RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5623
(116 letters)
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 99.0 bits (247), Expect = 5e-29
Identities = 35/64 (54%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 51 YYKGGFEPKMTKREASLILGVSQSA-NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAK 109
+ KGGF+PKM +EA IL ++++ + K+KE H++I+ NHPD+GGSP+LA KINEAK
Sbjct: 2 FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAK 61
Query: 110 DLLE 113
D LE
Sbjct: 62 DFLE 65
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 65
Score = 69.5 bits (170), Expect = 2e-17
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 60 MTKREASLILGVSQS---ANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQ 114
MT E+ IL + +S N KI + +N ++GGS YL +K+ A + L+
Sbjct: 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 46.8 bits (111), Expect = 1e-07
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 68 ILGVSQSA--NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQSK 116
+LG+ +SA N +++A+ + HPD+GG K+N +E
Sbjct: 16 LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGV 66
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 42.9 bits (101), Expect = 1e-06
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 68 ILGVSQSA--NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQSK 116
+LG+ +SA N +++A+ + HPD+GG K+N +E
Sbjct: 13 LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGV 63
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 41.1 bits (96), Expect = 3e-06
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 68 ILGVSQSA--NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 115
+L + + + ++++A+K+ L HPD+GGS L ++N +
Sbjct: 16 LLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTE 65
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 39.1 bits (91), Expect = 6e-05
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 59 KMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKD 110
+M K++ ILG SAN +K+ ++++I + HPD+ + A + E
Sbjct: 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQ 57
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 35.3 bits (82), Expect = 4e-04
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAK---INEAKDLL 112
+ + ILGVS+ A+ +K+A++R+ HPD+ +P I A +L
Sbjct: 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVL 59
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 36.7 bits (84), Expect = 7e-04
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 52 YKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDR-GGSPYLAAKINEAKD 110
+ G + +LGVS++A+ +I++A K++ HPD+ +P +
Sbjct: 10 HSSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINR 69
Query: 111 LLE 113
E
Sbjct: 70 AYE 72
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 35.0 bits (81), Expect = 7e-04
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAK---INEAKDLL 112
+ ILGV +SA+ +IK+A ++ HPD+ SP AK I EA + L
Sbjct: 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETL 59
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 33.5 bits (77), Expect = 0.003
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GSPYLAAK---INEAKDLL 112
++ +LGV +A + +IK A+ R L HPDR GS A + I++A +L
Sbjct: 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVL 70
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 33.2 bits (76), Expect = 0.004
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 59 KMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDR--GGSPYLAAKINEAK 109
+ K++ ILG SAN +K+ ++++I L HPD+ P + K
Sbjct: 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQK 64
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 34.5 bits (79), Expect = 0.004
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDR-GGSPYLAAK---INEAKDLL 112
+LGVS++A+ +I++A K++ HPD+ +P IN A ++L
Sbjct: 7 LLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 55
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 33.0 bits (76), Expect = 0.004
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GSPYLAAK---INEAKDLL 112
+ + ILGV ++A++ +IK+A+ ++ HPD P K + EA ++L
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVL 60
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 32.8 bits (75), Expect = 0.005
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAK---INEAKDLL 112
+LGV A+R ++ +A++++ L HPD+ +P + A+ L
Sbjct: 32 MLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 33.0 bits (76), Expect = 0.005
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRG-GSPYLAAK---INEAKDLL 112
ILGVS++A +I++A+KR+ HPDR G AK I EA ++L
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 32.2 bits (74), Expect = 0.006
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 55 GFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDR 95
G + +L V + A+ IK+A++++ HPD+
Sbjct: 1 GSSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDK 41
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 32.2 bits (74), Expect = 0.007
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAK---INEAKDLL 112
LG+++ A+ +IK A++R HPD+ P K I EA D+L
Sbjct: 8 TLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVL 55
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 32.8 bits (75), Expect = 0.008
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 59 KMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GSPYLAAK---INEAKDLL 112
+ +LG + ++ +I K HPD+ +P + +AK++L
Sbjct: 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEIL 73
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 32.0 bits (73), Expect = 0.013
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GSPYLAAK---INEAKDLL 112
+ +LG+ ++A IK++++++ HPD+ +P A K IN A +L
Sbjct: 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 31.2 bits (71), Expect = 0.017
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAK---INEAKDLL 112
+LGVS++A++ IK+A+K++ HPD+ P + I++A ++L
Sbjct: 22 VLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEIL 69
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 30.7 bits (70), Expect = 0.030
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 55 GFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDR 95
G +LGV SA+ IK+A++++ HPD+
Sbjct: 1 GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDK 41
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 30.8 bits (70), Expect = 0.033
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDR-GGSPYLAAKINEAKDLL 112
+ + + +LGVS SAN ++K+ +++ HPD+ G +I+EA ++L
Sbjct: 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEIL 58
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 29.5 bits (67), Expect = 0.058
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 60 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAK---INEAKDLL 112
+ + +LGV A+ ++K+A++++ HPD+ +P A + I++A ++L
Sbjct: 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDK--NPDGAEQFKQISQAYEVL 58
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 29.6 bits (67), Expect = 0.089
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAA-----KINEAKDLL 112
IL V +SA+ IK+A++R HPD+ A ++ EA ++L
Sbjct: 7 ILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVL 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.11
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 23/76 (30%)
Query: 17 YAGRYILKAAPMASARLNEALKALPKAES-FANSKYYKGGFEPKMTKREASLILGVSQSA 75
Y YI P +N L LPK E SKY L+ + A
Sbjct: 530 Y-KPYICDNDPKYERLVNAILDFLPKIEENLICSKY-------------TDLL----RIA 571
Query: 76 ----NRMKIKEAHKRI 87
+ +EAHK++
Sbjct: 572 LMAEDEAIFEEAHKQV 587
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 29.9 bits (68), Expect = 0.12
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAK---INEAKDLL 112
ILGV + + IK A++R+ HPD AK + EA ++L
Sbjct: 33 ILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVL 80
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 28.0 bits (62), Expect = 0.34
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 69 LGVSQSANRMKIKEAHKRIITLNHPDRGGSP---YLAAK----INEAKDLLEQ 114
+G++ ++K+ +++ + + HP + A +N+A E
Sbjct: 39 VGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone
prosthetic group; HET: MDO; 1.50A {Rhodobacter
sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A*
2o7f_A*
Length = 521
Score = 28.7 bits (65), Expect = 0.36
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 4 TAILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKA 43
T+ +TG+ L R++ A +A L E L+ +A
Sbjct: 203 TSAMTGIALVNAHAC-RHLGNWAVALTALLAECLRGRTEA 241
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 27.8 bits (62), Expect = 0.40
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 60 MTKREASLILGVSQSA-NRMKIKEAHKRIITLNHPDR--GGSPYLAA-----KINEAKDL 111
+L V++ ++ K+ +A++ + +HPDR L A I A +
Sbjct: 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYET 71
Query: 112 L 112
L
Sbjct: 72 L 72
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Length = 547
Score = 28.4 bits (64), Expect = 0.46
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 4 TAILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKA 43
T+ + GLG+ + + ++ E L K
Sbjct: 220 TSAMVGLGVLLYDEV-KRLFDTYLTVTSLSIEGLHGKTKP 258
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation;
HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB:
1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Length = 507
Score = 28.3 bits (64), Expect = 0.52
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 3 STAILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKA 43
T T L + YA + AA EA+
Sbjct: 194 GTQASTAYALRGLFYA-EDLYAAAIACGGLSVEAVLGSRSP 233
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247;
2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A*
2ohy_A* 3kdz_A* 3kdy_A*
Length = 526
Score = 28.4 bits (64), Expect = 0.54
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 4 TAILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKA 43
T+ +TGLG VG A + A + +A L EA++
Sbjct: 194 TSGMTGLGSLVVGRA-LEQAQQAEIVTALLIEAVRGSTSP 232
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 27.0 bits (60), Expect = 0.60
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 57 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAA-----KINEAKDL 111
+E + ++ + + K+ +R+ HPD+ + A + +
Sbjct: 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINR 69
Query: 112 LEQ 114
LE+
Sbjct: 70 LEK 72
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 26.9 bits (59), Expect = 1.0
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 69 LGVSQSANRMKIKEAHKRIITLNHPDRGGSP-------YLAAK----INEAKDLLEQS 115
+ + ++++++R + + HPD+ Y+A K + EA D
Sbjct: 46 VPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 1.2
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 57 EPKMTKR-EASLILGVSQSANRMKIK 81
E + K+ +ASL L SA + IK
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase,
lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Length = 385
Score = 27.3 bits (60), Expect = 1.4
Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 19/120 (15%)
Query: 14 AVGYAGRY----ILKAAPMASARLNEALKALPKAESFANSK---YYKGGFEPKMTKREAS 66
A+G Y I+ AA M + L A+ + + + E +
Sbjct: 30 AIGCFPVYCPEEIIHAAGMLPVGIWGGQTELDLAKQYFPAFACSIMQSCLEYGLKGAYDE 89
Query: 67 LIL--------GVSQSANRMKIKEAHKRIITLNHP----DRGGSPYLAAKINEAKDLLEQ 114
L + K H + I+L HP G YL ++ K LE+
Sbjct: 90 LSGVIIPGMCDTLICLGQNWKSAVPHIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEE 149
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 26.8 bits (60), Expect = 1.9
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 59 KMTKREASLILGVSQSANRMKIKEAHKRIITLNH 92
M K+ + I + + +K +I+L+
Sbjct: 30 DMAKKTFNPIRAIVDNMKVK--PNPNKTMISLSI 61
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A
{Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1
PDB: 1sc5_A
Length = 239
Score = 26.4 bits (59), Expect = 2.4
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 33 LNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQS 74
+ EA+ LP+ E + + +E + IL S S
Sbjct: 181 VKEAVSKLPEREKLVIQLIFYEE----LPAKEVAKILETSVS 218
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 25.8 bits (57), Expect = 3.6
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 29 ASARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRII 88
A A + + + KR+ ILGV ++A + +I +A++++
Sbjct: 348 AIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLA 407
Query: 89 TLNHPDRGGSPY-------LAAKINEAKDLL 112
HPD + I AK++L
Sbjct: 408 LQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA
cleavage, RNAse, DN protein; 2.10A {Drosophila
melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Length = 249
Score = 25.8 bits (56), Expect = 4.1
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 23 LKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKE 82
+ ++ + + + F+N Y+ + + RE I V + +I+
Sbjct: 1 MGSSHHHHHHSQDPMSNFVNLDIFSN---YQKYIDNEQEVREN--IRIVVR-----EIEH 50
Query: 83 AHKRIITLNHPDRGGSPYLAAKINEAKDLLEQ 114
K ++A A+ +E
Sbjct: 51 LSKEAQIKLQIIHSDLSQISAACGLARKQVEL 82
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 25.2 bits (54), Expect = 4.8
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 69 LGVSQSANRMKIKEAHKRIITLNHPDRGGSP---YLAAK----INEAKDLLEQ 114
+G++ ++K+ +++ + + HPD+ A +N+A E
Sbjct: 123 VGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, tandem, signaling protein, alternative
splicing, ANK repeat; NMR {Homo sapiens}
Length = 148
Score = 25.1 bits (54), Expect = 4.8
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 43 AESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEA 83
++F + Y K+ + E +L ++ +R +I +
Sbjct: 104 TKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILAS 144
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 25.4 bits (56), Expect = 5.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 7 LTGLGLAAVGYAGRYILKAAPMASARL 33
L LG A + + I + P+ SA L
Sbjct: 70 LISLGTATARFVDQDISDSRPVLSAIL 96
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 25.1 bits (55), Expect = 7.2
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 22 ILKAAPMASARLNEALKAL-PKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKI 80
+ A ASA L + + + + F ++YY T+ + + +S+ I
Sbjct: 10 VGTIALRASALLKAMSQDIEDQRKEFNQTEYY-----QTFTRNAVAKLPKLSRRIVDQAI 64
Query: 81 KEAHKRIITLNHPDRGGSPYLAAKINEAKDLLE 113
KE + N G A I D+
Sbjct: 65 KEMEEDGYQFNKKQVGNVEQYALTIQNVIDIYA 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.346
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,666,081
Number of extensions: 90860
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 49
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)