RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5623
(116 letters)
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 31.1 bits (70), Expect = 0.007
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 59 KMTKREASLILGVSQSA--NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQSK 116
+ K +L + + + ++++A+K+ L HPD+GGS L ++N +
Sbjct: 7 RADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEV 66
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus
[TaxId: 271]}
Length = 61
Score = 28.9 bits (65), Expect = 0.030
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 33 LNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRI 87
L +AL L + E+ + T E GV++ R +A +++
Sbjct: 2 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKL 56
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 28.0 bits (62), Expect = 0.12
Identities = 7/52 (13%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPY-------LAAKINEAKDLL 112
+G++ ++K+ +++ + + HPD+ + ++N+A
Sbjct: 38 PVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 89
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 27.8 bits (61), Expect = 0.13
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKD 110
LG+++ A+ +IK A++R HPD+ P K E +
Sbjct: 8 TLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAE 50
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 26.2 bits (57), Expect = 0.51
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 63 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYL-----AAKINEAKDLLEQ 114
+E + ++ + + K+ +R+ HPD+ + + + LE+
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK 72
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia
coli [TaxId: 562]}
Length = 68
Score = 25.8 bits (57), Expect = 0.53
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 35 EALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPD 94
+ L L E+ + T E V++ R +A ++ L HP
Sbjct: 1 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK---LRHPS 57
Query: 95 R 95
R
Sbjct: 58 R 58
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima
[TaxId: 2336]}
Length = 87
Score = 25.1 bits (55), Expect = 1.1
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 32 RLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLN 91
L + LK L E+ Y T E V++ R +A ++ L
Sbjct: 11 ELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRK---LR 67
Query: 92 HPDRGGSPYLAAKINEAKDLLEQSK 116
HP R + + L+++++
Sbjct: 68 HPSR------SKYLKSLLSLMDENE 86
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 25.0 bits (54), Expect = 1.1
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 68 ILGVSQSANRMKIKEAHKRIITLNHPDR-GGSPYLAAKINEAKD 110
ILGVS++A +I++A+KR+ HPDR G AK E K+
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKE 51
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 24.2 bits (52), Expect = 2.8
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 59 KMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLA----------AKINEA 108
+ K++ ILG SAN +K+ ++++I L HPD+ + A +I++A
Sbjct: 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQA 71
Query: 109 KDLL 112
+L
Sbjct: 72 WKIL 75
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain,
AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 163
Score = 23.5 bits (50), Expect = 6.6
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 5 AILT---GLGLAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMT 61
AI+T G G+ + LK A + + E LP + N +
Sbjct: 7 AIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDY 66
Query: 62 KREASLIL 69
R A L+L
Sbjct: 67 YRTAKLLL 74
>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId:
271]}
Length = 500
Score = 23.9 bits (51), Expect = 6.8
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 90 LNHPDRGGSPY 100
L G SPY
Sbjct: 49 LGPTGYGDSPY 59
>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium
yoelii [TaxId: 5861]}
Length = 357
Score = 23.7 bits (50), Expect = 8.4
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 27 PMASARLNEALKALPKAE 44
M+ E + +PK E
Sbjct: 17 GMSKKERYEIWRRIPKVE 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.346
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 377,251
Number of extensions: 14730
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 15
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)