Query psy5623
Match_columns 116
No_of_seqs 246 out of 1502
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 22:24:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0723|consensus 100.0 1.9E-30 4.2E-35 171.6 10.9 107 3-115 2-108 (112)
2 PTZ00100 DnaJ chaperone protei 99.9 2.9E-26 6.2E-31 155.1 10.9 111 1-114 1-116 (116)
3 PF03656 Pam16: Pam16; InterP 99.9 5.1E-27 1.1E-31 161.2 6.6 109 1-114 1-109 (127)
4 KOG3442|consensus 99.9 1.7E-22 3.8E-27 136.8 10.8 108 5-114 3-110 (132)
5 PHA03102 Small T antigen; Revi 99.6 3E-16 6.5E-21 111.0 6.7 55 61-115 3-59 (153)
6 COG0484 DnaJ DnaJ-class molecu 99.6 1.9E-16 4.2E-21 125.0 5.4 55 61-115 2-60 (371)
7 smart00271 DnaJ DnaJ molecular 99.6 1.8E-15 3.8E-20 90.4 6.2 52 64-115 2-58 (60)
8 cd06257 DnaJ DnaJ domain or J- 99.6 2.2E-15 4.9E-20 88.4 5.7 50 65-114 2-55 (55)
9 PTZ00037 DnaJ_C chaperone prot 99.6 2.2E-15 4.7E-20 121.3 7.1 60 56-115 21-80 (421)
10 KOG0713|consensus 99.5 5.7E-15 1.2E-19 114.8 5.3 53 63-115 16-72 (336)
11 PF00226 DnaJ: DnaJ domain; I 99.5 4.6E-14 9.9E-19 85.5 7.1 52 64-115 1-57 (64)
12 PRK14296 chaperone protein Dna 99.5 2.2E-14 4.8E-19 113.8 5.3 56 60-115 1-59 (372)
13 PRK09430 djlA Dna-J like membr 99.5 1.2E-13 2.6E-18 105.4 7.3 58 58-115 195-263 (267)
14 PRK14288 chaperone protein Dna 99.5 5.2E-14 1.1E-18 111.6 5.4 53 63-115 3-59 (369)
15 PRK14299 chaperone protein Dna 99.5 7.1E-14 1.5E-18 107.6 5.7 56 60-115 1-59 (291)
16 PRK14286 chaperone protein Dna 99.5 6.4E-14 1.4E-18 111.2 5.1 56 60-115 1-60 (372)
17 PRK14287 chaperone protein Dna 99.4 1.2E-13 2.6E-18 109.6 5.5 54 62-115 3-59 (371)
18 PRK14279 chaperone protein Dna 99.4 1.3E-13 2.8E-18 110.1 5.6 53 63-115 9-65 (392)
19 KOG0712|consensus 99.4 1.4E-13 3E-18 107.7 4.9 51 65-115 6-57 (337)
20 PRK14282 chaperone protein Dna 99.4 1.7E-13 3.6E-18 108.6 5.3 54 62-115 3-61 (369)
21 PRK14285 chaperone protein Dna 99.4 2E-13 4.2E-18 108.2 5.4 53 63-115 3-59 (365)
22 PRK10767 chaperone protein Dna 99.4 1.8E-13 4E-18 108.4 5.1 55 61-115 2-60 (371)
23 PRK14294 chaperone protein Dna 99.4 2.3E-13 4.9E-18 107.8 5.4 56 60-115 1-60 (366)
24 PRK14276 chaperone protein Dna 99.4 2E-13 4.4E-18 108.5 5.1 54 62-115 3-59 (380)
25 PRK14280 chaperone protein Dna 99.4 2.3E-13 5E-18 108.1 5.2 55 61-115 2-59 (376)
26 PRK14283 chaperone protein Dna 99.4 3.2E-13 6.9E-18 107.3 5.4 54 62-115 4-60 (378)
27 PRK14298 chaperone protein Dna 99.4 3.8E-13 8.3E-18 106.9 5.7 53 63-115 5-60 (377)
28 PHA02624 large T antigen; Prov 99.4 6.3E-13 1.4E-17 110.7 7.1 54 62-115 10-65 (647)
29 PRK14301 chaperone protein Dna 99.4 3.3E-13 7.1E-18 107.2 5.2 55 61-115 2-60 (373)
30 PRK14278 chaperone protein Dna 99.4 3E-13 6.5E-18 107.5 4.7 52 64-115 4-58 (378)
31 PRK10266 curved DNA-binding pr 99.4 5.1E-13 1.1E-17 103.5 5.5 56 60-115 1-59 (306)
32 PRK14295 chaperone protein Dna 99.4 6.2E-13 1.3E-17 106.1 5.9 53 63-115 9-65 (389)
33 PRK14297 chaperone protein Dna 99.4 5.2E-13 1.1E-17 106.1 5.3 53 63-115 4-60 (380)
34 KOG0721|consensus 99.4 6.8E-13 1.5E-17 98.1 5.5 54 63-116 99-156 (230)
35 PRK14277 chaperone protein Dna 99.4 5.2E-13 1.1E-17 106.4 5.0 53 63-115 5-61 (386)
36 PRK14281 chaperone protein Dna 99.4 8.5E-13 1.8E-17 105.5 6.0 53 63-115 3-59 (397)
37 PRK14291 chaperone protein Dna 99.3 1.5E-12 3.2E-17 103.7 6.0 52 64-115 4-58 (382)
38 PRK14300 chaperone protein Dna 99.3 1.6E-12 3.4E-17 103.2 5.9 53 63-115 3-58 (372)
39 KOG0717|consensus 99.3 2.4E-12 5.2E-17 103.7 6.4 55 61-115 6-65 (508)
40 KOG0716|consensus 99.3 2.9E-12 6.4E-17 97.3 6.5 56 60-115 28-87 (279)
41 TIGR02349 DnaJ_bact chaperone 99.3 2.8E-12 6.1E-17 101.0 5.9 51 65-115 2-55 (354)
42 PRK14284 chaperone protein Dna 99.3 2.9E-12 6.3E-17 102.3 5.6 52 64-115 2-57 (391)
43 PRK14289 chaperone protein Dna 99.3 2.9E-12 6.3E-17 102.0 5.4 54 62-115 4-61 (386)
44 PRK14290 chaperone protein Dna 99.3 3.2E-12 6.9E-17 101.2 5.5 52 64-115 4-60 (365)
45 PRK14292 chaperone protein Dna 99.3 4.2E-12 9.2E-17 100.6 6.2 52 64-115 3-57 (371)
46 KOG0715|consensus 99.3 7.7E-12 1.7E-16 96.5 5.5 58 58-115 38-98 (288)
47 KOG0718|consensus 99.3 1.3E-11 2.9E-16 99.7 6.7 55 61-115 7-68 (546)
48 PRK14293 chaperone protein Dna 99.2 9.6E-12 2.1E-16 98.8 5.7 52 64-115 4-58 (374)
49 KOG0691|consensus 99.2 3.6E-11 7.8E-16 93.0 6.2 53 63-115 5-61 (296)
50 COG2214 CbpA DnaJ-class molecu 99.2 6.5E-11 1.4E-15 84.5 6.3 54 62-115 5-63 (237)
51 PTZ00341 Ring-infected erythro 99.1 9E-11 1.9E-15 101.6 5.8 55 61-115 571-628 (1136)
52 TIGR03835 termin_org_DnaJ term 99.1 1.2E-10 2.7E-15 98.8 5.3 52 64-115 3-57 (871)
53 PRK01356 hscB co-chaperone Hsc 99.1 3.4E-10 7.3E-15 81.2 5.6 52 64-115 3-63 (166)
54 PRK05014 hscB co-chaperone Hsc 99.0 4.8E-10 1E-14 80.7 6.3 51 65-115 3-64 (171)
55 KOG0719|consensus 99.0 6.6E-10 1.4E-14 83.2 5.4 51 64-114 15-71 (264)
56 KOG0722|consensus 99.0 3.4E-10 7.3E-15 86.0 3.7 53 63-115 33-88 (329)
57 PRK03578 hscB co-chaperone Hsc 99.0 1.1E-09 2.3E-14 79.3 5.7 53 63-115 6-69 (176)
58 PRK00294 hscB co-chaperone Hsc 99.0 1.2E-09 2.5E-14 78.9 5.3 52 64-115 5-67 (173)
59 KOG1789|consensus 98.9 5.5E-09 1.2E-13 91.5 7.0 57 57-113 1275-1336(2235)
60 KOG0720|consensus 98.8 3E-09 6.5E-14 85.9 4.3 53 63-115 235-290 (490)
61 PRK01773 hscB co-chaperone Hsc 98.6 7.6E-08 1.7E-12 69.5 6.0 51 65-115 4-65 (173)
62 KOG1150|consensus 98.6 4E-08 8.6E-13 72.4 4.3 52 64-115 54-110 (250)
63 KOG0568|consensus 98.6 7.3E-08 1.6E-12 72.7 5.8 51 62-112 46-99 (342)
64 KOG0624|consensus 98.6 5.5E-08 1.2E-12 77.3 4.9 53 63-115 394-453 (504)
65 KOG0714|consensus 98.6 4.4E-08 9.4E-13 73.1 3.4 53 63-115 3-60 (306)
66 TIGR00714 hscB Fe-S protein as 98.5 2E-07 4.4E-12 66.2 5.1 41 75-115 3-52 (157)
67 KOG0550|consensus 98.5 1.4E-07 2.9E-12 76.0 4.5 53 63-115 373-430 (486)
68 COG5407 SEC63 Preprotein trans 98.5 1.2E-07 2.6E-12 77.1 3.7 52 64-115 99-159 (610)
69 COG5269 ZUO1 Ribosome-associat 97.7 7E-05 1.5E-09 57.9 5.2 53 63-115 43-104 (379)
70 COG1076 DjlA DnaJ-domain-conta 97.6 6.8E-05 1.5E-09 53.9 4.0 50 63-112 113-173 (174)
71 PF13446 RPT: A repeated domai 97.3 0.0018 3.9E-08 38.8 6.5 31 59-89 1-31 (62)
72 KOG0431|consensus 96.9 0.001 2.3E-08 54.5 3.9 37 74-110 399-442 (453)
73 PF11833 DUF3353: Protein of u 95.7 0.029 6.3E-07 41.2 5.4 38 72-113 1-38 (194)
74 KOG3192|consensus 95.2 0.058 1.3E-06 38.6 5.2 53 63-115 8-71 (168)
75 COG1076 DjlA DnaJ-domain-conta 91.8 0.16 3.5E-06 36.3 2.7 40 76-115 16-64 (174)
76 PF14687 DUF4460: Domain of un 87.8 0.76 1.7E-05 30.9 3.3 32 75-106 6-37 (112)
77 COG5552 Uncharacterized conser 78.6 12 0.00027 23.6 5.7 25 67-91 7-31 (88)
78 KOG3767|consensus 77.2 3 6.5E-05 33.0 3.3 42 56-97 41-88 (328)
79 PF03820 Mtc: Tricarboxylate c 75.1 3.9 8.6E-05 32.1 3.5 41 56-96 23-69 (308)
80 PF12669 P12: Virus attachment 59.0 11 0.00023 22.3 2.3 21 6-26 3-24 (58)
81 KOG0724|consensus 58.6 15 0.00032 28.6 3.7 40 75-114 4-51 (335)
82 PF04719 TAFII28: hTAFII28-lik 57.6 19 0.00041 23.3 3.5 25 63-87 63-90 (90)
83 KOG2070|consensus 53.4 6.6 0.00014 33.2 1.0 34 82-115 248-284 (661)
84 PF12728 HTH_17: Helix-turn-he 52.9 9.4 0.0002 21.1 1.4 15 60-74 2-16 (51)
85 KOG1573|consensus 51.5 30 0.00065 25.2 4.0 40 57-96 70-116 (204)
86 TIGR00824 EIIA-man PTS system, 49.4 37 0.00079 22.4 4.0 35 67-101 31-74 (116)
87 TIGR00798 mtc tricarboxylate c 48.4 29 0.00064 27.5 3.9 41 57-97 33-78 (318)
88 PRK09649 RNA polymerase sigma 47.4 24 0.00052 24.8 3.0 38 57-94 144-181 (185)
89 PF04967 HTH_10: HTH DNA bindi 46.5 29 0.00062 20.2 2.7 38 49-88 15-52 (53)
90 TIGR01764 excise DNA binding d 45.6 15 0.00032 19.5 1.4 15 60-74 2-16 (49)
91 PF07709 SRR: Seven Residue Re 44.5 21 0.00046 14.9 1.5 11 102-112 3-13 (14)
92 PF13056 DUF3918: Protein of u 44.0 25 0.00054 19.7 2.1 22 2-23 5-26 (43)
93 PRK13798 putative OHCU decarbo 41.4 29 0.00064 24.7 2.7 12 100-111 99-110 (166)
94 PF05344 DUF746: Domain of Unk 41.2 53 0.0011 20.0 3.4 37 57-94 11-47 (65)
95 PF10883 DUF2681: Protein of u 40.3 69 0.0015 20.6 4.0 27 1-27 1-27 (87)
96 PF13950 Epimerase_Csub: UDP-g 39.3 73 0.0016 18.8 3.8 33 61-94 28-60 (62)
97 PF13374 TPR_10: Tetratricopep 39.0 20 0.00043 18.1 1.2 18 77-94 25-42 (42)
98 PF04282 DUF438: Family of unk 38.3 22 0.00047 22.0 1.4 26 68-93 6-31 (71)
99 KOG3960|consensus 38.2 23 0.0005 27.4 1.8 16 100-115 128-143 (284)
100 PF01466 Skp1: Skp1 family, di 38.0 51 0.0011 20.2 3.1 23 59-81 45-67 (78)
101 PF07739 TipAS: TipAS antibiot 36.6 70 0.0015 20.4 3.8 38 69-109 50-88 (118)
102 PRK12547 RNA polymerase sigma 35.5 48 0.001 22.6 3.0 37 58-94 127-163 (164)
103 COG2879 Uncharacterized small 35.2 35 0.00075 20.8 1.9 15 83-97 27-41 (65)
104 smart00427 H2B Histone H2B. 35.1 52 0.0011 21.3 2.9 15 85-99 8-22 (89)
105 PRK12529 RNA polymerase sigma 35.0 52 0.0011 22.9 3.1 33 58-90 142-174 (178)
106 cd06170 LuxR_C_like C-terminal 34.2 48 0.0011 17.8 2.4 30 58-91 14-43 (57)
107 COG1072 CoaA Panthothenate kin 34.0 79 0.0017 24.7 4.2 38 55-92 20-57 (283)
108 PF04545 Sigma70_r4: Sigma-70, 33.9 38 0.00083 18.5 1.9 27 57-87 18-44 (50)
109 PF10041 DUF2277: Uncharacteri 33.4 1.3E+02 0.0028 19.0 5.7 26 67-92 7-32 (78)
110 PF10731 Anophelin: Thrombin i 32.9 29 0.00062 21.0 1.3 26 1-30 1-26 (65)
111 COG2846 Regulator of cell morp 32.9 1.4E+02 0.0031 22.4 5.1 42 50-98 28-69 (221)
112 KOG3219|consensus 32.3 78 0.0017 23.4 3.7 29 62-90 150-181 (195)
113 COG3755 Uncharacterized protei 32.3 68 0.0015 22.1 3.2 37 75-114 48-85 (127)
114 cd04762 HTH_MerR-trunc Helix-T 32.3 32 0.0007 17.9 1.4 15 60-74 1-15 (49)
115 smart00421 HTH_LUXR helix_turn 30.8 61 0.0013 17.2 2.4 29 58-90 17-45 (58)
116 PF08281 Sigma70_r4_2: Sigma-7 30.7 34 0.00073 18.9 1.3 19 57-75 24-42 (54)
117 cd04761 HTH_MerR-SF Helix-Turn 30.1 36 0.00078 18.2 1.4 30 60-95 1-30 (49)
118 PRK09636 RNA polymerase sigma 29.9 1.4E+02 0.0029 22.6 4.9 34 58-91 130-163 (293)
119 cd08048 TAF11 TATA Binding Pro 29.3 72 0.0016 20.3 2.8 15 73-87 70-84 (85)
120 TIGR03164 UHCUDC OHCU decarbox 28.8 81 0.0017 22.2 3.3 11 100-110 94-104 (157)
121 TIGR03180 UraD_2 OHCU decarbox 28.6 66 0.0014 22.7 2.8 11 100-110 94-104 (158)
122 PF15178 TOM_sub5: Mitochondri 28.4 51 0.0011 18.9 1.8 23 67-89 3-25 (51)
123 COG0089 RplW Ribosomal protein 27.4 44 0.00095 21.8 1.5 22 68-89 25-46 (94)
124 PF08447 PAS_3: PAS fold; Int 27.0 33 0.00072 20.3 0.9 27 64-94 7-34 (91)
125 PF00076 RRM_1: RNA recognitio 26.4 55 0.0012 18.2 1.8 22 69-90 4-25 (70)
126 PF14007 YtpI: YtpI-like prote 26.3 1.2E+02 0.0027 19.5 3.5 28 5-32 60-87 (89)
127 PHA02047 phage lambda Rz1-like 26.2 2E+02 0.0043 19.0 5.2 27 1-27 1-27 (101)
128 PF03206 NifW: Nitrogen fixati 25.2 2.1E+02 0.0046 18.9 6.8 54 61-114 13-76 (105)
129 PF11460 DUF3007: Protein of u 24.8 47 0.001 22.2 1.3 22 5-26 6-27 (104)
130 PF13384 HTH_23: Homeodomain-l 24.7 38 0.00083 18.4 0.8 27 59-86 17-43 (50)
131 PF11384 DUF3188: Protein of u 24.0 88 0.0019 17.9 2.2 18 3-20 26-43 (49)
132 PF02042 RWP-RK: RWP-RK domain 23.7 84 0.0018 18.2 2.1 25 60-88 16-40 (52)
133 PF08951 EntA_Immun: Enterocin 23.7 1.4E+02 0.003 17.4 3.2 24 91-114 15-38 (75)
134 COG1955 FlaJ Archaeal flagella 23.6 4.5E+02 0.0098 22.5 7.1 36 60-95 319-355 (527)
135 CHL00030 rpl23 ribosomal prote 23.4 70 0.0015 20.7 2.0 22 68-89 23-44 (93)
136 PRK09642 RNA polymerase sigma 23.1 1E+02 0.0022 20.7 2.9 33 57-89 120-152 (160)
137 PF08673 RsbU_N: Phosphoserine 23.0 1.7E+02 0.0036 18.2 3.6 24 72-95 32-55 (77)
138 PLN00158 histone H2B; Provisio 22.9 1.1E+02 0.0025 20.7 2.9 16 84-99 33-48 (116)
139 PRK12527 RNA polymerase sigma 22.8 1.1E+02 0.0024 20.5 3.0 29 59-87 121-149 (159)
140 PTZ00463 histone H2B; Provisio 22.5 1.2E+02 0.0026 20.7 3.0 16 84-99 34-49 (117)
141 CHL00168 pbsA heme oxygenase; 22.3 2.4E+02 0.0052 21.3 5.0 16 76-91 164-179 (238)
142 PF05801 DUF840: Lagovirus pro 22.3 1.3E+02 0.0028 19.8 3.0 30 8-39 5-34 (114)
143 COG0351 ThiD Hydroxymethylpyri 21.9 2.2E+02 0.0047 22.0 4.7 38 56-94 134-171 (263)
144 TIGR03636 L23_arch archaeal ri 21.8 82 0.0018 19.7 2.0 22 68-89 18-39 (77)
145 PHA01083 hypothetical protein 21.6 3E+02 0.0066 19.5 5.6 41 52-92 36-89 (149)
146 PF14893 PNMA: PNMA 21.5 80 0.0017 25.1 2.3 28 59-86 14-41 (331)
147 PF04512 Baculo_PEP_N: Baculov 21.4 86 0.0019 20.5 2.1 33 61-94 18-50 (97)
148 PRK09645 RNA polymerase sigma 21.3 1.1E+02 0.0024 20.8 2.8 32 58-89 133-164 (173)
149 KOG0177|consensus 21.3 72 0.0016 23.6 1.8 16 55-70 146-161 (200)
150 PF08988 DUF1895: Protein of u 21.1 1.5E+02 0.0032 18.1 3.0 19 94-112 35-53 (68)
151 TIGR02960 SigX5 RNA polymerase 20.9 3.8E+02 0.0081 20.3 6.0 36 57-92 156-191 (324)
152 COG0302 FolE GTP cyclohydrolas 20.9 2.4E+02 0.0053 20.9 4.5 31 64-94 21-56 (195)
153 PF13955 Fst_toxin: Toxin Fst, 20.9 91 0.002 14.8 1.5 9 5-13 7-15 (21)
154 smart00150 SPEC Spectrin repea 20.8 1.4E+02 0.0031 17.6 3.0 40 75-114 52-91 (101)
155 PRK12511 RNA polymerase sigma 20.8 1.6E+02 0.0035 20.6 3.6 40 57-96 125-167 (182)
156 PRK05439 pantothenate kinase; 20.7 2.1E+02 0.0045 22.5 4.4 37 55-91 24-60 (311)
157 PRK08241 RNA polymerase factor 20.6 1.9E+02 0.004 22.2 4.2 34 56-89 166-199 (339)
158 PRK09635 sigI RNA polymerase s 20.3 3E+02 0.0064 21.1 5.2 51 58-109 133-183 (290)
No 1
>KOG0723|consensus
Probab=99.97 E-value=1.9e-30 Score=171.56 Aligned_cols=107 Identities=61% Similarity=0.968 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCChhhhhhhcccccCCCCCCCCHHHHHHHhCCCCCCCHHHHHH
Q psy5623 3 STAILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKE 82 (116)
Q Consensus 3 ~~~i~~~~~v~~~~~~gra~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~ik~ 82 (116)
+++|++|++|+++++.||++++-+..+ .++++..+. ....++||+|+|++.||+.||..||||++.++.+.||+
T Consensus 2 ~~~i~~G~gvaa~a~ag~~gl~~~~~~----~qa~~~~~~--~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~Kike 75 (112)
T KOG0723|consen 2 VSPIIAGLGVAALAFAGRYGLWMKTLA----KQAFKTLPK--GPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKE 75 (112)
T ss_pred chhHHHhHHHHHHHHhchhhhhchhHH----HHHHHHcCC--CcchhhhhhcccccccchHHHHHHhCCCccccHHHHHH
Confidence 347889999999999999999933222 233444443 33356899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccC
Q psy5623 83 AHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 83 ~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~ 115 (116)
+||+++..||||+|||||+.++|||||++|...
T Consensus 76 aHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 76 AHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999864
No 2
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.94 E-value=2.9e-26 Score=155.14 Aligned_cols=111 Identities=35% Similarity=0.486 Sum_probs=84.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCChh-hhhhhcccc----cCCCCCCCCHHHHHHHhCCCCCC
Q psy5623 1 MASTAILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKA-ESFANSKYY----KGGFEPKMTKREASLILGVSQSA 75 (116)
Q Consensus 1 ma~~~i~~~~~v~~~~~~gra~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~m~~~eA~~iLgl~~~~ 75 (116)
|.-|+| + +++.++.+++|+++++|++......... ..|-+ .....+.|+ -.+|+..|+.+|||+||||++++
T Consensus 1 ~~~~~~-~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~A 77 (116)
T PTZ00100 1 MMWPIV-A-LTFGGGVLAVRYGYRYLKNQKIFGSNNM-SFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTA 77 (116)
T ss_pred CcchHH-H-HHHhHHHHHHHHHHHHHHHHhhccCccc-cCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCC
Confidence 444444 3 8888999999999999986653211000 01110 011122222 46899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q psy5623 76 NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQ 114 (116)
Q Consensus 76 ~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 114 (116)
|.+||+++||+|+++||||++||++.+++|++|||+|.+
T Consensus 78 s~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~k 116 (116)
T PTZ00100 78 SKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLLK 116 (116)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999974
No 3
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=99.94 E-value=5.1e-27 Score=161.23 Aligned_cols=109 Identities=30% Similarity=0.321 Sum_probs=46.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCChhhhhhhcccccCCCCCCCCHHHHHHHhCCCCCCCHHHH
Q psy5623 1 MASTAILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKI 80 (116)
Q Consensus 1 ma~~~i~~~~~v~~~~~~gra~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~i 80 (116)
||. .|+++++|+|+.++||+|++||+|+....+........ ........ .....||.+||++||||++..++++|
T Consensus 1 Ma~-riiaqiiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~---a~~~~~a~-~~~~~Mtl~EA~~ILnv~~~~~~eeI 75 (127)
T PF03656_consen 1 MAK-RIIAQIIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQN---ASARGAAA-SNSKGMTLDEARQILNVKEELSREEI 75 (127)
T ss_dssp -------------------------------------------------------------HHHHHHHHT--G--SHHHH
T ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccchhHH-hhcCCCCHHHHHHHcCCCCccCHHHH
Confidence 666 56699999999999999999999998433222221111 00111111 22348999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q psy5623 81 KEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQ 114 (116)
Q Consensus 81 k~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 114 (116)
.++|++|+..|+|++|||+|+++||.+|+|+|..
T Consensus 76 ~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 76 QKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQ 109 (127)
T ss_dssp HHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999974
No 4
>KOG3442|consensus
Probab=99.89 E-value=1.7e-22 Score=136.76 Aligned_cols=108 Identities=24% Similarity=0.313 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCChhhhhhhcccccCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHH
Q psy5623 5 AILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAH 84 (116)
Q Consensus 5 ~i~~~~~v~~~~~~gra~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~ik~~y 84 (116)
+.+++++|+|++++||+|++||+|...+..+......+ ...+..-........||++||.+||||++..++++|.++|
T Consensus 3 R~~aqiIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a--~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~y 80 (132)
T KOG3442|consen 3 RYLAQIIIMGSQVVGRAFVQAYRQEIAASQQAAARQAA--GKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRY 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHH
Confidence 45789999999999999999999998766544332221 0001111111223459999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q psy5623 85 KRIITLNHPDRGGSPYLAAKINEAKDLLEQ 114 (116)
Q Consensus 85 r~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 114 (116)
.+|+..|.|.+|||+|+++||.+|+|+|+.
T Consensus 81 ehLFevNdkskGGSFYLQSKVfRAkErld~ 110 (132)
T KOG3442|consen 81 EHLFEVNDKSKGGSFYLQSKVFRAKERLDE 110 (132)
T ss_pred HHHHhccCcccCcceeehHHHHHHHHHHHH
Confidence 999999999999999999999999999864
No 5
>PHA03102 Small T antigen; Reviewed
Probab=99.65 E-value=3e-16 Score=111.01 Aligned_cols=55 Identities=27% Similarity=0.333 Sum_probs=52.3
Q ss_pred CHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccC
Q psy5623 61 TKREASLILGVSQSA--NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~--~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~ 115 (116)
..+|++++|||++++ |.++||++||++++.+|||+||+++.|++||+||++|.++
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~ 59 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRES 59 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhH
Confidence 357999999999999 9999999999999999999999999999999999999874
No 6
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-16 Score=125.03 Aligned_cols=55 Identities=36% Similarity=0.481 Sum_probs=49.9
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhccC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~ 115 (116)
...+.|+||||+.++|.+|||+|||+|+++||||++. + ++.|++|++|||+|+|+
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~ 60 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCH
Confidence 3456689999999999999999999999999999986 4 58999999999999985
No 7
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.61 E-value=1.8e-15 Score=90.43 Aligned_cols=52 Identities=31% Similarity=0.402 Sum_probs=48.3
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-----SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g-----s~~~~~~i~~Ay~~L~~~ 115 (116)
++|++|||+++++.++|+++|+++++.+|||+++ ..+.|.+|++||++|.++
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999999999987 458999999999999876
No 8
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.60 E-value=2.2e-15 Score=88.41 Aligned_cols=50 Identities=32% Similarity=0.393 Sum_probs=46.6
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcc
Q psy5623 65 ASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQ 114 (116)
Q Consensus 65 A~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~ 114 (116)
.|++|||++++|.++|+++|++|++.+|||++++ ...|.+|++||++|.+
T Consensus 2 ~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 2 YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999874 6899999999999975
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.59 E-value=2.2e-15 Score=121.30 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=55.5
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccC
Q psy5623 56 FEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 56 ~~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~ 115 (116)
....|...+.|+||||++++|.+|||++||+|++++|||++++++.|++|++||++|++.
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~ 80 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDP 80 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccH
Confidence 445566789999999999999999999999999999999999999999999999999875
No 10
>KOG0713|consensus
Probab=99.55 E-value=5.7e-15 Score=114.81 Aligned_cols=53 Identities=28% Similarity=0.414 Sum_probs=48.6
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
++-|+||||+.+++..|||++||+|++++|||||.+ .+.|++|+.|||+|+++
T Consensus 16 rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDp 72 (336)
T KOG0713|consen 16 RDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDP 72 (336)
T ss_pred CCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCH
Confidence 456699999999999999999999999999999864 38999999999999985
No 11
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.53 E-value=4.6e-14 Score=85.52 Aligned_cols=52 Identities=35% Similarity=0.505 Sum_probs=47.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCH----HHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDR-GGSP----YLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk-~gs~----~~~~~i~~Ay~~L~~~ 115 (116)
++|+||||+++++.++|+++|+++++.+|||+ .++. +.+.+|++||++|.+.
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~ 57 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDP 57 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCH
Confidence 47899999999999999999999999999999 4555 7999999999999864
No 12
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.2e-14 Score=113.79 Aligned_cols=56 Identities=32% Similarity=0.469 Sum_probs=50.1
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhccC
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
|+..+.|+||||+++++.+|||++||+|++++|||++. ..+.|++|++||++|++.
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~ 59 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDK 59 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCH
Confidence 34457789999999999999999999999999999974 358999999999999975
No 13
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.47 E-value=1.2e-13 Score=105.42 Aligned_cols=58 Identities=31% Similarity=0.460 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-C-------HHHHHHHHHHHHHhccC
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRG---G-S-------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~---g-s-------~~~~~~i~~Ay~~L~~~ 115 (116)
..++.++||++||+++++|.++||++||+|++++|||+. | + .+.+++|++||++|++.
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999999993 2 2 26899999999999875
No 14
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=5.2e-14 Score=111.58 Aligned_cols=53 Identities=28% Similarity=0.321 Sum_probs=48.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~ 115 (116)
.+.|+||||++++|.+|||++||+|++++|||++. + .+.|++|++|||+|+++
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~ 59 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDE 59 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccH
Confidence 35689999999999999999999999999999975 2 47899999999999975
No 15
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=7.1e-14 Score=107.63 Aligned_cols=56 Identities=34% Similarity=0.427 Sum_probs=50.1
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
|+..+.|+||||++++|.+|||++||+|++++|||++.+ .+.|++|++||++|+++
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~ 59 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDP 59 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCH
Confidence 344578899999999999999999999999999999864 48899999999999874
No 16
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=6.4e-14 Score=111.18 Aligned_cols=56 Identities=34% Similarity=0.435 Sum_probs=49.9
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhccC
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~ 115 (116)
|+..+.|+||||+++++.+|||++||+|++++|||++. + .+.|++|++||++|+++
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccH
Confidence 34457889999999999999999999999999999975 2 48999999999999875
No 17
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.2e-13 Score=109.60 Aligned_cols=54 Identities=28% Similarity=0.378 Sum_probs=49.0
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 62 ~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
..+.|++|||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~ 59 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDP 59 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcH
Confidence 3577899999999999999999999999999999754 47899999999999875
No 18
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.3e-13 Score=110.09 Aligned_cols=53 Identities=28% Similarity=0.355 Sum_probs=49.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~ 115 (116)
.+.|+||||+++++.+|||++||+|++++|||+++ + .+.|++|++||++|+++
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~ 65 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDP 65 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcch
Confidence 57889999999999999999999999999999976 3 48999999999999986
No 19
>KOG0712|consensus
Probab=99.43 E-value=1.4e-13 Score=107.73 Aligned_cols=51 Identities=29% Similarity=0.385 Sum_probs=47.7
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhccC
Q psy5623 65 ASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-YLAAKINEAKDLLEQS 115 (116)
Q Consensus 65 A~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~-~~~~~i~~Ay~~L~~~ 115 (116)
-|+||||+++++.+|||++||+|++++|||||.+. +.|++|.+|||+|+++
T Consensus 6 ~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ 57 (337)
T KOG0712|consen 6 LYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDP 57 (337)
T ss_pred cceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 35899999999999999999999999999998765 9999999999999985
No 20
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.7e-13 Score=108.64 Aligned_cols=54 Identities=37% Similarity=0.471 Sum_probs=48.8
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccC
Q psy5623 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 62 ~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~ 115 (116)
..+.|+||||+++++.+|||++||+|++++|||++.. .+.|++|++||++|++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~ 61 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcCh
Confidence 3567899999999999999999999999999999752 47999999999999885
No 21
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2e-13 Score=108.16 Aligned_cols=53 Identities=30% Similarity=0.433 Sum_probs=48.3
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
.+.|+||||++++|.+|||++||+|++++|||++++ .+.|++|++||++|++.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDD 59 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 467899999999999999999999999999999753 37899999999999985
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.8e-13 Score=108.38 Aligned_cols=55 Identities=33% Similarity=0.450 Sum_probs=49.2
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhccC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~ 115 (116)
...+.|+||||+++++.+|||++||+|++++|||+++ + .+.|++|++||++|.+.
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcch
Confidence 3457889999999999999999999999999999975 3 37899999999999875
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.3e-13 Score=107.78 Aligned_cols=56 Identities=32% Similarity=0.461 Sum_probs=50.1
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
|+..+.|+||||+++++.+|||++||+|++++|||++++ .+.|++|++||++|++.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~ 60 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccH
Confidence 444678899999999999999999999999999999763 47899999999999875
No 24
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2e-13 Score=108.53 Aligned_cols=54 Identities=28% Similarity=0.309 Sum_probs=49.1
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 62 ~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
.++.|+||||++++|.+|||++||+|++++|||++.+ .+.|++|++||++|.+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDP 59 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCH
Confidence 3577899999999999999999999999999999754 58999999999999875
No 25
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.3e-13 Score=108.09 Aligned_cols=55 Identities=33% Similarity=0.433 Sum_probs=49.5
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhccC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
...+.|+||||+++++.+|||++||+|++++|||++. ..+.|++|++||++|++.
T Consensus 2 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (376)
T PRK14280 2 AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDD 59 (376)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccH
Confidence 3357889999999999999999999999999999975 358999999999999875
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=3.2e-13 Score=107.33 Aligned_cols=54 Identities=30% Similarity=0.428 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhccC
Q psy5623 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 62 ~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
..+.|++|||+++++.+|||++||+|++++|||++. ..+.|++|++||++|++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~ 60 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDD 60 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchh
Confidence 356789999999999999999999999999999974 458999999999999875
No 27
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=3.8e-13 Score=106.92 Aligned_cols=53 Identities=30% Similarity=0.397 Sum_probs=48.6
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
.+.|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|.+.
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 60 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDA 60 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcch
Confidence 477899999999999999999999999999999754 47899999999999875
No 28
>PHA02624 large T antigen; Provisional
Probab=99.40 E-value=6.3e-13 Score=110.73 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=51.5
Q ss_pred HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccC
Q psy5623 62 KREASLILGVSQSA--NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 62 ~~eA~~iLgl~~~~--~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~ 115 (116)
.+++|++|||++++ +.++||++||++++++|||+||+++.|++|++||++|.+.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~ 65 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEG 65 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcH
Confidence 46899999999999 9999999999999999999999999999999999999874
No 29
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=3.3e-13 Score=107.16 Aligned_cols=55 Identities=29% Similarity=0.417 Sum_probs=49.2
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
+..+.|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|+++
T Consensus 2 ~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (373)
T PRK14301 2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60 (373)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcch
Confidence 34578899999999999999999999999999999753 36899999999999975
No 30
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=3e-13 Score=107.52 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=47.9
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP---YLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~---~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.+|||++||+|++++|||+++++ +.|++|++||++|.+.
T Consensus 4 d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~ 58 (378)
T PRK14278 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDP 58 (378)
T ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchh
Confidence 567999999999999999999999999999998764 6899999999999875
No 31
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.38 E-value=5.1e-13 Score=103.51 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=49.9
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhccC
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
|+..+.|++|||+++++.+|||++||+|++++|||++. ..+.|++|++||++|++.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~ 59 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDE 59 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhH
Confidence 33457889999999999999999999999999999975 458999999999999874
No 32
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=6.2e-13 Score=106.12 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=48.6
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGG----SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g----s~~~~~~i~~Ay~~L~~~ 115 (116)
.+.|+||||+++++.+|||++||+|++++|||++. ..+.|++|++||++|++.
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 65 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE 65 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch
Confidence 57899999999999999999999999999999975 248999999999999875
No 33
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=5.2e-13 Score=106.14 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=48.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
.+.|++|||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|+++
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 467899999999999999999999999999999753 37899999999999985
No 34
>KOG0721|consensus
Probab=99.38 E-value=6.8e-13 Score=98.06 Aligned_cols=54 Identities=30% Similarity=0.402 Sum_probs=49.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHhccCC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDR----GGSPYLAAKINEAKDLLEQSK 116 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk----~gs~~~~~~i~~Ay~~L~~~~ 116 (116)
-+.++||||+++++..|||++||+|.+++|||| +++++.+..|+.||+.|.+.+
T Consensus 99 fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~ 156 (230)
T KOG0721|consen 99 FDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKK 156 (230)
T ss_pred CCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchh
Confidence 466899999999999999999999999999999 678899999999999998753
No 35
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=5.2e-13 Score=106.40 Aligned_cols=53 Identities=32% Similarity=0.433 Sum_probs=48.3
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
.+.|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|++.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 61 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDP 61 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCH
Confidence 467899999999999999999999999999999752 36899999999999975
No 36
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=8.5e-13 Score=105.53 Aligned_cols=53 Identities=32% Similarity=0.470 Sum_probs=48.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
.+.|+||||+++++.+|||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSND 59 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhh
Confidence 367899999999999999999999999999999763 47899999999999875
No 37
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.5e-12 Score=103.69 Aligned_cols=52 Identities=35% Similarity=0.416 Sum_probs=48.0
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.++||++||+|++++|||++.+ .+.|++|++||++|++.
T Consensus 4 d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~ 58 (382)
T PRK14291 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDP 58 (382)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 56799999999999999999999999999999753 58899999999999975
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.6e-12 Score=103.19 Aligned_cols=53 Identities=30% Similarity=0.418 Sum_probs=48.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
.+.|+||||++++|.+|||++||+|++++|||++.+ .+.|++|++||++|.+.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~ 58 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDE 58 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhH
Confidence 467899999999999999999999999999999753 47999999999999874
No 39
>KOG0717|consensus
Probab=99.33 E-value=2.4e-12 Score=103.65 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=50.4
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~ 115 (116)
.....|++|||..+++.++||++||+|++++|||++++ .+.|+.|+.||++|+++
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp 65 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDP 65 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcCh
Confidence 34678999999999999999999999999999999875 37899999999999986
No 40
>KOG0716|consensus
Probab=99.33 E-value=2.9e-12 Score=97.30 Aligned_cols=56 Identities=25% Similarity=0.413 Sum_probs=50.9
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
.....-|.+||++.+++.++||++||+|++++|||++|+ ...|..||.||++|.+.
T Consensus 28 ~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~ 87 (279)
T KOG0716|consen 28 VIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDP 87 (279)
T ss_pred cchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcCh
Confidence 336788999999999999999999999999999999875 48999999999999875
No 41
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.31 E-value=2.8e-12 Score=100.96 Aligned_cols=51 Identities=35% Similarity=0.449 Sum_probs=47.0
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 65 ASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 65 A~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
.|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|++.
T Consensus 2 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 55 (354)
T TIGR02349 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDP 55 (354)
T ss_pred hHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhCh
Confidence 4799999999999999999999999999999853 47999999999999875
No 42
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=2.9e-12 Score=102.26 Aligned_cols=52 Identities=29% Similarity=0.431 Sum_probs=47.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|.+.
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 57 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA 57 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH
Confidence 45799999999999999999999999999999763 47899999999999875
No 43
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=2.9e-12 Score=102.03 Aligned_cols=54 Identities=31% Similarity=0.377 Sum_probs=48.8
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhccC
Q psy5623 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 62 ~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~ 115 (116)
..+.|++|||++++|.+||+++||+|++++|||++. + .+.|++|++||++|.+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~ 61 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence 357889999999999999999999999999999975 3 47899999999999875
No 44
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=3.2e-12 Score=101.22 Aligned_cols=52 Identities=29% Similarity=0.363 Sum_probs=47.5
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|++.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (365)
T PRK14290 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60 (365)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcCh
Confidence 56899999999999999999999999999999753 37899999999999975
No 45
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=4.2e-12 Score=100.61 Aligned_cols=52 Identities=35% Similarity=0.436 Sum_probs=47.9
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~ 57 (371)
T PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDA 57 (371)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcch
Confidence 46899999999999999999999999999999864 47899999999999875
No 46
>KOG0715|consensus
Probab=99.26 E-value=7.7e-12 Score=96.47 Aligned_cols=58 Identities=28% Similarity=0.392 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhccC
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
..++.+..|+||||+.+++..|||.+|++|++++|||.+. ....|++|.+|||+|.+.
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~ 98 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDE 98 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCH
Confidence 3445558999999999999999999999999999999864 458999999999999874
No 47
>KOG0718|consensus
Probab=99.25 E-value=1.3e-11 Score=99.65 Aligned_cols=55 Identities=27% Similarity=0.404 Sum_probs=50.4
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhccC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-------YLAAKINEAKDLLEQS 115 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~ 115 (116)
...|-|.+|||++++|.+||+++||++.+.+||||.-|+ +.|++|.+|||+|+|+
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp 68 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDP 68 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcCh
Confidence 345889999999999999999999999999999997654 7899999999999986
No 48
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=9.6e-12 Score=98.76 Aligned_cols=52 Identities=31% Similarity=0.411 Sum_probs=47.7
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.+||+++||+|++++|||++. ..+.|++|++||++|++.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~ 58 (374)
T PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDP 58 (374)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhch
Confidence 5689999999999999999999999999999975 358999999999999875
No 49
>KOG0691|consensus
Probab=99.19 E-value=3.6e-11 Score=92.98 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=48.6
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-P---YLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-~---~~~~~i~~Ay~~L~~~ 115 (116)
.|.|.|||++++++..+|+++||..++.+|||||.+ | +.|+++.+||++|.+.
T Consensus 5 ~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~ 61 (296)
T KOG0691|consen 5 TDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDE 61 (296)
T ss_pred chHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence 578899999999999999999999999999999763 3 8899999999999874
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=6.5e-11 Score=84.54 Aligned_cols=54 Identities=31% Similarity=0.374 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C----HHHHHHHHHHHHHhccC
Q psy5623 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 62 ~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g-s----~~~~~~i~~Ay~~L~~~ 115 (116)
..+.|+||||.++++.+||+++||++++++|||+++ + .+.|+.|++||++|.+.
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~ 63 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDP 63 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCH
Confidence 356789999999999999999999999999999965 3 38999999999999874
No 51
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.12 E-value=9e-11 Score=101.63 Aligned_cols=55 Identities=25% Similarity=0.178 Sum_probs=49.8
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
...+.|+||||+++++..+||++||+|++++|||++.+ ...|++|++||++|+++
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp 628 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDI 628 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCH
Confidence 34688999999999999999999999999999999763 47899999999999985
No 52
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.09 E-value=1.2e-10 Score=98.79 Aligned_cols=52 Identities=35% Similarity=0.607 Sum_probs=47.2
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP---YLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~---~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.++||++||+|++++|||++++. ..|++|++||++|++.
T Consensus 3 DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP 57 (871)
T TIGR03835 3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNP 57 (871)
T ss_pred ChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCH
Confidence 568999999999999999999999999999997653 5799999999999874
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.05 E-value=3.4e-10 Score=81.15 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=44.5
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGGSP-------YLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~--~~~~~ik~~yr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~ 115 (116)
..|++|||++. ++..+|+++||+|.+++|||+..+. ..+..||+||++|+++
T Consensus 3 ~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp 63 (166)
T PRK01356 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDA 63 (166)
T ss_pred CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 35799999997 7899999999999999999996543 2367999999999875
No 54
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.05 E-value=4.8e-10 Score=80.67 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhccC
Q psy5623 65 ASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGG--SP-------YLAAKINEAKDLLEQS 115 (116)
Q Consensus 65 A~~iLgl~~~--~~~~~ik~~yr~l~~~~HPDk~g--s~-------~~~~~i~~Ay~~L~~~ 115 (116)
.|++|||++. ++..+|+++||+|.+.+|||+.. ++ ..+..||+||++|+++
T Consensus 3 yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp 64 (171)
T PRK05014 3 YFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHP 64 (171)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 5799999996 68899999999999999999943 22 4678899999999976
No 55
>KOG0719|consensus
Probab=98.99 E-value=6.6e-10 Score=83.24 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=47.1
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHhcc
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGG------SPYLAAKINEAKDLLEQ 114 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g------s~~~~~~i~~Ay~~L~~ 114 (116)
+.|+||||..+++..+|+++|++|++++|||++. ..+.|++++.||.+|.+
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsD 71 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSD 71 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhH
Confidence 7899999999999999999999999999999974 34889999999999965
No 56
>KOG0722|consensus
Probab=98.99 E-value=3.4e-10 Score=85.97 Aligned_cols=53 Identities=32% Similarity=0.490 Sum_probs=49.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
+++|++|||..+++..||.++||+|++++|||++. +..+|.+|..|||+|.++
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~ 88 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDN 88 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccch
Confidence 89999999999999999999999999999999965 447899999999999875
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.97 E-value=1.1e-09 Score=79.28 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=44.6
Q ss_pred HHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGG--SP-------YLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~--~~~~~ik~~yr~l~~~~HPDk~g--s~-------~~~~~i~~Ay~~L~~~ 115 (116)
...|++|||++. .+..+|+++||+|.+++|||+.. +. ..++.||+||++|+++
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p 69 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDP 69 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 467799999986 68899999999999999999953 22 3357999999999876
No 58
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.96 E-value=1.2e-09 Score=78.91 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=44.1
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGG--S-------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~--~~~~~ik~~yr~l~~~~HPDk~g--s-------~~~~~~i~~Ay~~L~~~ 115 (116)
..+++||+++. .+..+|+++||+|.+++|||+.. + ...+..||+||++|+++
T Consensus 5 ~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p 67 (173)
T PRK00294 5 CHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSP 67 (173)
T ss_pred ChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 34699999997 67899999999999999999943 2 24678999999999875
No 59
>KOG1789|consensus
Probab=98.86 E-value=5.5e-09 Score=91.47 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhc
Q psy5623 57 EPKMTKREASLILGVSQS----ANRMKIKEAHKRIITLNHPDRGGS-PYLAAKINEAKDLLE 113 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~----~~~~~ik~~yr~l~~~~HPDk~gs-~~~~~~i~~Ay~~L~ 113 (116)
...|+.++|++||+++-+ .++++||++|++|+.++|||||+. -+.|.+||.|||+|.
T Consensus 1275 P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1275 PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 456899999999999764 355899999999999999999874 589999999999997
No 60
>KOG0720|consensus
Probab=98.84 E-value=3e-09 Score=85.92 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=49.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
.+||.+|||+++++.++||+.||+++...||||+-. ++.|+++..|||+|.++
T Consensus 235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~ 290 (490)
T KOG0720|consen 235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDS 290 (490)
T ss_pred CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcch
Confidence 469999999999999999999999999999999865 48999999999999865
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.64 E-value=7.6e-08 Score=69.46 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=43.7
Q ss_pred HHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCC--CC-------HHHHHHHHHHHHHhccC
Q psy5623 65 ASLILGVSQS--ANRMKIKEAHKRIITLNHPDRG--GS-------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 65 A~~iLgl~~~--~~~~~ik~~yr~l~~~~HPDk~--gs-------~~~~~~i~~Ay~~L~~~ 115 (116)
.+++|||++. .+...++++|++|.+.+|||+- .+ ......||+||.+|+++
T Consensus 4 yF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdP 65 (173)
T PRK01773 4 PFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDP 65 (173)
T ss_pred hHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 4689999987 7999999999999999999993 22 24578899999999986
No 62
>KOG1150|consensus
Probab=98.63 E-value=4e-08 Score=72.45 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=44.6
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-----YLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~-----~~~~~i~~Ay~~L~~~ 115 (116)
.+|++|.++|+.+.++|+++||+|.+..|||+|.+. ..|.-|..||..|.+.
T Consensus 54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~ 110 (250)
T KOG1150|consen 54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLEND 110 (250)
T ss_pred ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCH
Confidence 478999999999999999999999999999999865 3456678888887653
No 63
>KOG0568|consensus
Probab=98.63 E-value=7.3e-08 Score=72.71 Aligned_cols=51 Identities=29% Similarity=0.369 Sum_probs=46.5
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHh
Q psy5623 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLL 112 (116)
Q Consensus 62 ~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L 112 (116)
..|++.|||+.++++.++|+.+|..|++++|||.|. +.+.|.+|.+||..+
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkv 99 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKV 99 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999875 568999999999833
No 64
>KOG0624|consensus
Probab=98.61 E-value=5.5e-08 Score=77.26 Aligned_cols=53 Identities=28% Similarity=0.379 Sum_probs=47.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-------YLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~ 115 (116)
++.|+||||..+++..||.++||+++.+||||.-.++ -.|-.|..|+|+|.++
T Consensus 394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~ 453 (504)
T KOG0624|consen 394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP 453 (504)
T ss_pred chHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH
Confidence 5778999999999999999999999999999986654 3677799999999874
No 65
>KOG0714|consensus
Probab=98.58 E-value=4.4e-08 Score=73.05 Aligned_cols=53 Identities=32% Similarity=0.482 Sum_probs=45.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-----YLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~-----~~~~~i~~Ay~~L~~~ 115 (116)
.+.|.||++..+++.++|+++|+++++.+|||++.+. ..|.+|.+||++|.+.
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~ 60 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDP 60 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCH
Confidence 4678999999999888999999999999999996544 3578888999998864
No 66
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.50 E-value=2e-07 Score=66.20 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC--CC-------HHHHHHHHHHHHHhccC
Q psy5623 75 ANRMKIKEAHKRIITLNHPDRG--GS-------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 75 ~~~~~ik~~yr~l~~~~HPDk~--gs-------~~~~~~i~~Ay~~L~~~ 115 (116)
.+..+|+++||+|.+.+|||+. .+ ...++.||+||++|+++
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p 52 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDP 52 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCCh
Confidence 4788999999999999999983 22 26788999999999976
No 67
>KOG0550|consensus
Probab=98.50 E-value=1.4e-07 Score=76.01 Aligned_cols=53 Identities=30% Similarity=0.495 Sum_probs=47.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CC----HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~-gs----~~~~~~i~~Ay~~L~~~ 115 (116)
.+.|.|||+...++.+||+++||++.+.||||++ |+ +.+|..|-+||.+|.+.
T Consensus 373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~ 430 (486)
T KOG0550|consen 373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDP 430 (486)
T ss_pred hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCH
Confidence 5678999999999999999999999999999995 45 36899999999999875
No 68
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.48 E-value=1.2e-07 Score=77.07 Aligned_cols=52 Identities=25% Similarity=0.320 Sum_probs=45.8
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~ 115 (116)
+.|+|||++.+++..+||++||+|..++||||-.. ++...+|+.||+.|.+.
T Consensus 99 DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~ 159 (610)
T COG5407 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDK 159 (610)
T ss_pred ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhH
Confidence 34799999999999999999999999999999543 36788999999999764
No 69
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=7e-05 Score=57.86 Aligned_cols=53 Identities=30% Similarity=0.464 Sum_probs=46.5
Q ss_pred HHHHHHhCCCC---CCCHHHHHHHHHHHHHHhCCCC---CC---CHHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQ---SANRMKIKEAHKRIITLNHPDR---GG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~---~~~~~~ik~~yr~l~~~~HPDk---~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
.+-|.+|||+. .+++.+|.+++++.+..+|||+ || +.+.|.-|..|||+|.++
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~ 104 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccH
Confidence 57789999986 4788999999999999999998 33 578999999999999875
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=6.8e-05 Score=53.90 Aligned_cols=50 Identities=30% Similarity=0.450 Sum_probs=43.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC---CCCH--------HHHHHHHHHHHHh
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDR---GGSP--------YLAAKINEAKDLL 112 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk---~gs~--------~~~~~i~~Ay~~L 112 (116)
.+++.+|+++...+..+|+++|++++..+|||+ -|.+ +.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999998 3432 5677788888754
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.28 E-value=0.0018 Score=38.84 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy5623 59 KMTKREASLILGVSQSANRMKIKEAHKRIIT 89 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~ 89 (116)
.|+.++||++||++++.+.+.|-..|+....
T Consensus 1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999999999999888
No 72
>KOG0431|consensus
Probab=96.92 E-value=0.001 Score=54.49 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC-CC---C---HHHHHHHHHHHH
Q psy5623 74 SANRMKIKEAHKRIITLNHPDR-GG---S---PYLAAKINEAKD 110 (116)
Q Consensus 74 ~~~~~~ik~~yr~l~~~~HPDk-~g---s---~~~~~~i~~Ay~ 110 (116)
-.+.+.||++|||-.+..|||| .+ + .|++.+|+.++.
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~ 442 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALS 442 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHH
Confidence 3589999999999999999999 22 2 367777765554
No 73
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=95.71 E-value=0.029 Score=41.25 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q psy5623 72 SQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLE 113 (116)
Q Consensus 72 ~~~~~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~ 113 (116)
+++++.|||++++.++..++ +|++....+|..|||.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999 899999999999999774
No 74
>KOG3192|consensus
Probab=95.16 E-value=0.058 Score=38.57 Aligned_cols=53 Identities=30% Similarity=0.354 Sum_probs=40.9
Q ss_pred HHHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCC-------C--HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQ--SANRMKIKEAHKRIITLNHPDRGG-------S--PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~--~~~~~~ik~~yr~l~~~~HPDk~g-------s--~~~~~~i~~Ay~~L~~~ 115 (116)
..-+.+||.+. ..+++.+...|-...++.|||+-+ + .+...+||+||+.|.++
T Consensus 8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~p 71 (168)
T KOG3192|consen 8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDP 71 (168)
T ss_pred HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhH
Confidence 34558888765 467777887999999999999833 1 26678899999999874
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.16 Score=36.35 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHhccC
Q psy5623 76 NRMKIKEAHKRIITLNHPDRGGSP---------YLAAKINEAKDLLEQS 115 (116)
Q Consensus 76 ~~~~ik~~yr~l~~~~HPDk~gs~---------~~~~~i~~Ay~~L~~~ 115 (116)
+.+.++..|+.+.+.+|||+.++. ..+..+|.||..|++.
T Consensus 16 ~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~ 64 (174)
T COG1076 16 DLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDP 64 (174)
T ss_pred HHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHH
Confidence 456788999999999999996542 3566789999888753
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=87.79 E-value=0.76 Score=30.90 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy5623 75 ANRMKIKEAHKRIITLNHPDRGGSPYLAAKIN 106 (116)
Q Consensus 75 ~~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~ 106 (116)
.+..+++.+-|...++.|||.-++.-..+++|
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~N 37 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPEEKQVN 37 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChHHHHhh
Confidence 45678999999999999999855432344444
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=78.61 E-value=12 Score=23.62 Aligned_cols=25 Identities=8% Similarity=0.219 Sum_probs=21.0
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5623 67 LILGVSQSANRMKIKEAHKRIITLN 91 (116)
Q Consensus 67 ~iLgl~~~~~~~~ik~~yr~l~~~~ 91 (116)
+++|+++.++.+||+.+-++.+.+.
T Consensus 7 ~LfnfdPPAT~~EvrdAAlQfVRKl 31 (88)
T COG5552 7 ELFNFDPPATPVEVRDAALQFVRKL 31 (88)
T ss_pred HHhCCCCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999877666654
No 78
>KOG3767|consensus
Probab=77.19 E-value=3 Score=33.02 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHhC------CCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy5623 56 FEPKMTKREASLILG------VSQSANRMKIKEAHKRIITLNHPDRGG 97 (116)
Q Consensus 56 ~~~~m~~~eA~~iLg------l~~~~~~~~ik~~yr~l~~~~HPDk~g 97 (116)
|.+.-..+||.+|+. ++++.+.+++-++.+..--.+|||.|.
T Consensus 41 f~s~~~le~ar~iv~~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDTgE 88 (328)
T KOG3767|consen 41 FVSEKKLEEARQIVEDYKAGKVPPGLTDDELWKAKKLYDSTFHPDTGE 88 (328)
T ss_pred hhhHHHHHHHHHHHHhhccCCcCCCCcHHHHHHHHHHHhcccCCCCCC
Confidence 334445688989873 445578999999999999999999863
No 79
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=75.15 E-value=3.9 Score=32.14 Aligned_cols=41 Identities=27% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHh-----CCC-CCCCHHHHHHHHHHHHHHhCCCCC
Q psy5623 56 FEPKMTKREASLIL-----GVS-QSANRMKIKEAHKRIITLNHPDRG 96 (116)
Q Consensus 56 ~~~~m~~~eA~~iL-----gl~-~~~~~~~ik~~yr~l~~~~HPDk~ 96 (116)
|.+.-..++|.++| |-. ++.+.+|+-++.+..--..|||.|
T Consensus 23 ~~S~~~l~~a~~ll~~~~~g~~~~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 23 FASEAELEEAKELLEDYRAGKVPPGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhcccCCCCC
Confidence 34455678888888 322 235899999999999999999986
No 80
>PF12669 P12: Virus attachment protein p12 family
Probab=58.99 E-value=11 Score=22.33 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHh
Q psy5623 6 ILTGLGLAAVGYA-GRYILKAA 26 (116)
Q Consensus 6 i~~~~~v~~~~~~-gra~~~a~ 26 (116)
||+.++++.+.++ .|.+++..
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~~ 24 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKDK 24 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444433 36666554
No 81
>KOG0724|consensus
Probab=58.60 E-value=15 Score=28.62 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC--------CCHHHHHHHHHHHHHhcc
Q psy5623 75 ANRMKIKEAHKRIITLNHPDRG--------GSPYLAAKINEAKDLLEQ 114 (116)
Q Consensus 75 ~~~~~ik~~yr~l~~~~HPDk~--------gs~~~~~~i~~Ay~~L~~ 114 (116)
++..+++..|+.....+|||+- ...+.+.+|.+||+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~ 51 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDD 51 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 4567888999999999999874 234678889999999875
No 82
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=57.56 E-value=19 Score=23.30 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=14.7
Q ss_pred HHHHHHhC---CCCCCCHHHHHHHHHHH
Q psy5623 63 REASLILG---VSQSANRMKIKEAHKRI 87 (116)
Q Consensus 63 ~eA~~iLg---l~~~~~~~~ik~~yr~l 87 (116)
++|.+|-. =.....+..|+++||+|
T Consensus 63 E~A~~Vq~~~~~~~pl~P~hlreA~rrL 90 (90)
T PF04719_consen 63 EEARDVQEEWGETGPLQPDHLREAYRRL 90 (90)
T ss_dssp HHHHHHHHHTT--SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHhC
Confidence 45555533 12246788999999987
No 83
>KOG2070|consensus
Probab=53.36 E-value=6.6 Score=33.21 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhccC
Q psy5623 82 EAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 82 ~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
+--.|.+..+|||+|. +-..|+.+..-++.|++.
T Consensus 248 QELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRkq 284 (661)
T KOG2070|consen 248 QELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRKQ 284 (661)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345678889999975 445666666666655543
No 84
>PF12728 HTH_17: Helix-turn-helix domain
Probab=52.89 E-value=9.4 Score=21.13 Aligned_cols=15 Identities=47% Similarity=0.733 Sum_probs=12.9
Q ss_pred CCHHHHHHHhCCCCC
Q psy5623 60 MTKREASLILGVSQS 74 (116)
Q Consensus 60 m~~~eA~~iLgl~~~ 74 (116)
||.+|+.++||++..
T Consensus 2 lt~~e~a~~l~is~~ 16 (51)
T PF12728_consen 2 LTVKEAAELLGISRS 16 (51)
T ss_pred CCHHHHHHHHCcCHH
Confidence 688999999999654
No 85
>KOG1573|consensus
Probab=51.47 E-value=30 Score=25.23 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHhC--C---CCCCCHHHHHHHHH--HHHHHhCCCCC
Q psy5623 57 EPKMTKREASLILG--V---SQSANRMKIKEAHK--RIITLNHPDRG 96 (116)
Q Consensus 57 ~~~m~~~eA~~iLg--l---~~~~~~~~ik~~yr--~l~~~~HPDk~ 96 (116)
...|+.-||+++|+ + +|+.+...|.-+|. .-+++.|||+.
T Consensus 70 ~~kM~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~d 116 (204)
T KOG1573|consen 70 KMKMTIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDED 116 (204)
T ss_pred hhheeHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCcc
Confidence 36799999999997 3 34567777888876 45778999973
No 86
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=49.41 E-value=37 Score=22.44 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=28.6
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhCCCC---------CCCHHH
Q psy5623 67 LILGVSQSANRMKIKEAHKRIITLNHPDR---------GGSPYL 101 (116)
Q Consensus 67 ~iLgl~~~~~~~~ik~~yr~l~~~~HPDk---------~gs~~~ 101 (116)
..+++.++.+.+++++++++.+...+++. |||++.
T Consensus 31 ~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n 74 (116)
T TIGR00824 31 GAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYN 74 (116)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 45778888899999999999999987654 788854
No 87
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=48.38 E-value=29 Score=27.51 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy5623 57 EPKMTKREASLILG-----VSQSANRMKIKEAHKRIITLNHPDRGG 97 (116)
Q Consensus 57 ~~~m~~~eA~~iLg-----l~~~~~~~~ik~~yr~l~~~~HPDk~g 97 (116)
.+....++|.+++. ..+..+.+|+-++=+-.--..|||.|.
T Consensus 33 ~s~~~L~~a~~ll~~yr~g~~~~~t~~~lW~Akk~~dS~~HPDTGe 78 (318)
T TIGR00798 33 SSEKQLEKAREIVEDYKAGKASPLTVDELWRAKKLYDSAFHPDTGE 78 (318)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcCCCCCC
Confidence 34445567777764 223345567766666666679999863
No 88
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=47.45 E-value=24 Score=24.81 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5623 57 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPD 94 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPD 94 (116)
-..||.+|.-++||++++.-...+..+-++|-+-..||
T Consensus 144 ~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~~~~~ 181 (185)
T PRK09649 144 LLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPD 181 (185)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCcc
Confidence 45677788888888877765666666666666655555
No 89
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=46.53 E-value=29 Score=20.16 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=30.2
Q ss_pred cccccCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy5623 49 SKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRII 88 (116)
Q Consensus 49 ~~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~ 88 (116)
.+||. .....+..|--+.||+++..-.+.+|++-++++
T Consensus 15 ~GYfd--~PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 15 LGYFD--VPRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred cCCCC--CCCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34552 345678899999999999988889999999886
No 90
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=45.61 E-value=15 Score=19.47 Aligned_cols=15 Identities=47% Similarity=0.574 Sum_probs=12.9
Q ss_pred CCHHHHHHHhCCCCC
Q psy5623 60 MTKREASLILGVSQS 74 (116)
Q Consensus 60 m~~~eA~~iLgl~~~ 74 (116)
||.+|+.+.||++..
T Consensus 2 lt~~e~a~~lgis~~ 16 (49)
T TIGR01764 2 LTVEEAAEYLGVSKD 16 (49)
T ss_pred CCHHHHHHHHCCCHH
Confidence 688999999999765
No 91
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=44.53 E-value=21 Score=14.91 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=6.9
Q ss_pred HHHHHHHHHHh
Q psy5623 102 AAKINEAKDLL 112 (116)
Q Consensus 102 ~~~i~~Ay~~L 112 (116)
+.+|..||+.|
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 45666666665
No 92
>PF13056 DUF3918: Protein of unknown function (DUF3918)
Probab=44.01 E-value=25 Score=19.74 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=15.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q psy5623 2 ASTAILTGLGLAAVGYAGRYIL 23 (116)
Q Consensus 2 a~~~i~~~~~v~~~~~~gra~~ 23 (116)
.+|+|.+|+++++..+..|.-.
T Consensus 5 mtSlla~GaG~aAy~~A~~n~m 26 (43)
T PF13056_consen 5 MTSLLAFGAGAAAYQMAQRNDM 26 (43)
T ss_pred HHHHHHHhHHHHHHHHHHHccc
Confidence 3677888888877777666543
No 93
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=41.43 E-value=29 Score=24.73 Aligned_cols=12 Identities=25% Similarity=-0.072 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q psy5623 100 YLAAKINEAKDL 111 (116)
Q Consensus 100 ~~~~~i~~Ay~~ 111 (116)
..+.++|.+|+-
T Consensus 99 ~~l~~lN~~Y~~ 110 (166)
T PRK13798 99 AALAAGNRAYEE 110 (166)
T ss_pred HHHHHHHHHHHH
Confidence 567788899873
No 94
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=41.18 E-value=53 Score=20.04 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5623 57 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPD 94 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPD 94 (116)
.-+++..||-+.||+++..-. +--..||+-.++..|.
T Consensus 11 s~~~s~~~Aa~~lG~~~~~v~-~wv~~fR~wll~LDPS 47 (65)
T PF05344_consen 11 SQQISVAQAADRLGTDPGTVR-RWVRMFRQWLLQLDPS 47 (65)
T ss_pred cccccHHHHHHHHCcCHHHHH-HHHHHHHHHHHHcCCC
Confidence 456888999999999887533 4446799999999883
No 95
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=40.29 E-value=69 Score=20.59 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5623 1 MASTAILTGLGLAAVGYAGRYILKAAP 27 (116)
Q Consensus 1 ma~~~i~~~~~v~~~~~~gra~~~a~~ 27 (116)
|.+=.|+.+++.+.+.++|....+.++
T Consensus 1 Mi~l~iv~~~~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 1 MINLQIVGGVGAVVALILAYLWWKVKK 27 (87)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655455567777778888888888776
No 96
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=39.33 E-value=73 Score=18.78 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=19.3
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPD 94 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPD 94 (116)
+...|.+.||-.+..+.+++-+..-+ ..+.||+
T Consensus 28 d~~kA~~~LgW~p~~~L~~~i~~~w~-W~~~np~ 60 (62)
T PF13950_consen 28 DISKAREELGWKPKYSLEDMIRDAWN-WQKKNPN 60 (62)
T ss_dssp --HHHHHHC----SSSHHHHHHHHHH-HHHHSTT
T ss_pred CHHHHHHHhCCCcCCCHHHHHHHHHH-HHHHCcC
Confidence 45789999999999888875544444 4566774
No 97
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=38.97 E-value=20 Score=18.06 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHhCCC
Q psy5623 77 RMKIKEAHKRIITLNHPD 94 (116)
Q Consensus 77 ~~~ik~~yr~l~~~~HPD 94 (116)
.+++...+++++-..|||
T Consensus 25 ~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 25 LEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHH----------
T ss_pred HHHHHHHHHHHhcccccC
Confidence 356777788888888987
No 98
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=38.32 E-value=22 Score=22.04 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=20.2
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHHhCC
Q psy5623 68 ILGVSQSANRMKIKEAHKRIITLNHP 93 (116)
Q Consensus 68 iLgl~~~~~~~~ik~~yr~l~~~~HP 93 (116)
|..|..+.+.++||+.|.+++....|
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCH
Confidence 45567778889999999988887655
No 99
>KOG3960|consensus
Probab=38.16 E-value=23 Score=27.40 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhccC
Q psy5623 100 YLAAKINEAKDLLEQS 115 (116)
Q Consensus 100 ~~~~~i~~Ay~~L~~~ 115 (116)
...+|||||+|+|+..
T Consensus 128 RRLkKVNEAFE~LKRr 143 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKRR 143 (284)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4688999999999853
No 100
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=38.05 E-value=51 Score=20.16 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=15.1
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHH
Q psy5623 59 KMTKREASLILGVSQSANRMKIK 81 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~ik 81 (116)
.+|.+|-+++||++.+.+.++-.
T Consensus 45 gks~eeir~~fgi~~d~t~eee~ 67 (78)
T PF01466_consen 45 GKSPEEIRKYFGIENDLTPEEEE 67 (78)
T ss_dssp TS-HHHHHHHHT---TSSHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHH
Confidence 36889999999999998876643
No 101
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=36.58 E-value=70 Score=20.41 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=23.3
Q ss_pred hCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5623 69 LGVSQSA-NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAK 109 (116)
Q Consensus 69 Lgl~~~~-~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay 109 (116)
-|++|+. ...++-+.|..++..+++ +++..+..+.+.|
T Consensus 50 ~g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y 88 (118)
T PF07739_consen 50 EGVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY 88 (118)
T ss_dssp HT--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 3666664 446788888888887765 7777777777666
No 102
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=35.53 E-value=48 Score=22.60 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPD 94 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPD 94 (116)
..++..|.-++||++++.-...+.++-++|-...-||
T Consensus 127 ~g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 163 (164)
T PRK12547 127 SGFSYEDAAAICGCAVGTIKSRVSRARNRLQELLKVD 163 (164)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666666666554555555555555444443
No 103
>COG2879 Uncharacterized small protein [Function unknown]
Probab=35.19 E-value=35 Score=20.79 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCCCCC
Q psy5623 83 AHKRIITLNHPDRGG 97 (116)
Q Consensus 83 ~yr~l~~~~HPDk~g 97 (116)
.|-.-++.+|||+..
T Consensus 27 nYVehmr~~hPd~p~ 41 (65)
T COG2879 27 NYVEHMRKKHPDKPP 41 (65)
T ss_pred HHHHHHHHhCcCCCc
Confidence 488889999999965
No 104
>smart00427 H2B Histone H2B.
Probab=35.09 E-value=52 Score=21.28 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=11.7
Q ss_pred HHHHHHhCCCCCCCH
Q psy5623 85 KRIITLNHPDRGGSP 99 (116)
Q Consensus 85 r~l~~~~HPDk~gs~ 99 (116)
.+..++.|||.|=|.
T Consensus 8 ~kvLKqVhpd~giS~ 22 (89)
T smart00427 8 YKVLKQVHPDTGISS 22 (89)
T ss_pred HHHHHHhCCCccccH
Confidence 567889999997553
No 105
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=34.99 E-value=52 Score=22.87 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITL 90 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~ 90 (116)
..+|.+|.-++||++++.-...+.++.+++...
T Consensus 142 ~g~s~~EIA~~lgis~~tVk~~l~rAl~~~~~~ 174 (178)
T PRK12529 142 DGMKQKDIAQALDIALPTVKKYIHQAYVTCLSL 174 (178)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 456777777777777776666666666666544
No 106
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=34.22 E-value=48 Score=17.82 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 91 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~ 91 (116)
..++..|..+.||++.. .|+...+++....
T Consensus 14 ~~~s~~eia~~l~~s~~----tv~~~~~~~~~~l 43 (57)
T cd06170 14 EGKTNKEIADILGISEK----TVKTHLRNIMRKL 43 (57)
T ss_pred cCCCHHHHHHHHCCCHH----HHHHHHHHHHHHh
Confidence 34788899999998654 4555555555544
No 107
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=33.99 E-value=79 Score=24.72 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=32.7
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Q psy5623 55 GFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNH 92 (116)
Q Consensus 55 ~~~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~H 92 (116)
......|.+|...+-|+++..+.+||...|.-|....|
T Consensus 20 ~~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~ 57 (283)
T COG1072 20 STPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQ 57 (283)
T ss_pred cCccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999999998877654
No 108
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=33.85 E-value=38 Score=18.53 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=18.0
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5623 57 EPKMTKREASLILGVSQSANRMKIKEAHKRI 87 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l 87 (116)
...+|..|.-+.||++.. .|+...++.
T Consensus 18 ~~~~t~~eIa~~lg~s~~----~V~~~~~~a 44 (50)
T PF04545_consen 18 FEGLTLEEIAERLGISRS----TVRRILKRA 44 (50)
T ss_dssp TST-SHHHHHHHHTSCHH----HHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCcHH----HHHHHHHHH
Confidence 457889999999999654 444444443
No 109
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=33.41 E-value=1.3e+02 Score=19.02 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhC
Q psy5623 67 LILGVSQSANRMKIKEAHKRIITLNH 92 (116)
Q Consensus 67 ~iLgl~~~~~~~~ik~~yr~l~~~~H 92 (116)
.+.|++|.+|.+||+.+=.+.+++..
T Consensus 7 ~L~~fePpaT~~EI~aAAlQyVRKvS 32 (78)
T PF10041_consen 7 TLRNFEPPATDEEIRAAALQYVRKVS 32 (78)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46788999999999999887777763
No 110
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=32.92 E-value=29 Score=20.97 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=15.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5623 1 MASTAILTGLGLAAVGYAGRYILKAAPMAS 30 (116)
Q Consensus 1 ma~~~i~~~~~v~~~~~~gra~~~a~~~~~ 30 (116)
||+-+|++.+..++.. +++++.+|++
T Consensus 1 MA~Kl~vialLC~aLv----a~vQ~APQYa 26 (65)
T PF10731_consen 1 MASKLIVIALLCVALV----AIVQSAPQYA 26 (65)
T ss_pred CcchhhHHHHHHHHHH----HHHhcCcccC
Confidence 7887776555444332 2666666665
No 111
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=32.87 E-value=1.4e+02 Score=22.41 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=33.2
Q ss_pred ccccCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q psy5623 50 KYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS 98 (116)
Q Consensus 50 ~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs 98 (116)
.|..|| .-+.++|-.-.|++ .++|.+++..+....+||+...
T Consensus 28 DFCCGG---~~~L~~Aa~~k~l~----~~~i~a~L~~l~~~~~~~~dw~ 69 (221)
T COG2846 28 DFCCGG---KVTLERAAAEKGLD----IDEIEARLNALQQEPTPSKDWA 69 (221)
T ss_pred ceecCC---hHHHHHHHHHcCCC----HHHHHHHHHHHHhccCcccCcc
Confidence 456655 45677888777776 8899999999999999998654
No 112
>KOG3219|consensus
Probab=32.34 E-value=78 Score=23.43 Aligned_cols=29 Identities=24% Similarity=0.139 Sum_probs=22.1
Q ss_pred HHHHHHHhCC---CCCCCHHHHHHHHHHHHHH
Q psy5623 62 KREASLILGV---SQSANRMKIKEAHKRIITL 90 (116)
Q Consensus 62 ~~eA~~iLgl---~~~~~~~~ik~~yr~l~~~ 90 (116)
.+||..|.+. +...-+..|+++||+|-.+
T Consensus 150 VEeAl~V~~~~~e~~PLqP~HIREA~rrL~~q 181 (195)
T KOG3219|consen 150 VEEALDVREEWGESGPLQPKHIREAYRRLKLQ 181 (195)
T ss_pred HHHHHHHHHHhccCCCCCcHHHHHHHHHHHhc
Confidence 3788887654 3346789999999999775
No 113
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.31 E-value=68 Score=22.12 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHhcc
Q psy5623 75 ANRMKIKEAHKRIITLNH-PDRGGSPYLAAKINEAKDLLEQ 114 (116)
Q Consensus 75 ~~~~~ik~~yr~l~~~~H-PDk~gs~~~~~~i~~Ay~~L~~ 114 (116)
.-..++.++|+.++...| |++.. ..++-.+||=...+
T Consensus 48 ~aDa~LN~AY~~ll~~l~~~~~~~---aL~kaQRAWi~fRD 85 (127)
T COG3755 48 AADAELNKAYKALLKRLQDSPRTK---ALQKAQRAWIAFRD 85 (127)
T ss_pred HHHHHHHHHHHHHHHHhccChHHH---HHHHHHHHHHHHhh
Confidence 346789999999999987 66544 57777777765544
No 114
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=32.30 E-value=32 Score=17.90 Aligned_cols=15 Identities=53% Similarity=0.742 Sum_probs=12.3
Q ss_pred CCHHHHHHHhCCCCC
Q psy5623 60 MTKREASLILGVSQS 74 (116)
Q Consensus 60 m~~~eA~~iLgl~~~ 74 (116)
|+..|+.+.||+++.
T Consensus 1 ~s~~e~a~~lgvs~~ 15 (49)
T cd04762 1 LTTKEAAELLGVSPS 15 (49)
T ss_pred CCHHHHHHHHCcCHH
Confidence 577899999999654
No 115
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=30.77 E-value=61 Score=17.25 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITL 90 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~ 90 (116)
..++..|..+.||++.. .|+...+++..+
T Consensus 17 ~g~s~~eia~~l~is~~----tv~~~~~~~~~k 45 (58)
T smart00421 17 EGLTNKEIAERLGISEK----TVKTHLSNIMRK 45 (58)
T ss_pred cCCCHHHHHHHHCCCHH----HHHHHHHHHHHH
Confidence 34688888899998654 444444444333
No 116
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=30.70 E-value=34 Score=18.93 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHhCCCCCC
Q psy5623 57 EPKMTKREASLILGVSQSA 75 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~ 75 (116)
-..||..|.-++||++++.
T Consensus 24 ~~g~s~~eIa~~l~~s~~~ 42 (54)
T PF08281_consen 24 FQGMSYAEIAEILGISEST 42 (54)
T ss_dssp TS---HHHHHHHCTS-HHH
T ss_pred HHCcCHHHHHHHHCcCHHH
Confidence 4568889999999987654
No 117
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.08 E-value=36 Score=18.15 Aligned_cols=30 Identities=37% Similarity=0.429 Sum_probs=19.6
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDR 95 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk 95 (116)
|+..|+.++||+++. .|+ .|.+.-+.. |.+
T Consensus 1 ~~~~e~a~~~gv~~~----tlr-~~~~~g~l~-~~~ 30 (49)
T cd04761 1 YTIGELAKLTGVSPS----TLR-YYERIGLLS-PAR 30 (49)
T ss_pred CcHHHHHHHHCcCHH----HHH-HHHHCCCCC-CCc
Confidence 678899999999765 344 455544443 654
No 118
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=29.89 E-value=1.4e+02 Score=22.64 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 91 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~ 91 (116)
..++.+|--++||++++.-...+.++-++|-...
T Consensus 130 ~g~s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~ 163 (293)
T PRK09636 130 FGVPFDEIASTLGRSPAACRQLASRARKHVRAAR 163 (293)
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 4578889999999988877777777766666643
No 119
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=29.26 E-value=72 Score=20.26 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHH
Q psy5623 73 QSANRMKIKEAHKRI 87 (116)
Q Consensus 73 ~~~~~~~ik~~yr~l 87 (116)
....+..|+++||+|
T Consensus 70 ~Pl~P~HireA~rrl 84 (85)
T cd08048 70 GPLQPRHLREAYRRL 84 (85)
T ss_pred CCCCcHHHHHHHHHh
Confidence 345778899999886
No 120
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=28.84 E-value=81 Score=22.21 Aligned_cols=11 Identities=18% Similarity=0.126 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q psy5623 100 YLAAKINEAKD 110 (116)
Q Consensus 100 ~~~~~i~~Ay~ 110 (116)
..+.++|++|+
T Consensus 94 ~~L~~lN~~Y~ 104 (157)
T TIGR03164 94 ARFTRLNNAYR 104 (157)
T ss_pred HHHHHHHHHHH
Confidence 45666788886
No 121
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=28.57 E-value=66 Score=22.71 Aligned_cols=11 Identities=18% Similarity=-0.067 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q psy5623 100 YLAAKINEAKD 110 (116)
Q Consensus 100 ~~~~~i~~Ay~ 110 (116)
..+.++|++|+
T Consensus 94 ~~L~~lN~~Y~ 104 (158)
T TIGR03180 94 AALLEGNAAYE 104 (158)
T ss_pred HHHHHHHHHHH
Confidence 45677888886
No 122
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=28.45 E-value=51 Score=18.89 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=17.3
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHH
Q psy5623 67 LILGVSQSANRMKIKEAHKRIIT 89 (116)
Q Consensus 67 ~iLgl~~~~~~~~ik~~yr~l~~ 89 (116)
++=|+.|..+++|.|+.-|+=..
T Consensus 3 ~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 3 RIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred ccccCCCCCCHHHHHHHHHHHHH
Confidence 34578888999999988876443
No 123
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=27.35 E-value=44 Score=21.84 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.3
Q ss_pred HhCCCCCCCHHHHHHHHHHHHH
Q psy5623 68 ILGVSQSANRMKIKEAHKRIIT 89 (116)
Q Consensus 68 iLgl~~~~~~~~ik~~yr~l~~ 89 (116)
+|-++++++..+|+++...|+-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF~ 46 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELFG 46 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 5778889999999999999885
No 124
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=27.01 E-value=33 Score=20.30 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=16.4
Q ss_pred HHHHHhCCCCCCCHHHH-HHHHHHHHHHhCCC
Q psy5623 64 EASLILGVSQSANRMKI-KEAHKRIITLNHPD 94 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~i-k~~yr~l~~~~HPD 94 (116)
+.+++||+++ +++ ...........|||
T Consensus 7 ~~~~i~G~~~----~~~~~~~~~~~~~~ihpd 34 (91)
T PF08447_consen 7 NFYEIFGYSP----EEIGKPDFEEWLERIHPD 34 (91)
T ss_dssp HHHHHHTS-H----HHHTCBEHHHHHHHB-TT
T ss_pred HHHHHhCCCH----HHhccCCHHHHHhhcCHH
Confidence 5668888865 344 44456677778886
No 125
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=26.41 E-value=55 Score=18.25 Aligned_cols=22 Identities=0% Similarity=0.086 Sum_probs=16.9
Q ss_pred hCCCCCCCHHHHHHHHHHHHHH
Q psy5623 69 LGVSQSANRMKIKEAHKRIITL 90 (116)
Q Consensus 69 Lgl~~~~~~~~ik~~yr~l~~~ 90 (116)
-||+++.+.++|++.+.+.-..
T Consensus 4 ~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 4 GNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp ESETTTSSHHHHHHHHHTTSTE
T ss_pred cCCCCcCCHHHHHHHHHHhhhc
Confidence 3788889999999888775443
No 126
>PF14007 YtpI: YtpI-like protein
Probab=26.28 E-value=1.2e+02 Score=19.48 Aligned_cols=28 Identities=11% Similarity=-0.158 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5623 5 AILTGLGLAAVGYAGRYILKAAPMASAR 32 (116)
Q Consensus 5 ~i~~~~~v~~~~~~gra~~~a~~~~~~~ 32 (116)
.|+..+.++.+.+-.-++.++|++..|.
T Consensus 60 ~iV~~ifl~lG~~n~~~G~r~y~hy~p~ 87 (89)
T PF14007_consen 60 LIVGAIFLVLGLFNLFAGIRAYRHYRPL 87 (89)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhc
Confidence 3433444444444577899999887753
No 127
>PHA02047 phage lambda Rz1-like protein
Probab=26.20 E-value=2e+02 Score=18.99 Aligned_cols=27 Identities=11% Similarity=-0.090 Sum_probs=14.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5623 1 MASTAILTGLGLAAVGYAGRYILKAAP 27 (116)
Q Consensus 1 ma~~~i~~~~~v~~~~~~gra~~~a~~ 27 (116)
|=-+++++-++|+.+.-....|+.+|+
T Consensus 1 mr~t~~~~~~~v~~~~g~~y~~~~~~r 27 (101)
T PHA02047 1 MRRTIVAILVLVVVALGASYGFVQSYR 27 (101)
T ss_pred CchhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 444555555555444444555666676
No 128
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=25.22 E-value=2.1e+02 Score=18.93 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=35.1
Q ss_pred CHHHHHHHhCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCH-HHH----HHHHHHHHHhcc
Q psy5623 61 TKREASLILGVSQS-----ANRMKIKEAHKRIITLNHPDRGGSP-YLA----AKINEAKDLLEQ 114 (116)
Q Consensus 61 ~~~eA~~iLgl~~~-----~~~~~ik~~yr~l~~~~HPDk~gs~-~~~----~~i~~Ay~~L~~ 114 (116)
+-+|-++.|||+-+ .+.=.|-++|...+...++.-+.++ +.. .-+.+||+....
T Consensus 13 sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dFv~ 76 (105)
T PF03206_consen 13 SAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDFVT 76 (105)
T ss_pred CHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 44777788998775 3556788888888888877544443 222 225677776543
No 129
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=24.81 E-value=47 Score=22.15 Aligned_cols=22 Identities=36% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy5623 5 AILTGLGLAAVGYAGRYILKAA 26 (116)
Q Consensus 5 ~i~~~~~v~~~~~~gra~~~a~ 26 (116)
+|.+|++|..++.++..++++.
T Consensus 6 vl~Iglgv~~~Gg~~Y~~l~~~ 27 (104)
T PF11460_consen 6 VLLIGLGVFLLGGLLYGGLQAA 27 (104)
T ss_pred eeeecHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999875
No 130
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=24.72 E-value=38 Score=18.36 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=14.4
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy5623 59 KMTKREASLILGVSQSANRMKIKEAHKR 86 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~ik~~yr~ 86 (116)
.+|..+..+.||++.. |...+.++|++
T Consensus 17 G~s~~~ia~~lgvs~~-Tv~~w~kr~~~ 43 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRS-TVYRWIKRYRE 43 (50)
T ss_dssp T--HHHHHHHHTS-HH-HHHHHHT----
T ss_pred CCCHHHHHHHHCcCHH-HHHHHHHHccc
Confidence 4677888899998765 35555666653
No 131
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=24.02 E-value=88 Score=17.86 Aligned_cols=18 Identities=50% Similarity=0.726 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy5623 3 STAILTGLGLAAVGYAGR 20 (116)
Q Consensus 3 ~~~i~~~~~v~~~~~~gr 20 (116)
-|.+++|+++...+.++|
T Consensus 26 lP~~~~Gi~Lii~g~v~r 43 (49)
T PF11384_consen 26 LPAILIGIGLIISGGVGR 43 (49)
T ss_pred cHHHHHhHHHHhhhhhhh
Confidence 467788888888887776
No 132
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=23.70 E-value=84 Score=18.20 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=18.3
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRII 88 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~ 88 (116)
|+.+||...||+... .+|+.-|++-
T Consensus 16 lp~~eAA~~Lgv~~T----~LKr~CR~~G 40 (52)
T PF02042_consen 16 LPIKEAAKELGVSVT----TLKRRCRRLG 40 (52)
T ss_pred CCHHHHHHHhCCCHH----HHHHHHHHcC
Confidence 788999999998644 5666666543
No 133
>PF08951 EntA_Immun: Enterocin A Immunity; InterPro: IPR015046 Gram-positive lactobacilli produce bacteriocins to kill closely-related competitor species []. To protect themselves from the bacteriocidal activity of this molecule they co-express an immunity protein (for discussion of this operon see Bacteriocin_IIc PF10439 from PFAM). The immunity protein structure is a soluble, cytoplasmic, antiparallel four alpha-helical globular bundle with a fifth, more flexible and more divergent C-terminal helical hair-pin []. The C-terminal hair-pin recognises the C terminus of the producer bacteriocin and this interaction is sufficient to dis-orient the bacteriocin within the membrane and close up the permeabilising pore that on its own the bacteriocin creates []. These immunity proteins interact in the same way with other bacteriocins, family Bacteriocin_II, PF01721 from PFAM. Since many enterococci can produce more than one bacteriocin it seems likely that the whole operon can be carried on transferable plasmids []. ; PDB: 2BL8_C 2BL7_A 2K19_A 2FU2_A 1TDP_A 2IP6_A.
Probab=23.65 E-value=1.4e+02 Score=17.38 Aligned_cols=24 Identities=29% Similarity=0.178 Sum_probs=12.4
Q ss_pred hCCCCCCCHHHHHHHHHHHHHhcc
Q psy5623 91 NHPDRGGSPYLAAKINEAKDLLEQ 114 (116)
Q Consensus 91 ~HPDk~gs~~~~~~i~~Ay~~L~~ 114 (116)
++||...+.+..+-+..|+..|.+
T Consensus 15 ~~~~~~~~~~lr~iL~~a~~~l~~ 38 (75)
T PF08951_consen 15 NDLDVKINEELRKILLKAKNELEK 38 (75)
T ss_dssp CCHCHHCGHHHHHHHHHHHHHHHT
T ss_pred hcccccCCHHHHHHHHHHHHHHhc
Confidence 445555555555555555555443
No 134
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.57 E-value=4.5e+02 Score=22.48 Aligned_cols=36 Identities=19% Similarity=0.053 Sum_probs=28.2
Q ss_pred CCHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHhCCCC
Q psy5623 60 MTKREASLILGVSQ-SANRMKIKEAHKRIITLNHPDR 95 (116)
Q Consensus 60 m~~~eA~~iLgl~~-~~~~~~ik~~yr~l~~~~HPDk 95 (116)
-+..+|.+-|.-+. +.=.++|++-|+||.....|.+
T Consensus 319 ~~l~~aLe~l~~~nfG~L~~~I~~LYkRL~~gids~~ 355 (527)
T COG1955 319 NTLVEALEALDRHNFGILTEDIRRLYKRLAMGIDSNK 355 (527)
T ss_pred hhHHHHHHHhhhhccccccHHHHHHHHHHHccCCHHH
Confidence 45677877776644 5677899999999999998866
No 135
>CHL00030 rpl23 ribosomal protein L23
Probab=23.36 E-value=70 Score=20.69 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=19.0
Q ss_pred HhCCCCCCCHHHHHHHHHHHHH
Q psy5623 68 ILGVSQSANRMKIKEAHKRIIT 89 (116)
Q Consensus 68 iLgl~~~~~~~~ik~~yr~l~~ 89 (116)
.|-++++++..||+++...++.
T Consensus 23 ~F~V~~~anK~eIK~avE~lf~ 44 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFFG 44 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 4678889999999999999874
No 136
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=23.06 E-value=1e+02 Score=20.65 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy5623 57 EPKMTKREASLILGVSQSANRMKIKEAHKRIIT 89 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~ 89 (116)
-..||.+|.-++||++++.-...+.++-++|-.
T Consensus 120 ~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~ 152 (160)
T PRK09642 120 LEEKSYQEIALQEKIEVKTVEMKLYRARKWIKK 152 (160)
T ss_pred HhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 345666777777777666544444444444433
No 137
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=22.97 E-value=1.7e+02 Score=18.21 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCC
Q psy5623 72 SQSANRMKIKEAHKRIITLNHPDR 95 (116)
Q Consensus 72 ~~~~~~~~ik~~yr~l~~~~HPDk 95 (116)
..+.+++||-.-|++.+...-|+.
T Consensus 32 ~~~I~PEeIv~iH~~~v~~l~~~~ 55 (77)
T PF08673_consen 32 EKDISPEEIVEIHKSAVQELSPSL 55 (77)
T ss_dssp HTT--HHHHHHHHHHHHHHH-TTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcccc
Confidence 456789999999999999998875
No 138
>PLN00158 histone H2B; Provisional
Probab=22.93 E-value=1.1e+02 Score=20.72 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=12.1
Q ss_pred HHHHHHHhCCCCCCCH
Q psy5623 84 HKRIITLNHPDRGGSP 99 (116)
Q Consensus 84 yr~l~~~~HPDk~gs~ 99 (116)
-.+..++.|||.|-|.
T Consensus 33 I~kVLKQVhPd~gIS~ 48 (116)
T PLN00158 33 IYKVLKQVHPDTGISS 48 (116)
T ss_pred HHHHHHHhCCCCCccH
Confidence 3566888999997654
No 139
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=22.77 E-value=1.1e+02 Score=20.55 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=14.1
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5623 59 KMTKREASLILGVSQSANRMKIKEAHKRI 87 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~ik~~yr~l 87 (116)
.|+.+|.-+.||++.++-...+..+.++|
T Consensus 121 ~~s~~eIA~~lgis~~tv~~~l~ra~~~L 149 (159)
T PRK12527 121 GLSHQQIAEHLGISRSLVEKHIVNAMKHC 149 (159)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45555555555555554444444444433
No 140
>PTZ00463 histone H2B; Provisional
Probab=22.53 E-value=1.2e+02 Score=20.66 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=11.8
Q ss_pred HHHHHHHhCCCCCCCH
Q psy5623 84 HKRIITLNHPDRGGSP 99 (116)
Q Consensus 84 yr~l~~~~HPDk~gs~ 99 (116)
-.+.+++.|||.|-|.
T Consensus 34 I~KVLKqVhPd~gIS~ 49 (117)
T PTZ00463 34 IFKVLKQVHPDTGISR 49 (117)
T ss_pred HHHHHHhhCCCCCccH
Confidence 3466778999998664
No 141
>CHL00168 pbsA heme oxygenase; Provisional
Probab=22.34 E-value=2.4e+02 Score=21.28 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHHh
Q psy5623 76 NRMKIKEAHKRIITLN 91 (116)
Q Consensus 76 ~~~~ik~~yr~l~~~~ 91 (116)
+..+.|..||..+...
T Consensus 164 ~~~~fk~~yr~~Ld~l 179 (238)
T CHL00168 164 DDQEFKQIYKAALDNL 179 (238)
T ss_pred cHHHHHHHHHHHHhcC
Confidence 5677888888887755
No 142
>PF05801 DUF840: Lagovirus protein of unknown function (DUF840); InterPro: IPR008558 This family consists of several Lagovirus sequences of unknown function, largely from Oryctolagus cuniculus hemorrhagic disease virus.
Probab=22.33 E-value=1.3e+02 Score=19.77 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy5623 8 TGLGLAAVGYAGRYILKAAPMASARLNEALKA 39 (116)
Q Consensus 8 ~~~~v~~~~~~gra~~~a~~~~~~~~~~~~~~ 39 (116)
+|++++|++++.-+.+|. |..+..+|++.+
T Consensus 5 igl~laga~vlsnallrr--qelqlqkqalen 34 (114)
T PF05801_consen 5 IGLGLAGASVLSNALLRR--QELQLQKQALEN 34 (114)
T ss_pred hccccchHHHHHHHHHHH--HHHHHHHHHHhc
Confidence 588999999999888874 333333444443
No 143
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=21.93 E-value=2.2e+02 Score=22.03 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5623 56 FEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPD 94 (116)
Q Consensus 56 ~~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPD 94 (116)
.--..+..||..++|+.+-.+.++++++ .++.....|.
T Consensus 134 ~vvTPNl~EA~~L~g~~~i~~~~d~~~a-~~~i~~~g~~ 171 (263)
T COG0351 134 TVVTPNLPEAEALSGLPKIKTEEDMKEA-AKLLHELGAK 171 (263)
T ss_pred eEecCCHHHHHHHcCCCccCCHHHHHHH-HHHHHHhCCC
Confidence 3445677999999998555688999999 7777766665
No 144
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.79 E-value=82 Score=19.65 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.3
Q ss_pred HhCCCCCCCHHHHHHHHHHHHH
Q psy5623 68 ILGVSQSANRMKIKEAHKRIIT 89 (116)
Q Consensus 68 iLgl~~~~~~~~ik~~yr~l~~ 89 (116)
.|-++++++..||+++..+++.
T Consensus 18 ~F~V~~~anK~eIK~avE~lf~ 39 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLFD 39 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 4678888999999999988864
No 145
>PHA01083 hypothetical protein
Probab=21.62 E-value=3e+02 Score=19.48 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=30.4
Q ss_pred ccCCCCCCCCHHHHHHH---hCCCCC----------CCHHHHHHHHHHHHHHhC
Q psy5623 52 YKGGFEPKMTKREASLI---LGVSQS----------ANRMKIKEAHKRIITLNH 92 (116)
Q Consensus 52 ~~~~~~~~m~~~eA~~i---Lgl~~~----------~~~~~ik~~yr~l~~~~H 92 (116)
++.|.+..++.++|..+ +|+++. ....++++.|..+.++..
T Consensus 36 ~R~G~r~~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~kalWesIaKKln 89 (149)
T PHA01083 36 MRTGVRTYISDEEAIFLAESAGIDPEIALLGCHADRNENPRAKAIWESIAKKQN 89 (149)
T ss_pred HHcCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 45566777888887765 888874 345678899999998873
No 146
>PF14893 PNMA: PNMA
Probab=21.53 E-value=80 Score=25.14 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy5623 59 KMTKREASLILGVSQSANRMKIKEAHKR 86 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~ik~~yr~ 86 (116)
.++.+.+..|+|++++++.+||.+.-+-
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 3566788999999999999999887543
No 147
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=21.43 E-value=86 Score=20.54 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=25.1
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPD 94 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPD 94 (116)
..+|..+||+++ ....+.|=.++|++.+..-|-
T Consensus 18 gaDEil~IL~lp-~s~l~~iP~~~kk~w~dl~~~ 50 (97)
T PF04512_consen 18 GADEILSILRLP-CSALQSIPRSHKKLWKDLEPC 50 (97)
T ss_pred cHHHHHHHhCCC-HHHHHHcCHHHHHHHHHhccc
Confidence 458999999999 445667777777777777663
No 148
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=21.30 E-value=1.1e+02 Score=20.76 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIIT 89 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~ 89 (116)
..++.+|.-++||++++.-...+.++-++|-.
T Consensus 133 ~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 164 (173)
T PRK09645 133 RGWSTAQIAADLGIPEGTVKSRLHYALRALRL 164 (173)
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35677777777777776555555555555444
No 149
>KOG0177|consensus
Probab=21.28 E-value=72 Score=23.63 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHHhC
Q psy5623 55 GFEPKMTKREASLILG 70 (116)
Q Consensus 55 ~~~~~m~~~eA~~iLg 70 (116)
-..+.||.+||++++.
T Consensus 146 ~Y~pdmt~eea~~lmk 161 (200)
T KOG0177|consen 146 YYKPDMTIEEALDLMK 161 (200)
T ss_pred hhCCCCCHHHHHHHHH
Confidence 3578899999999874
No 150
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=21.14 E-value=1.5e+02 Score=18.10 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy5623 94 DRGGSPYLAAKINEAKDLL 112 (116)
Q Consensus 94 Dk~gs~~~~~~i~~Ay~~L 112 (116)
|+|++|+.++.....++.+
T Consensus 35 ~~G~~P~eyQq~q~~~~Ai 53 (68)
T PF08988_consen 35 DRGGTPQEYQQLQQQYDAI 53 (68)
T ss_dssp TCTSSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 7899998887766555544
No 151
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=20.91 E-value=3.8e+02 Score=20.27 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Q psy5623 57 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNH 92 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~H 92 (116)
-..|+.+|.-++||++++.-...+.++-++|-....
T Consensus 156 ~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~ 191 (324)
T TIGR02960 156 VLGWRAAETAELLGTSTASVNSALQRARATLDEVGP 191 (324)
T ss_pred HhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 356888999999999988766666666666655444
No 152
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=20.89 E-value=2.4e+02 Score=20.87 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=20.2
Q ss_pred HHHHHhCCCCC-----CCHHHHHHHHHHHHHHhCCC
Q psy5623 64 EASLILGVSQS-----ANRMKIKEAHKRIITLNHPD 94 (116)
Q Consensus 64 eA~~iLgl~~~-----~~~~~ik~~yr~l~~~~HPD 94 (116)
+-.+.+|.+++ .|++.|.++|+.++.=++-|
T Consensus 21 ~lL~~~Gedp~reGL~~TP~RVak~~~e~f~G~~~~ 56 (195)
T COG0302 21 ELLEALGEDPDREGLLETPKRVAKAYRELFSGYDED 56 (195)
T ss_pred HHHHHhCCCCCchhhhhhHHHHHHHHHHHHhhhCCC
Confidence 34455677664 37777888887777766433
No 153
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=20.87 E-value=91 Score=14.78 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=5.5
Q ss_pred HHHHHHHHH
Q psy5623 5 AILTGLGLA 13 (116)
Q Consensus 5 ~i~~~~~v~ 13 (116)
||++|+++.
T Consensus 7 Pi~VGvvl~ 15 (21)
T PF13955_consen 7 PIVVGVVLT 15 (21)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 556676654
No 154
>smart00150 SPEC Spectrin repeats.
Probab=20.77 E-value=1.4e+02 Score=17.63 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q psy5623 75 ANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQ 114 (116)
Q Consensus 75 ~~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 114 (116)
...+.|...-+.|....||+...-......|+.-|+.|..
T Consensus 52 ~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~ 91 (101)
T smart00150 52 ERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKE 91 (101)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3557777888888888777654444566777777776653
No 155
>PRK12511 RNA polymerase sigma factor; Provisional
Probab=20.76 E-value=1.6e+02 Score=20.58 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHhCCCCCCCH---HHHHHHHHHHHHHhCCCCC
Q psy5623 57 EPKMTKREASLILGVSQSANR---MKIKEAHKRIITLNHPDRG 96 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~~~---~~ik~~yr~l~~~~HPDk~ 96 (116)
-..|+.+|.-++||++.+.-. ...++.-++++...-|+.|
T Consensus 125 ~eg~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~~~~~~~~~~ 167 (182)
T PRK12511 125 IEGLSYQEAAAVLGIPIGTLMSRIGRARAALRAFEEGTGPARG 167 (182)
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 346888888888998886433 3334444555555667664
No 156
>PRK05439 pantothenate kinase; Provisional
Probab=20.65 E-value=2.1e+02 Score=22.51 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5623 55 GFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLN 91 (116)
Q Consensus 55 ~~~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~ 91 (116)
....++|.+|-.++-|+....+.+||..-|.-|++..
T Consensus 24 ~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli 60 (311)
T PRK05439 24 STPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLL 60 (311)
T ss_pred cCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999997665543
No 157
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=20.65 E-value=1.9e+02 Score=22.24 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy5623 56 FEPKMTKREASLILGVSQSANRMKIKEAHKRIIT 89 (116)
Q Consensus 56 ~~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~ 89 (116)
+-..|+.+|.-++||++++.-...+.++-++|-.
T Consensus 166 ~~~g~s~~EIA~~lgis~~tVk~~l~RAr~~Lr~ 199 (339)
T PRK08241 166 DVLGWSAAEVAELLDTSVAAVNSALQRARATLAE 199 (339)
T ss_pred HhhCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 3456888999999999888766666666666655
No 158
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=20.32 E-value=3e+02 Score=21.07 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAK 109 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay 109 (116)
..++..|.-++||++++.-...+.++-++|-. ..|....++....++-++|
T Consensus 133 ~g~s~~EIA~~Lgis~~tVr~~l~RAr~~Lr~-~~~~~~~~~~~~~~~~~~f 183 (290)
T PRK09635 133 FGLPYQQIATTIGSQASTCRQLAHRARRKINE-SRIAASVEPAQHRVVTRAF 183 (290)
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh-hCCCCCCChHHHHHHHHHH
Confidence 45777888888888877656666555555544 3343233333334444443
Done!