RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5622
(269 letters)
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 268 bits (688), Expect = 5e-90
Identities = 105/244 (43%), Positives = 145/244 (59%), Gaps = 25/244 (10%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
LSEL E++LK + Q TGSFK RGA LL LSE+++ KGV++AS GNHAQ + Y
Sbjct: 26 LSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAK 85
Query: 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
L IP T+VMP AP K+ A R YGA V++ G D EA+ A + E GLT+I+
Sbjct: 86 LLGIPATIVMPETAPAAKVDATRAYGAEVVLYGEDFDEAEAKARELAEEEGLTFIH---- 141
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA--YDH--PDIMA 204
+D PD++AGQGT+GLEI++QV ++DA+ VPVGGGGLIAG+A P+
Sbjct: 142 ------PFDDPDVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNT-- 193
Query: 205 GQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPL 264
+++ GVE + + + ++ GKP + T+ADGLAV G FE L
Sbjct: 194 -------KVI--GVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKL 244
Query: 265 IDKM 268
+D +
Sbjct: 245 VDDV 248
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 225 bits (575), Expect = 1e-71
Identities = 94/243 (38%), Positives = 142/243 (58%), Gaps = 25/243 (10%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
LSELT E++LK + Q TGSFK RGA + LSE+++ +GV++AS GNHAQ + Y
Sbjct: 30 TLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQGVAYAA 89
Query: 88 SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
S L I T+VMP AP+ K++A R YGA V++ G EA A + E G T+++
Sbjct: 90 SLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDVYDEALAKAQELAEETGATFVH--- 146
Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAY----DHPDIM 203
+D PD++AGQGT+GLEI++ + ++D +VVP+GGGGLI+GVA P++
Sbjct: 147 -------PFDDPDVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEV- 198
Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAP 263
++ GV+++ + ++ G+P + T+ADG+AV G FE
Sbjct: 199 --------RVI--GVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRE 248
Query: 264 LID 266
L+D
Sbjct: 249 LVD 251
>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional.
Length = 403
Score = 218 bits (559), Expect = 3e-69
Identities = 95/240 (39%), Positives = 142/240 (59%), Gaps = 19/240 (7%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
LS++T E++LK + Q T SFKERGA LL+L+E+++ +GVI+ S GNHAQ + YH
Sbjct: 32 LSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGVIAMSAGNHAQGVAYHAQ 91
Query: 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
RL IP T+VMP P +K++ R +GA V++ G + EA+ A + E GLT+++
Sbjct: 92 RLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGETLDEARAHARELAEEEGLTFVH---- 147
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
YD P ++AGQGTV LE+++ ++D +VVP+GGGGLI+G+A A
Sbjct: 148 ------PYDDPAVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMA-----TAAKALK 196
Query: 209 VGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKM 268
+EI+ GV+++ S AIK G P T+A+G+AV G E L+D +
Sbjct: 197 PDIEII--GVQTELYPSMYAAIK-GVALPCGGS-TIAEGIAVKQPGQLTLEIVRRLVDDI 252
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 216 bits (552), Expect = 5e-69
Identities = 99/244 (40%), Positives = 135/244 (55%), Gaps = 20/244 (8%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLS-EDQKKKGVISASLGNHAQAMCYH 86
LSE EI+LK++ Q GSFK RGA L LS E+++ GVI+AS GNHAQ + Y
Sbjct: 33 SLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIAASAGNHAQGVAYA 92
Query: 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
RL I T+VMP P +K+ A R YGA VI+ G + +A A + E GLT++
Sbjct: 93 AKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLTFVP-- 150
Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHPDIMAG 205
+D PD++AGQGT+ LEI++Q+ + DA+ VPVGGGGLI+G+A
Sbjct: 151 --------PFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIA-------TA 195
Query: 206 QGTVGLEIVDQGVESDRCASFSTAIKHGK-PTPVSVQPTLADGLAVPLVGWNAFETAAPL 264
+ EI GVE + S ++K GK + T+ADGLAV G FE L
Sbjct: 196 LKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILREL 255
Query: 265 IDKM 268
+D +
Sbjct: 256 VDDI 259
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 196 bits (499), Expect = 9e-61
Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 17/244 (6%)
Query: 25 KKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMC 84
+ LS++T E++LK + Q TGSFK RGA + LSEDQ+++GV++AS GNHAQ +
Sbjct: 5 YSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVA 64
Query: 85 YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
Y + I +VMP AP K++A + YGA VI+ G D EA A E G +++
Sbjct: 65 YAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGDDYDEAYAFATSLAEEEGRVFVH 124
Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMA 204
+D +MAGQGT+GLEI++ + ++D ++VPVGGGGLI+GVA A
Sbjct: 125 ----------PFDDEFVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVA-----SAA 169
Query: 205 GQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPL 264
Q ++++ GVE++ S +++ GK V T+ADG+AV G F
Sbjct: 170 KQINPNVKVI--GVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEY 227
Query: 265 IDKM 268
+D +
Sbjct: 228 VDDV 231
>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed.
Length = 504
Score = 187 bits (478), Expect = 3e-56
Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 28/246 (11%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLM-LSEDQKKKGVISASLGNHAQAMCYHG 87
LS ++ LK++ Q SFK RGA Y + L+E+Q +GVI+AS GNHAQ +
Sbjct: 29 LSARLGNQVLLKREDLQPVFSFKLRGA-YNKMAQLTEEQLARGVITASAGNHAQGVALSA 87
Query: 88 SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
+RL I +VMP+ P +K+ A R +G V++ G EA A++ E GLT+I+
Sbjct: 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEEEGLTFIH--- 144
Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVA----YDHPDI 202
+D PD++AGQGT+ +EI+ Q + +DA+ VPVGGGGLIAGVA P+I
Sbjct: 145 -------PFDDPDVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEI 197
Query: 203 MAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAA 262
+++ GVE + A A++ G+ + ADG+AV +G F
Sbjct: 198 ---------KVI--GVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQ 246
Query: 263 PLIDKM 268
+D +
Sbjct: 247 EYVDDV 252
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 179 bits (456), Expect = 7e-55
Identities = 91/248 (36%), Positives = 132/248 (53%), Gaps = 25/248 (10%)
Query: 25 KKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMC 84
+ ++LSE K EIFLK + Q TGSFK RGA L L++ +K+KGV++ S GNHAQ +
Sbjct: 32 RSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVA 91
Query: 85 YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
+ L I VVMP AP K+ A YGA V++ G + + + E G T+I
Sbjct: 92 LSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEEEGRTFIP 151
Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYD----HP 200
YD P ++AGQGT+GLEI++ + ++D ++VP+GGGGLIAG+A +P
Sbjct: 152 ----------PYDDPKVIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINP 201
Query: 201 DIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFET 260
I I+ GV+S+ + + G+ T TLADG V G +E
Sbjct: 202 TI---------HII--GVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNLTYEI 250
Query: 261 AAPLIDKM 268
L+D +
Sbjct: 251 VRELVDDI 258
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long
form. This model describes a form of threonine
ammonia-lyase, a pyridoxal-phosphate dependent enzyme,
with two copies of the threonine dehydratase C-terminal
domain (pfam00585). Members with known function
participate in isoleucine biosynthesis and are inhibited
by isoleucine. Alternate name: threonine deaminase,
threonine dehydratase. Forms scoring between the trusted
and noise cutoff tend to branch with this subgroup of
threonine ammonia-lyase phylogenetically but have only a
single copy of the C-terminal domain [Amino acid
biosynthesis, Pyruvate family].
Length = 499
Score = 176 bits (448), Expect = 5e-52
Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 18/246 (7%)
Query: 24 SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
K + LSE I +K++ Q SFK RGA + LS +QK +GVI+AS GNHAQ +
Sbjct: 21 QKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHAQGV 80
Query: 84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
+ +RL + +VMP P +K+ A R +G V++ GA+ +AK A++ E GLT+I
Sbjct: 81 AFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGANFDDAKAKAIELSQEKGLTFI 140
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHPDI 202
+ +D P ++AGQGT+ LEI+ QVAN +DA+ VPVGGGGL AGVA
Sbjct: 141 H----------PFDDPLVIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVA-----A 185
Query: 203 MAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAA 262
+ Q ++++ GVE A+ G+P + ADG+AV VG F
Sbjct: 186 LIKQLMPEIKVI--GVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQ 243
Query: 263 PLIDKM 268
+D +
Sbjct: 244 QYLDDI 249
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 165 bits (420), Expect = 2e-50
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 19/184 (10%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG--VISASLGNHAQAMCY 85
LS+L I+LK +F TGSFK+RGA +L+ E+ K +I ++ GN A+
Sbjct: 8 RLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAA 67
Query: 86 HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL-GLTYIN 144
+RL + T+VMP A K+ R GA V++ D +A +A + E G Y+N
Sbjct: 68 AAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVN 127
Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGLIAGVAY----D 198
+D+P +AGQGT+GLEI++Q+ DA+VVPVGGGG IAG+A
Sbjct: 128 ----------QFDNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKEL 177
Query: 199 HPDI 202
P++
Sbjct: 178 LPNV 181
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional.
Length = 317
Score = 166 bits (421), Expect = 8e-50
Identities = 85/221 (38%), Positives = 123/221 (55%), Gaps = 17/221 (7%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
LS+ T E++LK + Q TGSFK RGA L +L+E Q+++GVI+AS GNH Q +
Sbjct: 29 LSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASSGNHGQGVALAAK 88
Query: 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
IPVTV P A +K+ A R GA V + G D A+ A + + G YI+
Sbjct: 89 LAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYIS---- 144
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
Y+ P ++AGQGT+G+E+V+Q ++DA+ V VGGGGLI+G+A +
Sbjct: 145 ------PYNDPQVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSP---- 194
Query: 209 VGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLA 249
EI+ G S T+++ G+ V+ QPTL+DG A
Sbjct: 195 -KTEII--GCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTA 232
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 167 bits (424), Expect = 2e-49
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 25/228 (10%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
LS+++ E++LKK+ Q+TG++K RGA + LSE+QK+ GVI+AS GNHAQ +
Sbjct: 27 PFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVIAASAGNHAQGVAIS 86
Query: 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
+ I +VMP P++K+ + GA VI++G + EA AL+ E LT+I
Sbjct: 87 AKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNYDEAYAFALEYAKENNLTFI--- 143
Query: 147 LSSGLSVLGYDHP----DIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDI 202
HP ++MAGQGT+ LE++D+++++D +VVPVGGGGLI+G+A
Sbjct: 144 -----------HPFEDEEVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIA-----S 187
Query: 203 MAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAV 250
A Q ++I+ GV + + + K T+ADG+AV
Sbjct: 188 AAKQINPNIKII--GVGAKGAPAMYESFHAKKIINSKSVRTIADGIAV 233
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 161 bits (409), Expect = 6e-47
Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 31/251 (12%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
+LSE ++LK++ Q S+K RGA A+ LS+++ GV+ AS GNHAQ + Y
Sbjct: 33 YLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAAGVVCASAGNHAQGVAYAC 92
Query: 88 SRLNIPVTVVMPIVAPIMKIQACRRYGA---TVIVEGADMKEAKNIALKKGAELGLTYIN 144
L IP + MP+ P KI R +G +++ G ++ A + E G T+I
Sbjct: 93 RHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETGATFIP 152
Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV---ANIDAIVVPVGGGGLIAGV----AY 197
+D PD++AGQGTV +EI++Q+ + D + VPVGGGGLI+GV
Sbjct: 153 ----------PFDDPDVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKE 202
Query: 198 DHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNA 257
P +I+ GVE AS A++ GKP + DG AV VG
Sbjct: 203 RSPKT---------KII--GVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLT 251
Query: 258 FETAAPLIDKM 268
FE ++D +
Sbjct: 252 FEILKDVVDDV 262
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed.
Length = 521
Score = 162 bits (412), Expect = 1e-46
Identities = 88/239 (36%), Positives = 122/239 (51%), Gaps = 18/239 (7%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
LS ++ LK++ Q SFK RGA + L +Q +GVI+AS GNHAQ + +
Sbjct: 46 LSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHAQGVALAAA 105
Query: 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
RL + +VMP P +K+ R +G V++ G +A ALK E GLT++
Sbjct: 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFVP---- 161
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQ-VANIDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
+D PD++AGQGTV +EI+ Q +DAI VPVGGGGLIAG+A A
Sbjct: 162 ------PFDDPDVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIA-------AYVK 208
Query: 208 TVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLID 266
V EI GVE D A+ G+ + ADG+AV +G + FE +D
Sbjct: 209 YVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVD 267
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional.
Length = 322
Score = 158 bits (401), Expect = 1e-46
Identities = 78/220 (35%), Positives = 117/220 (53%), Gaps = 17/220 (7%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
LS + ++LK + Q TGSFK RGA ALL LS ++ +GV++AS GNH +A+ Y
Sbjct: 28 LSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAAR 87
Query: 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
L I T+ M + P K+ A R GA V + G +A+ + E GLT +
Sbjct: 88 ALGIRATICMSRLVPANKVDAIRALGAEVRIVGRSQDDAQAEVERLVREEGLTMVP---- 143
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
+D P I+AGQGT+GLEI++ + ++ ++VP+ GGGL +GVA I
Sbjct: 144 ------PFDDPRIIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRV 197
Query: 209 VGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGL 248
+G+ + +R A+ ++ G+P V PTLAD L
Sbjct: 198 IGVSM-------ERGAAMHASLAAGRPVQVEEVPTLADSL 230
>gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated.
Length = 321
Score = 155 bits (393), Expect = 2e-45
Identities = 84/245 (34%), Positives = 121/245 (49%), Gaps = 25/245 (10%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
T ++F K + FQ G+FK RGA AL S +Q++ GV++ S GNHAQA+
Sbjct: 33 ADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGVVTFSSGNHAQAIALSAR 92
Query: 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
L IP T+VMP AP K+ A R YG V+ ++ + I + E GLT I
Sbjct: 93 LLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIP---- 148
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
YDHP ++AGQGT E+ ++V +DA+ V +GGGGL++G A + A +
Sbjct: 149 ------PYDHPHVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCA-----LAARALS 197
Query: 209 VGLEIVDQGVE----SDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPL 264
G ++ GVE +D SF + TP T+ADG +G F L
Sbjct: 198 PGCKVY--GVEPEAGNDGQQSFRSGEIVHIDTP----RTIADGAQTQHLGNYTFPIIRRL 251
Query: 265 IDKMF 269
+D +
Sbjct: 252 VDDIV 256
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional.
Length = 310
Score = 151 bits (383), Expect = 3e-44
Identities = 82/226 (36%), Positives = 112/226 (49%), Gaps = 22/226 (9%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
++LK + Q TGSFK RGA LL + GV++AS GN A+ Y + L +P T
Sbjct: 38 PVWLKLEHLQHTGSFKARGAFNRLL--AAPVPAAGVVAASGGNAGLAVAYAAAALGVPAT 95
Query: 96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLG 155
V +P AP K+ R GA V+V GA+ +A A AE G + Y
Sbjct: 96 VFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAAETGALLCHAY--------- 146
Query: 156 YDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVD 215
D P+++AG GT+GLEI +Q +D ++V VGGGGLIAG+A +G +V
Sbjct: 147 -DQPEVLAGAGTLGLEIEEQAPGVDTVLVAVGGGGLIAGIA------AWFEGRA--RVV- 196
Query: 216 QGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETA 261
VE + + A+ G+P V V AD L VG AF A
Sbjct: 197 -AVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALA 241
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 155 bits (394), Expect = 1e-43
Identities = 91/239 (38%), Positives = 126/239 (52%), Gaps = 18/239 (7%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
LSE +++ LK++ Q SFK RGA + L ++Q KGVI +S GNHAQ +
Sbjct: 118 LSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQGVALSAQ 177
Query: 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
RL + MP+ P +K Q+ R GATV++ G EA+ A ++ E G T+I
Sbjct: 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRALEEGRTFIP---- 233
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
+DHPD++AGQGTVG+EIV Q + AI VPVGGGGLIAG+A A
Sbjct: 234 ------PFDHPDVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIA-------AYVK 280
Query: 208 TVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLID 266
V E+ GVE + + ++ HG+ + ADG+AV VG F L+D
Sbjct: 281 RVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVD 339
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase. This model represents
threonine dehydratase, the first step in the pathway
converting threonine into isoleucine. At least two other
clades of biosynthetic threonine dehydratases have been
charcterized (TIGR01124 and TIGR01127). Those sequences
described by this model are exclusively found in species
containg the rest of the isoleucine pathway and which
are generally lacking in members of the those other two
clades of threonine dehydratases. Members of this clade
are also often gene clustered with other elements of the
isoleucine pathway [Amino acid biosynthesis, Pyruvate
family].
Length = 409
Score = 151 bits (383), Expect = 2e-43
Identities = 82/248 (33%), Positives = 115/248 (46%), Gaps = 21/248 (8%)
Query: 25 KKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMC 84
LSE I+LK++ Q S+K RGA L LS+ Q KGV+ AS GNHAQ
Sbjct: 21 LNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQGFA 80
Query: 85 YHGSRLNIPVTVVMPIVAPIMKIQACRRYGAT---VIVEGADMKEAKNIALKKGAELGLT 141
Y L + TV MP P KI + +G +I+ G + A + + G T
Sbjct: 81 YACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDHGGT 140
Query: 142 YINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHP 200
+I +D P I+ GQGTV EI+DQ+ D +VVPVGGGGLI+G+
Sbjct: 141 FIP----------PFDDPRIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLT---- 186
Query: 201 DIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFET 260
+AG I GVE + S +++ G+ + DG AV VG F+
Sbjct: 187 TYLAGTSPKTKII---GVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKA 243
Query: 261 AAPLIDKM 268
+ D++
Sbjct: 244 LKDVPDEV 251
>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional.
Length = 406
Score = 150 bits (380), Expect = 6e-43
Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 19/253 (7%)
Query: 14 GFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVIS 73
G++ R +S + +I+ K + FQ TGSFK RGA + LSED+ + GVI+
Sbjct: 21 GYLNRTPLIHSTT--FGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGVIT 78
Query: 74 ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALK 133
AS GNHAQ + Y S I +VMP K+ A YGA VI+ G D EA A K
Sbjct: 79 ASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRDYDEAHRYADK 138
Query: 134 KGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIA 193
+ T+I ++ +++GQGT+GLEI++ + ++D I+VPVGGGGLI+
Sbjct: 139 IAMDENRTFIE----------AFNDRWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLIS 188
Query: 194 GVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLV 253
G+A A ++I+ G+ES+ S +++ GK + ++ DG++V
Sbjct: 189 GIAL-----AAKHINPNVKII--GIESELSDSMKASLREGKIVAHTSGVSICDGISVKYP 241
Query: 254 GWNAFETAAPLID 266
G F+ A +D
Sbjct: 242 GDLTFDIAKNYVD 254
>gnl|CDD|215524 PLN02970, PLN02970, serine racemase.
Length = 328
Score = 145 bits (367), Expect = 1e-41
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 10/170 (5%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
S L L +F K + FQ G+FK RGAC A+ LS+DQ +KGV++ S GNHA A+
Sbjct: 34 SSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAAALALA 93
Query: 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
IP +V+P AP K+ A RYG + ++ + +A + E G I+
Sbjct: 94 AKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPTVESREAVAARVQQETGAVLIH-- 151
Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA 196
Y+ +++GQGT+ LE ++QV +D I+VP+ GGGLI+G+A
Sbjct: 152 --------PYNDGRVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIA 193
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 144 bits (365), Expect = 1e-41
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 28/239 (11%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
++LK + TGSFK+RGA Y LL ++ V+ AS GN +A+ +RL + VT
Sbjct: 21 RVYLKLESLNPTGSFKDRGAAYLLL--RALERGATVVEASSGNTGRALAAAAARLGLKVT 78
Query: 96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLG 155
+V+P A K+ R GA VI+ ++ + AE + Y + +
Sbjct: 79 IVVPEGASPGKLLLMRALGAEVILVVSEGDYD---DALELAEEAAELLAAYD-GPIPLGQ 134
Query: 156 YDHPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGLIAGVA----YDHPDIMAGQGTV 209
Y++P+++AG T+GLEI++Q+ + DA+VVPVGGGGL AG+A P I
Sbjct: 135 YNNPNVIAGYKTIGLEILEQLGQGDPDAVVVPVGGGGLAAGIARGLKELGPGI------- 187
Query: 210 GLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKM 268
++ GVE + + + +++ G+ P PT GL + E A LID+
Sbjct: 188 --RVI--GVEPEGAPALARSLEAGRRVPK---PTTIAGLGPGIP--LDGELALELIDEY 237
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB. Members
of this protein family are EutB, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida.
Members of this family resemble threonine dehydratases.
Length = 317
Score = 142 bits (360), Expect = 9e-41
Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 19/223 (8%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
LSEL + + LK + Q TGSFK RGA A+L LS+ Q+ GV++AS GNH +A+ Y
Sbjct: 26 PSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAGVVAASTGNHGRALAYA 85
Query: 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
+ + T+ M + P K+ RR GA V + G +A+ + A+ GLT +
Sbjct: 86 AAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRSQDDAQEEVERLVADRGLTMLP-- 143
Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQ 206
+DHPDI+AGQGT+GLE+V+Q+ ++ ++VP+ GGGL +GVA MA +
Sbjct: 144 --------PFDHPDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVA------MAVK 189
Query: 207 G-TVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGL 248
++ GV +R A+ +++ G+P V+ PTLAD L
Sbjct: 190 AARPDTRVI--GVSMERGAAMKASLQAGRPVLVAELPTLADSL 230
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional.
Length = 338
Score = 122 bits (307), Expect = 9e-33
Identities = 72/236 (30%), Positives = 105/236 (44%), Gaps = 22/236 (9%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKK-KGVISASLGNHAQAMCY 85
L+E+ EIF K + Q TG+FK RG LL L E K +++ S GNH QA+ Y
Sbjct: 30 ESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAY 89
Query: 86 HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
I + +P+ +K QA YG VI+ +EA+ K+ E G YI+
Sbjct: 90 ASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILT-NTRQEAEE-KAKEDEEQGFYYIH- 146
Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMA 204
D +AG GT+ E + Q+ + DAI GGGGLI+G +A
Sbjct: 147 ---------PSDSDSTIAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGT------YLA 191
Query: 205 GQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP-TLADGLAVPLVGWNAFE 259
+ ++ G E ++K+ K ++ P T+ADGL V FE
Sbjct: 192 KELISPTSLL-IGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFE 246
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional.
Length = 349
Score = 117 bits (295), Expect = 5e-31
Identities = 87/234 (37%), Positives = 122/234 (52%), Gaps = 30/234 (12%)
Query: 37 IFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96
++LK + Q TGS+K RGA ALL E ++ VI AS GNHAQ + + RL +
Sbjct: 50 VWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAIT 109
Query: 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY--LSSGLSVL 154
VMP AP KI +GATV G EA A + L NGY LS+
Sbjct: 110 VMPHGAPQTKIAGVAHWGATVRQHGNSYDEAYAFARE------LADQNGYRFLSA----- 158
Query: 155 GYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT--VGLE 212
+D PD++AGQGTVG+E+ D ++VP+GGGGL +GVA + QG VG +
Sbjct: 159 -FDDPDVIAGQGTVGIELAAHAP--DVVIVPIGGGGLASGVAL----ALKSQGVRVVGAQ 211
Query: 213 IVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLID 266
+ +GV+ S + AI+ G ++ TLADG+ V + G+ + L+D
Sbjct: 212 V--EGVD-----SMARAIR-GDLREIAPVATLADGVKVKIPGFLTRRLCSSLLD 257
>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate
(PLP)-dependent enzyme which catalyzes the conversion of
L- , D-serine, or L-threonine to pyruvate/ketobutyrate
and ammonia.
Length = 316
Score = 116 bits (293), Expect = 6e-31
Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 27/242 (11%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKK--GVISASLGNHAQAMCYH 86
LS+ +FLK + Q +GSFK RG + ++ + V+ +S GN A Y
Sbjct: 10 LSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYA 69
Query: 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKK---GAELGLTYI 143
+L +P T+V+P ++ R GATV+V G EA N L++ + G Y+
Sbjct: 70 ARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVHGKVWWEADN-YLREELAENDPGPVYV 128
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN---IDAIVVPVGGGGLIAGVAYDHP 200
+ +D P I G ++ EI Q+ + +DAIV VGGGGL+ G
Sbjct: 129 H----------PFDDPLIWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNG------ 172
Query: 201 DIMAGQGTVGLEIVD-QGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
I+ G G + VE++ S + ++K GK + ++A L V A E
Sbjct: 173 -IVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALE 231
Query: 260 TA 261
A
Sbjct: 232 YA 233
>gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional.
Length = 322
Score = 99.7 bits (249), Expect = 2e-24
Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 23/234 (9%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGA-CYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
L+E E+++K + TG+FK RG Y + + +GVISA+ GNH Q++ +
Sbjct: 30 LAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVAFAA 89
Query: 88 SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
R + T+V+P + K A R GA +I G D + A+ A + AE GL + +
Sbjct: 90 RRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGEDFQAAREEAARLAAERGLHMVPSF- 148
Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
HPD++ G T LE+ V ++D + VP+G G I G A +
Sbjct: 149 ----------HPDLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAI-------AARD 191
Query: 208 TVGL--EIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
+GL IV GV S +++ + + G+ V TLADG+A A E
Sbjct: 192 ALGLKTRIV--GVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALE 243
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 98.4 bits (246), Expect = 4e-24
Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 31/227 (13%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
+++K + TGSFK+RG A+ E K V AS GN + ++ + +R I
Sbjct: 39 NLYVKDEGLNPTGSFKDRGMTVAVSKAKE-LGVKAVACASTGNTSASLAAYAARAGIKCV 97
Query: 96 VVMPIVAPIMKIQACRRYGATVI-VEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVL 154
V +P + K+ YGATV+ VEG + +A + + E YLS+
Sbjct: 98 VFLPAGKALGKLAQALAYGATVLAVEG-NFDDALRLVRELAEENW-----IYLSN----- 146
Query: 155 GYDHPDIMAGQGTVGLEIVDQVANI--DAIVVPVGGGGLIAGVAYDHPDIMAG-QGTVGL 211
+P + GQ T+ EI +Q+ D +VVPVG GG I I G + L
Sbjct: 147 -SLNPYRLEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITA-------IWKGFKELKEL 198
Query: 212 EIVDQ-----GVESDRCASFSTAIKHGK--PTPVSVQPTLADGLAVP 251
++D+ GV+++ A A K GK PV T+A + +
Sbjct: 199 GLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIG 245
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 77.0 bits (190), Expect = 5e-16
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 32 LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLN 91
+ +++K+ TGSFK+RG + + E K ++ AS GN + + +R
Sbjct: 91 VLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKEL-GAKTILCASSGNTGASAAAYAARAG 149
Query: 92 IPVTVVMP--IVAPIMKIQACRRYGATVI-VEGADMKEAKNIALKKGAELGLTYINGYLS 148
+ V V+ P V+P Q GA VI V+G + +A+ + K+ A G LS
Sbjct: 150 LKVFVLYPKGKVSPGKLAQML-TLGAHVIAVDG-NFDDAQELV-KEAANR-----EGLLS 201
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANI--DAIVVPVGGGGLIAGV--AYDHPDIMA 204
+ S+ +P + GQ T EI +Q+ D +VVPVG GG + + +
Sbjct: 202 AVNSI----NPYRLEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKE----- 252
Query: 205 GQGTVGLEI-------VDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP 251
GL I GV+++ + A K G+ TP T+A + +
Sbjct: 253 -----GLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPE----TIAPAMDIG 297
>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated.
Length = 347
Score = 74.9 bits (184), Expect = 2e-15
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
+++ K D+ Q TGSFK+RG + L E+ + VI +S GN A ++ + I V
Sbjct: 73 KVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGINEVVIDSS-GNAALSLALYSLSEGIKVH 131
Query: 96 VVMPIVAPIMKIQACRRYGATV-IVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVL 154
V + A KI R GA + VEG M+ + A+K + Y++ +L+
Sbjct: 132 VFVSYNASKEKISLLSRLGAELHFVEGDRMEVHEE-AVKFSKRNNIPYVSHWLN------ 184
Query: 155 GYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGV 195
P + G T+ EI +Q+ D VPVG G L G+
Sbjct: 185 ----PYFLEGTKTIAYEIYEQIGVPDYAFVPVGSGTLFLGI 221
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 71.4 bits (175), Expect = 3e-14
Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 34/234 (14%)
Query: 26 KSHLSELTKMEIFLKKDFFQVTGSFKERGAC----YALLMLSEDQKKKGVISASLGNHAQ 81
++ +SE +++K + TGSF++R A Y L G I AS GN A
Sbjct: 71 RARISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGL-----PYAANGFIVASDGNAAA 125
Query: 82 AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLT 141
++ + +R VV+P K+ +GA +I G + EA A + GL
Sbjct: 126 SVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGESVDEAIEYAEELARLNGLY 185
Query: 142 YINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPD 201
+ + +++G + GQ T+ E+ +++ N ++VP G G + + +
Sbjct: 186 NV----TPEYNIIG------LEGQKTIAFELWEEI-NPTHVIVPTGSGSYLYSIYKGFKE 234
Query: 202 IMAGQGTVGLEIVDQ-----GVESDRCASFSTAIKHGKPTPVSVQPTLADGLAV 250
++ +G ++++ V+++RC ++ I G T T A GL V
Sbjct: 235 LL----EIG--VIEEIPKLIAVQTERCNPIASEI-LGNKT--KCNETKALGLYV 279
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 68.3 bits (168), Expect = 2e-13
Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG-------VISASLGNHA 80
LS T EI+ K +FF GS K+R A Y + ED +K+G +I + GN
Sbjct: 10 RLSPGTGAEIYAKLEFFNPGGSVKDRIALYMI----EDAEKRGLLKPGTTIIEPTSGNTG 65
Query: 81 QAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI-VEGADMKEAKNIALKKGAELG 139
+ + +VMP K + R GA VI A+ K A+ K EL
Sbjct: 66 IGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKG-AIAKARELA 124
Query: 140 LTYINGYLSSGLSVLGYDHPD-IMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVA 196
N + + +++P A T EI +Q+ +DA V VG GG I GVA
Sbjct: 125 AETPNAFWLN-----QFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVA 178
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated.
Length = 394
Score = 65.8 bits (161), Expect = 2e-12
Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
+++K + TGSFK RG + E K + + GN A + +R I T
Sbjct: 96 RLWVKDEGLNPTGSFKARGLAVGVSRAKE-LGVKHLAMPTNGNAGAAWAAYAARAGIRAT 154
Query: 96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLG 155
+ MP AP + C GA + + + +A I + AE G + S L
Sbjct: 155 IFMPADAPEITRLECALAGAELYLVDGLISDAGKIVAEAVAEYGW-----FDVSTLK--- 206
Query: 156 YDHPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGG-GLI 192
P + G+ T+GLE+ +Q+ D I+ P GGG GLI
Sbjct: 207 --EPYRIEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLI 244
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 61.0 bits (149), Expect = 6e-11
Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 20/187 (10%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK-KKG--VISASLGNHAQAMC 84
LS T +EI+ K + F GS K+R A Y + + K G ++ A+ GN A+
Sbjct: 19 RLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALA 78
Query: 85 YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI-VEGAD--MKEAKNIALKKGAELGLT 141
+ + +VMP + + R GA VI GA MK A A + AE+
Sbjct: 79 MVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGY 138
Query: 142 YIN-GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVA--- 196
+ + + + T G EI Q +DA V VG GG I GVA
Sbjct: 139 AVWLNQFENPANPEAHYE--------TTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYL 190
Query: 197 -YDHPDI 202
+P++
Sbjct: 191 KERNPNV 197
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 59.2 bits (144), Expect = 4e-10
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 25/157 (15%)
Query: 47 TGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPI--VAPI 104
TGSFK+RG + E K V AS GN + ++ + +R + V++P VA +
Sbjct: 95 TGSFKDRGMTVGVTKALELGVKT-VACASTGNTSASLAAYAARAGLKCYVLLPAGKVA-L 152
Query: 105 MKIQACRRYGATVI-VEG---ADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD 160
K+ +GA V+ V+G + +A + L L IN P
Sbjct: 153 GKLAQALLHGAKVLEVDGNFDDALDMVVELAKEGKIYL-LNSIN--------------PF 197
Query: 161 IMAGQGTVGLEIVDQVANI--DAIVVPVGGGGLIAGV 195
+ GQ T+G EI DQ+ D +V+PVG G I+ +
Sbjct: 198 RLEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAI 234
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the model
[Amino acid biosynthesis, Aspartate family].
Length = 328
Score = 56.6 bits (137), Expect = 2e-09
Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 34/234 (14%)
Query: 30 SELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSR 89
+ + +++ + F T SFK+RG AL E V+ AS GN A + +
Sbjct: 34 ANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALEL-GNDTVLCASTGNTGAAAAAYAGK 92
Query: 90 LNIPVTVVMP--IVAPIMKIQACRRYGATVIVEGADMKEAKNI---ALKKGAELGLTYIN 144
+ V ++ P ++ QA Y A V+ + +A+ + LGL +N
Sbjct: 93 AGVKVVILYPAGKISLGKLAQAL-GYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNSVN 151
Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI--DAIVVPVGGGGLIAGVAYDHPDI 202
S+ + GQ T E V+Q+ D +VVPV G I
Sbjct: 152 -------SIPYR-----LEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFG-------AI 192
Query: 203 MAG---QGTVGLEI--VDQGVESDRCASFSTA-IKHGKPTPVSVQPTLADGLAV 250
+ G + GL+ V +G++++ A A ++ G+ P+ TL+ + +
Sbjct: 193 LKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDI 246
>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated.
Length = 351
Score = 53.9 bits (129), Expect = 2e-08
Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
+LS+ + ++ K + TGSFK+RG A+ E + + VI AS GN + A +
Sbjct: 36 NLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKE-EGAEAVICASTGNTSAAAAAYA 94
Query: 88 SRLNIPVTVVMPI-VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
+R + +V+P + K+ YGA +I + E ALK EL T
Sbjct: 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGNFDE----ALKSVRELAET----- 145
Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGVAYDHPDIMAG 205
++++ +P + GQ T EI +Q+ + D + +PVG G I+ +
Sbjct: 146 --EAVTLVNSVNPYRLEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEA 203
Query: 206 QGTV----------GLEIVDQGVESDRCASFSTAIKHGKP 235
+ + G + QG D + +TAI+ G P
Sbjct: 204 KASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNP 243
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 52.8 bits (126), Expect = 5e-08
Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 28/222 (12%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
++S+ ++++ K + TGSFK+RG A+ E + + +I AS GN + + +
Sbjct: 36 NISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKE-EGSEAIICASTGNTSASAAAYA 94
Query: 88 SRLNIPVTVVMPIVAPIM--KIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
+RL + +V+P I K+ YGA +I + +A AE +T +N
Sbjct: 95 ARLGMKCIIVIP-EGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNS 153
Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGV--------- 195
+P + GQ T EI DQ+ D + +PVG G I
Sbjct: 154 V-----------NPYRIEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEK 202
Query: 196 --AYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP 235
Y P I + IV +G D + +TAI+ G P
Sbjct: 203 EKGYKKPRIHGFEAEGAAAIV-KGHVIDEPETIATAIRIGNP 243
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 51.8 bits (125), Expect = 1e-07
Identities = 50/192 (26%), Positives = 69/192 (35%), Gaps = 41/192 (21%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG-------VISASLGNHA 80
SE T EI K +F GS K+R A L + D +K+G ++ + GN
Sbjct: 21 RASEATGCEILGKAEFLNPGGSVKDRAA----LNIIWDAEKRGLLKPGGTIVEGTAGNTG 76
Query: 81 QAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI-VEGADMKEAKN---IALKKGA 136
+ + +VMP K R GA ++ V A N A +
Sbjct: 77 IGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAE 136
Query: 137 ELGLTYINGYLSSGLSVLGYDHPDIMAGQ-----------GTVGLEIVDQVA-NIDAIVV 184
EL + NG I A Q T G EI +Q +D V
Sbjct: 137 ELVASEPNGA--------------IWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVC 182
Query: 185 PVGGGGLIAGVA 196
VG GG +AGV+
Sbjct: 183 AVGTGGTLAGVS 194
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 50.7 bits (122), Expect = 2e-07
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 18/176 (10%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK--KKG--VISASLGNHAQAMC 84
L+ + K + +GS K+R A +++ +E + K G +I A+ GN A+
Sbjct: 16 LAPGCDARVLAKLEGRNPSGSVKDRIA-LSMIEDAEKRGLLKPGDTIIEATSGNTGIALA 74
Query: 85 YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI-VEGAD-MKEAKNIALKKGAELGLTY 142
+ + + MP + + + R YGA +I + MK A + A + AE
Sbjct: 75 MVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETN--- 131
Query: 143 INGYLSSGLSVLGYDHPD-IMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVA 196
+ + +++P A T G EI ID V VG GG I GV
Sbjct: 132 ------KYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVG 181
>gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional.
Length = 399
Score = 49.9 bits (120), Expect = 6e-07
Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 56/247 (22%)
Query: 48 GSFKERGACYALL------------------MLSEDQKKKG----VISASLGNHAQAMCY 85
+FK G YA+ + S + ++K +A+ GNH + + +
Sbjct: 74 NAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGNHGRGVAW 133
Query: 86 HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
+L + MP + ++ A R GA I+ + ++ +A ++ E G
Sbjct: 134 AAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGNYDDSVRLAAQEAQENG-----W 188
Query: 146 YLSSGLSVLGYDHP--DIMAGQGTVGLEIVDQVANIDA----IVVPVGGGGLIAGVA-Y- 197
+ + GY+ IM G GT+ E V+Q+ + + + G G L V Y
Sbjct: 189 VVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYF 248
Query: 198 -----DHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQ-PTLADGLA-- 249
+ +V VE D+ + GKP V+ T+ GLA
Sbjct: 249 AEVYGEQRPHF---------VV---VEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACG 296
Query: 250 -VPLVGW 255
+ W
Sbjct: 297 EPNPLAW 303
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 48.3 bits (116), Expect = 2e-06
Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 24/176 (13%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGN-HAQAMCYH 86
+LSEL +E+++K + TGSFK+RG A+ E+ K VI AS GN A A Y
Sbjct: 39 NLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEE-GAKAVICASTGNTSASAAAY- 96
Query: 87 GSRLNIPVTVVMP--IVAPIMKI-QACRRYGATVI-VEGADMKEAKNIALKKGAELGLTY 142
+R + V++P +A + K+ QA YGA +I ++G + +A I + + +T
Sbjct: 97 AARAGLKAFVLIPEGKIA-LGKLAQAV-MYGAEIIQIDG-NFDDALEIVRELAEKYPVTL 153
Query: 143 INGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGVAY 197
+N SV +P + GQ T EIVD + + D +PVG G I AY
Sbjct: 154 VN-------SV----NPYRIEGQKTAAFEIVDALGDAPDYHCIPVGNAGNIT--AY 196
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 47.0 bits (112), Expect = 3e-06
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 25/166 (15%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
I+ K DF TGS+K+RG+ + L+ ++ K + S GN ++ +G+ I V
Sbjct: 66 NIWFKLDFLNPTGSYKDRGSVTLISYLA-EKGIKQISEDSSGNAGASIAAYGAAAGIEVK 124
Query: 96 VVMPIVAPIMKIQACRRYGATVI-VEGA--DM-KEAKNIALKKGAELGLTYINGYLSSGL 151
+ +P A K++ YGA V+ V G+ D+ K A+N +GY +
Sbjct: 125 IFVPETASGGKLKQIESYGAEVVRVRGSREDVAKAAEN--------------SGYYYAS- 169
Query: 152 SVLGYDHPDIMAGQGTVGLEIVDQVAN--IDAIVVPVGGGGLIAGV 195
VL P G T+ EI + + + +PV G L+ GV
Sbjct: 170 HVL---QPQFRDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGV 212
>gnl|CDD|178182 PLN02569, PLN02569, threonine synthase.
Length = 484
Score = 46.7 bits (111), Expect = 5e-06
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 32/162 (19%)
Query: 47 TGSFKERGACYALLMLSEDQKKK----GVISASLGNHAQAMCYHGSRLNIPVTVVMP--- 99
TGSFK+ G + ++ +K GV AS G+ + A+ + + IP V +P
Sbjct: 162 TGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADK 221
Query: 100 -----IVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVL 154
+V PI GA V+ D + + AEL YL++ L+ L
Sbjct: 222 ISIAQLVQPIAN-------GALVLSIDTDFDGCMRLIREVTAEL-----PIYLANSLNSL 269
Query: 155 GYDHPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGLIAG 194
+ GQ T +EI+ Q D ++VP G G I
Sbjct: 270 R------LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYA 305
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 46.6 bits (111), Expect = 5e-06
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSEDQK--KKGV--ISASLGNHAQAMCYHGSRLN 91
+F+K + +GS K+R A ++ +E + K G + + GN A+ +
Sbjct: 22 NVFVKLEGRNPSGSVKDRIA-LNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARG 80
Query: 92 IPVTVVMPIVAPIMKIQACRRYGATVIV-EGAD-MKEAKNIALKKGAELGLTYINGYLSS 149
+ + MP I + + + YGA +++ GA+ MK A + K E+ + N Y
Sbjct: 81 YKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGA----IAKAEEIAASTPNSYFM- 135
Query: 150 GLSVLGYDHP-DIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVA 196
+ +++P + + T G EI +DA V VG GG I GV
Sbjct: 136 ---LQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVG 181
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 44.3 bits (105), Expect = 3e-05
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 33/236 (13%)
Query: 37 IFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96
I+LK + TG+ K+R A A + + G+ + GN+ ++ Y + +
Sbjct: 33 IYLKFEGANPTGTQKDRIA-EAHVRRAMRLGYSGITVGTCGNYGASIAYFARLYGLKAVI 91
Query: 97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGY 156
+P +++ +YGA +I +EA + K E G+ Y ++ SV
Sbjct: 92 FIPRSYSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFAKENGI-----YDANPGSV--N 144
Query: 157 DHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGV------AYDH------PDIM 203
DI A + EI + + ++ DA+ VPVG G +AG+ YD P ++
Sbjct: 145 SVVDIEA-YSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMI 203
Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
+ G +IV+ SF + + V + PLV + +F+
Sbjct: 204 GVSTSGGNQIVE---------SFKRGSS--EVVDLEVDEIRETAVNEPLVSYRSFD 248
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. CysM differs from CysK in
that it can also use thiosulfate instead of sulfide, to
produce cysteine thiosulfonate instead of cysteine.
Alternate name: O-acetylserine (thiol)-lyase [Amino acid
biosynthesis, Serine family].
Length = 290
Score = 41.1 bits (96), Expect = 3e-04
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 33 TKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKK------KGVISASLGNHAQAMCYH 86
E++LK + GS K+R A L M+ E +K+ +I A+ GN A+
Sbjct: 21 NGSEVWLKLEGNNPAGSVKDRPA---LSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMI 77
Query: 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV----EGADMKEAKNIALKKGAELGLTY 142
+ + ++MP + A R YGA +I+ EG M+ A+++AL EL
Sbjct: 78 AALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEG--MEGARDLAL----ELANRG 131
Query: 143 INGYLSSGLSVLGYDHPD-IMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVA 196
L +++PD A + G EI Q I V +G G I GV+
Sbjct: 132 EGKLLDQ------FNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVS 181
>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase.
Length = 368
Score = 41.1 bits (96), Expect = 3e-04
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 37 IFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISA--------SLGNHAQAMCYHGS 88
I K++ FQ T S K+R A L + ED +KK +I+ + GN ++ + +
Sbjct: 76 IAAKQEMFQPTSSIKDRPA----LAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAA 131
Query: 89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
+ + MP + + R +GA +++ D + +KK EL + + ++
Sbjct: 132 MKGYKMILTMPSYTSLERRVTMRAFGAELVL--TDPTKGMGGTVKKAYELLESTPDAFML 189
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEI-VDQVANIDAIVVPVGGGGLIAGV 195
S + + T G EI D + +D V+ +G GG ++GV
Sbjct: 190 QQFS----NPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGV 233
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like
enzyme. This model represents a family of
pyridoxal-phosphate dependent enzyme (pfam00291) closely
related to the beta subunit of tryptophan synthase
(TIGR00263). However, the only case in which a member of
this family replaces a member of TIGR00263 is in
Sulfolobus species which contain two sequences which hit
this model, one of which is proximal to the alpha
subunit. In every other case so far, either the species
appears not to make tryptophan (there is no trp synthase
alpha subunit), or a trp synthase beta subunit matching
TIGR00263 is also found [Unknown function, Enzymes of
unknown specificity].
Length = 419
Score = 39.8 bits (93), Expect = 0.001
Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 27/197 (13%)
Query: 33 TKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI 92
T I+ K + TGS K A + K+ V G A+ G+ +
Sbjct: 83 TPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGALFGL 142
Query: 93 PVTVVM--------PIVAPIMKIQACR---------RYGATVIVEGADMKEAKNIALKKG 135
V M P +M++ +G V+ E D + IA+ +
Sbjct: 143 ECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEA 202
Query: 136 AELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI----DAIVVPVGGGGL 191
E L+ + S G SVL + + Q +GLE Q+ D I+ VGGG
Sbjct: 203 IEYALSDEDTKYSLG-SVLNHV----LLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSN 257
Query: 192 IAGVAYDH-PDIMAGQG 207
AG+A+ D ++G+
Sbjct: 258 FAGLAFPFVADKLSGKI 274
>gnl|CDD|163556 TIGR03844, cysteate_syn, cysteate synthase. Members of this family
are cysteate synthase, an enzyme of alternate pathway to
sulfopyruvate, a precursor of coenzyme M [Biosynthesis
of cofactors, prosthetic groups, and carriers, Other,
Energy metabolism, Methanogenesis].
Length = 398
Score = 39.7 bits (93), Expect = 0.001
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 44 FQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99
F T SFKE A + L E K V+ AS GN +A + PV +V+P
Sbjct: 94 FMRTCSFKELEALPTMQRLKERGGKTLVV-ASAGNTGRAFAEVSAITGQPVILVVP 148
>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family.
This small subfamily includes diaminopropionate
ammonia-lyase from Salmonella typhimurium and a small
number of close homologs, about 50 % identical in
sequence. The enzyme is a pyridoxal phosphate-binding
homodimer homologous to threonine dehydratase (threonine
deaminase) [Energy metabolism, Other].
Length = 376
Score = 39.5 bits (92), Expect = 0.001
Identities = 38/200 (19%), Positives = 76/200 (38%), Gaps = 36/200 (18%)
Query: 27 SHLSELTKMEIFLKKDFFQVTG--SFKERGACYALLMLSEDQKKKGV------------- 71
HL+ L ++ L KD + G +FK G YA+ ++ +
Sbjct: 29 DHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAI 88
Query: 72 ---------ISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122
+A+ GNH + + + +L V MP + +++ GA +
Sbjct: 89 GEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM 148
Query: 123 DMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDH-PD-IMAGQGTVGLEIVDQVANID 180
+ + +A++ + G + + GY+ P IM G T+ E V+Q+ +
Sbjct: 149 NYDDTVRLAMQMAQQHG-----WVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMG 203
Query: 181 A-----IVVPVGGGGLIAGV 195
+ +++ G G + GV
Sbjct: 204 SVTPTHVLLQAGVGSMAGGV 223
>gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase. Members
of this protein family are the homodimeric, pyridoxal
phosphate enzyme diaminopropionate ammonia-lyase, which
adds water to remove two amino groups, leaving pyruvate.
Length = 396
Score = 36.2 bits (84), Expect = 0.015
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 72 ISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIA 131
++A+ GNH + + + ++L V MP + +++ R GA + + +A +A
Sbjct: 117 VTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQERLENIRAEGAECTITDLNYDDAVRLA 176
Query: 132 LKKGAELGL-----TYINGYLSSGLSVLGYDHPD-IMAGQGTVGLEIVDQVA 177
K E G T GY P IM G GT+ LE ++Q+
Sbjct: 177 WKMAQENGWVMVQDTAWEGY---------EKIPTWIMQGYGTLALEALEQLK 219
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 35.9 bits (83), Expect = 0.017
Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 19/219 (8%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
LS++ I+LK++ TGS K A L+ K + + G H A +
Sbjct: 280 LSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACA 339
Query: 89 RLNIPVTVVM---PIVAPIMKIQACRRYGATVIV---EGADMKEAKNIALKKGAELGLTY 142
+ T+ M I + ++ + GA VI +K+A N A++ + +
Sbjct: 340 LFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIR---DWVASV 396
Query: 143 INGYLSSGLSVLGYDHPDIMAG-QGTVGLEIVDQVANI-----DAIVVPVGGGGLIAGVA 196
+ + G +V + +P+++A Q +G E +Q+ DAI+ VGGG G+
Sbjct: 397 PDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIF 456
Query: 197 YDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP 235
Y D + + +G+E +GV + A+ IK G+
Sbjct: 457 YHFLDDPSVK-LIGVEAGGKGVNTGEHAA---TIKKGRK 491
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase
beta-subunit (paralog of TrpB) [General function
prediction only].
Length = 432
Score = 35.8 bits (83), Expect = 0.020
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 30/188 (15%)
Query: 33 TKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI 92
T I+ K + TGS K A ++ K+ G A+ + +
Sbjct: 93 TPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWGSALSLAAALFGL 152
Query: 93 PVTVVMPIVAPIMKIQACRR-----YGATVIVEGADMKE------AKN--------IALK 133
TV M V+ K R+ YGA V+ +++ E ++ IA+
Sbjct: 153 KATVFMVRVSYYQKPY--RKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAIS 210
Query: 134 KGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI----DAIVVPVGGG 189
+ E L N S G SVL +H ++ Q +GLE Q+ D I+ VGGG
Sbjct: 211 EAIEYALKNENTKYSLG-SVL--NH-VLLH-QTVIGLEAKKQLEQAGEDPDVIIGCVGGG 265
Query: 190 GLIAGVAY 197
AG+ Y
Sbjct: 266 SNFAGLTY 273
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 34.8 bits (81), Expect = 0.030
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 17/63 (26%)
Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGG----GLIAGVAYDH 199
S+ L LGY + EI Q+A + DA+VV G G GL AG+A
Sbjct: 158 SNALGALGY----VACAL-----EIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALG 208
Query: 200 PDI 202
PDI
Sbjct: 209 PDI 211
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein
SbnA. Members of this family include SbnA, a protein of
the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of certain
siderophores and other secondary metabolites. SbnA is a
pyridoxal phosphate-dependent enzyme [Cellular
processes, Biosynthesis of natural products].
Length = 304
Score = 34.5 bits (80), Expect = 0.044
Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 35/187 (18%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNH----A 80
L +F K + F GS K+R A Y L + +I +S GN A
Sbjct: 15 RLFPDAPFRLFAKLEGFNPGGSIKDRPALYILEAAIKRGRITPGTTIIESSSGNLGIALA 74
Query: 81 QAMCYHGSRLNIPVTVVMPIVAP----IMKIQACRRYGATV-IVEGADMKEAKNIALKKG 135
Y G R + VV P ++P ++ R YGA V V D + G
Sbjct: 75 MICAYKGLRF---ICVVDPNISPQNLKLL-----RAYGAEVEKVTEPD---------ETG 117
Query: 136 AELG--LTYINGYLSS---GLSVLGYDHPD-IMAGQGTVGLEIVDQVANIDAIVVPVGGG 189
LG + + L+S Y +PD A G EI +D + V V
Sbjct: 118 GYLGTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGREIARAFPPLDYLFVGVSTT 177
Query: 190 GLIAGVA 196
G + G +
Sbjct: 178 GTLMGCS 184
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes,
D-cysteine desulfhydrase family. This model represents
a family of pyridoxal phosphate-dependent enzymes
closely related to (and often designated as putative
examples of) 1-aminocyclopropane-1-carboxylate
deaminase. It appears that members of this family
include both D-cysteine desulfhydrase (EC 4.4.1.15) and
1-aminocyclopropane-1-carboxylate deaminase (EC
3.5.99.7).
Length = 318
Score = 33.2 bits (76), Expect = 0.13
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 21/93 (22%)
Query: 166 GTVG-----LEIVDQ---VANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQG 217
G +G LEI Q D+IVV G GG IAG++ +GL +
Sbjct: 156 GALGYVEAALEIAQQLESEVKFDSIVVASGSGGTIAGLS------------LGLSHLMPD 203
Query: 218 VESDRCASFSTAIKHGKPTPVSVQPTLADGLAV 250
VE V++ +A+GL +
Sbjct: 204 VELVGVTVSRFVADQ-TDKFVNLVQAIAEGLEL 235
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 32.4 bits (74), Expect = 0.20
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 121 GADMKEAK---NIALKKGAELGLTY------INGYLSSGLSVLGYDHPDIMAGQGTV--- 168
G M EA+ N+A GA GL Y IN Y SSGL + Y IM G
Sbjct: 55 GCAMPEAEQGLNMARNIGALAGLPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIA 114
Query: 169 -GLEIVDQVANIDAIVVP 185
G E + V + +V P
Sbjct: 115 GGAESMSLVPMMGHVVRP 132
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit. Tryptophan
synthase catalyzes the last step in the biosynthesis of
tryptophan. the beta chain contains the functional
domain for or the synthesis of tryptophan from indole
and serine. The enzyme requires pyridoxal-phosphate as a
cofactor. The pyridoxal-P attachment site is contained
within the conserved region
[LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P
attachment site] which is present between residues
90-100 of the model [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 385
Score = 32.0 bits (73), Expect = 0.27
Identities = 60/253 (23%), Positives = 100/253 (39%), Gaps = 40/253 (15%)
Query: 32 LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLN 91
L +I+LK++ TG+ K A L+ KK+ + G H A + L
Sbjct: 63 LGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLG 122
Query: 92 IPVTVVMPIVAPIMKIQA-----CRRYGATVI---VEGADMKEAKNIALKKGAELGLTYI 143
+ V M A ++ Q GA VI +K+A N AL+ +
Sbjct: 123 LDCEVYMG--AEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVT---SVD 177
Query: 144 NGYLSSGLSVLG-YDHPDI-MAGQGTVGLEIVDQVANI-----DAIVVPVGGGGLIAGVA 196
+ + G S +G + P + Q +G E +Q+ DA++ VGGG G+
Sbjct: 178 DTHYVLG-SAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIF 236
Query: 197 Y---DHPDIMAGQGTVGLEIVDQGVESDR-CASF---STAIKHGKPTPV------SVQPT 243
Y D P + +G+E G+++D+ A+ S + HG T + +
Sbjct: 237 YAFIDDPSVQ----LIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEA 292
Query: 244 --LADGLAVPLVG 254
++ GL P VG
Sbjct: 293 HSVSAGLDYPGVG 305
>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase.
Length = 423
Score = 32.3 bits (73), Expect = 0.28
Identities = 61/208 (29%), Positives = 83/208 (39%), Gaps = 41/208 (19%)
Query: 29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK--KKGVIS-ASLGNHAQAMCY 85
LSE T EI K +F GS K+R A + E + GV++ S G+ A ++
Sbjct: 62 LSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLAT 121
Query: 86 HGSRLNIPVTVVMPIVAPIMKIQACRRYGATV-------------IVEGADMK--EAKNI 130
VV+P I K Q GATV V A + EA +
Sbjct: 122 VAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANEL 181
Query: 131 A--LKKGAEL---GLTYINGYLSSGL--------SVLG---YDHPDIMAG-----QGTVG 169
A +KG+E L NG +S S G D + +A +GT G
Sbjct: 182 ASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGT-G 240
Query: 170 LEIVDQVA-NIDAIVVPVGGGGLIAGVA 196
EI +Q N+DA V G GG +AGV+
Sbjct: 241 PEIWEQTQGNLDAFVAAAGTGGTLAGVS 268
>gnl|CDD|214491 smart00052, EAL, Putative diguanylate phosphodiesterase. Putative
diguanylate phosphodiesterase, present in a variety of
bacteria.
Length = 242
Score = 29.9 bits (68), Expect = 1.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 100 IVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
IV I I+ ++ G V+ EG + E ++ L+ LG Y GYL
Sbjct: 192 IVQSI--IELAQKLGLQVVAEGVETPEQLDL-LRS---LGCDYGQGYL 233
>gnl|CDD|183235 PRK11618, PRK11618, inner membrane ABC transporter permease protein
YjfF; Provisional.
Length = 317
Score = 29.2 bits (66), Expect = 2.0
Identities = 48/187 (25%), Positives = 70/187 (37%), Gaps = 47/187 (25%)
Query: 38 FLKKDFFQVT--GSFKERGACYALLMLSEDQKK-KGVISASLGNHAQAMCYHGSRLNIPV 94
+LK F VT G F RG + ++SE+ +L + A + G RL+
Sbjct: 111 YLKLPAFIVTLAGMFLARGVSF---LVSEESIPINHPFYDTLSSLAWKLPGGG-RLSAMA 166
Query: 95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY-LSSGLSV 153
+++ +VA + + R+G V G + A G + T I Y LS L+
Sbjct: 167 LIMLAVVAIGIFLAHRTRFGNNVYAIGGN----ATSANLMGIPVRRTTIRIYMLSGFLAT 222
Query: 154 L-----------GYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDI 202
L GY VG+E +DAI V GG L+ G
Sbjct: 223 LAGIVFSLYTSAGY-------ALAAVGVE-------LDAIAAVVIGGTLLTG-------- 260
Query: 203 MAGQGTV 209
G GTV
Sbjct: 261 --GVGTV 265
>gnl|CDD|236065 PRK07591, PRK07591, threonine synthase; Validated.
Length = 421
Score = 29.2 bits (66), Expect = 2.3
Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 43/238 (18%)
Query: 31 ELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG---VISASLGNHAQAMCYHG 87
EL +++K D T SFK+R AL ++ G V AS GN A ++ H
Sbjct: 101 ELGLKNLYIKDDSVNPTHSFKDRVVSVAL----TAARELGFTTVACASTGNLANSVAAHA 156
Query: 88 SRLNIPVTVVMPIVAPIMKIQACRRYGATVI-VEGA--DMKE-AKNIALKKGAELGLTYI 143
+R + V +P KI YG T++ V+G D+ +A G ++
Sbjct: 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCSELA---NEHEGWGFV 213
Query: 144 N----GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDH 199
N Y + G LGY+ +A Q +G + DQ +V P+ G L+ +
Sbjct: 214 NINLRPYYAEGSKTLGYE----VAEQ--LGWRLPDQ------VVAPLASGSLLTKIDKGF 261
Query: 200 PDIMAGQGTVGLEIVDQ------GVESDRCASFSTAIKHGKPTPVSVQP-TLADGLAV 250
++ VGL V+ G +++ C+ + A K G+ V+P T+A LA+
Sbjct: 262 QEL----IKVGL--VEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI 313
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino
acid transport and metabolism].
Length = 323
Score = 29.2 bits (66), Expect = 2.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 170 LEIVDQVA---NIDAIVVPVGGGGLIAGVA 196
LEI +Q D++VV G GG AG+
Sbjct: 169 LEIAEQAEQLLKFDSVVVAPGSGGTHAGLL 198
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 28.7 bits (65), Expect = 3.3
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 32/191 (16%)
Query: 29 LSE-LTKMEIFLKKDFFQVTGSFKERGAC----YALLMLSEDQKKKGVISAS-LGNHAQA 82
LSE L +I+LK++ TG+ K A A M KK VI+ + G H A
Sbjct: 43 LSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRM-----GKKRVIAETGAGQHGVA 97
Query: 83 MCYHGSRLNIPVTVVMPIVAPIMKIQACRR-----YGATVIVEGAD---MKEAKNIALKK 134
+ + + M A ++ Q GA V+ + +K+A + A++
Sbjct: 98 TATACALFGLECEIYM--GAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRD 155
Query: 135 GAELGLTYINGYLSSGLSVLG-YDHPDI-MAGQGTVGLEIVDQVANI-----DAIVVPVG 187
+ + G SV+G + +P++ Q +G E Q+ D ++ VG
Sbjct: 156 WVT---NVEDTHYLLG-SVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVG 211
Query: 188 GGGLIAGVAYD 198
GG AG+ Y
Sbjct: 212 GGSNAAGLFYP 222
>gnl|CDD|215995 pfam00563, EAL, EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues. The EAL domain is a good candidate
for a diguanylate phosphodiesterase function. The domain
contains many conserved acidic residues that could
participate in metal binding and might form the
phosphodiesterase active site.
Length = 231
Score = 28.5 bits (64), Expect = 3.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 107 IQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
I R G V+ EG + +E + ELG+ Y+ GYL
Sbjct: 191 IALARSLGIKVVAEGVETEEQLELLK----ELGIDYVQGYL 227
>gnl|CDD|107208 cd06447, D-Ser-dehyd, D-Serine dehydratase is a pyridoxal phosphate
(PLP)-dependent enzyme which catalyzes the conversion of
L- or D-serine to pyruvate and ammonia. D-serine
dehydratase serves as a detoxifying enzyme in most E.
coli strains where D-serine is a competitive antagonist
of beta-alanine in the biosynthetic pathway to
pentothenate and coenzyme A. D-serine dehydratase is
different from other pyridoxal-5'-phosphate-dependent
enzymes in that it catalyzes alpha, beta-elimination
reactions on amino acids.
Length = 404
Score = 28.5 bits (64), Expect = 4.0
Identities = 59/256 (23%), Positives = 84/256 (32%), Gaps = 56/256 (21%)
Query: 36 EIFLKKD-FFQVTGSFKERGACYALL--------------------MLSEDQKKK----- 69
+ LK D ++GS K RG Y +L L+ ++ +K
Sbjct: 76 RLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQY 135
Query: 70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKN 129
+ S GN ++ + L VTV M A K R G TV+ D +A
Sbjct: 136 SIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETDYSKAVE 195
Query: 130 IALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIV------ 183
K+ A + Y +S LGY + Q+A + V
Sbjct: 196 EGRKQAAADPMCYFVDDENSRDLFLGY---------AVAASRLKAQLAELGIKVDAEHPL 246
Query: 184 ---VPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSV 240
+P G GG GVA+ I G + E + G +SV
Sbjct: 247 FVYLPCGVGGAPGGVAFGLKLIF------GDNVHCFFAEPTHSPCMLLGMATGLHDKISV 300
Query: 241 QP------TLADGLAV 250
Q T ADGLAV
Sbjct: 301 QDIGIDNRTAADGLAV 316
>gnl|CDD|211710 TIGR02035, D_Ser_am_lyase, D-serine ammonia-lyase. This family
consists of D-serine ammonia-lyase (EC 4.3.1.18), a
pyridoxal-phosphate enzyme that converts D-serine to
pyruvate and NH3. This enzyme is also called D-serine
dehydratase and D-serine deaminase and was previously
designated EC 4.2.1.14. It is homologous to an enzyme
that acts on threonine and may itself act weakly on
threonine [Energy metabolism, Amino acids and amines].
Length = 431
Score = 28.3 bits (63), Expect = 4.2
Identities = 44/191 (23%), Positives = 67/191 (35%), Gaps = 32/191 (16%)
Query: 36 EIFLKKD-FFQVTGSFKERGACYALLMLSE-------------------DQKKKGVIS-- 73
+ LKKD ++GS K RG Y +L +E + + K S
Sbjct: 94 RLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSILAEPEFKQFFSRY 153
Query: 74 ----ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKN 129
S GN ++ + L VTV M A K R +G TV+ +D A
Sbjct: 154 SIAVGSTGNLGLSIGIISAALGFQVTVHMSADARQWKKDKLRSHGVTVVEYESDYGVAVE 213
Query: 130 IALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDA---IVVPV 186
K Y +S LGY + A + + + + + + +P
Sbjct: 214 EGRKAAQSDPNCYFIDDENSRTLFLGY---AVAASRLKAQFDQQGIIVDAEHPLFVYLPC 270
Query: 187 GGGGLIAGVAY 197
G GG GVA+
Sbjct: 271 GVGGGPGGVAF 281
>gnl|CDD|225110 COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain)
[Signal transduction mechanisms].
Length = 256
Score = 28.0 bits (63), Expect = 5.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 100 IVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
IV I + + G TV+ EG + +E ++ ELG Y+ GYL
Sbjct: 194 IVRAI--VALAHKLGLTVVAEGVETEEQLDLL----RELGCDYLQGYL 235
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed.
Length = 427
Score = 28.2 bits (64), Expect = 5.3
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 41/173 (23%)
Query: 82 AMCYHGSRLNIPVTVVMPIVA----P----IMKIQACRRYGATVIVEGADMKE------A 127
A+ + + TV M V+ P +M+ YGA VI +D+ E A
Sbjct: 141 ALALACALFGLECTVFMVRVSYEQKPYRRSLMET-----YGAEVIPSPSDLTEAGRKILA 195
Query: 128 KN--------IALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI 179
++ IA+ + E + + G SVL +H ++ Q +GLE Q+
Sbjct: 196 EDPDHPGSLGIAISEAVEDAAKRPDTKYALG-SVL--NH--VLLHQTVIGLEAKKQLELA 250
Query: 180 ----DAIVVPVGGGGLIAGVAYD-HPDIMAGQGTVGLEIVDQGVESDRCASFS 227
D ++ VGGG AG+A+ D + G + VE C + +
Sbjct: 251 GEYPDVVIGCVGGGSNFAGLAFPFLGDKLE--GKKDTRFI--AVEPAACPTLT 299
>gnl|CDD|176527 cd08585, GDPD_like_3, Glycerophosphodiester phosphodiesterase
domain of uncharacterized bacterial
glycerophosphodiester phosphodiesterases. This
subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in a group of
uncharacterized bacterial glycerophosphodiester
phosphodiesterase and similar proteins. They show high
sequence similarity with Escherichia coli
glycerophosphodiester phosphodiesterase, which catalyzes
the degradation of glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols.
Length = 237
Score = 27.7 bits (62), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 210 GLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAV 250
GL D G+ + ++F A + G + VQ T ADG V
Sbjct: 11 GLHDRDAGIPENSLSAFRAAAEAGYGIELDVQLT-ADGEVV 50
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 28.2 bits (63), Expect = 5.5
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 120 EGAD-MKEAKNIALKKGAEL---GLTYINGYLSSGLSVLGYDHPDIMAGQGTV----GLE 171
EGA A+ IAL+ G + G+T +N + SSGL + ++AG+G V G+E
Sbjct: 60 EGATGANIARQIALRAGLPVTVPGMT-VNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVE 118
Query: 172 IVDQVAN 178
+ V N
Sbjct: 119 SISCVQN 125
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD):
Pyridoxal phosphate (PLP)-dependent enzyme which
catalyzes the conversion of
1-aminocyclopropane-L-carboxylate (ACC), a precursor of
the plant hormone ethylene, to alpha-ketobutyrate and
ammonia.
Length = 307
Score = 27.8 bits (62), Expect = 6.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 155 GYDHPDIMAGQGTVG--LEIVDQVA----NIDAIVVPVGGGGLIAGVA 196
G +HP + G G VG LEI Q D+IVV G AG++
Sbjct: 147 GSEHP--LGGLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLS 192
>gnl|CDD|216629 pfam01653, DNA_ligase_aden, NAD-dependent DNA ligase adenylation
domain. DNA ligases catalyze the crucial step of
joining the breaks in duplex DNA during DNA replication,
repair and recombination, utilising either ATP or NAD(+)
as a cofactor. This domain is the catalytic adenylation
domain. The NAD+ group is covalently attached to this
domain at the lysine in the KXDG motif of this domain.
This enzyme- adenylate intermediate is an important
feature of the proposed catalytic mechanism.
Length = 314
Score = 27.7 bits (62), Expect = 6.2
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 10/48 (20%)
Query: 135 GAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAI 182
G + LTY +G L + G GT G ++ V I AI
Sbjct: 116 GVAVSLTYEDGVLVRAAT----------RGDGTTGEDVTQNVKTIRAI 153
>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven [Amino acid biosynthesis,
Serine family].
Length = 454
Score = 27.5 bits (61), Expect = 9.1
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 23/175 (13%)
Query: 34 KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK----KKG--VISASLGNHAQAMCYHG 87
K E+ K +FF GS K+R AL M+ + + K G +I + GN +
Sbjct: 25 KCELLAKCEFFNPGGSVKDR---IALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVA 81
Query: 88 SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA----DMKEAK-NIALKKGAELGLTY 142
+ +V+P K+ + GA ++ D E+ +A + E+ +
Sbjct: 82 AIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAH 141
Query: 143 INGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVA 196
I ++ + L + G EI++Q +D V G GG I G+A
Sbjct: 142 ILDQYNNPSNPLAHYD--------GTGPEILEQCEGKLDMFVAGAGTGGTITGIA 188
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.403
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,771,783
Number of extensions: 1345321
Number of successful extensions: 1468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1332
Number of HSP's successfully gapped: 103
Length of query: 269
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 174
Effective length of database: 6,723,972
Effective search space: 1169971128
Effective search space used: 1169971128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)