Query psy5623
Match_columns 116
No_of_seqs 246 out of 1502
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 22:25:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guz_A Mitochondrial import in 99.9 5.2E-24 1.8E-28 132.1 7.4 66 50-115 1-67 (71)
2 2guz_B Mitochondrial import in 99.9 2E-23 7E-28 127.6 6.4 55 60-114 1-58 (65)
3 1faf_A Large T antigen; J doma 99.8 6.5E-19 2.2E-23 111.1 5.5 56 60-115 8-65 (79)
4 1iur_A KIAA0730 protein; DNAJ 99.7 2.1E-17 7.3E-22 106.2 7.0 59 56-114 9-72 (88)
5 2yua_A Williams-beuren syndrom 99.6 3.9E-16 1.3E-20 101.8 7.3 60 56-115 10-73 (99)
6 2ys8_A RAB-related GTP-binding 99.6 2.3E-16 8E-21 101.4 5.8 53 63-115 27-82 (90)
7 2ctr_A DNAJ homolog subfamily 99.6 3E-16 1E-20 100.3 6.1 55 61-115 5-62 (88)
8 2dn9_A DNAJ homolog subfamily 99.6 3.3E-16 1.1E-20 98.0 6.0 56 60-115 4-63 (79)
9 2o37_A Protein SIS1; HSP40, J- 99.6 6.7E-16 2.3E-20 99.5 6.5 55 61-115 6-61 (92)
10 2ej7_A HCG3 gene; HCG3 protein 99.6 5.8E-16 2E-20 97.5 6.0 53 63-115 9-66 (82)
11 2ctp_A DNAJ homolog subfamily 99.6 3.5E-16 1.2E-20 97.8 4.2 56 60-115 4-62 (78)
12 2och_A Hypothetical protein DN 99.6 1.8E-15 6.3E-20 93.4 7.3 53 63-115 8-61 (73)
13 2ctw_A DNAJ homolog subfamily 99.6 1.5E-15 5.2E-20 100.7 6.5 59 57-115 11-73 (109)
14 1gh6_A Large T antigen; tumor 99.6 3.4E-16 1.2E-20 105.0 3.1 54 62-115 7-62 (114)
15 1wjz_A 1700030A21RIK protein; 99.6 4.1E-16 1.4E-20 100.5 2.4 58 58-115 11-78 (94)
16 2dmx_A DNAJ homolog subfamily 99.6 1.9E-15 6.4E-20 97.2 5.4 53 63-115 9-66 (92)
17 2cug_A Mkiaa0962 protein; DNAJ 99.6 3E-15 1E-19 95.7 6.0 54 62-115 16-72 (88)
18 1hdj_A Human HSP40, HDJ-1; mol 99.6 4.1E-15 1.4E-19 92.6 5.8 52 64-115 4-58 (77)
19 2ctq_A DNAJ homolog subfamily 99.6 3.2E-15 1.1E-19 99.5 5.6 56 60-115 17-76 (112)
20 2lgw_A DNAJ homolog subfamily 99.5 1.6E-14 5.5E-19 94.4 7.1 52 64-115 3-59 (99)
21 2pf4_E Small T antigen; PP2A, 99.5 1.3E-15 4.3E-20 108.9 1.0 54 62-115 10-65 (174)
22 2qsa_A DNAJ homolog DNJ-2; J-d 99.5 8.1E-15 2.8E-19 96.9 4.7 53 63-115 15-75 (109)
23 2l6l_A DNAJ homolog subfamily 99.5 1.2E-14 4.3E-19 101.3 5.6 57 59-115 6-72 (155)
24 1bq0_A DNAJ, HSP40; chaperone, 99.5 3.4E-15 1.2E-19 97.9 1.1 52 64-115 4-59 (103)
25 2qwo_B Putative tyrosine-prote 99.5 4.1E-15 1.4E-19 96.3 1.4 49 66-114 36-91 (92)
26 3apq_A DNAJ homolog subfamily 99.4 1.7E-13 5.9E-18 98.1 4.7 52 64-115 3-58 (210)
27 3lz8_A Putative chaperone DNAJ 99.4 2.5E-14 8.6E-19 110.8 0.0 59 57-115 22-83 (329)
28 3ag7_A Putative uncharacterize 99.4 3.8E-14 1.3E-18 93.8 0.3 51 64-115 42-103 (106)
29 1fpo_A HSC20, chaperone protei 99.4 4.3E-13 1.5E-17 95.3 4.9 52 64-115 2-64 (171)
30 3hho_A CO-chaperone protein HS 99.3 1.1E-12 3.8E-17 93.4 5.1 52 64-115 5-67 (174)
31 3bvo_A CO-chaperone protein HS 99.3 1.6E-12 5.5E-17 94.9 4.7 59 57-115 37-106 (207)
32 1n4c_A Auxilin; four helix bun 99.3 4.6E-13 1.6E-17 96.2 1.4 52 64-115 118-176 (182)
33 3uo3_A J-type CO-chaperone JAC 99.1 8.3E-12 2.8E-16 89.5 1.7 52 64-115 12-71 (181)
34 3apo_A DNAJ homolog subfamily 99.1 1.6E-11 5.5E-16 102.4 0.3 57 59-115 17-77 (780)
35 2y4t_A DNAJ homolog subfamily 98.1 2E-06 6.8E-11 65.0 3.9 51 65-115 384-441 (450)
36 1ug2_A 2610100B20RIK gene prod 55.5 6.3 0.00022 24.9 1.9 21 75-95 68-88 (95)
37 2pzi_A Probable serine/threoni 52.3 9.5 0.00032 31.0 3.0 43 65-111 631-675 (681)
38 2i8b_A Minor nucleoprotein VP3 48.7 9.2 0.00031 25.6 1.9 20 77-100 84-103 (152)
39 2ket_A Cathelicidin-6; antimic 42.0 26 0.00091 16.5 2.5 17 78-94 4-20 (27)
40 2lr8_A CAsp8-associated protei 46.8 5.8 0.0002 23.7 0.0 22 74-95 47-68 (70)
41 1xsv_A Hypothetical UPF0122 pr 38.3 26 0.00089 22.0 2.9 55 57-113 39-93 (113)
42 2zfd_A Calcineurin B-like prot 34.8 1E+02 0.0035 20.7 6.0 49 57-105 136-191 (226)
43 2ehb_A Calcineurin B-like prot 34.6 91 0.0031 20.3 5.4 48 58-105 126-180 (207)
44 1bh9_B TAFII28; histone fold, 32.4 81 0.0028 19.3 4.4 18 73-90 68-85 (89)
45 2jpc_A SSRB; DNA binding prote 31.9 23 0.00077 19.0 1.6 29 59-91 13-41 (61)
46 1qqr_A Streptokinase domain B; 30.7 32 0.0011 23.1 2.4 28 67-94 36-63 (138)
47 1ku3_A Sigma factor SIGA; heli 30.7 37 0.0013 19.0 2.5 31 58-88 29-59 (73)
48 1tty_A Sigma-A, RNA polymerase 27.9 43 0.0015 19.6 2.5 31 58-88 37-67 (87)
49 2cqq_A RSGI RUH-037, DNAJ homo 27.7 51 0.0018 19.3 2.8 22 75-96 43-64 (72)
50 1je8_A Nitrate/nitrite respons 27.7 29 0.001 20.2 1.7 30 58-91 35-64 (82)
51 3v7o_A Minor nucleoprotein VP3 27.6 31 0.0011 25.0 2.0 20 77-100 159-178 (227)
52 4aj5_K Spindle and kinetochore 27.1 77 0.0026 20.8 3.7 39 74-112 18-62 (123)
53 2p7v_B Sigma-70, RNA polymeras 26.8 36 0.0012 18.8 1.9 30 58-87 24-53 (68)
54 3hug_A RNA polymerase sigma fa 26.6 47 0.0016 19.5 2.5 32 57-88 51-82 (92)
55 2lxi_A RNA-binding protein 10; 26.2 53 0.0018 19.2 2.7 19 70-88 8-26 (91)
56 2o8x_A Probable RNA polymerase 25.9 40 0.0014 18.3 2.0 32 58-89 30-61 (70)
57 3ll8_B Calcineurin subunit B t 25.8 1.2E+02 0.004 18.4 5.6 49 57-105 89-141 (155)
58 2ast_A S-phase kinase-associat 25.4 68 0.0023 21.1 3.4 22 59-80 128-149 (159)
59 3c57_A Two component transcrip 25.3 43 0.0015 20.0 2.2 30 58-87 41-70 (95)
60 1s7o_A Hypothetical UPF0122 pr 25.3 61 0.0021 20.3 3.0 53 58-112 37-89 (113)
61 1fse_A GERE; helix-turn-helix 24.4 52 0.0018 18.0 2.3 30 58-91 25-54 (74)
62 3v7d_A Suppressor of kinetocho 24.0 63 0.0021 21.8 3.0 22 59-80 135-156 (169)
63 2p1m_A SKP1-like protein 1A; F 23.9 1.1E+02 0.0036 20.3 4.2 21 59-79 127-147 (160)
64 1yx7_A Calsensin, LAN3-6 antig 23.5 99 0.0034 16.8 4.5 48 57-104 21-73 (83)
65 1x3u_A Transcriptional regulat 23.4 41 0.0014 18.8 1.7 30 58-91 30-59 (79)
66 2o70_A OHCU decarboxylase; URI 23.2 62 0.0021 22.1 2.9 11 100-110 102-112 (174)
67 1r4v_A Hypothetical protein AQ 23.1 1.1E+02 0.0039 21.1 4.2 30 82-111 140-169 (171)
68 3o7i_A OHCU decarboxylase; lya 22.7 59 0.002 22.7 2.7 12 100-111 123-134 (189)
69 2aze_C Retinoblastoma-associat 22.7 36 0.0012 18.3 1.2 14 96-109 11-24 (46)
70 1wwi_A Hypothetical protein TT 21.8 1.5E+02 0.0052 20.0 4.5 30 83-112 117-147 (148)
71 1hkq_A REPA, replication prote 21.6 29 0.00098 22.4 0.8 33 58-90 46-78 (132)
72 1iqt_A AUF1, heterogeneous nuc 21.5 79 0.0027 17.1 2.7 18 70-87 6-23 (75)
73 1tzy_B Histone H2B; histone-fo 21.2 60 0.0021 21.4 2.3 16 84-99 42-57 (126)
74 1p4w_A RCSB; solution structur 21.1 59 0.002 19.9 2.2 29 59-91 49-77 (99)
75 2nqb_D Histone H2B; nucleosome 21.0 61 0.0021 21.3 2.3 16 84-99 39-54 (123)
76 3t72_q RNA polymerase sigma fa 20.9 73 0.0025 19.6 2.6 34 58-91 38-71 (99)
77 3hhw_A Phosphoprotein; protein 20.4 40 0.0014 20.6 1.2 34 50-84 52-85 (87)
78 2lfw_A PHYR sigma-like domain; 20.0 92 0.0031 20.0 3.1 38 55-92 105-142 (157)
No 1
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.2e-24 Score=132.08 Aligned_cols=66 Identities=53% Similarity=0.960 Sum_probs=63.1
Q ss_pred ccccCCCCCCCCHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccC
Q psy5623 50 KYYKGGFEPKMTKREASLILGVSQ-SANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 50 ~~~~~~~~~~m~~~eA~~iLgl~~-~~~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~ 115 (116)
.||.++|...|+.+++|+||||++ +++.++|+++||+|++++|||++|+++.|++|++||++|.++
T Consensus 1 ~~~~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 1 GFLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKR 67 (71)
T ss_dssp CCCCSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 378899999999999999999999 799999999999999999999999999999999999999874
No 2
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2e-23 Score=127.64 Aligned_cols=55 Identities=33% Similarity=0.467 Sum_probs=53.4
Q ss_pred CCHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q psy5623 60 MTKREASLILGVSQS---ANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQ 114 (116)
Q Consensus 60 m~~~eA~~iLgl~~~---~~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 114 (116)
||.+||++||||+++ ++.++|+++||+|+..||||+|||+|++++||+|+++|..
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999 8999999999999999999999999999999999999975
No 3
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.76 E-value=6.5e-19 Score=111.13 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=52.7
Q ss_pred CCHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccC
Q psy5623 60 MTKREASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 60 m~~~eA~~iLgl~~~--~~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~ 115 (116)
.+..++|+||||+++ ++.++||++||+|++++|||++|+.+.|++|++||++|.+.
T Consensus 8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~ 65 (79)
T 1faf_A 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTE 65 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhH
Confidence 456789999999999 99999999999999999999999999999999999999863
No 4
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.71 E-value=2.1e-17 Score=106.24 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcc
Q psy5623 56 FEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQ 114 (116)
Q Consensus 56 ~~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~ 114 (116)
...+++..++|+||||+++++.+|||++||+|++++|||++++ .+.|++|++||++|.+
T Consensus 9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~ 72 (88)
T 1iur_A 9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK 72 (88)
T ss_dssp CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999999999999999875 4899999999999986
No 5
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=101.84 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 56 FEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 56 ~~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
....|+..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 10 ~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~ 73 (99)
T 2yua_A 10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSA 73 (99)
T ss_dssp CCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSH
T ss_pred CCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 4567888999999999999999999999999999999999864 58999999999999874
No 6
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=101.41 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=49.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRG---GSPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~---gs~~~~~~i~~Ay~~L~~~ 115 (116)
.++|+||||+++++.++||++||+|++++|||++ +..+.|++|++||++|.+.
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~ 82 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKN 82 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCc
Confidence 4678999999999999999999999999999997 5679999999999999864
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=100.32 Aligned_cols=55 Identities=31% Similarity=0.373 Sum_probs=50.1
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
+..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~ 62 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDA 62 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCH
Confidence 34568899999999999999999999999999999886 47899999999999875
No 8
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=97.99 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=50.1
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
++..++|+||||+++++.++|+++||+|++.+|||++++ .+.|++|++||++|.+.
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 63 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 344568899999999999999999999999999999764 58999999999999874
No 9
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.7e-16 Score=99.52 Aligned_cols=55 Identities=29% Similarity=0.408 Sum_probs=50.8
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhccC
Q psy5623 61 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GSPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 61 ~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~-gs~~~~~~i~~Ay~~L~~~ 115 (116)
...++|+||||+++++.++|+++||+|++++|||++ ++.+.|++|++||++|.+.
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~ 61 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDP 61 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCH
Confidence 346899999999999999999999999999999996 6789999999999999874
No 10
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.8e-16 Score=97.51 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=48.7
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~ 115 (116)
.++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~ 66 (82)
T 2ej7_A 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDA 66 (82)
T ss_dssp CCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSST
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCH
Confidence 468899999999999999999999999999999875 36899999999999875
No 11
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-16 Score=97.78 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=50.2
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
++..++|+||||+++++.++|+++||+|++.+|||++++ .+.|++|++||++|.+.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~ 62 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNP 62 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSH
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCH
Confidence 344578899999999999999999999999999999854 58999999999999874
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.61 E-value=1.8e-15 Score=93.42 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=48.8
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-~~~~~~i~~Ay~~L~~~ 115 (116)
.++|+||||+++++.++|+++||+|++.+|||++++ .+.|++|++||++|.++
T Consensus 8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~ 61 (73)
T 2och_A 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDE 61 (73)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCH
Confidence 367899999999999999999999999999999764 79999999999999874
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=1.5e-15 Score=100.70 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 57 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
...++..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 11 ~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~ 73 (109)
T 2ctw_A 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDA 73 (109)
T ss_dssp CTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred ccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCH
Confidence 345556789999999999999999999999999999999875 57899999999999874
No 14
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.59 E-value=3.4e-16 Score=104.99 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=50.5
Q ss_pred HHHHHHHhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccC
Q psy5623 62 KREASLILGVSQSANR--MKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 62 ~~eA~~iLgl~~~~~~--~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~ 115 (116)
..++|+||||+++++. ++||++||+|++++|||++++.+.|++|++||++|.+.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~ 62 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDG 62 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHH
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCH
Confidence 3578899999999988 99999999999999999999999999999999999864
No 15
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.58 E-value=4.1e-16 Score=100.46 Aligned_cols=58 Identities=28% Similarity=0.374 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHHhccC
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG----------SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g----------s~~~~~~i~~Ay~~L~~~ 115 (116)
..|+..++|+||||+++++.++||++||+|++++|||++. ..+.|++|++||++|.+.
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~ 78 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCH
Confidence 4567789999999999999999999999999999999964 247999999999999876
No 16
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=97.21 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=48.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~ 115 (116)
.++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~ 66 (92)
T 2dmx_A 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDS 66 (92)
T ss_dssp CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSH
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCH
Confidence 467899999999999999999999999999999765 47899999999999874
No 17
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=3e-15 Score=95.65 Aligned_cols=54 Identities=28% Similarity=0.398 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhccC
Q psy5623 62 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 62 ~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
..++|+||||+++++.++||++||+|++++|||+++ ..+.|++|++||++|.++
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~ 72 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNE 72 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCH
Confidence 357899999999999999999999999999999975 458999999999999874
No 18
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.56 E-value=4.1e-15 Score=92.62 Aligned_cols=52 Identities=29% Similarity=0.359 Sum_probs=47.5
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.++|+++||+|++.+|||+++ +.+.|++|++||++|.++
T Consensus 4 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~ 58 (77)
T 1hdj_A 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDP 58 (77)
T ss_dssp CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCH
Confidence 3579999999999999999999999999999975 468999999999999874
No 19
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.2e-15 Score=99.50 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=51.0
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 60 m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
+...+.|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~ 76 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNE 76 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCH
Confidence 445789999999999999999999999999999999874 68999999999999874
No 20
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=94.38 Aligned_cols=52 Identities=29% Similarity=0.298 Sum_probs=47.5
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 3 d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~ 59 (99)
T 2lgw_A 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDK 59 (99)
T ss_dssp CHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCH
Confidence 46899999999999999999999999999999875 37899999999999874
No 21
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.52 E-value=1.3e-15 Score=108.91 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccC
Q psy5623 62 KREASLILGVSQSAN--RMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 62 ~~eA~~iLgl~~~~~--~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~ 115 (116)
..++|+||||+++++ .++||++||++++++|||++|+++.|++|++||++|.++
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp 65 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDG 65 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHH
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCH
Confidence 468999999999988 699999999999999999999999999999999999874
No 22
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.52 E-value=8.1e-15 Score=96.94 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=49.0
Q ss_pred HHHHHHhCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhccC
Q psy5623 63 REASLILGVSQSA-NRMKIKEAHKRIITLNHPDRGGS-------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 63 ~eA~~iLgl~~~~-~~~~ik~~yr~l~~~~HPDk~gs-------~~~~~~i~~Ay~~L~~~ 115 (116)
.++|+||||++++ +.++||++||+|++.+|||++++ .+.|++|++||++|.++
T Consensus 15 ~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~ 75 (109)
T 2qsa_A 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75 (109)
T ss_dssp SCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCH
Confidence 5689999999999 99999999999999999999876 47899999999999874
No 23
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=101.35 Aligned_cols=57 Identities=28% Similarity=0.421 Sum_probs=50.9
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHHhccC
Q psy5623 59 KMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----------~~~~~~i~~Ay~~L~~~ 115 (116)
.|+..+.|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|+++
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp 72 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCH
Confidence 4556789999999999999999999999999999999653 27899999999999874
No 24
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.49 E-value=3.4e-15 Score=97.91 Aligned_cols=52 Identities=37% Similarity=0.468 Sum_probs=47.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.++
T Consensus 4 ~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~ 59 (103)
T 1bq0_A 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59 (103)
T ss_dssp CSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCS
T ss_pred CHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCH
Confidence 35699999999999999999999999999999764 47899999999999875
No 25
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.49 E-value=4.1e-15 Score=96.29 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=44.6
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcc
Q psy5623 66 SLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-------PYLAAKINEAKDLLEQ 114 (116)
Q Consensus 66 ~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-------~~~~~~i~~Ay~~L~~ 114 (116)
|++|||++.++.++||++||++++++|||++++ ...|+.|++||++|.+
T Consensus 36 y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999642 3589999999999986
No 26
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.40 E-value=1.7e-13 Score=98.14 Aligned_cols=52 Identities=31% Similarity=0.400 Sum_probs=47.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGG----SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g----s~~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.++||++||+|++++|||+++ ..+.|++|++||++|.++
T Consensus 3 ~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~ 58 (210)
T 3apq_A 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDE 58 (210)
T ss_dssp CHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCH
Confidence 4689999999999999999999999999999975 247899999999999874
No 27
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.40 E-value=2.5e-14 Score=110.81 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhccC
Q psy5623 57 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~ 115 (116)
...|+..++|+||||+++++.+|||++||+|++++|||++++ .+.|++|++||++|++.
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~ 83 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDE 83 (329)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhh
Confidence 456888999999999999999999999999999999999754 58899999999999875
No 28
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.38 E-value=3.8e-14 Score=93.81 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=44.5
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----C-------HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGG----S-------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~g----s-------~~~~~~i~~Ay~~L~~~ 115 (116)
+.|.|||++. ++.++||++||++++++||||++ + .+.|++|++||++|++.
T Consensus 42 d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~ 103 (106)
T 3ag7_A 42 GWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103 (106)
T ss_dssp CCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCc
Confidence 3458999986 99999999999999999999942 3 57899999999999875
No 29
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.37 E-value=4.3e-13 Score=95.30 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=46.2
Q ss_pred HHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSA--NRMKIKEAHKRIITLNHPDRGGS--P-------YLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~--~~~~ik~~yr~l~~~~HPDk~gs--~-------~~~~~i~~Ay~~L~~~ 115 (116)
..|+||||++++ |.++|+++||+|++.+|||++++ . ..|++||+||++|+++
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp 64 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHP 64 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 468999999998 99999999999999999999643 2 5899999999999874
No 30
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.33 E-value=1.1e-12 Score=93.40 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=45.9
Q ss_pred HHHHHhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSAN--RMKIKEAHKRIITLNHPDRGGS---------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~--~~~ik~~yr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~ 115 (116)
..|+||||+++++ .++|+++||+|++.+|||++++ ...|.+|++||++|+++
T Consensus 5 d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp 67 (174)
T 3hho_A 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDP 67 (174)
T ss_dssp CHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 4679999999876 9999999999999999999642 26899999999999874
No 31
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=94.94 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhccC
Q psy5623 57 EPKMTKREASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGGS---------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~--~~~~~ik~~yr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~ 115 (116)
.+.....+.|+||||+++ ++.++||++||+|.+++|||++++ ...|++||+||++|+++
T Consensus 37 q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp 106 (207)
T 3bvo_A 37 QAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAP 106 (207)
T ss_dssp CCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 333334578999999986 789999999999999999999652 24689999999999874
No 32
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.29 E-value=4.6e-13 Score=96.20 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=46.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhccC
Q psy5623 64 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-------PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs-------~~~~~~i~~Ay~~L~~~ 115 (116)
+.|+||||+++++.++||++||+|++.+|||++++ .+.|++|++||++|.+.
T Consensus 118 d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~ 176 (182)
T 1n4c_A 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 176 (182)
T ss_dssp CCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCH
Confidence 45799999999999999999999999999999532 36899999999999864
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.14 E-value=8.3e-12 Score=89.47 Aligned_cols=52 Identities=12% Similarity=0.268 Sum_probs=45.5
Q ss_pred HHHHHh------CCCC-CCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhccC
Q psy5623 64 EASLIL------GVSQ-SANRMKIKEAHKRIITLNHPDRGG-SPYLAAKINEAKDLLEQS 115 (116)
Q Consensus 64 eA~~iL------gl~~-~~~~~~ik~~yr~l~~~~HPDk~g-s~~~~~~i~~Ay~~L~~~ 115 (116)
..|+|| |+++ ++|.++||++||+|++++|||+++ +.+.|.+|++||++|.++
T Consensus 12 d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp 71 (181)
T 3uo3_A 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDP 71 (181)
T ss_dssp CTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSH
T ss_pred CHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcCh
Confidence 345899 4655 799999999999999999999977 678999999999999874
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.06 E-value=1.6e-11 Score=102.43 Aligned_cols=57 Identities=28% Similarity=0.357 Sum_probs=30.7
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhccC
Q psy5623 59 KMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 115 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~ 115 (116)
.....+.|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.++
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~ 77 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDE 77 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcCh
Confidence 3444678999999999999999999999999999999753 47899999999999874
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.10 E-value=2e-06 Score=64.95 Aligned_cols=51 Identities=27% Similarity=0.328 Sum_probs=45.0
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhccC
Q psy5623 65 ASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-------YLAAKINEAKDLLEQS 115 (116)
Q Consensus 65 A~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~ 115 (116)
.|.+||+...++.+++++.|+++.+.+|||+..++ ..|++|++||++|.+.
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 35678888888999999999999999999998764 4899999999999875
No 36
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=55.50 E-value=6.3 Score=24.86 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCC
Q psy5623 75 ANRMKIKEAHKRIITLNHPDR 95 (116)
Q Consensus 75 ~~~~~ik~~yr~l~~~~HPDk 95 (116)
-+.++|+.+|+.|++.+|-.+
T Consensus 68 ks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 68 KTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999998554
No 37
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=52.27 E-value=9.5 Score=30.98 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy5623 65 ASLILGVSQSANR--MKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDL 111 (116)
Q Consensus 65 A~~iLgl~~~~~~--~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~ 111 (116)
++.+||++.+... .+|+++||+|++..++| .+.+.-|..|+.+
T Consensus 631 ~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 631 TNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp SSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred CcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 3468888655433 67999999999976544 4677777777654
No 38
>2i8b_A Minor nucleoprotein VP30; VP30 ebola virus protein, transcription, RNA binding, viral; HET: MSE; 2.00A {Zaire ebolavirus}
Probab=48.70 E-value=9.2 Score=25.62 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCHH
Q psy5623 77 RMKIKEAHKRIITLNHPDRGGSPY 100 (116)
Q Consensus 77 ~~~ik~~yr~l~~~~HPDk~gs~~ 100 (116)
.+-|++-|.++ |.||||+++
T Consensus 84 ~~~vlevYqrl----HsDKGG~FE 103 (152)
T 2i8b_A 84 AEPVLEVYQRL----HSDKGGSFE 103 (152)
T ss_dssp HHHHHHHHHHH----HTCSSSHHH
T ss_pred chHHHHHHHHH----hcccCccHH
Confidence 45688888876 889999885
No 39
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=41.95 E-value=26 Score=16.47 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhCCC
Q psy5623 78 MKIKEAHKRIITLNHPD 94 (116)
Q Consensus 78 ~~ik~~yr~l~~~~HPD 94 (116)
...++.|++|+++..|-
T Consensus 4 krfrkkfkklfkklspv 20 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPV 20 (27)
T ss_dssp HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 46788899999988874
No 40
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=46.81 E-value=5.8 Score=23.69 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q psy5623 74 SANRMKIKEAHKRIITLNHPDR 95 (116)
Q Consensus 74 ~~~~~~ik~~yr~l~~~~HPDk 95 (116)
+-++++|..+|+.|+..+|-.|
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 3578899999999999988654
No 41
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=38.33 E-value=26 Score=21.99 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q psy5623 57 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLE 113 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~ 113 (116)
-..+|..|.-+.||++++.-...+.++.++|-.... ..+-...++++...++-|.
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~--~~~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK--KLELYQKFEQRREIYDEMK 93 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH--HHhHHhHHHHHHHHHHHHH
Confidence 345899999999999887655555666555544432 1244566677766666554
No 42
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=34.76 E-value=1e+02 Score=20.67 Aligned_cols=49 Identities=6% Similarity=0.085 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHh-----CCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHH
Q psy5623 57 EPKMTKREASLIL-----GVSQSANRMKIKEAHKRIITLNHPDRGG--SPYLAAKI 105 (116)
Q Consensus 57 ~~~m~~~eA~~iL-----gl~~~~~~~~ik~~yr~l~~~~HPDk~g--s~~~~~~i 105 (116)
.+.++.+|-..+| .+....+.+++..-.++++....+|..| +.+.|..+
T Consensus 136 ~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~~ 191 (226)
T 2zfd_A 136 QGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSL 191 (226)
T ss_dssp SSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 4556666666665 2344556667776677777788777766 44444443
No 43
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=34.64 E-value=91 Score=20.33 Aligned_cols=48 Identities=6% Similarity=-0.032 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHh-----CCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHH
Q psy5623 58 PKMTKREASLIL-----GVSQSANRMKIKEAHKRIITLNHPDRGG--SPYLAAKI 105 (116)
Q Consensus 58 ~~m~~~eA~~iL-----gl~~~~~~~~ik~~yr~l~~~~HPDk~g--s~~~~~~i 105 (116)
+.++.+|-..+| .+....+.+++..-.+.++....+|..| +.+.|..+
T Consensus 126 G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~ 180 (207)
T 2ehb_A 126 GFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDF 180 (207)
T ss_dssp SSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 345555555544 1233445555555555666677776665 44444443
No 44
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=32.45 E-value=81 Score=19.28 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy5623 73 QSANRMKIKEAHKRIITL 90 (116)
Q Consensus 73 ~~~~~~~ik~~yr~l~~~ 90 (116)
....+..|+++||+|-..
T Consensus 68 ~Pl~P~HireA~rrl~~~ 85 (89)
T 1bh9_B 68 PPLQPKHMREAVRRLKSK 85 (89)
T ss_dssp SSCCHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHc
Confidence 346788999999998764
No 45
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.92 E-value=23 Score=18.99 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=17.8
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5623 59 KMTKREASLILGVSQSANRMKIKEAHKRIITLN 91 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~ 91 (116)
.+|..|--+.||+++. .|+...++...+.
T Consensus 13 g~s~~eIA~~l~is~~----tV~~~~~~~~~kl 41 (61)
T 2jpc_A 13 GYTNHGISEKLHISIK----TVETHRMNMMRKL 41 (61)
T ss_dssp SCCSHHHHHHTCSCHH----HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHH----HHHHHHHHHHHHH
Confidence 4566788889999655 4444444444443
No 46
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=30.71 E-value=32 Score=23.08 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=24.1
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5623 67 LILGVSQSANRMKIKEAHKRIITLNHPD 94 (116)
Q Consensus 67 ~iLgl~~~~~~~~ik~~yr~l~~~~HPD 94 (116)
..+-+....+.+|++++=..++.+.|||
T Consensus 36 ~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 36 KTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred cccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 4455666789999999999999999997
No 47
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=30.70 E-value=37 Score=19.04 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRII 88 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~ 88 (116)
..+|..|--+.||++...-...+.++.++|-
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5689999999999987755555555555554
No 48
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=27.89 E-value=43 Score=19.61 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRII 88 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~ 88 (116)
..+|..|.-++||++...-...+.++.++|-
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5799999999999977654444444444443
No 49
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.74 E-value=51 Score=19.26 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC
Q psy5623 75 ANRMKIKEAHKRIITLNHPDRG 96 (116)
Q Consensus 75 ~~~~~ik~~yr~l~~~~HPDk~ 96 (116)
-|.+||+++|+.|......+.|
T Consensus 43 Rt~~eV~~~y~~L~~d~~~~~G 64 (72)
T 2cqq_A 43 RSVTDVTTKAKQLKDSVTCSPG 64 (72)
T ss_dssp SCHHHHHHHHHHHHHSCCCCSC
T ss_pred CCHHHHHHHHHHHHHhcCccCC
Confidence 5899999999999887665533
No 50
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.72 E-value=29 Score=20.19 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 91 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~ 91 (116)
..++..|--+.||++.. .|+...++...+.
T Consensus 35 ~g~s~~eIA~~l~is~~----tV~~~l~r~~~kL 64 (82)
T 1je8_A 35 QGLPNKMIARRLDITES----TVKVHVKHMLKKM 64 (82)
T ss_dssp TTCCHHHHHHHHTSCHH----HHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHH----HHHHHHHHHHHHH
Confidence 45888999999998654 4555444444444
No 51
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=27.63 E-value=31 Score=25.03 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCHH
Q psy5623 77 RMKIKEAHKRIITLNHPDRGGSPY 100 (116)
Q Consensus 77 ~~~ik~~yr~l~~~~HPDk~gs~~ 100 (116)
.+-|.+-|.+| |.||||+++
T Consensus 159 ~~~~~~~y~~~----h~dkgg~fe 178 (227)
T 3v7o_A 159 ADSVLEVYQRL----HSDKGGNFE 178 (227)
T ss_dssp HHHHHHHHHHH----HTCCTTHHH
T ss_pred hhHHHHHHHHH----hccCCccHH
Confidence 35678888876 899999875
No 52
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=27.13 E-value=77 Score=20.78 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC--CH----HHHHHHHHHHHHh
Q psy5623 74 SANRMKIKEAHKRIITLNHPDRGG--SP----YLAAKINEAKDLL 112 (116)
Q Consensus 74 ~~~~~~ik~~yr~l~~~~HPDk~g--s~----~~~~~i~~Ay~~L 112 (116)
++|.+-|..+-..=++.+|||..| +| +..++|..=|..|
T Consensus 18 ~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L 62 (123)
T 4aj5_K 18 ESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTL 62 (123)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHH
Confidence 356788888888899999999853 43 3344455555444
No 53
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=26.78 E-value=36 Score=18.81 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRI 87 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l 87 (116)
..+|..|--++||++...-...+.++.++|
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 568999999999997664334444444333
No 54
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=26.58 E-value=47 Score=19.53 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy5623 57 EPKMTKREASLILGVSQSANRMKIKEAHKRII 88 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~ 88 (116)
-..+|..|.-++||++...-...+.++.++|-
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 34589999999999987754444444444443
No 55
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=26.22 E-value=53 Score=19.17 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q psy5623 70 GVSQSANRMKIKEAHKRII 88 (116)
Q Consensus 70 gl~~~~~~~~ik~~yr~l~ 88 (116)
||++++|.++|++.|.+.-
T Consensus 8 nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 8 MLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp TCCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhC
Confidence 7889999999999988764
No 56
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.95 E-value=40 Score=18.27 Aligned_cols=32 Identities=13% Similarity=0.280 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIIT 89 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~ 89 (116)
..+|..|.-+.||+++..-...+.++.++|-.
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45889999999999776544445555554443
No 57
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=25.77 E-value=1.2e+02 Score=18.41 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHhCC--CCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHH
Q psy5623 57 EPKMTKREASLILGV--SQSANRMKIKEAHKRIITLNHPDRGG--SPYLAAKI 105 (116)
Q Consensus 57 ~~~m~~~eA~~iLgl--~~~~~~~~ik~~yr~l~~~~HPDk~g--s~~~~~~i 105 (116)
.+.++.+|-..+|.- ....+.+++...++.++....+|..| +...|..+
T Consensus 89 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~ 141 (155)
T 3ll8_B 89 DGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAV 141 (155)
T ss_dssp SSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 456777776666543 34566777777777777778777766 44555444
No 58
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=25.40 E-value=68 Score=21.14 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=17.7
Q ss_pred CCCHHHHHHHhCCCCCCCHHHH
Q psy5623 59 KMTKREASLILGVSQSANRMKI 80 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~i 80 (116)
.+|.+|-+++||+..+.|++|-
T Consensus 128 gkt~eeir~~f~I~~d~t~eEe 149 (159)
T 2ast_A 128 GKTPEEIRKTFNIKNDFTEEEE 149 (159)
T ss_dssp SCCHHHHHHHTTCCCCSCTTHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHH
Confidence 3688999999999988776653
No 59
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.30 E-value=43 Score=20.02 Aligned_cols=30 Identities=3% Similarity=0.086 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRI 87 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l 87 (116)
..+|..|--+.||++...-...+++.+++|
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 457888999999996654334444444444
No 60
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=25.27 E-value=61 Score=20.30 Aligned_cols=53 Identities=21% Similarity=0.004 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLL 112 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L 112 (116)
..+|..|.-+.||++++.-...+.++.++|-..... .+-...++.+.+-++-|
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~--~~~~~~~~~~~~~~~~~ 89 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMK--LHMYSDYVVRSEIFDDM 89 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHH
Confidence 458899999999999876555555555555444321 23344555554444443
No 61
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.40 E-value=52 Score=17.99 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 91 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~ 91 (116)
..++..|.-+.||+++. .|+...+++..+.
T Consensus 25 ~g~s~~eIA~~l~is~~----tV~~~~~~~~~kl 54 (74)
T 1fse_A 25 QDKTTKEIASELFISEK----TVRNHISNAMQKL 54 (74)
T ss_dssp TTCCHHHHHHHHTSCHH----HHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHH----HHHHHHHHHHHHH
Confidence 44688899999998654 4444444444443
No 62
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=24.02 E-value=63 Score=21.80 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=18.1
Q ss_pred CCCHHHHHHHhCCCCCCCHHHH
Q psy5623 59 KMTKREASLILGVSQSANRMKI 80 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~i 80 (116)
..|.+|-+++||+..+.|++|-
T Consensus 135 gktpeeiR~~f~I~nd~t~eEe 156 (169)
T 3v7d_A 135 GRSPEEIRRTFNIVNDFTPEEE 156 (169)
T ss_dssp TCCHHHHHHHHTCCCCCCHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHH
Confidence 3578999999999999888763
No 63
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=23.92 E-value=1.1e+02 Score=20.28 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=17.8
Q ss_pred CCCHHHHHHHhCCCCCCCHHH
Q psy5623 59 KMTKREASLILGVSQSANRMK 79 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~ 79 (116)
..|.+|-+++||+..+.|++|
T Consensus 127 gkt~eeir~~f~I~nd~t~eE 147 (160)
T 2p1m_A 127 GKTPEEIRTTFNIKNDFTPEE 147 (160)
T ss_dssp TCCHHHHHHHTTCCCCCCHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHH
Confidence 468899999999998888765
No 64
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=23.51 E-value=99 Score=16.83 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHh---CCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHH
Q psy5623 57 EPKMTKREASLIL---GVSQSANRMKIKEAHKRIITLNHPDRGG--SPYLAAK 104 (116)
Q Consensus 57 ~~~m~~~eA~~iL---gl~~~~~~~~ik~~yr~l~~~~HPDk~g--s~~~~~~ 104 (116)
.+..+.+|-..+| |.....+.++++..+..++....+|..| +...|.+
T Consensus 21 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~ 73 (83)
T 1yx7_A 21 DGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLN 73 (83)
T ss_dssp SSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHH
T ss_pred CCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence 4456666655554 4223456677777777788888887766 4555553
No 65
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.37 E-value=41 Score=18.83 Aligned_cols=30 Identities=7% Similarity=0.157 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 91 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~ 91 (116)
..|+..|.-+.||++. ..|+...++...+.
T Consensus 30 ~g~s~~eIA~~l~is~----~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISP----RTVEVHRANVMAKM 59 (79)
T ss_dssp TTCCHHHHHHHTTSCH----HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH----HHHHHHHHHHHHHH
Confidence 4588899999999854 46666666666655
No 66
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=23.22 E-value=62 Score=22.13 Aligned_cols=11 Identities=9% Similarity=0.063 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q psy5623 100 YLAAKINEAKD 110 (116)
Q Consensus 100 ~~~~~i~~Ay~ 110 (116)
..+.++|.+|+
T Consensus 102 ~~l~~lN~~Y~ 112 (174)
T 2o70_A 102 VHMYRLNSEYK 112 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45777888887
No 67
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=23.11 E-value=1.1e+02 Score=21.08 Aligned_cols=30 Identities=17% Similarity=0.085 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy5623 82 EAHKRIITLNHPDRGGSPYLAAKINEAKDL 111 (116)
Q Consensus 82 ~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~ 111 (116)
-++=+.++..|||++.+++...+..+-.+.
T Consensus 140 valARv~K~l~Pernp~~ehwE~a~~v~Dl 169 (171)
T 1r4v_A 140 LMHADVIKKATGERKPSREAMEFVAQIVDK 169 (171)
T ss_dssp HHHHHHHHHHCCCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 345678899999999998877776655544
No 68
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=22.72 E-value=59 Score=22.69 Aligned_cols=12 Identities=8% Similarity=-0.147 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q psy5623 100 YLAAKINEAKDL 111 (116)
Q Consensus 100 ~~~~~i~~Ay~~ 111 (116)
..+.++|.+|+-
T Consensus 123 ~~L~~LN~~Ye~ 134 (189)
T 3o7i_A 123 QALREGNARYEA 134 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457778999873
No 69
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=22.70 E-value=36 Score=18.32 Aligned_cols=14 Identities=29% Similarity=0.152 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHH
Q psy5623 96 GGSPYLAAKINEAK 109 (116)
Q Consensus 96 ~gs~~~~~~i~~Ay 109 (116)
-|..+.|++||+--
T Consensus 11 Fg~~~rFQKINqMv 24 (46)
T 2aze_C 11 FGTSEKFQKINQMV 24 (46)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHH
Confidence 35678999999753
No 70
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=21.82 E-value=1.5e+02 Score=19.96 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCC-CCCCHHHHHHHHHHHHHh
Q psy5623 83 AHKRIITLNHPD-RGGSPYLAAKINEAKDLL 112 (116)
Q Consensus 83 ~yr~l~~~~HPD-k~gs~~~~~~i~~Ay~~L 112 (116)
++=+.++..||| ++.+++...+..+-.+.+
T Consensus 117 ~lArv~K~l~pe~rnp~~eh~E~a~~v~dl~ 147 (148)
T 1wwi_A 117 AYARVLKELDPALKNPQTEHHERAERVFNLL 147 (148)
T ss_dssp HHHHHHHHHSTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCCHHHHHHHHHHHHhh
Confidence 345778999999 899988877766665554
No 71
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=21.60 E-value=29 Score=22.37 Aligned_cols=33 Identities=6% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITL 90 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~ 90 (116)
-.++..|-.+++|++.+..-++++++.++|+.+
T Consensus 46 ~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~r 78 (132)
T 1hkq_A 46 LTIRADTFAEVFGIDVKHAYAALDDAATKLFNR 78 (132)
T ss_dssp EEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEHHHHHHHHCCCcchHHHHHHHHHHHHhhC
Confidence 357789999999999887788999999998764
No 72
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=21.53 E-value=79 Score=17.14 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHHHH
Q psy5623 70 GVSQSANRMKIKEAHKRI 87 (116)
Q Consensus 70 gl~~~~~~~~ik~~yr~l 87 (116)
||+++.+.++|++.|.+.
T Consensus 6 nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 6 GLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp CCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 688888999999888875
No 73
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=21.16 E-value=60 Score=21.39 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=12.4
Q ss_pred HHHHHHHhCCCCCCCH
Q psy5623 84 HKRIITLNHPDRGGSP 99 (116)
Q Consensus 84 yr~l~~~~HPDk~gs~ 99 (116)
-.+.+++.|||.+=|.
T Consensus 42 IyKVLKQVhpd~gISs 57 (126)
T 1tzy_B 42 VYKVLKQVHPDTGISS 57 (126)
T ss_dssp HHHHHHHHCTTCEECH
T ss_pred HHHHHHHhCCCCCcCH
Confidence 4677888999987654
No 74
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.13 E-value=59 Score=19.89 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=18.1
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5623 59 KMTKREASLILGVSQSANRMKIKEAHKRIITLN 91 (116)
Q Consensus 59 ~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~ 91 (116)
.++..|--+.||+++ ..|+...+++..+.
T Consensus 49 G~s~~EIA~~L~iS~----~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSI----KTISSQKKSAMMKL 77 (99)
T ss_dssp TCCHHHHHHHHTSCH----HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCH----HHHHHHHHHHHHHH
Confidence 466777778888854 45555555555554
No 75
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=20.97 E-value=61 Score=21.26 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=12.3
Q ss_pred HHHHHHHhCCCCCCCH
Q psy5623 84 HKRIITLNHPDRGGSP 99 (116)
Q Consensus 84 yr~l~~~~HPDk~gs~ 99 (116)
-.+.+++.|||.+=|.
T Consensus 39 IyKVLKQVhpd~gISs 54 (123)
T 2nqb_D 39 IYTVLKQVHPDTGISS 54 (123)
T ss_dssp HHHHHHHHCTTCEECH
T ss_pred HHHHHHHhCCCCCcCH
Confidence 4677888999987654
No 76
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.86 E-value=73 Score=19.56 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5623 58 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 91 (116)
Q Consensus 58 ~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~ 91 (116)
..+|.+|--++||++...-...+.++.++|-...
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999998765555566666554443
No 77
>3hhw_A Phosphoprotein; protein complex, template, replication, negative strand RNA chaperone, phosphoprotein, RNA replication, virion; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 3hhz_A
Probab=20.37 E-value=40 Score=20.65 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=23.1
Q ss_pred ccccCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHH
Q psy5623 50 KYYKGGFEPKMTKREASLILGVSQSANRMKIKEAH 84 (116)
Q Consensus 50 ~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~ik~~y 84 (116)
.|++-+-...|+..||. |+||...--..++|-+|
T Consensus 52 ef~sv~~~G~~s~keai-ilGLrhKklyNqaRvKY 85 (87)
T 3hhw_A 52 EFISVGGNGRMSHKEAI-LLGLRYKKLYNQARVKY 85 (87)
T ss_dssp HHHHHTCCSSSCHHHHH-HHHTTTSCCHHHHHHHB
T ss_pred hhheeCCCCCccHHHHH-HHhhHHHhhhhhhhhee
Confidence 55555677889999986 88998764444444443
No 78
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.02 E-value=92 Score=19.95 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=27.6
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Q psy5623 55 GFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNH 92 (116)
Q Consensus 55 ~~~~~m~~~eA~~iLgl~~~~~~~~ik~~yr~l~~~~H 92 (116)
-+-..+|..|.-++||++++.-...+.++-++|-....
T Consensus 105 ~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 105 TAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999887666666666666665554
Done!