BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5623
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
Length = 71
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 51 YYKGGFEPKMTKREASLILGVSQSA-NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAK 109
+ KGGF+PKM +EA IL ++++ + K+KE H++I+ NHPD+GGSP+LA KINEAK
Sbjct: 2 FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAK 61
Query: 110 DLLEQ 114
D LE+
Sbjct: 62 DFLEK 66
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GSPYLAAKINEAKDLLE 113
K++ ILGVS++A +I++A+KR+ HPDR G AK E K+ E
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GSPYLAAKINEAKDLLE 113
K++ ILGVS++A +I++A+KR+ HPDR G AK E K+ E
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GSPYLAAKINEAKDLLE 113
K++ ILGVS++A +I++A+KR+ HPDR G AK E K+ E
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 59 KMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEA 108
+M K++ ILG SAN +K+ ++++I + HPD+ + A + E
Sbjct: 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEEC 55
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLE 113
ILGV +SA+ +IK+A ++ HPD+ SP AK E + E
Sbjct: 12 ILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYE 57
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEA 108
K++ ILG SAN +K+ ++++I L HPD+ + A + E
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEEC 61
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSP 99
+LGVS++A++ IK+A+K++ HPD+ P
Sbjct: 22 VLGVSRTASQADIKKAYKKLAREWHPDKNKDP 53
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDR 95
+LGV +A + +IK A+ R L HPDR
Sbjct: 22 LLGVPSTATQAQIKAAYYRQCFLYHPDR 49
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSP 99
ILGVS+ A+ +K+A++R+ HPD+ +P
Sbjct: 12 ILGVSRGASDEDLKKAYRRLALKFHPDKNHAP 43
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLA----AKINEAKDLLE 113
+LGVS++A+ +I++A K++ HPD+ + A KIN A ++L+
Sbjct: 26 LLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLK 75
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDR-GGSPYLAAKINEAKDLL 112
+LGVS SAN ++K+ +++ HPD+ G +I+EA ++L
Sbjct: 13 LLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEIL 58
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP 99
+++ +LGV A+R ++ +A++++ L HPD+ +P
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP 63
>pdb|1FAF|A Chain A, Nmr Structure Of The N-Terminal J Domain Of Murine
Polyomavirus T Antigens
Length = 79
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 79 KIKEAHKRIITLNHPDRGGSPYLAAKIN 106
++++A+K+ L HPD+GGS L ++N
Sbjct: 29 RMQQAYKQQSLLLHPDKGGSHALMQELN 56
>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
pdb|3L2J|B Chain B, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
Length = 535
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 12 LAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGV 71
++A YA R + A ++EALK A++ A ++ F+ MTK E +L
Sbjct: 334 MSAFWYAVRTAVINAASGRQTVDEALK---DAQTNAAAE-----FDDVMTKEEQIFLLHR 385
Query: 72 SQSANRMKIKEAHKRIITLNHPDRGGS 98
+Q+ ++KE +R ++ D+G +
Sbjct: 386 AQAQCEKRLKEVLQRPASIMESDKGWT 412
>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3C4M|B Chain B, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3H3G|A Chain A, Crystal Structure Of The Extracellular Domain Of The Human
Parathyroid Hormone Receptor (Pth1r) In Complex With
Parathyroid Hormone-Related Protein (Pthrp)
Length = 539
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 12 LAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGV 71
++A YA R + A ++EALK A++ A ++ F+ MTK E +L
Sbjct: 338 MSAFWYAVRTAVINAASGRQTVDEALK---DAQTNAAAE-----FDDVMTKEEQIFLLHR 389
Query: 72 SQSANRMKIKEAHKRIITLNHPDRGGS 98
+Q+ ++KE +R ++ D+G +
Sbjct: 390 AQAQCEKRLKEVLQRPASIMESDKGWT 416
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLE 113
I+GV + + IK A++R+ HPD P A+ E + E
Sbjct: 10 IMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWE 55
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAK---INEAKDLL 112
LG+++ A+ +IK A++R HPD+ P K I EA D+L
Sbjct: 8 TLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVL 55
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAK-----INEAKDLLEQSK 116
+LGV SA+ IK+A++++ HPD+ A+ ++EA ++L SK
Sbjct: 14 VLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSK 67
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDR 95
+LGVS++A+ +I++A K++ HPD+
Sbjct: 7 LLGVSKTASSREIRQAFKKLALKLHPDK 34
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPD 94
KR+ ILGV ++A + +I +A++++ HPD
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPD 94
KR+ ILGV ++A + +I +A++++ HPD
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPD 94
ILGV ++A++ +IK+A+ ++ HPD
Sbjct: 12 ILGVPRNASQKEIKKAYYQLAKKYHPD 38
>pdb|2NQP|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NQP|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NQP|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NQP|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NR0|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NR0|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NR0|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NR0|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NRE|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
Length = 270
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 2 ASTAILTGLGLAAVGYAGRYILKAAPM 28
A+TA GL L AV Y RY L PM
Sbjct: 237 AATAKAEGLYLVAVDYPDRYDLPKPPM 263
>pdb|1XX1|A Chain A, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|B Chain B, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|C Chain C, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|D Chain D, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|2F9R|A Chain A, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|B Chain B, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|C Chain C, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|D Chain D, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
Length = 285
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 26 APMAS-ARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVS 72
+P+ ARL EA+K+ A F N YY K++ +A+L +GV
Sbjct: 202 SPLGDMARLKEAIKSRDSANGFINKIYYWS--VDKVSTTKAALDVGVD 247
>pdb|1DJ0|A Chain A, The Crystal Structure Of E. Coli Pseudouridine Synthase I
At 1.5 Angstrom Resolution
pdb|1DJ0|B Chain B, The Crystal Structure Of E. Coli Pseudouridine Synthase I
At 1.5 Angstrom Resolution
Length = 264
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 2 ASTAILTGLGLAAVGYAGRYILKAAPM 28
A+TA GL L AV Y RY L PM
Sbjct: 231 AATAKAEGLYLVAVDYPDRYDLPKPPM 257
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDR 95
+LGV +A + ++K+A++++ HPD+
Sbjct: 11 VLGVKPNATQEELKKAYRKLALKYHPDK 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,918,655
Number of Sequences: 62578
Number of extensions: 94159
Number of successful extensions: 206
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 30
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)