+..+.+++++-. ++.+.+.++..|.+++.-+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~gd 48 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIYGD 48 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEES-
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhccccccccc
Confidence 34556678888888887775656655544 3455666666776665544
No 427
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=45.66 E-value=1.8e+02 Score=24.27 Aligned_cols=32 Identities=6% Similarity=-0.082 Sum_probs=26.0
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPI 100 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 100 (269)
..+|+..+|..|.++|..-.+.|.++++....
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 45788889999999999888889887777654
No 428
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=45.62 E-value=1.7e+02 Score=24.59 Aligned_cols=70 Identities=7% Similarity=0.017 Sum_probs=41.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHH-HHHHHHHcCC---EEEEeCC---CHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIM-KIQACRRYGA---TVIVEGA---DMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~l~~~Ga---~v~~~~~---~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|..|.+++......|.+++++.....+.. ....++..+. +++..+- +.++..+...++.+.
T Consensus 13 k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 13 RIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 45688899999999999998888998876654322111 1233444442 2333332 444544555555444
No 429
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.58 E-value=1.5e+02 Score=25.50 Aligned_cols=13 Identities=8% Similarity=0.021 Sum_probs=10.0
Q ss_pred CCcEEEEEcCCCC
Q psy5622 211 LEIVDQGVESDRC 223 (269)
Q Consensus 211 ~~~~vigVe~~~~ 223 (269)
..+++..|.|-.-
T Consensus 181 ~gIrVn~v~PG~v 193 (260)
T PRK06603 181 NNIRVNAISAGPI 193 (260)
T ss_pred cCeEEEEEecCcC
Confidence 4689999988654
No 430
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=45.55 E-value=3.1e+02 Score=26.95 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=41.9
Q ss_pred CCccEEEeCCChHHHHHHHHHH-hcCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeC
Q psy5622 67 KKKGVISASLGNHAQAMCYHGS-RLNIPVTVVMPIV-APIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~-~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..+.++.+..|....+++.... .+|++++.++... ..+...+.++.++...+.++
T Consensus 327 ~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~~~~~~~~i~ 383 (513)
T TIGR01861 327 KGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVARCGEGALAID 383 (513)
T ss_pred CCCEEEEECCchHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHhCCCCcEEec
Confidence 4678999999999999998888 5999998877654 45656666777776655554
No 431
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=45.53 E-value=92 Score=29.84 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=37.6
Q ss_pred cEEEeCC---ChHHHHHHHHHHhc-CCCeEEEEcCCC--cHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASL---GNHAQAMCYHGSRL-NIPVTVVMPIVA--PIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~Ss---GN~g~alA~~a~~~-G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~ 121 (269)
+|+-... +|.+.|++.+++.+ |++++++.|++. ++..++.++..|.++..+.
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 4444344 69999999997665 999999999874 3444556666788876654
No 432
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=45.51 E-value=1.1e+02 Score=28.09 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=35.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATV 117 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 117 (269)
.++|+....|..|.+++..|+.+|.+.++++ +.++.|...++.+|+..
T Consensus 177 g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~--~~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 177 GDTVAVFGAGPVGLMAAYSAILRGASRVYVV--DHVPERLDLAESIGAIP 224 (375)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCeE
Confidence 3455446678999999999999998544444 33567888888999854
No 433
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=45.17 E-value=2.5e+02 Score=25.87 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=34.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATV 117 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 117 (269)
.++|..-..||.|.++|...+..|++++++.+...... ...+..|.++
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~--~~A~~~G~~~ 64 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSW--KKAEADGFEV 64 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhH--HHHHHCCCee
Confidence 45677778899999999999999998887766543222 2244567653
No 434
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=45.11 E-value=35 Score=24.91 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=26.8
Q ss_pred CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh
Q psy5622 177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA 224 (269)
Q Consensus 177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~ 224 (269)
...|.+++-+..|...--++-.+++. ..++.|+.|++.+.-
T Consensus 10 ~~~d~~I~i~A~GivvR~iap~l~dK-------~~DPaVvvvde~g~~ 50 (84)
T PF11760_consen 10 RRYDAIIFIMAAGIVVRAIAPLLKDK-------DTDPAVVVVDEDGRF 50 (84)
T ss_dssp CC-SEEEEES-HHHHHHHHHHH---T-------TT--EEEEE-TT--E
T ss_pred cCCCeEEEEeCcHHHHHHhChhhccc-------CCCCCEEEEeCCCCE
Confidence 45899998888999999999988887 778999999999864
No 435
>KOG0023|consensus
Probab=45.07 E-value=1e+02 Score=28.51 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=35.9
Q ss_pred EEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 72 ISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 72 v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
|..-+| .|.---.+|+.+|++++++-..+ ..|.+.++.+||+......
T Consensus 187 I~GlGG-LGh~aVq~AKAMG~rV~vis~~~--~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 187 IVGLGG-LGHMAVQYAKAMGMRVTVISTSS--KKKEEAIKSLGADVFVDST 234 (360)
T ss_pred EecCcc-cchHHHHHHHHhCcEEEEEeCCc--hhHHHHHHhcCcceeEEec
Confidence 334444 77666778999999999876533 4577889999999987764
No 436
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=44.88 E-value=1.2e+02 Score=26.68 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=34.8
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
..+|...+|..|.+++..++..|.+++++.. ++.+...++.+|++-+.
T Consensus 165 ~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~~~~ 212 (332)
T cd08259 165 TVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGADYVI 212 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 3456677799999999999999998766654 23456666778875433
No 437
>PRK08703 short chain dehydrogenase; Provisional
Probab=44.82 E-value=1.4e+02 Score=25.01 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=26.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
+..+|+..+|..|.++|......|.+++++..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 34578888999999999998888998766554
No 438
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=44.81 E-value=2e+02 Score=24.59 Aligned_cols=57 Identities=18% Similarity=0.048 Sum_probs=37.4
Q ss_pred HHHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCC
Q psy5622 168 VGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK 234 (269)
Q Consensus 168 ~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~ 234 (269)
....++++-+++|+|++. ...+.|+..++++. |. ..+++++|. ..++.+.+.++.|.
T Consensus 174 ~~~~~l~~~~~~~~i~~~---d~~a~~~~~~l~~~----g~-p~di~vig~--~~~p~~~~~l~~g~ 230 (268)
T cd06306 174 LVEEALEAHPDIDYIVGS---AVAAEAAVGILRQR----GL-TDQIKIVST--YLSHAVYRGLKRGK 230 (268)
T ss_pred HHHHHHHhCCCcCEEeec---chhhhHHHHHHHhc----CC-CCCeEEEec--CCCHHHHHHHHcCc
Confidence 334444443468988752 66777888888776 22 246888886 45667778887765
No 439
>PRK06194 hypothetical protein; Provisional
Probab=44.80 E-value=2e+02 Score=24.84 Aligned_cols=85 Identities=8% Similarity=0.079 Sum_probs=46.9
Q ss_pred CeEEEEcCC--CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhC-CeeecCCCCCCccccCCCCcchhccchhHH
Q psy5622 93 PVTVVMPIV--APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELG-LTYINGYLSSGLSVLGYDHPDIMAGQGTVG 169 (269)
Q Consensus 93 ~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~ 169 (269)
+.+++.... .-..-.+.+...|++|+.++.+.....+...++..... ..++... ..++ +....+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D---------~~d~---~~~~~~~ 74 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTD---------VSDA---AQVEALA 74 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECC---------CCCH---HHHHHHH
Confidence 444555432 33445566777899999887654433333333332211 2222110 2233 2345566
Q ss_pred HHHHhhcCCCCEEEEecCcc
Q psy5622 170 LEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 170 ~EI~~ql~~~d~vv~p~G~G 189 (269)
.++.++.+.+|.||..+|..
T Consensus 75 ~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 75 DAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 67777777899999999864
No 440
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=44.79 E-value=2.4e+02 Score=25.61 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=36.6
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
..-+|.+.+|.-|..+.-.|+.+|...++.+. +..|.+.++.+||+.+..
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 33466677899998888899999985444444 235666899999977665
No 441
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=44.76 E-value=1.5e+02 Score=28.87 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=24.8
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
++|..+-.|-.+..+..+|+.+|++++.+.+
T Consensus 3 ~kvLIan~Geia~~iiraar~lGi~~V~v~s 33 (499)
T PRK08654 3 KKILIANRGEIAIRVMRACRELGIKTVAVYS 33 (499)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCeEEEEec
Confidence 4677788888888888899999998776643
No 442
>PLN02780 ketoreductase/ oxidoreductase
Probab=44.54 E-value=1.7e+02 Score=26.33 Aligned_cols=32 Identities=6% Similarity=0.203 Sum_probs=25.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
...+|+..+|--|.++|..-.+.|.+++++-.
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~~Vil~~R 85 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGLNLVLVAR 85 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCEEEEEC
Confidence 45578888888899999998888998777654
No 443
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=44.53 E-value=1e+02 Score=27.62 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=34.6
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
++++...+|-.|.+++..|+.+|.+.++++ +.++.+...++.+|++.+.
T Consensus 163 ~~vlI~~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v 211 (340)
T TIGR00692 163 KSVLVTGAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVV 211 (340)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEE
Confidence 344334468888898889999998845555 3456778888889986443
No 444
>PLN02231 alanine transaminase
Probab=44.32 E-value=3.1e+02 Score=26.95 Aligned_cols=53 Identities=11% Similarity=-0.032 Sum_probs=32.8
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..|+..+++..|..+++.+-...-.-.|++|.-.-..-...++.+|++++.++
T Consensus 192 e~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~ 244 (534)
T PLN02231 192 NDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYY 244 (534)
T ss_pred ccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEe
Confidence 34666666666665555433211123456666555556677888999998775
No 445
>PLN02702 L-idonate 5-dehydrogenase
Probab=44.12 E-value=1.3e+02 Score=27.28 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=36.2
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
..++....|..|.++...|+.+|.+.++.+.. ++.|...++.+|++...
T Consensus 183 ~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 183 TNVLVMGAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 34444457889999999999999986555543 46777788889987654
No 446
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=44.06 E-value=1.6e+02 Score=27.36 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=31.2
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..|+..+++..+..++..+-. +-.-.|+++..+-..-...++.+|++++.++
T Consensus 105 ~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 156 (412)
T PTZ00433 105 DNVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYN 156 (412)
T ss_pred hhEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEe
Confidence 456666666766666555432 2223455554444445667888999998775
No 447
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=44.00 E-value=1.3e+02 Score=26.77 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=31.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATV 117 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 117 (269)
.++|+...+|..|.+++..|+.+|++.++++.. ++.+...++.+|++-
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~--s~~~~~~~~~~g~~~ 213 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDL--ADAPLAVARAMGADE 213 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCCE
Confidence 444444446788888888999999844444422 345556777788743
No 448
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=43.98 E-value=1.5e+02 Score=27.23 Aligned_cols=51 Identities=16% Similarity=-0.095 Sum_probs=30.1
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.|+..+++..+..++..+- +.-.-.|+++...-..-....+.+|++++.++
T Consensus 95 ~ii~t~G~~~~i~~~~~~~-~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~ 145 (385)
T PRK09276 95 EVISLIGSKEGIAHIPLAF-VNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMP 145 (385)
T ss_pred cEEEccCcHHHHHHHHHHh-CCCCCEEEEcCCCCcChHHHHHHcCCEEEEEe
Confidence 4666666667665554432 22223555655444444556778999998775
No 449
>PRK07074 short chain dehydrogenase; Provisional
Probab=43.95 E-value=1.4e+02 Score=25.37 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=25.4
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
..+|+..+|..|.+++......|.+++++..
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 4578888889999999998888998777654
No 450
>PRK08361 aspartate aminotransferase; Provisional
Probab=43.90 E-value=2.4e+02 Score=25.98 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=31.2
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..|+..+++..+..++..+- .+-.-.|+++...-..-...++..|++++.++
T Consensus 94 ~~i~~t~G~~~al~~~~~~l-~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 145 (391)
T PRK08361 94 DNVIVTAGAYEATYLAFESL-LEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIP 145 (391)
T ss_pred ccEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCcccHHHHHHcCCEEEEEe
Confidence 35666677777666555432 22234566655443334567777999998775
No 451
>PRK12742 oxidoreductase; Provisional
Probab=43.60 E-value=1.5e+02 Score=24.68 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=34.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHH-HHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQA-CRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~-l~~~Ga~v~~~~ 121 (269)
+..+|+..+|.-|.++|......|.++++..... ..+.+. ....+.+.+.++
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~~D 59 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQETGATAVQTD 59 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHhCCeEEecC
Confidence 4567888889999999999888999876654332 222222 244577766665
No 452
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.60 E-value=2e+02 Score=24.42 Aligned_cols=85 Identities=6% Similarity=-0.110 Sum_probs=44.3
Q ss_pred CeEEEEcCC----CcHHHHHHHHHcCCEEEEeCCC-----------HHHHHHHHHHHHhhhCCeeecCCCCCCccccCCC
Q psy5622 93 PVTVVMPIV----APIMKIQACRRYGATVIVEGAD-----------MKEAKNIALKKGAELGLTYINGYLSSGLSVLGYD 157 (269)
Q Consensus 93 ~~~ivvp~~----~~~~~~~~l~~~Ga~v~~~~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~ 157 (269)
+.+++.... .-..-.+.+...|++|+.+... ..+......++.+........+ .
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~- 74 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHME----------I- 74 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEE----------C-
Confidence 445555432 4455666777789999887532 1222222222222111121112 1
Q ss_pred CcchhccchhHHHHHHhhcCCCCEEEEecCc
Q psy5622 158 HPDIMAGQGTVGLEIVDQVANIDAIVVPVGG 188 (269)
Q Consensus 158 n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~ 188 (269)
|............++.++++.+|++|..+|.
T Consensus 75 D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 75 DLSQPYAPNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 1112233445666777777789999998875
No 453
>PRK12747 short chain dehydrogenase; Provisional
Probab=43.56 E-value=1.2e+02 Score=25.76 Aligned_cols=53 Identities=8% Similarity=0.006 Sum_probs=35.0
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEe
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVE 120 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~ 120 (269)
+..+|+..+|--|.++|....+.|.++++......+ ......++..|.++..+
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSI 59 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEE
Confidence 456888888999999999999999987775422211 22233455556666544
No 454
>PLN02827 Alcohol dehydrogenase-like
Probab=43.49 E-value=2.7e+02 Score=25.66 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=35.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.++|+....|-.|.+++..|+.+|.+.++.+.. ++.|.+.++.+|++-++
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 455555557889999888999999865554432 45677888889997544
No 455
>PRK06914 short chain dehydrogenase; Provisional
Probab=43.48 E-value=1.7e+02 Score=25.25 Aligned_cols=32 Identities=6% Similarity=0.018 Sum_probs=26.6
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPI 100 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 100 (269)
..+|+..+|-.|.+++......|.+++++...
T Consensus 5 ~~lItGasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 5 IAIVTGASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 45888999999999999988889998777543
No 456
>PRK06181 short chain dehydrogenase; Provisional
Probab=43.32 E-value=1.4e+02 Score=25.52 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCe--eecCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCCE
Q psy5622 104 IMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLT--YINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDA 181 (269)
Q Consensus 104 ~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~ 181 (269)
..-.+.+...|.+|+.+..+.....+...++....... +..+ ..|+ ........++.++++.+|.
T Consensus 15 ~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D----------l~~~---~~~~~~~~~~~~~~~~id~ 81 (263)
T PRK06181 15 RALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTD----------VSDA---EACERLIEAAVARFGGIDI 81 (263)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc----------CCCH---HHHHHHHHHHHHHcCCCCE
Confidence 33445566789999988866554444333333322211 1222 2333 2334555666666778999
Q ss_pred EEEecCcc
Q psy5622 182 IVVPVGGG 189 (269)
Q Consensus 182 vv~p~G~G 189 (269)
||.++|..
T Consensus 82 vi~~ag~~ 89 (263)
T PRK06181 82 LVNNAGIT 89 (263)
T ss_pred EEECCCcc
Confidence 99998753
No 457
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=43.28 E-value=2.5e+02 Score=26.94 Aligned_cols=52 Identities=25% Similarity=0.101 Sum_probs=34.1
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCC-eEEEEcCCCcHHHHHHHHHcCCEEEEeCCC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIP-VTVVMPIVAPIMKIQACRRYGATVIVEGAD 123 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 123 (269)
.|+..++... |+-+.++.+=-+ -+|++..-+-..-+..++.+|++++.++-|
T Consensus 157 ~IiiT~G~q~--al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d 209 (459)
T COG1167 157 QIVITSGAQQ--ALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVD 209 (459)
T ss_pred eEEEeCCHHH--HHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC
Confidence 3554444443 555565555333 566666666677788999999999988743
No 458
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=43.23 E-value=81 Score=28.75 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=25.9
Q ss_pred eCCChHHHHHHHHHHhcCCCeEEEEcCCCc
Q psy5622 74 ASLGNHAQAMCYHGSRLNIPVTVVMPIVAP 103 (269)
Q Consensus 74 ~SsGN~g~alA~~a~~~G~~~~ivvp~~~~ 103 (269)
.-.+|.+.|+..+++++|++++++.|++.+
T Consensus 160 Gd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 160 GVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 445899999999999999999999998854
No 459
>PRK05599 hypothetical protein; Provisional
Probab=43.21 E-value=1.5e+02 Score=25.19 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=39.0
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCC-EE--EEeC-CCHHHHHHHHHHHHhhhC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGA-TV--IVEG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga-~v--~~~~-~~~~~~~~~a~~~~~~~~ 139 (269)
.+|+..++.-|.++|....+ |.+++++-..... +...+.++..|. ++ +.++ .+.++..+...++.++.+
T Consensus 3 vlItGas~GIG~aia~~l~~-g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 3 ILILGGTSDIAGEIATLLCH-GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred EEEEeCccHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 46778888889999987664 8776665432211 122334555554 24 3445 455555555555555443
No 460
>PRK07109 short chain dehydrogenase; Provisional
Probab=43.18 E-value=2e+02 Score=26.05 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=47.5
Q ss_pred CeEEEEcCC--CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCe-ee-cCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPIV--APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLT-YI-NGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+.+++.... .-..-.+.+...|++|+.+..+.+...+...++.+..... ++ -+ ..|+. .....
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~D----------v~d~~---~v~~~ 75 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVAD----------VADAE---AVQAA 75 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEec----------CCCHH---HHHHH
Confidence 445555432 3344556677789999988765444333333333221222 21 12 23332 33456
Q ss_pred HHHHHhhcCCCCEEEEecCcc
Q psy5622 169 GLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G~G 189 (269)
..++.++++.+|.+|..+|..
T Consensus 76 ~~~~~~~~g~iD~lInnAg~~ 96 (334)
T PRK07109 76 ADRAEEELGPIDTWVNNAMVT 96 (334)
T ss_pred HHHHHHHCCCCCEEEECCCcC
Confidence 677777788899999998853
No 461
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=43.14 E-value=1.7e+02 Score=25.93 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=34.8
Q ss_pred CccEEEeCCChHHHHHHHHHHh-cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSR-LNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..+++...+|-.|.+++..|+. .|.+++.+.+ ++.+++.++.+|++.+...
T Consensus 163 g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~~ 214 (338)
T PRK09422 163 GQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTINS 214 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEecc
Confidence 3444443478889898888887 4987655543 4467777888998665443
No 462
>PLN02583 cinnamoyl-CoA reductase
Probab=43.14 E-value=1e+02 Score=27.29 Aligned_cols=34 Identities=9% Similarity=-0.068 Sum_probs=28.6
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcC
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPI 100 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 100 (269)
++..+|+..+|.-|..++......|+++++++..
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3456888889999999999999999999887754
No 463
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=43.08 E-value=1.4e+02 Score=24.92 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=34.4
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH--HHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI--MKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~~~Ga~v~~~~ 121 (269)
..+|+..+|..|..+|......|.+++++..++.+. .....+...+.++..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 56 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVE 56 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEE
Confidence 357888899999999999999999877766432211 11223444555665443
No 464
>PRK07576 short chain dehydrogenase; Provisional
Probab=43.08 E-value=1.7e+02 Score=25.19 Aligned_cols=70 Identities=11% Similarity=0.024 Sum_probs=41.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|.-|.+++......|.+++++...... +.....+...+.+++.+ + .+.++..+..++..+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 456788888999999999888889987666543211 11223455566666544 3 3444444444444333
No 465
>PRK08363 alanine aminotransferase; Validated
Probab=42.87 E-value=2.5e+02 Score=25.89 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=30.6
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 120 (269)
..|+..+++..|..++..+- ++-.-.|+++...-..-...++.+|++++.+
T Consensus 94 ~~i~it~G~~~al~~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~ 144 (398)
T PRK08363 94 DDVRVTAAVTEALQLIFGAL-LDPGDEILIPGPSYPPYTGLVKFYGGVPVEY 144 (398)
T ss_pred hhEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHHcCCEEEEe
Confidence 34666666677766665443 2322345565544444456777899988876
No 466
>PRK09082 methionine aminotransferase; Validated
Probab=42.80 E-value=2.4e+02 Score=25.92 Aligned_cols=52 Identities=8% Similarity=-0.128 Sum_probs=31.1
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
.++..+++..+..++..+- ++-.-.|+++...-..-...++..|++++.++-
T Consensus 93 ~i~~t~G~~~al~~~~~~~-~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~ 144 (386)
T PRK09082 93 EITVTAGATEALFAAILAL-VRPGDEVIVFDPSYDSYAPAIELAGGRAVRVAL 144 (386)
T ss_pred cEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec
Confidence 4666666666666555433 222234555554444456677788999988764
No 467
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=42.80 E-value=1.4e+02 Score=28.56 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=48.6
Q ss_pred hHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHH----HHHHcCCEEEEeCC--CHH
Q psy5622 52 ERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQ----ACRRYGATVIVEGA--DMK 125 (269)
Q Consensus 52 ~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~----~l~~~Ga~v~~~~~--~~~ 125 (269)
.+.....+..+ ++ ....+..+||-.+..++..+- ++-.-.|++|...-..-.. .+..+|+++..++. +.+
T Consensus 63 v~~lE~~la~l--eg-~~~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~ 138 (432)
T PRK06702 63 LAAFEQKLAEL--EG-GVGAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD 138 (432)
T ss_pred HHHHHHHHHHH--hC-CCcEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH
Confidence 44444444433 22 334677888998888887654 3333466677654332222 36889999999874 333
Q ss_pred HHHHHHHHHHhhhCCeeecC
Q psy5622 126 EAKNIALKKGAELGLTYING 145 (269)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~ 145 (269)
+ .+. .+..+....|+..
T Consensus 139 ~-l~~--~I~~~Tk~I~~e~ 155 (432)
T PRK06702 139 E-IVA--LANDKTKLVYAES 155 (432)
T ss_pred H-HHH--hCCcCCeEEEEEc
Confidence 3 222 2233344566655
No 468
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=42.72 E-value=2.3e+02 Score=26.75 Aligned_cols=64 Identities=11% Similarity=-0.037 Sum_probs=43.1
Q ss_pred CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC-CcHHHHHHHHHcCCEEE-EeCCCHHHHHHH
Q psy5622 67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV-APIMKIQACRRYGATVI-VEGADMKEAKNI 130 (269)
Q Consensus 67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~-~~~~~~~~~~~~ 130 (269)
..++++.+..+....+++.....+|++.+.+.... ..+...+.++.+..++. ..+.|..+..+.
T Consensus 273 ~Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~ 338 (407)
T TIGR01279 273 RGKKIFFFGDNLLELPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQR 338 (407)
T ss_pred CCCEEEEECCchHHHHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHH
Confidence 46678888889999999999999999988776544 34444555565554443 344666554433
No 469
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=42.70 E-value=1.3e+02 Score=26.15 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=32.2
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCC-eEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIP-VTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
..++...+|-.|.+++..|+.+|++ +++ +.. .+.+...++.+|++-+.
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~g~~~v~~-~~~--~~~~~~~~~~~g~~~~~ 179 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAAGARRVIA-IDR--RPARLALARELGATEVV 179 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEE-ECC--CHHHHHHHHHhCCceEe
Confidence 3443334688999999999999998 544 332 24566677888885433
No 470
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=42.64 E-value=1.3e+02 Score=26.54 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=33.7
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
.+|...+|-.|.+++..|+.+|.+++++.. ++.+...++.+|++-+.
T Consensus 143 vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 189 (329)
T cd08250 143 VLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRPI 189 (329)
T ss_pred EEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceEE
Confidence 455566789999999999999998655543 34556667778875443
No 471
>PRK08960 hypothetical protein; Provisional
Probab=42.62 E-value=2.5e+02 Score=25.77 Aligned_cols=52 Identities=6% Similarity=-0.097 Sum_probs=32.0
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..|+..+++..|..+++.+- ..-.-.|+++...-..-...++.+|++++.++
T Consensus 93 ~~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~ 144 (387)
T PRK08960 93 ERILVTPGGSGALLLASSLL-VDPGKHWLLADPGYPCNRHFLRLVEGAAQLVP 144 (387)
T ss_pred hhEEEccCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCeEEEEe
Confidence 45777777788776665443 22223455555443444567778899998765
No 472
>PRK06123 short chain dehydrogenase; Provisional
Probab=42.58 E-value=1.4e+02 Score=25.12 Aligned_cols=69 Identities=16% Similarity=0.089 Sum_probs=40.0
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~ 137 (269)
..+|+..+|.-|.++|..-.+.|..+++...... .......++..|.+++.+ + .+.++..+...+..++
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRE 77 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHH
Confidence 4578888899999999888888987554432221 112233455567666544 3 3444444444444443
No 473
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=42.42 E-value=1.4e+02 Score=27.44 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=33.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI 118 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 118 (269)
.++++....|..|.+++..|+.+|.+-++++. .++.+++.++.+|++-+
T Consensus 191 g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~~~ 239 (373)
T cd08299 191 GSTCAVFGLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGATEC 239 (373)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceE
Confidence 34555546799999999999999984334442 24567777788998533
No 474
>PRK07568 aspartate aminotransferase; Provisional
Probab=42.21 E-value=1.6e+02 Score=26.96 Aligned_cols=75 Identities=11% Similarity=-0.017 Sum_probs=39.0
Q ss_pred CCCchhhHHHHHHHHhch-HhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 46 VTGSFKERGACYALLMLS-EDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 46 ptGS~K~R~a~~~l~~~~-~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
+.|.-..|-+........ ..-..+.|+..++|..|..++..+- ..-.-.|+++......-....+.+|++++.++
T Consensus 65 ~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~ 140 (397)
T PRK07568 65 SQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAI-CDPGDEILVPEPFYANYNGFATSAGVKIVPVT 140 (397)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHh-cCCCCEEEEecCCCccHHHHHHHcCCEEEEee
Confidence 346666665544332210 0112345777777777766655432 22222444544333333455678999998776
No 475
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=42.18 E-value=1.7e+02 Score=23.66 Aligned_cols=117 Identities=15% Similarity=0.041 Sum_probs=59.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHH-----------HHHHHcCCEEEEeCCCHHHHHHHHHHHHh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKI-----------QACRRYGATVIVEGADMKEAKNIALKKGA 136 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~-----------~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~ 136 (269)
.+.++...+|+-|...+..-...|.+++++-|+-.++.+. +.-...++.+++.-.+-++.-....+.++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHHHHHHH
Confidence 4567778888888777777667788888775543322110 00112345555444333344444555565
Q ss_pred hhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHH
Q psy5622 137 ELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIM 203 (269)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~ 203 (269)
+....+ . .++|..- ..+..-+ .. -+-+.++++|+|..-.+++.+|+.+
T Consensus 93 ~~~~vn--~----------~d~~~~~---~f~~pa~---v~-~~~l~iaisT~G~sP~la~~lr~~i 140 (157)
T PRK06719 93 DFQWVN--V----------VSDGTES---SFHTPGV---IR-NDEYVVTISTSGKDPSFTKRLKQEL 140 (157)
T ss_pred HCCcEE--E----------CCCCCcC---cEEeeeE---EE-ECCeEEEEECCCcChHHHHHHHHHH
Confidence 544333 2 2233210 0000001 11 1336777777777777777777653
No 476
>PRK07337 aminotransferase; Validated
Probab=42.14 E-value=2e+02 Score=26.46 Aligned_cols=52 Identities=8% Similarity=-0.017 Sum_probs=32.1
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..|+..+++..+..++..+- ++-.-.|++|...-..-...++.+|++++.++
T Consensus 91 ~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~ 142 (388)
T PRK07337 91 ERIVVTAGASAALLLACLAL-VERGDEVLMPDPSYPCNRHFVAAAEGRPVLVP 142 (388)
T ss_pred HhEEEecCcHHHHHHHHHHh-cCCCCEEEEeCCCchhhHHHHHHcCCEEEEee
Confidence 35676777777766554432 23334566655444444567788999998776
No 477
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=42.07 E-value=1.5e+02 Score=26.65 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=31.7
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEE
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI 118 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 118 (269)
..++..-..|..|.+++..++.+|.+++++-.. +.+....+.+|++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 455666667888888888888888766555332 334556666777653
No 478
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=42.03 E-value=2.7e+02 Score=25.28 Aligned_cols=53 Identities=23% Similarity=0.059 Sum_probs=33.7
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
..|+..+++..+..++..+-.++-.-.|++++-.-..-...++.+|++++.++
T Consensus 87 ~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~ 139 (364)
T PRK07865 87 AAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRAD 139 (364)
T ss_pred ccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecC
Confidence 45777777777776654432223334566666544445566778999998886
No 479
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=42.02 E-value=1.1e+02 Score=25.08 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=25.1
Q ss_pred ccEEEeCCChHH-HHH--HHHHHhcCCCeEEEE--cC-CCcH---HHHHHHHHcCCEEEE
Q psy5622 69 KGVISASLGNHA-QAM--CYHGSRLNIPVTVVM--PI-VAPI---MKIQACRRYGATVIV 119 (269)
Q Consensus 69 ~~vv~~SsGN~g-~al--A~~a~~~G~~~~ivv--p~-~~~~---~~~~~l~~~Ga~v~~ 119 (269)
..++-+..||.| -++ |...+..|+++.++. +. ..++ ...+.++.+|.+++.
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 86 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIE 86 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEES
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEee
Confidence 334456666554 333 444556799988854 22 2222 234455555555443
No 480
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.96 E-value=2.2e+02 Score=24.56 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=47.3
Q ss_pred CeEEEEcC----CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPI----VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~----~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+.+++... +.-..-.+.+...|++|+.+... +...+..+++.++.+.....+ -|....+.....
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~Dv~d~~~v~~~ 74 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFTYVG-DRFKDRITEFAAEFGSDLVFP-----------CDVASDEQIDAL 74 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccc-hHHHHHHHHHHHhcCCcceee-----------ccCCCHHHHHHH
Confidence 44555552 23445556677789999887532 111223333444333211111 122233445677
Q ss_pred HHHHHhhcCCCCEEEEecCcc
Q psy5622 169 GLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G~G 189 (269)
..++.++++++|.+|..+|..
T Consensus 75 ~~~~~~~~g~iD~lvnnAG~~ 95 (260)
T PRK06997 75 FASLGQHWDGLDGLVHSIGFA 95 (260)
T ss_pred HHHHHHHhCCCcEEEEccccC
Confidence 778888888999999998864
No 481
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=41.94 E-value=1.6e+02 Score=24.83 Aligned_cols=63 Identities=11% Similarity=-0.035 Sum_probs=40.5
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEE--EeC-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI--VEG-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~--~~~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|..|.+++....+.|.+++++.... ++..+.++. .++ .+.++..+...+..++.
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAET 74 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--------hhhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4567888889999999999888999988876543 233344444 344 34444444444444443
No 482
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=41.90 E-value=1.8e+02 Score=26.40 Aligned_cols=52 Identities=17% Similarity=-0.000 Sum_probs=33.1
Q ss_pred ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC
Q psy5622 69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD 123 (269)
Q Consensus 69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 123 (269)
..|+..+++..+..+.. +.++-. .++++.-+-..-....+.+|++++.++.+
T Consensus 72 ~~I~i~~Gs~e~i~~l~--~~~~~g-~v~v~~P~y~~y~~~~~~~g~~~~~v~~~ 123 (339)
T PRK06959 72 AHVLPVAGSQAAIRALP--ALLPRG-RVGIAPLAYSEYAPAFARHGHRVVPLDEA 123 (339)
T ss_pred ccEEECcCHHHHHHHHH--HhcCCC-eEEEcCCCcHHHHHHHHHCCCEEEeeccc
Confidence 45777777777665433 233222 25556655566667788999999988754
No 483
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=41.88 E-value=1.8e+02 Score=25.58 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=34.4
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.+|...+|..|.+++..|+.+|.+.++.+.. +.+.+.++.+|++-+...
T Consensus 149 vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~~~ 197 (323)
T TIGR02823 149 VLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEVIDR 197 (323)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEEEcc
Confidence 3444556999999999999999986655443 345577788898544433
No 484
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.87 E-value=2e+02 Score=24.49 Aligned_cols=83 Identities=24% Similarity=0.122 Sum_probs=46.8
Q ss_pred CeEEEEcC----CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622 93 PVTVVMPI----VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV 168 (269)
Q Consensus 93 ~~~ivvp~----~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~ 168 (269)
+.+++... +.-..-.+.+...|++|+.+..+ +...+...++....-.++.-+ ..++ +.....
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~D----------l~~~---~~v~~~ 73 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN-DRMKKSLQKLVDEEDLLVECD----------VASD---ESIERA 73 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc-hHHHHHHHhhccCceeEEeCC----------CCCH---HHHHHH
Confidence 45555543 34455666777789999988654 222222333322111112111 1232 344566
Q ss_pred HHHHHhhcCCCCEEEEecCcc
Q psy5622 169 GLEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 169 ~~EI~~ql~~~d~vv~p~G~G 189 (269)
..++.++++++|.+|..+|..
T Consensus 74 ~~~~~~~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 74 FATIKERVGKIDGIVHAIAYA 94 (252)
T ss_pred HHHHHHHhCCCCEEEEccccc
Confidence 777888888999999988854
No 485
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=41.85 E-value=1.9e+02 Score=26.31 Aligned_cols=79 Identities=20% Similarity=0.016 Sum_probs=42.8
Q ss_pred CCCCCCchhhHHHHHHHHhch-H-h-cCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 43 FFQVTGSFKERGACYALLMLS-E-D-QKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 43 ~~nptGS~K~R~a~~~l~~~~-~-~-~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
+-.|.|+...|-+........ . . -....|+..+++..+..++..+-..+-.-.|+++...-..-...++.+|++++.
T Consensus 52 Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~ 131 (357)
T TIGR03539 52 YPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVA 131 (357)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEec
Confidence 334567766665432221100 0 0 123457777777777665443221233345666665545555667889999988
Q ss_pred eC
Q psy5622 120 EG 121 (269)
Q Consensus 120 ~~ 121 (269)
++
T Consensus 132 v~ 133 (357)
T TIGR03539 132 AD 133 (357)
T ss_pred cC
Confidence 75
No 486
>PRK07023 short chain dehydrogenase; Provisional
Probab=41.82 E-value=90 Score=26.35 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=33.8
Q ss_pred cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 121 (269)
.+|+..+|.-|.++|......|.+++++..+..+ . .....|.++..+.
T Consensus 4 vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~-~---~~~~~~~~~~~~~ 51 (243)
T PRK07023 4 AIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP-S---LAAAAGERLAEVE 51 (243)
T ss_pred EEEecCCcchHHHHHHHHHhCCCEEEEEecCcch-h---hhhccCCeEEEEE
Confidence 5788999999999999988899998776543322 1 1334566665443
No 487
>PRK05872 short chain dehydrogenase; Provisional
Probab=41.81 E-value=99 Score=27.32 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=47.3
Q ss_pred CeEEEEcCC--CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeee-cCCCCCCccccCCCCcchhccchhHH
Q psy5622 93 PVTVVMPIV--APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI-NGYLSSGLSVLGYDHPDIMAGQGTVG 169 (269)
Q Consensus 93 ~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~g~~n~~~~~g~~t~~ 169 (269)
+.+++.... .-..-.+.+...|++|+.+..+.+...+.+.++.......++ .+ ..++ .......
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~D----------v~d~---~~v~~~~ 76 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVAD----------VTDL---AAMQAAA 76 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEec----------CCCH---HHHHHHH
Confidence 344555432 334455667778999998887655544444433211111111 11 1232 2334566
Q ss_pred HHHHhhcCCCCEEEEecCc
Q psy5622 170 LEIVDQVANIDAIVVPVGG 188 (269)
Q Consensus 170 ~EI~~ql~~~d~vv~p~G~ 188 (269)
.++.++++.+|.+|..+|.
T Consensus 77 ~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 77 EEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 6777778889999999986
No 488
>PRK07326 short chain dehydrogenase; Provisional
Probab=41.68 E-value=2e+02 Score=23.84 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=46.3
Q ss_pred CeEEEEcC--CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeee-cCCCCCCccccCCCCcchhccchhHH
Q psy5622 93 PVTVVMPI--VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI-NGYLSSGLSVLGYDHPDIMAGQGTVG 169 (269)
Q Consensus 93 ~~~ivvp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~g~~n~~~~~g~~t~~ 169 (269)
+.+++... ..-..-.+.+...|.+|+.+..+.....+...++.+.....++ .+ ..++ .-.....
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D----------~~~~---~~~~~~~ 73 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAAD----------VRDE---ADVQRAV 73 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEcc----------CCCH---HHHHHHH
Confidence 44555543 2334455556667999988876544333333444332122222 12 2232 2234556
Q ss_pred HHHHhhcCCCCEEEEecCcc
Q psy5622 170 LEIVDQVANIDAIVVPVGGG 189 (269)
Q Consensus 170 ~EI~~ql~~~d~vv~p~G~G 189 (269)
.++.++++.+|.||.+.|.+
T Consensus 74 ~~~~~~~~~~d~vi~~ag~~ 93 (237)
T PRK07326 74 DAIVAAFGGLDVLIANAGVG 93 (237)
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 67777777899999988764
No 489
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=41.66 E-value=2e+02 Score=24.43 Aligned_cols=84 Identities=15% Similarity=0.024 Sum_probs=45.3
Q ss_pred CeEEEEcCC--CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622 93 PVTVVMPIV--APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL 170 (269)
Q Consensus 93 ~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~ 170 (269)
+.+++.... .-..-.+.+...|++|+.+..+ +...+....+.+..+.....+ . |....+....+..
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~-D~~~~~~i~~~~~ 83 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQ----------V-DLTKPESAEKVVK 83 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEE----------c-CCCCHHHHHHHHH
Confidence 455555443 3344555677789999887654 222222222322222222111 1 1112233456667
Q ss_pred HHHhhcCCCCEEEEecCc
Q psy5622 171 EIVDQVANIDAIVVPVGG 188 (269)
Q Consensus 171 EI~~ql~~~d~vv~p~G~ 188 (269)
++.++++.+|++|..+|.
T Consensus 84 ~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 84 EALEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 787778889999998875
No 490
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=41.54 E-value=1e+02 Score=30.32 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=39.9
Q ss_pred ccEEEeCC---ChHHHHHHHHHHhcC-CCeEEEEcCCC--cHHHHHHHHHcCCEEEEeC
Q psy5622 69 KGVISASL---GNHAQAMCYHGSRLN-IPVTVVMPIVA--PIMKIQACRRYGATVIVEG 121 (269)
Q Consensus 69 ~~vv~~Ss---GN~g~alA~~a~~~G-~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~ 121 (269)
.+|+-... +|.+.|++.+++++| ++++++.|++. ++.-+..++..|+.+..+.
T Consensus 175 lkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 175 IHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 34444444 799999999999998 99999999874 4455566667898887654
No 491
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=41.51 E-value=1.1e+02 Score=29.71 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCCeEEEEc---CC-CcH----HHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccc
Q psy5622 82 AMCYHGSRLNIPVTVVMP---IV-API----MKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSV 153 (269)
Q Consensus 82 alA~~a~~~G~~~~ivvp---~~-~~~----~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 153 (269)
++.|.++.+|++..-++. .. .+. .-++.++..+.++++++..+....+.++.++++.+.-.+.-
T Consensus 380 af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~~V~~IF~Epq~~~~~~~l~~IA~e~Gv~V~~l-------- 451 (479)
T TIGR03772 380 AYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENLKVPAVFLEPNLAARSTTLNEIADELGVRVCAI-------- 451 (479)
T ss_pred cHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCchHHHHHHHHHcCCcEEee--------
Confidence 789999999999887652 22 222 23556788999999998665544455677888877533211
Q ss_pred cCCCCcc--hhccchhHHHHHHhhc
Q psy5622 154 LGYDHPD--IMAGQGTVGLEIVDQV 176 (269)
Q Consensus 154 ~g~~n~~--~~~g~~t~~~EI~~ql 176 (269)
+.++. ....|..++.+.++++
T Consensus 452 --~~d~l~~~~~tY~~~M~~N~~~L 474 (479)
T TIGR03772 452 --YGDTFDDDVTNYVDLMRFNADSL 474 (479)
T ss_pred --ecCCCCCccccHHHHHHHHHHHH
Confidence 11111 1235667777766665
No 492
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.48 E-value=2.2e+02 Score=24.19 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=35.3
Q ss_pred HHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCC
Q psy5622 170 LEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK 234 (269)
Q Consensus 170 ~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~ 234 (269)
.+++++-+++|+|++. +..++.|+..++++. |. ..++.++|.+ +++...+.++.|+
T Consensus 177 ~~~l~~~~~~~ai~~~--~d~~a~g~~~al~~~----g~-~~~~~ivg~d--~~~~~~~~i~~g~ 232 (274)
T cd06311 177 QDLLTKFPKIDAVWAH--DDDMAVGVLAAIKQA----GR-TDIKFVVGGA--GSKDMIKMIMDGD 232 (274)
T ss_pred HHHHHhCCCcCEEEEC--CCcHHHHHHHHHHHc----CC-CCCceEEEeC--CCHHHHHHHHCCC
Confidence 3444433457887764 445677888898876 21 1356677755 4566678888885
No 493
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=41.44 E-value=1.9e+02 Score=27.41 Aligned_cols=94 Identities=9% Similarity=-0.087 Sum_probs=49.3
Q ss_pred CCCCCCchhhHHHHHHHHhchH-----hcCCccEEEeCCChHHHH--HHHHHHhcCCCeEEEEcCCCc-H----------
Q psy5622 43 FFQVTGSFKERGACYALLMLSE-----DQKKKGVISASLGNHAQA--MCYHGSRLNIPVTVVMPIVAP-I---------- 104 (269)
Q Consensus 43 ~~nptGS~K~R~a~~~l~~~~~-----~~~~~~vv~~SsGN~g~a--lA~~a~~~G~~~~ivvp~~~~-~---------- 104 (269)
+-+|.|..+. ....+.+... .+++..+|+..++..|.| +|.+. ..|.+++++.-...+ .
T Consensus 14 ~~hp~gc~~~--v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~ 90 (398)
T PRK13656 14 TAHPVGCEAN--VKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYN 90 (398)
T ss_pred CCCCHHHHHH--HHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccch
Confidence 3457775443 3344444322 223455777777767777 55566 678887776522111 1
Q ss_pred --HHHHHHHHcCCEEEE--eC-CCHHHHHHHHHHHHhhhC
Q psy5622 105 --MKIQACRRYGATVIV--EG-ADMKEAKNIALKKGAELG 139 (269)
Q Consensus 105 --~~~~~l~~~Ga~v~~--~~-~~~~~~~~~a~~~~~~~~ 139 (269)
.-.+.++..|..+.. ++ .+.++..+...++.++.|
T Consensus 91 ~~a~~~~a~~~G~~a~~i~~DVss~E~v~~lie~I~e~~G 130 (398)
T PRK13656 91 SAAFDKFAKAAGLYAKSINGDAFSDEIKQKVIELIKQDLG 130 (398)
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 123355667876553 34 333444445555555555
No 494
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=41.33 E-value=72 Score=29.87 Aligned_cols=92 Identities=15% Similarity=0.073 Sum_probs=47.9
Q ss_pred HHHHHcC-CEEEEeCCCHH---HHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC--CCCE
Q psy5622 108 QACRRYG-ATVIVEGADMK---EAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA--NIDA 181 (269)
Q Consensus 108 ~~l~~~G-a~v~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~--~~d~ 181 (269)
-.++.+| .++..++.||- +.-+.++++.++.|.-.+.. .--|. |. +-..+|++++. +||.
T Consensus 127 ~~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE----------~Y~pl---g~-td~~~ii~~I~~~~Pd~ 192 (363)
T PF13433_consen 127 YLLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGE----------RYLPL---GA-TDFDPIIAEIKAAKPDF 192 (363)
T ss_dssp HHHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEE----------EEE-S----H-HHHHHHHHHHHHHT-SE
T ss_pred HHHhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEE----------EEecC---Cc-hhHHHHHHHHHhhCCCE
Confidence 3567899 99999998764 66667777777776533322 00122 22 33445555554 7997
Q ss_pred EEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEE
Q psy5622 182 IVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGV 218 (269)
Q Consensus 182 vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigV 218 (269)
|+..+.+ ......++.+++. |+....+.|...
T Consensus 193 V~stlvG-~s~~aF~r~~~~a----G~~~~~~Pi~S~ 224 (363)
T PF13433_consen 193 VFSTLVG-DSNVAFYRAYAAA----GLDPERIPIASL 224 (363)
T ss_dssp EEEE--T-TCHHHHHHHHHHH----H-SSS---EEES
T ss_pred EEEeCcC-CcHHHHHHHHHHc----CCCcccCeEEEE
Confidence 7666544 4455666666655 333333555543
No 495
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=41.32 E-value=2.1e+02 Score=25.15 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=34.9
Q ss_pred CccEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622 68 KKGVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV 119 (269)
Q Consensus 68 ~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 119 (269)
..+++. ...|..|.+++..|+.+|++++.+.+ ++.+...++.+|++-+.
T Consensus 141 g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 190 (327)
T PRK10754 141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQVI 190 (327)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEEE
Confidence 345444 56789999999999999998665543 34566667889985443
No 496
>PRK07856 short chain dehydrogenase; Provisional
Probab=40.89 E-value=1.3e+02 Score=25.56 Aligned_cols=32 Identities=6% Similarity=-0.048 Sum_probs=26.4
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 99 (269)
+..+|+..+|--|.++|......|.+++++..
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r 38 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGR 38 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 45688888899999999998889998777654
No 497
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=40.88 E-value=1.3e+02 Score=27.70 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=34.4
Q ss_pred eCCChHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHHHH----HHcCCEEEEeC
Q psy5622 74 ASLGNHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQAC----RRYGATVIVEG 121 (269)
Q Consensus 74 ~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l----~~~Ga~v~~~~ 121 (269)
.-..|.+.|+..+++++|++++++.|+.. ++.-+..+ +..|.++....
T Consensus 161 GD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 161 GDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred CCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 33368999999999999999999999863 33333333 34688877654
No 498
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=40.80 E-value=1.9e+02 Score=24.14 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=38.8
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHH-HHHcCCEEEE--eC-CCHHHHHHHHHHHHhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQA-CRRYGATVIV--EG-ADMKEAKNIALKKGAE 137 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~-l~~~Ga~v~~--~~-~~~~~~~~~a~~~~~~ 137 (269)
+..+|+..+|.-|.+++......|..+++... + ..+++. ....+.++.. ++ .+.++..+...+..++
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~-~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGT-R--VEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcC-C--HHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45678888899999999998888985444322 2 233332 2334555544 34 3444444444444444
No 499
>PRK06197 short chain dehydrogenase; Provisional
Probab=40.77 E-value=1.6e+02 Score=26.06 Aligned_cols=71 Identities=10% Similarity=0.003 Sum_probs=42.2
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH-HHHHHHHHc--CCEEEE--eC-CCHHHHHHHHHHHHhhh
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI-MKIQACRRY--GATVIV--EG-ADMKEAKNIALKKGAEL 138 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l~~~--Ga~v~~--~~-~~~~~~~~~a~~~~~~~ 138 (269)
+..+|+..+|--|.++|......|.+++++....... ...+.++.. +.++.. ++ .+.++..+.+.++.++.
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 4567888888899999998888899877765532211 112233322 345543 44 45555555566655543
No 500
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=40.73 E-value=2.7e+02 Score=24.98 Aligned_cols=52 Identities=17% Similarity=0.038 Sum_probs=35.9
Q ss_pred CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622 68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122 (269)
Q Consensus 68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 122 (269)
.+.|+..+++..+..++.. +.-.-.|+++.-+-..-....+.+|++++.++.
T Consensus 64 ~~~I~it~Gs~~al~~~~~---~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~ 115 (330)
T PRK05664 64 APQLLPVAGSQAAIQALPR---LRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDE 115 (330)
T ss_pred CCCEEECcCHHHHHHHHHH---ccCCCEEEEcCCChHHHHHHHHHcCCeEEEech
Confidence 3467777777777776643 222345666666666667788999999999874
Done!