RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5622
(269 letters)
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 123 bits (308), Expect = 7e-34
Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 17/242 (7%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
LS I +K++ Q SFK RGA + L+E+QK GVI+AS GNHAQ + +
Sbjct: 35 KLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSS 94
Query: 88 SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
+RL + +VMP +K+ A R +G V++ GA+ EAK A++ + G T++
Sbjct: 95 ARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVP--- 151
Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
+DHP ++AGQGT+ LE++ Q A++D + VPVGGGGL AGVA +M
Sbjct: 152 -------PFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMP--- 201
Query: 208 TVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDK 267
+I VE++ A A+ G P + A+G+AV +G F +D
Sbjct: 202 ----QIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDD 257
Query: 268 MF 269
+
Sbjct: 258 II 259
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 106 bits (264), Expect = 2e-27
Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 17/243 (6%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
S +++ E+F K + FQ G+FK RGA AL L+E Q+K GV++ S GNHAQA+
Sbjct: 28 STVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALS 87
Query: 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
L IP ++MP+ AP K+ A + YG VI+ + + +A + GLT I
Sbjct: 88 AKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIP-- 145
Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQ 206
YDHP ++AGQGT E+ ++V +DA+ V +GGGGL++G A
Sbjct: 146 --------PYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGSALAARHFAP-- 195
Query: 207 GTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLID 266
GVE + + + G + T+ADG +G F +D
Sbjct: 196 -----NCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVD 250
Query: 267 KMF 269
+
Sbjct: 251 DIL 253
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 89.4 bits (221), Expect = 1e-21
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 28/225 (12%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSED-QKKKGVISASLGNHAQAMCYHGSRLNIPV 94
IFLK + GS K+R A + +L + K G++ + GN A+ G++ V
Sbjct: 22 RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRV 81
Query: 95 TVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSGLS 152
+ MP + + + + GA +++ + MK A AL+ E G +N +
Sbjct: 82 ILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQF------ 135
Query: 153 VLGYDHPDIMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGL 211
+ ++ + Q T G EI+ Q+ IDA V VG GG I+GV +
Sbjct: 136 ---ENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIV- 191
Query: 212 EIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256
VE + S G+P ++Q G+ V
Sbjct: 192 -----AVEPAKSPVLS----GGQPGKHAIQ-----GIGAGFVPKI 222
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 87.3 bits (215), Expect = 8e-21
Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 17/176 (9%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED-----QKKKGVISASLGNHAQ 81
+ + E E+++K + GS K+R A Y + E + ++ + GN
Sbjct: 16 AKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGI 75
Query: 82 AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRY--GATVIVEGADMKEAKNIALKKGAELG 139
+ + + + MP + + + + + M A+ AL+ ELG
Sbjct: 76 GLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEELG 135
Query: 140 LTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAG 194
+ + + ++ A T G E+ + + IDA V G GG I G
Sbjct: 136 AFMPDQF---------KNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITG 182
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 88.0 bits (217), Expect = 9e-21
Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 9/177 (5%)
Query: 27 SHLSELT--KMEIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQ 81
+ + + K E+ K +FF GS K+R + + D + +I + GN
Sbjct: 51 NKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGI 110
Query: 82 AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLT 141
+ + +VMP K+ R GA ++ + + + A
Sbjct: 111 GLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKN 170
Query: 142 YINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAY 197
I + + +A T EI+ Q +D +V VG GG I G+A
Sbjct: 171 EIPNSHI---LDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIAR 224
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 79.9 bits (196), Expect = 5e-18
Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 28/223 (12%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED----QKKKGVISASLGNHAQA 82
++++E + K + + S K+R + + + +I + GN
Sbjct: 20 NNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVG 79
Query: 83 MCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV---EGADMKEAKNIALKKGAELG 139
+ + + + + MP + +G +++
Sbjct: 80 LAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPN 139
Query: 140 LTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYD 198
+ + + + T G EI ID V +G GG I G
Sbjct: 140 GYMLQQF---------ENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKY 190
Query: 199 HPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQ 241
+ A G+E V+ S + GKP P +Q
Sbjct: 191 LKEQNANVKLYGVEPVE-----------SAILSGGKPGPHKIQ 222
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 78.9 bits (193), Expect = 1e-17
Identities = 65/243 (26%), Positives = 96/243 (39%), Gaps = 17/243 (6%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
L L + LK + Q TGSFK RGA + KG+++ S GNHAQ + Y
Sbjct: 27 LLDGLLGKRLLLKAEHLQKTGSFKARGALS---KALALENPKGLLAVSSGNHAQGVAYAA 83
Query: 88 SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
L + VVMP A K R YGA V+ G K + +A E G I+
Sbjct: 84 QVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEETGYALIH--- 140
Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
+D P ++AGQGT GLE++ Q + V G+ +
Sbjct: 141 -------PFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALS 193
Query: 208 TVGLEIVDQGVESDRCASFSTAIKHGKPTPVS-VQPTLADGLAVPLVGWNAFETAAPLID 266
L + GVE + +++ G+ + T ADG+ +G F +D
Sbjct: 194 PTTLVL---GVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFPILRERVD 250
Query: 267 KMF 269
+
Sbjct: 251 GIL 253
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 73.0 bits (178), Expect = 1e-15
Identities = 37/233 (15%), Positives = 69/233 (29%), Gaps = 17/233 (7%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK-KKGVISASLGNHAQAMC-- 84
L+ + I K + + S K R + + K GV N +
Sbjct: 18 RLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTNGNTGIALA 77
Query: 85 YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
Y + +T+ MP I + + + GA +++ I +
Sbjct: 78 YVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKY 137
Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVAYDHPDIM 203
L + + + T G EI + +D + VG GG + GV
Sbjct: 138 LLLQQ-----FSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTK 192
Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256
+++ VE + A+ + P P G+ + N
Sbjct: 193 GKT-----DLITVAVEPTDSPVIAQALAGEEIKPG---PHKIQGIGAGFIPGN 237
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 71.7 bits (174), Expect = 4e-15
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
LS++ ++LK D Q +GSFK RG + ++ Q + +S GN A Y
Sbjct: 14 MALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAK-QGCAHFVCSSAGNAGMAAAYA 72
Query: 87 GSRLNIPVTVVMPIVAPIMKIQACRRYGA 115
+L +P T+V+P P + I+ + GA
Sbjct: 73 ARQLGVPATIVVPGTTPALTIERLKNEGA 101
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 71.7 bits (175), Expect = 5e-15
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 2/108 (1%)
Query: 26 KSHLSELTKMEIFLKKDFFQVTG-SFKERGACYALLMLSEDQKKKG-VISASLGNHAQAM 83
+S L + ++LK +++ S K+R A + LS +K V A+ N A+
Sbjct: 100 RSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVAL 159
Query: 84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIA 131
V +P A R GA VIV+ +
Sbjct: 160 SAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLP 207
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 71.0 bits (173), Expect = 9e-15
Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 10/216 (4%)
Query: 28 HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
+++ T+ ++LK++ G+ K L+ K + + G H A
Sbjct: 63 NITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALAS 122
Query: 88 SRLNIPVTVVMPIVAPIMK---IQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
+ L + + M + + R GA VI + K+ + + +Y
Sbjct: 123 ALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYET 182
Query: 145 GYLSSGLSVLGYDHPDIMA-GQGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYD 198
+ G + + +P I+ Q +G E Q+ DA++ VGGG G+ D
Sbjct: 183 AHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFAD 242
Query: 199 HPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK 234
G +G+E G+E+ + + G
Sbjct: 243 F-INDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGI 277
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 66.9 bits (162), Expect = 1e-13
Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 11/190 (5%)
Query: 27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG---VISASLGNHAQAM 83
+ E++LK + GS K+R A ++ + + K +I A+ GN A+
Sbjct: 16 QRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIAL 75
Query: 84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
+ + ++MP + A R YGA +I+ + L +
Sbjct: 76 AMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLAL-------EM 128
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHPDI 202
L + + A T G EI Q I V +G G I GV+ +
Sbjct: 129 ANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQ 188
Query: 203 MAGQGTVGLE 212
VGL+
Sbjct: 189 SKPVTIVGLQ 198
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 67.4 bits (163), Expect = 1e-13
Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 11/215 (5%)
Query: 25 KKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMC 84
K + + ++ K + TGSFK+RG A+ + + V AS GN A +
Sbjct: 35 KGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKA-VEGGAQAVACASTGNTAASAA 93
Query: 85 YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
+ +R I VV+P + A IV+ + +K E +
Sbjct: 94 AYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDALRLTQKLTEAFPVALV 153
Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMA 204
+P + GQ T+ E+VD++ + G +
Sbjct: 154 ----------NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYH 203
Query: 205 GQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVS 239
G G ++ A +P ++
Sbjct: 204 ALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLA 238
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 67.3 bits (163), Expect = 2e-13
Identities = 40/235 (17%), Positives = 71/235 (30%), Gaps = 15/235 (6%)
Query: 32 LTKMEIFLKKDFFQVTGSFKERGACYALLMLSE----DQKKKGVISASLGNHAQAMCYHG 87
L ++++K TGSFK+ G + ++ + GV AS G+ + A+ +
Sbjct: 135 LGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYC 194
Query: 88 SRLNIPVTVVMPI-VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
+ IP V +P + ++ GA V+ D + + AEL + N
Sbjct: 195 ASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSL 254
Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQ 206
+ L+ D IV G + A G
Sbjct: 255 --------NSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGL 306
Query: 207 GTV--GLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
+ + + + K KP S A + P+ A
Sbjct: 307 VDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVY 361
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 63.8 bits (154), Expect = 2e-12
Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 11/167 (6%)
Query: 36 EIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQAMCYHGSRLNI 92
+ +K + + S K R + +D K K ++ A+ GN A+ Y +
Sbjct: 26 NVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGY 85
Query: 93 PVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLS 152
+T+ MP + + + G +++ IA + L
Sbjct: 86 KITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQ--- 142
Query: 153 VLGYDHPD-IMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVAY 197
+++P + T G EI +D +V VG GG I G++
Sbjct: 143 ---FENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISR 186
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 63.9 bits (154), Expect = 2e-12
Identities = 26/213 (12%), Positives = 60/213 (28%), Gaps = 16/213 (7%)
Query: 28 HLSELT--KMEIFLKKDFFQVTGSF---KERGACYALLM-LSEDQKKKGVISASLGNHAQ 81
LS+ K+ ++ K++ +F K R Y + L++ I N +
Sbjct: 23 RLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTR 82
Query: 82 AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV----------EGADMKEAKNIA 131
+ + L + +V R + +G D+ ++
Sbjct: 83 QVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWE 142
Query: 132 LKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGL 191
+ + +G S + V + + D +VV G
Sbjct: 143 DALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGST 202
Query: 192 IAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA 224
AG+ +G++ + ++
Sbjct: 203 QAGMVVGFAADGRADRVIGVDASAKPAQTREQI 235
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 63.7 bits (154), Expect = 3e-12
Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 9/178 (5%)
Query: 31 ELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRL 90
++ +I+LK++ G+ K A L+ K + + G H A G+ L
Sbjct: 62 KIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALL 121
Query: 91 NIPVTVVMPIV---APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
+ V + M M + + GA VI + + K+ + + T+ +
Sbjct: 122 GMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHY 181
Query: 148 SSGLSVLGYDHPD-IMAGQGTVGLEIVDQVANI-----DAIVVPVGGGGLIAGVAYDH 199
G V + +P + Q +G E Q+ D IV VGGG G+ Y
Sbjct: 182 LIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPF 239
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 62.8 bits (151), Expect = 6e-12
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 19/187 (10%)
Query: 28 HLSELT--KMEIFLKKDFFQVTGSF---KERGACYALL-MLSEDQKKKGVISASLGNHAQ 81
LS+ K+ ++ K++ +F K R Y + ++ D I N +
Sbjct: 23 RLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTR 82
Query: 82 AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV-------------EGADMKEAK 128
+ ++L ++ PI + + I +G D+ K
Sbjct: 83 MVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRK 142
Query: 129 NIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGG 188
+ A + + +G S Y + V + V+ D IVV
Sbjct: 143 SFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVT 202
Query: 189 GGLIAGV 195
G AG+
Sbjct: 203 GSTTAGI 209
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 57.0 bits (136), Expect = 4e-10
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 28 HLSELTKMEIFLKKDFFQV--TGSFKERGACYALL-MLSEDQKKKGVISASLGNHAQAMC 84
++S ++++K+D G K R Y L LS+ + A NHA
Sbjct: 29 NISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTG 88
Query: 85 YHGSRLNIPVTVVMPIVAPIMKIQACRRY 113
+L + +V+ + +
Sbjct: 89 LAAKKLGLDAILVLRGKEELKGNYLLDKI 117
>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 261
Score = 31.1 bits (69), Expect = 0.11
Identities = 16/145 (11%), Positives = 34/145 (23%), Gaps = 7/145 (4%)
Query: 6 SVHCGQDLGFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYAL-LMLSE 64
++ + K +EI + + + ++
Sbjct: 91 NLLMLDHGESFLELLKEYEAKGIELHRFVLEITEHNFEGDIEQLYHMLAYYRTYGIKIAV 150
Query: 65 DQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMK--IQACRRYGATVIVEGA 122
D K + + V+ P ++ R+ GA ++ E
Sbjct: 151 DNIGKESSNLDRIALLSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKIGAALLYEDI 210
Query: 123 DMKEAKNIALKKGAELGLTYINGYL 147
+ A G Y GY
Sbjct: 211 EANFQLQYAW----RNGGRYFQGYY 231
>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Thale cress (Arabidopsis thaliana), OPR3
[TaxId: 3702]}
Length = 380
Score = 26.4 bits (57), Expect = 4.2
Identities = 11/77 (14%), Positives = 19/77 (24%), Gaps = 4/77 (5%)
Query: 187 GGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLAD 246
GG LI+ P G+ +Q + H K + Q
Sbjct: 49 PGGFLISEGTMVSPGSAGFPHVPGIYSDEQVEAWKQVVEAV----HAKGGFIFCQLWHVG 104
Query: 247 GLAVPLVGWNAFETAAP 263
+ + N +
Sbjct: 105 RASHAVYQPNGGSPISS 121
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.1 bits (57), Expect = 4.2
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 62 LSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121
LS Q+++ I +L N+ + + + I ++ G T+I
Sbjct: 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVT 188
Query: 122 ADMKEAKNIA 131
D EA +A
Sbjct: 189 HDQVEAMTLA 198
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 26.0 bits (57), Expect = 4.2
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 62 LSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG 121
LS +++ I +L + + + L + + + IQ + G T+++
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL---VSEVFEVIQKINQEGTTILLVE 196
Query: 122 ADMKEAKNIA 131
+ A +A
Sbjct: 197 QNALGALKVA 206
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 25.4 bits (54), Expect = 8.4
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 134 KGAEL----GLTYINGYLSSGLSVLGYDHPDIMA 163
KG+ + G ++ +VLG+ HP+I++
Sbjct: 31 KGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVS 64
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 25.3 bits (54), Expect = 8.9
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 134 KGAEL----GLTYINGYLSSGLSVLGYDHPDIMA 163
+G EL G ++G S ++ GY+HP + A
Sbjct: 33 EGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNA 66
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 25.2 bits (54), Expect = 9.5
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 134 KGAEL----GLTYINGYLSSGLSVLGYDHPDIMA 163
+ + G Y++ + G+ HP ++A
Sbjct: 30 ENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVA 63
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 25.1 bits (54), Expect = 9.5
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 134 KGAEL----GLTYINGYLSSGLSVLGYDHPDIMA 163
+GA + G YI+ G++ LG+ +P+++
Sbjct: 27 QGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVE 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.403
Gapped
Lambda K H
0.267 0.0475 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 998,050
Number of extensions: 45887
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 30
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)