Query psy5624
Match_columns 125
No_of_seqs 256 out of 1459
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:25:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0723|consensus 100.0 1.6E-30 3.5E-35 176.7 10.9 106 13-124 3-108 (112)
2 PTZ00100 DnaJ chaperone protei 99.9 1.7E-25 3.7E-30 155.4 10.8 106 18-123 7-116 (116)
3 PF03656 Pam16: Pam16; InterP 99.9 2.7E-26 5.9E-31 161.8 6.7 109 10-123 1-109 (127)
4 KOG3442|consensus 99.9 2.3E-22 5E-27 139.9 11.0 108 14-123 3-110 (132)
5 PHA03102 Small T antigen; Revi 99.6 1.3E-15 2.8E-20 110.6 6.8 54 71-124 4-59 (153)
6 COG0484 DnaJ DnaJ-class molecu 99.6 9.5E-16 2.1E-20 124.4 5.9 55 70-124 2-60 (371)
7 smart00271 DnaJ DnaJ molecular 99.6 6.7E-15 1.5E-19 90.0 6.2 52 73-124 2-58 (60)
8 cd06257 DnaJ DnaJ domain or J- 99.6 8.2E-15 1.8E-19 88.0 5.7 50 74-123 2-55 (55)
9 PTZ00037 DnaJ_C chaperone prot 99.5 9.7E-15 2.1E-19 120.7 7.2 60 65-124 21-80 (421)
10 KOG0713|consensus 99.5 3E-14 6.5E-19 113.8 5.3 53 72-124 16-72 (336)
11 PF00226 DnaJ: DnaJ domain; I 99.5 1.4E-13 3.1E-18 85.4 7.3 52 73-124 1-57 (64)
12 PRK14296 chaperone protein Dna 99.4 9E-14 2E-18 113.2 5.4 56 69-124 1-59 (372)
13 PRK09430 djlA Dna-J like membr 99.4 4.1E-13 8.8E-18 105.2 7.5 58 67-124 195-263 (267)
14 PRK14299 chaperone protein Dna 99.4 2.5E-13 5.5E-18 107.3 5.7 56 69-124 1-59 (291)
15 PRK14288 chaperone protein Dna 99.4 2.2E-13 4.7E-18 110.9 5.4 53 72-124 3-59 (369)
16 PRK14286 chaperone protein Dna 99.4 2.2E-13 4.8E-18 110.9 4.9 56 69-124 1-60 (372)
17 PRK14287 chaperone protein Dna 99.4 4.1E-13 8.8E-18 109.4 5.5 54 71-124 3-59 (371)
18 PRK14279 chaperone protein Dna 99.4 5.4E-13 1.2E-17 109.4 5.6 53 72-124 9-65 (392)
19 PRK14282 chaperone protein Dna 99.4 6.4E-13 1.4E-17 108.0 5.3 54 71-124 3-61 (369)
20 PRK10767 chaperone protein Dna 99.4 6.7E-13 1.5E-17 107.9 5.2 55 70-124 2-60 (371)
21 PRK14285 chaperone protein Dna 99.4 8E-13 1.7E-17 107.4 5.4 53 72-124 3-59 (365)
22 PRK14276 chaperone protein Dna 99.4 7.6E-13 1.6E-17 108.0 5.2 54 71-124 3-59 (380)
23 PRK14280 chaperone protein Dna 99.4 8.3E-13 1.8E-17 107.7 5.3 55 70-124 2-59 (376)
24 PRK14294 chaperone protein Dna 99.4 9.1E-13 2E-17 107.1 5.5 56 69-124 1-60 (366)
25 KOG0712|consensus 99.4 7.5E-13 1.6E-17 106.4 4.9 50 75-124 7-57 (337)
26 PRK14301 chaperone protein Dna 99.3 1.1E-12 2.3E-17 106.9 5.1 55 70-124 2-60 (373)
27 PHA02624 large T antigen; Prov 99.3 2.3E-12 4.9E-17 110.4 7.2 54 71-124 10-65 (647)
28 KOG0721|consensus 99.3 1.6E-12 3.4E-17 98.8 5.5 55 71-125 98-156 (230)
29 PRK14283 chaperone protein Dna 99.3 1.2E-12 2.6E-17 106.8 5.3 54 71-124 4-60 (378)
30 PRK14298 chaperone protein Dna 99.3 1.5E-12 3.3E-17 106.3 5.7 53 72-124 5-60 (377)
31 PRK14278 chaperone protein Dna 99.3 1.1E-12 2.4E-17 107.0 4.8 52 73-124 4-58 (378)
32 PRK10266 curved DNA-binding pr 99.3 1.7E-12 3.7E-17 103.2 5.6 56 69-124 1-59 (306)
33 PRK14295 chaperone protein Dna 99.3 2.2E-12 4.8E-17 105.7 5.9 53 72-124 9-65 (389)
34 PRK14297 chaperone protein Dna 99.3 1.7E-12 3.7E-17 105.9 5.3 53 72-124 4-60 (380)
35 PRK14281 chaperone protein Dna 99.3 2.8E-12 6.1E-17 105.3 6.0 53 72-124 3-59 (397)
36 PRK14277 chaperone protein Dna 99.3 2.1E-12 4.5E-17 105.7 5.0 53 72-124 5-61 (386)
37 PRK14291 chaperone protein Dna 99.3 5.5E-12 1.2E-16 103.1 6.1 52 73-124 4-58 (382)
38 PRK14300 chaperone protein Dna 99.3 5.5E-12 1.2E-16 102.8 6.0 53 72-124 3-58 (372)
39 KOG0716|consensus 99.3 9.4E-12 2E-16 97.1 6.5 56 69-124 28-87 (279)
40 KOG0717|consensus 99.3 1E-11 2.3E-16 102.7 6.5 55 70-124 6-65 (508)
41 TIGR02349 DnaJ_bact chaperone 99.3 8.7E-12 1.9E-16 100.7 5.8 51 74-124 2-55 (354)
42 PRK14284 chaperone protein Dna 99.2 9.7E-12 2.1E-16 101.9 5.4 52 73-124 2-57 (391)
43 PRK14292 chaperone protein Dna 99.2 1.4E-11 3E-16 100.2 6.2 52 73-124 3-57 (371)
44 PRK14290 chaperone protein Dna 99.2 1.1E-11 2.4E-16 100.7 5.6 52 73-124 4-60 (365)
45 PRK14289 chaperone protein Dna 99.2 1.1E-11 2.4E-16 101.3 5.5 54 71-124 4-61 (386)
46 KOG0718|consensus 99.2 4.5E-11 9.7E-16 99.2 6.8 56 70-125 7-69 (546)
47 PRK14293 chaperone protein Dna 99.2 3.6E-11 7.7E-16 98.0 5.8 52 73-124 4-58 (374)
48 KOG0715|consensus 99.2 3.5E-11 7.5E-16 95.3 5.5 58 67-124 38-98 (288)
49 COG2214 CbpA DnaJ-class molecu 99.1 1.7E-10 3.7E-15 84.2 6.4 54 71-124 5-63 (237)
50 KOG0691|consensus 99.1 1.7E-10 3.6E-15 91.7 5.7 53 72-124 5-61 (296)
51 PTZ00341 Ring-infected erythro 99.0 2.5E-10 5.5E-15 101.6 5.3 55 70-124 571-628 (1136)
52 TIGR03835 termin_org_DnaJ term 99.0 3.8E-10 8.3E-15 98.5 5.4 52 73-124 3-57 (871)
53 PRK01356 hscB co-chaperone Hsc 99.0 1.2E-09 2.5E-14 80.4 6.0 52 73-124 3-63 (166)
54 PRK05014 hscB co-chaperone Hsc 99.0 1.2E-09 2.6E-14 80.6 5.9 51 74-124 3-64 (171)
55 KOG0722|consensus 98.9 7.3E-10 1.6E-14 86.5 3.6 53 72-124 33-88 (329)
56 KOG0719|consensus 98.9 1.5E-09 3.3E-14 83.5 4.9 51 73-123 15-71 (264)
57 PRK03578 hscB co-chaperone Hsc 98.9 3E-09 6.5E-14 78.9 5.7 53 72-124 6-69 (176)
58 PRK00294 hscB co-chaperone Hsc 98.9 3.1E-09 6.7E-14 78.7 5.4 52 73-124 5-67 (173)
59 KOG1789|consensus 98.8 1.8E-08 3.9E-13 90.7 7.1 57 66-122 1275-1336(2235)
60 KOG0720|consensus 98.8 8E-09 1.7E-13 85.7 4.3 53 72-124 235-290 (490)
61 PRK01773 hscB co-chaperone Hsc 98.6 1.6E-07 3.5E-12 69.5 6.1 52 73-124 3-65 (173)
62 COG5407 SEC63 Preprotein trans 98.5 3E-07 6.4E-12 76.8 7.7 52 74-125 100-160 (610)
63 KOG0624|consensus 98.5 1E-07 2.2E-12 77.8 4.9 53 72-124 394-453 (504)
64 KOG1150|consensus 98.5 8.6E-08 1.9E-12 72.6 4.1 51 73-123 54-109 (250)
65 KOG0714|consensus 98.5 9.5E-08 2.1E-12 72.9 3.4 53 72-124 3-60 (306)
66 KOG0568|consensus 98.5 3.1E-07 6.7E-12 71.2 6.0 51 71-121 46-100 (342)
67 KOG0550|consensus 98.4 2.7E-07 5.9E-12 76.3 4.5 53 72-124 373-430 (486)
68 TIGR00714 hscB Fe-S protein as 98.4 6.3E-07 1.4E-11 65.3 5.2 41 84-124 3-52 (157)
69 COG1076 DjlA DnaJ-domain-conta 97.5 0.0001 2.2E-09 54.3 4.0 50 72-121 113-173 (174)
70 COG5269 ZUO1 Ribosome-associat 97.4 0.00031 6.7E-09 55.8 5.2 54 72-125 43-105 (379)
71 PF13446 RPT: A repeated domai 97.2 0.0022 4.7E-08 39.5 6.3 31 68-98 1-31 (62)
72 KOG0431|consensus 96.8 0.0013 2.8E-08 55.3 3.9 37 83-119 399-442 (453)
73 KOG3192|consensus 93.6 0.21 4.6E-06 36.7 5.3 52 73-124 9-71 (168)
74 COG1076 DjlA DnaJ-domain-conta 90.3 0.33 7.2E-06 35.6 3.2 39 85-123 16-63 (174)
75 PF14687 DUF4460: Domain of un 84.1 1.5 3.2E-05 30.3 3.3 32 84-115 6-37 (112)
76 KOG3767|consensus 78.8 2.1 4.5E-05 34.8 2.9 39 68-106 44-88 (328)
77 PF03820 Mtc: Tricarboxylate c 73.9 4.1 9E-05 32.9 3.4 41 66-106 24-70 (308)
78 COG5552 Uncharacterized conser 68.7 29 0.00063 22.5 5.8 26 75-100 6-31 (88)
79 PF12669 P12: Virus attachment 57.9 11 0.00023 23.0 2.2 21 15-35 3-24 (58)
80 KOG1573|consensus 56.1 23 0.00051 26.4 4.2 39 66-104 70-115 (204)
81 KOG2070|consensus 52.5 6.6 0.00014 34.1 0.9 33 91-123 248-283 (661)
82 PF12728 HTH_17: Helix-turn-he 52.0 12 0.00026 21.2 1.7 15 69-83 2-16 (51)
83 PF04719 TAFII28: hTAFII28-lik 51.7 25 0.00055 23.3 3.5 14 83-96 77-90 (90)
84 TIGR01764 excise DNA binding d 46.9 13 0.00029 20.2 1.4 15 69-83 2-16 (49)
85 PRK09649 RNA polymerase sigma 46.2 25 0.00053 25.4 3.0 39 65-103 143-181 (185)
86 TIGR00824 EIIA-man PTS system, 45.5 37 0.00081 23.0 3.7 35 76-110 31-74 (116)
87 KOG0724|consensus 43.5 35 0.00075 27.2 3.7 40 84-123 4-51 (335)
88 PF04967 HTH_10: HTH DNA bindi 41.4 42 0.0009 20.0 3.0 38 58-97 15-52 (53)
89 PF11833 DUF3353: Protein of u 40.5 36 0.00079 25.6 3.2 23 81-103 1-23 (194)
90 PF01466 Skp1: Skp1 family, di 37.5 52 0.0011 20.7 3.2 24 68-91 45-68 (78)
91 PRK12529 RNA polymerase sigma 36.8 45 0.00097 23.8 3.1 34 66-99 141-174 (178)
92 PRK12547 RNA polymerase sigma 36.4 45 0.00097 23.3 3.0 37 67-103 127-163 (164)
93 PF07739 TipAS: TipAS antibiot 36.2 69 0.0015 20.9 3.8 38 78-118 50-88 (118)
94 PF05344 DUF746: Domain of Unk 35.7 70 0.0015 20.1 3.4 37 66-103 11-47 (65)
95 PF04545 Sigma70_r4: Sigma-70, 35.6 33 0.00071 19.3 1.8 28 66-97 18-45 (50)
96 COG2879 Uncharacterized small 35.0 35 0.00075 21.4 1.9 15 92-106 27-41 (65)
97 PF08281 Sigma70_r4_2: Sigma-7 34.7 25 0.00054 20.0 1.3 19 66-84 24-42 (54)
98 KOG3960|consensus 34.5 29 0.00064 27.5 1.9 15 109-123 128-142 (284)
99 PF13374 TPR_10: Tetratricopep 34.4 26 0.00056 18.1 1.2 17 87-103 26-42 (42)
100 PF07709 SRR: Seven Residue Re 34.1 37 0.0008 14.6 1.5 11 111-121 3-13 (14)
101 cd06170 LuxR_C_like C-terminal 33.5 49 0.0011 18.3 2.4 30 67-100 14-43 (57)
102 cd04762 HTH_MerR-trunc Helix-T 33.2 30 0.00064 18.5 1.4 15 69-83 1-15 (49)
103 COG3755 Uncharacterized protei 33.0 53 0.0012 23.2 2.9 35 84-121 48-83 (127)
104 PRK13798 putative OHCU decarbo 31.8 50 0.0011 24.2 2.7 11 109-119 99-109 (166)
105 smart00421 HTH_LUXR helix_turn 30.9 58 0.0013 17.8 2.4 30 67-100 17-46 (58)
106 TIGR00798 mtc tricarboxylate c 30.9 73 0.0016 26.0 3.7 38 69-106 36-78 (318)
107 PF04282 DUF438: Family of unk 30.5 31 0.00067 21.9 1.2 26 77-102 6-31 (71)
108 smart00427 H2B Histone H2B. 30.2 68 0.0015 21.3 2.9 15 94-108 8-22 (89)
109 cd04761 HTH_MerR-SF Helix-Turn 30.2 35 0.00075 18.7 1.3 30 69-104 1-30 (49)
110 PF13384 HTH_23: Homeodomain-l 30.1 26 0.00056 19.6 0.8 26 68-94 17-42 (50)
111 PF05801 DUF840: Lagovirus pro 29.9 76 0.0016 21.4 3.1 31 16-48 4-34 (114)
112 PRK09636 RNA polymerase sigma 29.6 1.3E+02 0.0028 23.3 4.9 50 67-117 130-179 (293)
113 PF13950 Epimerase_Csub: UDP-g 29.3 1.3E+02 0.0028 18.2 3.9 32 70-103 28-60 (62)
114 PF08447 PAS_3: PAS fold; Int 28.9 29 0.00063 21.1 0.9 29 72-104 6-35 (91)
115 PF13056 DUF3918: Protein of u 27.1 93 0.002 17.9 2.7 22 10-31 4-25 (43)
116 PF14893 PNMA: PNMA 25.7 59 0.0013 26.6 2.4 28 68-95 14-41 (331)
117 PRK09635 sigI RNA polymerase s 24.8 2E+02 0.0043 22.6 5.2 51 67-118 133-183 (290)
118 PRK12527 RNA polymerase sigma 24.6 93 0.002 21.4 3.0 34 66-99 119-152 (159)
119 KOG3219|consensus 24.4 1.3E+02 0.0028 22.9 3.8 28 72-99 151-181 (195)
120 COG1072 CoaA Panthothenate kin 23.8 1.4E+02 0.003 24.0 4.1 37 65-101 21-57 (283)
121 COG0351 ThiD Hydroxymethylpyri 23.5 2E+02 0.0043 22.8 4.8 39 64-103 133-171 (263)
122 PRK09642 RNA polymerase sigma 23.2 99 0.0021 21.3 2.9 34 66-99 120-153 (160)
123 COG0089 RplW Ribosomal protein 23.0 55 0.0012 21.9 1.4 22 77-98 25-46 (94)
124 PF15178 TOM_sub5: Mitochondri 22.9 74 0.0016 18.8 1.8 21 77-97 4-24 (51)
125 COG2846 Regulator of cell morp 22.5 2.7E+02 0.0058 21.5 5.2 41 59-106 28-68 (221)
126 PF10041 DUF2277: Uncharacteri 22.4 2.3E+02 0.005 18.4 5.8 25 76-100 7-31 (78)
127 PF00076 RRM_1: RNA recognitio 22.2 70 0.0015 18.2 1.7 21 78-98 4-24 (70)
128 PRK09645 RNA polymerase sigma 21.8 1E+02 0.0023 21.4 2.8 33 67-99 133-165 (173)
129 PF02042 RWP-RK: RWP-RK domain 21.5 94 0.002 18.5 2.1 25 68-96 15-39 (52)
130 PF11384 DUF3188: Protein of u 21.5 1.2E+02 0.0027 17.7 2.6 22 9-30 23-44 (49)
131 PRK12511 RNA polymerase sigma 20.9 1.5E+02 0.0034 21.2 3.6 40 66-105 125-167 (182)
132 PF04355 SmpA_OmlA: SmpA / Oml 20.7 98 0.0021 18.7 2.2 19 65-83 12-30 (71)
133 TIGR03180 UraD_2 OHCU decarbox 20.5 1.1E+02 0.0025 22.0 2.8 11 109-119 94-104 (158)
134 PRK12523 RNA polymerase sigma 20.3 97 0.0021 21.7 2.4 32 66-97 133-164 (172)
135 PF08951 EntA_Immun: Enterocin 20.3 1.7E+02 0.0037 17.4 3.2 24 100-123 15-38 (75)
136 CHL00168 pbsA heme oxygenase; 20.2 2.6E+02 0.0057 21.6 4.9 16 85-100 164-179 (238)
137 TIGR03164 UHCUDC OHCU decarbox 20.2 1.4E+02 0.0031 21.4 3.3 11 109-119 94-104 (157)
138 CHL00030 rpl23 ribosomal prote 20.1 84 0.0018 20.9 1.9 22 77-98 23-44 (93)
No 1
>KOG0723|consensus
Probab=99.97 E-value=1.6e-30 Score=176.65 Aligned_cols=106 Identities=61% Similarity=0.978 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCChhhhhhhcccccCCCCCCCCHHHHHHHhCCCCCCCHHHHHHH
Q psy5624 13 TAILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEA 92 (125)
Q Consensus 13 ~~ii~gl~v~~~~~~~ra~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~a 92 (125)
++|++|++|+++++.||++++-+..+- ++++..+. ....++||+|+|++.||+.||.+||||+++.+.+.||++
T Consensus 3 ~~i~~G~gvaa~a~ag~~gl~~~~~~~----qa~~~~~~--~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~Kikea 76 (112)
T KOG0723|consen 3 SPIIAGLGVAALAFAGRYGLWMKTLAK----QAFKTLPK--GPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKEA 76 (112)
T ss_pred hhHHHhHHHHHHHHhchhhhhchhHHH----HHHHHcCC--CcchhhhhhcccccccchHHHHHHhCCCccccHHHHHHH
Confidence 477999999999999999999333222 33444443 333568999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q psy5624 93 HKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 93 yr~l~~~~HPDkggs~~~~~~i~~Aye~L~~~ 124 (125)
||++|..||||+|||||++++|||||++|+..
T Consensus 77 HrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 77 HRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999864
No 2
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=155.39 Aligned_cols=106 Identities=35% Similarity=0.450 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCChhhhhhhcccc----cCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHH
Q psy5624 18 GLGLAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYY----KGGFEPKMTKREASLILGVSQSANRMKIKEAH 93 (125)
Q Consensus 18 gl~v~~~~~~~ra~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~ay 93 (125)
.+++.++.+++|+++++|++.........-.-.++....-+.|+ -.+|+..|+.+|||+||||+++++.+||+++|
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~~eIkkaY 86 (116)
T PTZ00100 7 ALTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASKERIREAH 86 (116)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 38888899999999999986543211000000100011122222 56899999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Q psy5624 94 KRIITLNHPDRGGSPYLAAKINEAKDLLEQ 123 (125)
Q Consensus 94 r~l~~~~HPDkggs~~~~~~i~~Aye~L~~ 123 (125)
|+|+++||||++||++.+++|++|||+|.+
T Consensus 87 RrLa~~~HPDkgGs~~~~~kIneAyevL~k 116 (116)
T PTZ00100 87 KQLMLRNHPDNGGSTYIASKVNEAKDLLLK 116 (116)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999974
No 3
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=99.93 E-value=2.7e-26 Score=161.84 Aligned_cols=109 Identities=29% Similarity=0.305 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCChhhhhhhcccccCCCCCCCCHHHHHHHhCCCCCCCHHHH
Q psy5624 10 CASTAILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKI 89 (125)
Q Consensus 10 ma~~~ii~gl~v~~~~~~~ra~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~I 89 (125)
||. .||++++|+|+.++||+|++||+++....+.+...... ...+.... .....||.+||++||||++..++++|
T Consensus 1 Ma~-riiaqiiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~---a~~~~~a~-~~~~~Mtl~EA~~ILnv~~~~~~eeI 75 (127)
T PF03656_consen 1 MAK-RIIAQIIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQN---ASARGAAA-SNSKGMTLDEARQILNVKEELSREEI 75 (127)
T ss_dssp -------------------------------------------------------------HHHHHHHHT--G--SHHHH
T ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccchhHH-hhcCCCCHHHHHHHcCCCCccCHHHH
Confidence 565 46789999999999999999999987433222211110 00111111 22348999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Q psy5624 90 KEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQ 123 (125)
Q Consensus 90 k~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L~~ 123 (125)
.++|++|+..|+|++|||+|+++||.+|+|+|+.
T Consensus 76 ~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 76 QKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQ 109 (127)
T ss_dssp HHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999974
No 4
>KOG3442|consensus
Probab=99.89 E-value=2.3e-22 Score=139.90 Aligned_cols=108 Identities=24% Similarity=0.313 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCChhhhhhhcccccCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHH
Q psy5624 14 AILTGLGLAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAH 93 (125)
Q Consensus 14 ~ii~gl~v~~~~~~~ra~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~ay 93 (125)
..+++++|+|++++||+|++||+++..+..++......+ ..+..-........||++||++||||++..++++|.++|
T Consensus 3 R~~aqiIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~--k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~y 80 (132)
T KOG3442|consen 3 RYLAQIIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAG--KSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRY 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHH
Confidence 357899999999999999999999877665544332211 011111111223459999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Q psy5624 94 KRIITLNHPDRGGSPYLAAKINEAKDLLEQ 123 (125)
Q Consensus 94 r~l~~~~HPDkggs~~~~~~i~~Aye~L~~ 123 (125)
.+|+..|.|.+|||+|+++||.+|+|+|+.
T Consensus 81 ehLFevNdkskGGSFYLQSKVfRAkErld~ 110 (132)
T KOG3442|consen 81 EHLFEVNDKSKGGSFYLQSKVFRAKERLDE 110 (132)
T ss_pred HHHHhccCcccCcceeehHHHHHHHHHHHH
Confidence 999999999999999999999999999974
No 5
>PHA03102 Small T antigen; Reviewed
Probab=99.61 E-value=1.3e-15 Score=110.62 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQSA--NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~~--~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L~~~ 124 (125)
.+|++++|||++++ |.++||++||++++.+|||+||+++.+++||+||++|.++
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~ 59 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRES 59 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhH
Confidence 57999999999999 9999999999999999999999999999999999999874
No 6
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.5e-16 Score=124.41 Aligned_cols=55 Identities=36% Similarity=0.481 Sum_probs=49.7
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhhcC
Q psy5624 70 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 70 ~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-s---~~~~~~i~~Aye~L~~~ 124 (125)
...+.|+||||+.++|.+|||+|||+|+++||||++. + .++|++|++|||+|+++
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~ 60 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCH
Confidence 3455689999999999999999999999999999986 4 58999999999999985
No 7
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.57 E-value=6.7e-15 Score=89.99 Aligned_cols=52 Identities=31% Similarity=0.402 Sum_probs=48.2
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-----SPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-----s~~~~~~i~~Aye~L~~~ 124 (125)
++|+||||+++++.++|+++|+++++.+|||+++ ..+.+.+|++||++|.++
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999999999987 458999999999999876
No 8
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.56 E-value=8.2e-15 Score=88.04 Aligned_cols=50 Identities=32% Similarity=0.393 Sum_probs=46.5
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhc
Q psy5624 74 ASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQ 123 (125)
Q Consensus 74 A~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~ 123 (125)
.|++|||+++++.++|+++|++|++.+|||++++ ...+.+|++||++|.+
T Consensus 2 ~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 2 YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6799999999999999999999999999999874 6899999999999974
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.55 E-value=9.7e-15 Score=120.66 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=55.4
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q psy5624 65 FEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 65 ~~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L~~~ 124 (125)
....|...+.|+||||++++|.+|||+|||+|++++|||++++++.|++|++||++|.+.
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~ 80 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDP 80 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccH
Confidence 445666789999999999999999999999999999999999999999999999999874
No 10
>KOG0713|consensus
Probab=99.49 E-value=3e-14 Score=113.80 Aligned_cols=53 Identities=28% Similarity=0.414 Sum_probs=48.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
++-|+||||+.+++..|||+|||+|++++|||||.+ .+.|++|+.|||+|+++
T Consensus 16 rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDp 72 (336)
T KOG0713|consen 16 RDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDP 72 (336)
T ss_pred CCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCH
Confidence 455699999999999999999999999999999864 38999999999999974
No 11
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.49 E-value=1.4e-13 Score=85.36 Aligned_cols=52 Identities=35% Similarity=0.505 Sum_probs=47.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCH----HHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDR-GGSP----YLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDk-ggs~----~~~~~i~~Aye~L~~~ 124 (125)
++|+||||+++++.++|+++|+++++.+|||+ .++. +.+..|++||++|.+.
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~ 57 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDP 57 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCH
Confidence 47899999999999999999999999999999 4556 7999999999999863
No 12
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=9e-14 Score=113.25 Aligned_cols=56 Identities=32% Similarity=0.469 Sum_probs=49.9
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhhcC
Q psy5624 69 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 69 m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg---s~~~~~~i~~Aye~L~~~ 124 (125)
|+..+.|+||||+++++.+|||++||+|++++|||++. ..+.|++|++|||+|+++
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~ 59 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDK 59 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCH
Confidence 44457789999999999999999999999999999974 348899999999999875
No 13
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.43 E-value=4.1e-13 Score=105.22 Aligned_cols=58 Identities=33% Similarity=0.507 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-CH-------HHHHHHHHHHHHhhcC
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRG---G-SP-------YLAAKINEAKDLLEQS 124 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkg---g-s~-------~~~~~i~~Aye~L~~~ 124 (125)
..++.++||++|||++++|.++||++||+|++++|||+. | ++ +.+++|++||++|++.
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999999993 2 22 6899999999999875
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.5e-13 Score=107.31 Aligned_cols=56 Identities=34% Similarity=0.427 Sum_probs=50.0
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 69 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 69 m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
|+..+.|+||||++++|.+|||++||+|++++|||++.+ .+.|++|++||++|+++
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~ 59 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDP 59 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCH
Confidence 344578899999999999999999999999999999864 47899999999999874
No 15
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.2e-13 Score=110.86 Aligned_cols=53 Identities=28% Similarity=0.321 Sum_probs=47.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-s---~~~~~~i~~Aye~L~~~ 124 (125)
.+.|+||||++++|.+|||+|||+|++++|||++. + .+.|++|++|||+|.++
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~ 59 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDE 59 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccH
Confidence 35679999999999999999999999999999975 3 47899999999999875
No 16
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.2e-13 Score=110.93 Aligned_cols=56 Identities=34% Similarity=0.435 Sum_probs=49.8
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhhcC
Q psy5624 69 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 69 m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-s---~~~~~~i~~Aye~L~~~ 124 (125)
|+..+.|+||||+++++.+|||++||+|++++|||++. + .+.|++|++|||+|+++
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccH
Confidence 34457889999999999999999999999999999975 2 47999999999999874
No 17
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=4.1e-13 Score=109.36 Aligned_cols=54 Identities=28% Similarity=0.378 Sum_probs=48.8
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
..+.|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++|||+|.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~ 59 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDP 59 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcH
Confidence 3577899999999999999999999999999999754 36899999999999875
No 18
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=5.4e-13 Score=109.36 Aligned_cols=53 Identities=28% Similarity=0.355 Sum_probs=48.8
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-s---~~~~~~i~~Aye~L~~~ 124 (125)
.+.|+||||+++++.+|||++||+|++++|||+++ + .+.|++|++||++|.++
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~ 65 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDP 65 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcch
Confidence 57789999999999999999999999999999975 3 48899999999999985
No 19
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=6.4e-13 Score=108.05 Aligned_cols=54 Identities=37% Similarity=0.471 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs-----~~~~~~i~~Aye~L~~~ 124 (125)
..+.|+||||+++++.+|||+|||+|++++|||++.. .+.|++|++|||+|++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~ 61 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcCh
Confidence 3567899999999999999999999999999999742 37899999999999875
No 20
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=6.7e-13 Score=107.91 Aligned_cols=55 Identities=33% Similarity=0.450 Sum_probs=49.0
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhhcC
Q psy5624 70 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 70 ~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-s---~~~~~~i~~Aye~L~~~ 124 (125)
...+.|+||||+++++.+|||++||+|++++|||+++ + .+.|++|++||++|.+.
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcch
Confidence 3457889999999999999999999999999999975 3 36899999999999874
No 21
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=8e-13 Score=107.44 Aligned_cols=53 Identities=30% Similarity=0.433 Sum_probs=48.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
.+.|+||||+++++.+|||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDD 59 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 467899999999999999999999999999999753 37899999999999975
No 22
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=7.6e-13 Score=108.04 Aligned_cols=54 Identities=28% Similarity=0.309 Sum_probs=49.0
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
.++.|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|.+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDP 59 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCH
Confidence 3577899999999999999999999999999999754 57899999999999874
No 23
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=8.3e-13 Score=107.66 Aligned_cols=55 Identities=33% Similarity=0.428 Sum_probs=49.3
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 70 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 70 ~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
...+.|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|++.
T Consensus 2 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (376)
T PRK14280 2 AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDD 59 (376)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccH
Confidence 33578899999999999999999999999999999753 58999999999999874
No 24
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=9.1e-13 Score=107.06 Aligned_cols=56 Identities=32% Similarity=0.461 Sum_probs=49.9
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 69 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 69 m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
|...+.|+||||+++++.+||+++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~ 60 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccH
Confidence 444678899999999999999999999999999999763 37899999999999874
No 25
>KOG0712|consensus
Probab=99.35 E-value=7.5e-13 Score=106.39 Aligned_cols=50 Identities=30% Similarity=0.401 Sum_probs=47.1
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhhcC
Q psy5624 75 SLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-YLAAKINEAKDLLEQS 124 (125)
Q Consensus 75 ~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~-~~~~~i~~Aye~L~~~ 124 (125)
|+||||+++++.+|||++||+|+++|||||+.+. ++|++|.+|||+|+++
T Consensus 7 y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ 57 (337)
T KOG0712|consen 7 YDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDP 57 (337)
T ss_pred ceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 5899999999999999999999999999998765 9999999999999984
No 26
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.1e-12 Score=106.95 Aligned_cols=55 Identities=29% Similarity=0.417 Sum_probs=49.0
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 70 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 70 ~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
+..+.|+||||+++++.++||+|||+|++++|||++.+ .+.|++|++||++|.++
T Consensus 2 ~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (373)
T PRK14301 2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60 (373)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcch
Confidence 34577899999999999999999999999999999753 36899999999999875
No 27
>PHA02624 large T antigen; Provisional
Probab=99.34 E-value=2.3e-12 Score=110.38 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=51.4
Q ss_pred HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQSA--NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~~--~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L~~~ 124 (125)
.+++|++|||++++ +.++||++||++++++|||+||+++.|++|++||++|.+.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~ 65 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEG 65 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcH
Confidence 46899999999999 9999999999999999999999999999999999999863
No 28
>KOG0721|consensus
Probab=99.34 E-value=1.6e-12 Score=98.75 Aligned_cols=55 Identities=31% Similarity=0.414 Sum_probs=50.4
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHhhcCC
Q psy5624 71 KREASLILGVSQSANRMKIKEAHKRIITLNHPDR----GGSPYLAAKINEAKDLLEQSK 125 (125)
Q Consensus 71 ~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDk----ggs~~~~~~i~~Aye~L~~~k 125 (125)
.-+.++||||+++++..|||++||+|.+++|||| +|+.+.+..|+.||+.|.+.+
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~ 156 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKK 156 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchh
Confidence 3467899999999999999999999999999999 678899999999999998754
No 29
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.2e-12 Score=106.77 Aligned_cols=54 Identities=30% Similarity=0.428 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg---s~~~~~~i~~Aye~L~~~ 124 (125)
..+.|++|||+++++.+|||++||+|++++|||++. ..+.|++|++|||+|.+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~ 60 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDD 60 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchh
Confidence 346789999999999999999999999999999974 458999999999999875
No 30
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=1.5e-12 Score=106.26 Aligned_cols=53 Identities=30% Similarity=0.397 Sum_probs=48.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
.+.|+||||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|.+.
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 60 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDA 60 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcch
Confidence 477899999999999999999999999999999754 47899999999999875
No 31
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=1.1e-12 Score=107.02 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=47.7
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP---YLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~---~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++.+|||++||+|++++|||+++++ +.|++|++|||+|.+.
T Consensus 4 d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~ 58 (378)
T PRK14278 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDP 58 (378)
T ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchh
Confidence 567999999999999999999999999999998764 5899999999999874
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.33 E-value=1.7e-12 Score=103.17 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=49.8
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhhcC
Q psy5624 69 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 69 m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg---s~~~~~~i~~Aye~L~~~ 124 (125)
|+..+.|++|||+++++.+|||++||+|++++|||++. ....|++|++||++|++.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~ 59 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDE 59 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhH
Confidence 33457889999999999999999999999999999975 458999999999999864
No 33
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=2.2e-12 Score=105.66 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=48.5
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-s---~~~~~~i~~Aye~L~~~ 124 (125)
.+.|+||||+++++.+|||+|||+|++++|||++. + .+.|++|++||++|.+.
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 65 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE 65 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch
Confidence 57889999999999999999999999999999975 2 47999999999999875
No 34
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=1.7e-12 Score=105.90 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=48.2
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
.+.|+||||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|.++
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 467899999999999999999999999999999753 37899999999999875
No 35
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=2.8e-12 Score=105.27 Aligned_cols=53 Identities=32% Similarity=0.470 Sum_probs=48.2
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
.+.|+||||+++++.+|||++||+|++++|||++++ .+.|++|++|||+|.+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSND 59 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhh
Confidence 367899999999999999999999999999999763 47899999999999874
No 36
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=2.1e-12 Score=105.66 Aligned_cols=53 Identities=32% Similarity=0.434 Sum_probs=48.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-s---~~~~~~i~~Aye~L~~~ 124 (125)
.+.|+||||+++++.+||+++||+|++++|||++. + .+.|++|++|||+|++.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 61 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDP 61 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCH
Confidence 46789999999999999999999999999999975 2 36899999999999875
No 37
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=5.5e-12 Score=103.07 Aligned_cols=52 Identities=35% Similarity=0.416 Sum_probs=47.8
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++.++||++||+|++++|||++.+ .+.|++|++||++|++.
T Consensus 4 d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~ 58 (382)
T PRK14291 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDP 58 (382)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 56799999999999999999999999999999854 57899999999999875
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=5.5e-12 Score=102.76 Aligned_cols=53 Identities=30% Similarity=0.418 Sum_probs=47.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
.+.|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|.+.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~ 58 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDE 58 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhH
Confidence 467899999999999999999999999999999753 47899999999999864
No 39
>KOG0716|consensus
Probab=99.27 E-value=9.4e-12 Score=97.13 Aligned_cols=56 Identities=25% Similarity=0.413 Sum_probs=50.8
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 69 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 69 m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
....+-|.+||++++++.++||++||+|++++|||++|+ +..|.+||.||++|.+.
T Consensus 28 ~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~ 87 (279)
T KOG0716|consen 28 VIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDP 87 (279)
T ss_pred cchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcCh
Confidence 346778999999999999999999999999999999875 48999999999999874
No 40
>KOG0717|consensus
Probab=99.25 E-value=1e-11 Score=102.71 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=50.4
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhhcC
Q psy5624 70 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 70 ~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs-----~~~~~~i~~Aye~L~~~ 124 (125)
.....|+||||..++++++|+++||+|++++|||++++ .+.|+.|+.||++|+++
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp 65 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDP 65 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcCh
Confidence 34678999999999999999999999999999999875 47899999999999986
No 41
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.25 E-value=8.7e-12 Score=100.73 Aligned_cols=51 Identities=35% Similarity=0.449 Sum_probs=46.8
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 74 ASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 74 A~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
.|+||||+++++.++||++||+|++++|||++.+ .+.|++|++||++|++.
T Consensus 2 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 55 (354)
T TIGR02349 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDP 55 (354)
T ss_pred hHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhCh
Confidence 4799999999999999999999999999999853 47899999999999875
No 42
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=9.7e-12 Score=101.88 Aligned_cols=52 Identities=29% Similarity=0.431 Sum_probs=47.3
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|.+.
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 57 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA 57 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH
Confidence 45799999999999999999999999999999763 47899999999999874
No 43
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.4e-11 Score=100.20 Aligned_cols=52 Identities=35% Similarity=0.436 Sum_probs=47.8
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~ 57 (371)
T PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDA 57 (371)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcch
Confidence 46899999999999999999999999999999865 47899999999999875
No 44
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.1e-11 Score=100.67 Aligned_cols=52 Identities=29% Similarity=0.363 Sum_probs=47.3
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs-----~~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|++.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (365)
T PRK14290 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60 (365)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcCh
Confidence 56799999999999999999999999999999753 27899999999999874
No 45
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.1e-11 Score=101.31 Aligned_cols=54 Identities=31% Similarity=0.377 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-S---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-s---~~~~~~i~~Aye~L~~~ 124 (125)
..+.|++|||+++++.+||+++||+|++++|||++. + .+.|++|++||++|.+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~ 61 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence 357789999999999999999999999999999975 3 37899999999999874
No 46
>KOG0718|consensus
Probab=99.18 E-value=4.5e-11 Score=99.24 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=50.5
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhhcCC
Q psy5624 70 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-------YLAAKINEAKDLLEQSK 125 (125)
Q Consensus 70 ~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~-------~~~~~i~~Aye~L~~~k 125 (125)
...|-|.+|||++++|.+||+++||++++.+||||.-|+ +.|++|.+|||+|+|++
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~ 69 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQ 69 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChH
Confidence 345889999999999999999999999999999997654 68999999999999863
No 47
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=3.6e-11 Score=98.03 Aligned_cols=52 Identities=31% Similarity=0.406 Sum_probs=47.5
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++.++|+++||+|++++|||++.+ .+.|++|++||++|.+.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~ 58 (374)
T PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDP 58 (374)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhch
Confidence 56799999999999999999999999999999753 58899999999999874
No 48
>KOG0715|consensus
Probab=99.17 E-value=3.5e-11 Score=95.32 Aligned_cols=58 Identities=28% Similarity=0.392 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhhcC
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg---s~~~~~~i~~Aye~L~~~ 124 (125)
..++.++.|+||||+.+++..|||.+|++|++++|||.+- ....|++|.+|||+|.+.
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~ 98 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDE 98 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCH
Confidence 3444558999999999999999999999999999999864 458999999999999874
No 49
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.7e-10 Score=84.24 Aligned_cols=54 Identities=33% Similarity=0.423 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH----HHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-SP----YLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-s~----~~~~~i~~Aye~L~~~ 124 (125)
..+.|+||||+++++.+||+++||++++++|||+++ ++ +.|+.|++||++|.+.
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~ 63 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDP 63 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCH
Confidence 356789999999999999999999999999999965 33 8899999999999874
No 50
>KOG0691|consensus
Probab=99.08 E-value=1.7e-10 Score=91.71 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=48.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGG-SP---YLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg-s~---~~~~~i~~Aye~L~~~ 124 (125)
.|.|.|||++++++..+|+++||..++.+|||||. +| +.|+++.+||++|.+.
T Consensus 5 ~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~ 61 (296)
T KOG0691|consen 5 TDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDE 61 (296)
T ss_pred chHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence 57789999999999999999999999999999975 44 7899999999999874
No 51
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.03 E-value=2.5e-10 Score=101.58 Aligned_cols=55 Identities=25% Similarity=0.178 Sum_probs=49.6
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 70 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 70 ~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
...+.|+||||+++++..+||++||+|++++|||++.+ ...|++|++||++|.++
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp 628 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDI 628 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCH
Confidence 34688999999999999999999999999999999753 47899999999999875
No 52
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.01 E-value=3.8e-10 Score=98.48 Aligned_cols=52 Identities=35% Similarity=0.607 Sum_probs=47.1
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP---YLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~---~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++.++||++||+|++++|||++++. ..|++|++||++|++.
T Consensus 3 DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP 57 (871)
T TIGR03835 3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNP 57 (871)
T ss_pred ChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCH
Confidence 567999999999999999999999999999997653 5789999999999874
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.97 E-value=1.2e-09 Score=80.42 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=44.5
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGGSP-------YLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~--~~~~~Ik~ayr~l~~~~HPDkggs~-------~~~~~i~~Aye~L~~~ 124 (125)
+.|++|||+++ ++..+|+++||++.+++|||+..+. ..+..||+||++|+++
T Consensus 3 ~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp 63 (166)
T PRK01356 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDA 63 (166)
T ss_pred CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 35799999987 7899999999999999999996543 2357999999999875
No 54
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.97 E-value=1.2e-09 Score=80.62 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=43.5
Q ss_pred HHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhhcC
Q psy5624 74 ASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGG--SP-------YLAAKINEAKDLLEQS 124 (125)
Q Consensus 74 A~~iLgl~~~--~~~~~Ik~ayr~l~~~~HPDkgg--s~-------~~~~~i~~Aye~L~~~ 124 (125)
.|++|||++. ++..+|+++||++.+++|||+.. ++ ..+..||+||++|+++
T Consensus 3 yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp 64 (171)
T PRK05014 3 YFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHP 64 (171)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 5799999996 68899999999999999999943 22 3567899999999875
No 55
>KOG0722|consensus
Probab=98.93 E-value=7.3e-10 Score=86.46 Aligned_cols=53 Identities=30% Similarity=0.480 Sum_probs=49.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
+++|++|||+.+++..||.++||+|++++|||++.+ ..+|.+|..|||+|.++
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~ 88 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDN 88 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccch
Confidence 899999999999999999999999999999999654 47899999999999875
No 56
>KOG0719|consensus
Probab=98.91 E-value=1.5e-09 Score=83.48 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=47.1
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHhhc
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGG------SPYLAAKINEAKDLLEQ 123 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg------s~~~~~~i~~Aye~L~~ 123 (125)
+.|+||||..+++..+|+++|++|.+++|||++. ..+.|+.++.||.+|.+
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsD 71 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSD 71 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhH
Confidence 7899999999999999999999999999999973 35789999999999965
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.89 E-value=3e-09 Score=78.94 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=44.5
Q ss_pred HHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGG--SP-------YLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~--~~~~~Ik~ayr~l~~~~HPDkgg--s~-------~~~~~i~~Aye~L~~~ 124 (125)
.+.|++|||+++ .+..+|+++||+|.+++|||+.. +. ..++.||+||++|+++
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p 69 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDP 69 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 467799999986 68899999999999999999953 22 2357999999999875
No 58
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.88 E-value=3.1e-09 Score=78.70 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=44.0
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGG--S-------PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~--~~~~~Ik~ayr~l~~~~HPDkgg--s-------~~~~~~i~~Aye~L~~~ 124 (125)
..+++||+++. .+..+|+++||+|.+++|||+.. + ...+..||+||++|+++
T Consensus 5 ~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p 67 (173)
T PRK00294 5 CHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSP 67 (173)
T ss_pred ChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 45699999997 67899999999999999999943 2 24578999999999875
No 59
>KOG1789|consensus
Probab=98.76 E-value=1.8e-08 Score=90.69 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhh
Q psy5624 66 EPKMTKREASLILGVSQS----ANRMKIKEAHKRIITLNHPDRGGS-PYLAAKINEAKDLLE 122 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~----~~~~~Ik~ayr~l~~~~HPDkggs-~~~~~~i~~Aye~L~ 122 (125)
...|+.++||+||+++-+ .++++||++|++|+.++|||||.. .+.|.+||.|||.|.
T Consensus 1275 P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1275 PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 357899999999999764 355899999999999999999874 589999999999997
No 60
>KOG0720|consensus
Probab=98.75 E-value=8e-09 Score=85.73 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=48.8
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
.+||.+|||+++++.++||+.||+++...||||+-. .+.|+++..|||+|.++
T Consensus 235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~ 290 (490)
T KOG0720|consen 235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDS 290 (490)
T ss_pred CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcch
Confidence 479999999999999999999999999999999865 48899999999999764
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.56 E-value=1.6e-07 Score=69.54 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=44.1
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCC--CCH-------HHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQS--ANRMKIKEAHKRIITLNHPDRG--GSP-------YLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~--~~~~~Ik~ayr~l~~~~HPDkg--gs~-------~~~~~i~~Aye~L~~~ 124 (125)
+.+++||+++. .+...++++|++|.+.+|||+- .++ +....||+||.+|+++
T Consensus 3 nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdP 65 (173)
T PRK01773 3 NPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDP 65 (173)
T ss_pred ChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 35689999987 8999999999999999999993 232 4568899999999875
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.54 E-value=3e-07 Score=76.80 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=45.8
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhhcCC
Q psy5624 74 ASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---------PYLAAKINEAKDLLEQSK 125 (125)
Q Consensus 74 A~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---------~~~~~~i~~Aye~L~~~k 125 (125)
.|+|||++.+.+..+||++||+|..++||||-.. .+....|+.||+.|.+.|
T Consensus 100 PyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k 160 (610)
T COG5407 100 PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160 (610)
T ss_pred hHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5799999999999999999999999999999543 367888999999997643
No 63
>KOG0624|consensus
Probab=98.54 E-value=1e-07 Score=77.77 Aligned_cols=53 Identities=28% Similarity=0.379 Sum_probs=46.8
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-------YLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~-------~~~~~i~~Aye~L~~~ 124 (125)
++.|+||||..++++.||.++||+++.+||||.--+. ..|..|..|+|+|.++
T Consensus 394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~ 453 (504)
T KOG0624|consen 394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP 453 (504)
T ss_pred chHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH
Confidence 5677999999999999999999999999999985554 3678899999999874
No 64
>KOG1150|consensus
Probab=98.54 E-value=8.6e-08 Score=72.62 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=44.0
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhhc
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-----YLAAKINEAKDLLEQ 123 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~-----~~~~~i~~Aye~L~~ 123 (125)
++|++|.+.|+.+.++|+++||+|.+..|||+|.+. ..|.-|..||..|.+
T Consensus 54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n 109 (250)
T KOG1150|consen 54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLEN 109 (250)
T ss_pred ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999999864 345667888887765
No 65
>KOG0714|consensus
Probab=98.49 E-value=9.5e-08 Score=72.89 Aligned_cols=53 Identities=32% Similarity=0.482 Sum_probs=45.7
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-----YLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~-----~~~~~i~~Aye~L~~~ 124 (125)
.+.+.||+|..+++.++|+++|+++++++|||++.+. ..+.++.+||++|.+.
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~ 60 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDP 60 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCH
Confidence 4678999999999899999999999999999996544 3477888999988764
No 66
>KOG0568|consensus
Probab=98.48 E-value=3.1e-07 Score=71.24 Aligned_cols=51 Identities=31% Similarity=0.409 Sum_probs=46.7
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHH-Hh
Q psy5624 71 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKD-LL 121 (125)
Q Consensus 71 ~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg---s~~~~~~i~~Aye-~L 121 (125)
..|++.||||.++++.++|+.+|..|++++|||.|. +...|.+|.+||. +|
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvl 100 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVL 100 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999975 5689999999998 44
No 67
>KOG0550|consensus
Probab=98.42 E-value=2.7e-07 Score=76.32 Aligned_cols=53 Identities=30% Similarity=0.495 Sum_probs=47.6
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CC----HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkg-gs----~~~~~~i~~Aye~L~~~ 124 (125)
.+.|.|||+...++.++|+++||++.+.||||++ |+ ..+|++|-+||.+|.+.
T Consensus 373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~ 430 (486)
T KOG0550|consen 373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDP 430 (486)
T ss_pred hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCH
Confidence 4678999999999999999999999999999995 55 36899999999999874
No 68
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.38 E-value=6.3e-07 Score=65.34 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC--CC-------HHHHHHHHHHHHHhhcC
Q psy5624 84 ANRMKIKEAHKRIITLNHPDRG--GS-------PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 84 ~~~~~Ik~ayr~l~~~~HPDkg--gs-------~~~~~~i~~Aye~L~~~ 124 (125)
.+..+|+++||+|.+++|||+. .+ ...++.||+||++|+++
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p 52 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDP 52 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCCh
Confidence 4788999999999999999983 22 25678999999999875
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0001 Score=54.34 Aligned_cols=50 Identities=30% Similarity=0.450 Sum_probs=42.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC---CCCH--------HHHHHHHHHHHHh
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDR---GGSP--------YLAAKINEAKDLL 121 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDk---ggs~--------~~~~~i~~Aye~L 121 (125)
.+++.+||++...+..+|+++|+.++..+|||+ -|.+ +.++++++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999998 3443 4567788888764
No 70
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00031 Score=55.84 Aligned_cols=54 Identities=31% Similarity=0.476 Sum_probs=46.4
Q ss_pred HHHHHHhCCCC---CCCHHHHHHHHHHHHHHhCCCC---CC---CHHHHHHHHHHHHHhhcCC
Q psy5624 72 REASLILGVSQ---SANRMKIKEAHKRIITLNHPDR---GG---SPYLAAKINEAKDLLEQSK 125 (125)
Q Consensus 72 ~eA~~iLgl~~---~~~~~~Ik~ayr~l~~~~HPDk---gg---s~~~~~~i~~Aye~L~~~k 125 (125)
.+-|.+|||+. .+++.+|.+++++.+..+|||+ || ..+.|.-|..|||+|.+++
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~ 105 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRK 105 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHH
Confidence 56788999976 4788999999999999999998 44 4688999999999998753
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.19 E-value=0.0022 Score=39.47 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy5624 68 KMTKREASLILGVSQSANRMKIKEAHKRIIT 98 (125)
Q Consensus 68 ~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~ 98 (125)
.|+.++||++||++++.+.+.|-..|+....
T Consensus 1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999999999999888
No 72
>KOG0431|consensus
Probab=96.82 E-value=0.0013 Score=55.35 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC-CC---C---HHHHHHHHHHHH
Q psy5624 83 SANRMKIKEAHKRIITLNHPDR-GG---S---PYLAAKINEAKD 119 (125)
Q Consensus 83 ~~~~~~Ik~ayr~l~~~~HPDk-gg---s---~~~~~~i~~Aye 119 (125)
-.+.+.||++||+-.+..|||| .+ + .|++.+|+.++.
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~ 442 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALS 442 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHH
Confidence 3589999999999999999999 22 2 377777776654
No 73
>KOG3192|consensus
Probab=93.57 E-value=0.21 Score=36.69 Aligned_cols=52 Identities=31% Similarity=0.345 Sum_probs=39.9
Q ss_pred HHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQ--SANRMKIKEAHKRIITLNHPDRGGS---------PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~--~~~~~~Ik~ayr~l~~~~HPDkggs---------~~~~~~i~~Aye~L~~~ 124 (125)
.-+.+||.+. ..+++.+..-|--..++.|||+-+. .+...+||+||+.|.++
T Consensus 9 ~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~p 71 (168)
T KOG3192|consen 9 RFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDP 71 (168)
T ss_pred HHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhH
Confidence 4458887655 4677788878999999999998331 25678899999999874
No 74
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=0.33 Score=35.64 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHhhc
Q psy5624 85 NRMKIKEAHKRIITLNHPDRGGSP---------YLAAKINEAKDLLEQ 123 (125)
Q Consensus 85 ~~~~Ik~ayr~l~~~~HPDkggs~---------~~~~~i~~Aye~L~~ 123 (125)
+.+.++..|+.+.+.+|||+.++. ..+..+|.||..|++
T Consensus 16 ~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~ 63 (174)
T COG1076 16 DLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKD 63 (174)
T ss_pred HHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHH
Confidence 457788999999999999996542 346678999988875
No 75
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=84.11 E-value=1.5 Score=30.31 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy5624 84 ANRMKIKEAHKRIITLNHPDRGGSPYLAAKIN 115 (125)
Q Consensus 84 ~~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~ 115 (125)
.+..+++.+-|...++.|||-=++.-..+++|
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~N 37 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPEEKQVN 37 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChHHHHhh
Confidence 45678999999999999999744332244554
No 76
>KOG3767|consensus
Probab=78.81 E-value=2.1 Score=34.78 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCHHHHHHHhC------CCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy5624 68 KMTKREASLILG------VSQSANRMKIKEAHKRIITLNHPDRGG 106 (125)
Q Consensus 68 ~m~~~eA~~iLg------l~~~~~~~~Ik~ayr~l~~~~HPDkgg 106 (125)
.-..+||++|+. ++++.+.+++-+|.+..--.+|||.|.
T Consensus 44 ~~~le~ar~iv~~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDTgE 88 (328)
T KOG3767|consen 44 EKKLEEARQIVEDYKAGKVPPGLTDDELWKAKKLYDSTFHPDTGE 88 (328)
T ss_pred HHHHHHHHHHHHhhccCCcCCCCcHHHHHHHHHHHhcccCCCCCC
Confidence 344578888874 455678999999999999999999963
No 77
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=73.87 E-value=4.1 Score=32.86 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHh-----CC-CCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy5624 66 EPKMTKREASLIL-----GV-SQSANRMKIKEAHKRIITLNHPDRGG 106 (125)
Q Consensus 66 ~~~m~~~eA~~iL-----gl-~~~~~~~~Ik~ayr~l~~~~HPDkgg 106 (125)
...-..++|.++| |- +++.+.+|+-++.+..--..|||.|.
T Consensus 24 ~S~~~l~~a~~ll~~~~~g~~~~~~~~~~lw~Ak~l~~Sa~HPDTge 70 (308)
T PF03820_consen 24 ASEAELEEAKELLEDYRAGKVPPGLTDDELWKAKKLYDSAFHPDTGE 70 (308)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhcccCCCCCC
Confidence 3444567888887 32 23358999999999999999999863
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=68.72 E-value=29 Score=22.55 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=21.4
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 75 SLILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 75 ~~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
.+++|++|.++.+||+.+-++.+++.
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfVRKl 31 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFVRKL 31 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHh
Confidence 36899999999999999877666654
No 79
>PF12669 P12: Virus attachment protein p12 family
Probab=57.86 E-value=11 Score=22.97 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHh
Q psy5624 15 ILTGLGLAAVGYA-GRYILKAA 35 (125)
Q Consensus 15 ii~gl~v~~~~~~-~ra~~~a~ 35 (125)
||+.+++++++++ .|.+++..
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~~ 24 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKDK 24 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444433 36666644
No 80
>KOG1573|consensus
Probab=56.14 E-value=23 Score=26.45 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHhC--C---CCCCCHHHHHHHHH--HHHHHhCCCC
Q psy5624 66 EPKMTKREASLILG--V---SQSANRMKIKEAHK--RIITLNHPDR 104 (125)
Q Consensus 66 ~~~m~~~eA~~iLg--l---~~~~~~~~Ik~ayr--~l~~~~HPDk 104 (125)
...|+.-||+++|+ | +|+.+...|.-+|. .-+++.|||+
T Consensus 70 ~~kM~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~ 115 (204)
T KOG1573|consen 70 KMKMTIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDE 115 (204)
T ss_pred hhheeHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCc
Confidence 36799999999997 2 34567778888887 4578899998
No 81
>KOG2070|consensus
Probab=52.55 E-value=6.6 Score=34.06 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhhc
Q psy5624 91 EAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQ 123 (125)
Q Consensus 91 ~ayr~l~~~~HPDkgg---s~~~~~~i~~Aye~L~~ 123 (125)
+--.|.|..+|||+|. +-..|+.+..-++.|++
T Consensus 248 QELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRk 283 (661)
T KOG2070|consen 248 QELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRK 283 (661)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346778899999975 33455666555555544
No 82
>PF12728 HTH_17: Helix-turn-helix domain
Probab=52.00 E-value=12 Score=21.25 Aligned_cols=15 Identities=47% Similarity=0.733 Sum_probs=12.9
Q ss_pred CCHHHHHHHhCCCCC
Q psy5624 69 MTKREASLILGVSQS 83 (125)
Q Consensus 69 m~~~eA~~iLgl~~~ 83 (125)
||.+|+.++||++..
T Consensus 2 lt~~e~a~~l~is~~ 16 (51)
T PF12728_consen 2 LTVKEAAELLGISRS 16 (51)
T ss_pred CCHHHHHHHHCcCHH
Confidence 688999999999654
No 83
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=51.70 E-value=25 Score=23.31 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHHH
Q psy5624 83 SANRMKIKEAHKRI 96 (125)
Q Consensus 83 ~~~~~~Ik~ayr~l 96 (125)
...+..|+++||+|
T Consensus 77 pl~P~hlreA~rrL 90 (90)
T PF04719_consen 77 PLQPDHLREAYRRL 90 (90)
T ss_dssp S--HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhC
Confidence 56789999999987
No 84
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=46.93 E-value=13 Score=20.18 Aligned_cols=15 Identities=47% Similarity=0.574 Sum_probs=12.9
Q ss_pred CCHHHHHHHhCCCCC
Q psy5624 69 MTKREASLILGVSQS 83 (125)
Q Consensus 69 m~~~eA~~iLgl~~~ 83 (125)
||.+|+.+.||++..
T Consensus 2 lt~~e~a~~lgis~~ 16 (49)
T TIGR01764 2 LTVEEAAEYLGVSKD 16 (49)
T ss_pred CCHHHHHHHHCCCHH
Confidence 688999999999665
No 85
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=46.17 E-value=25 Score=25.36 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=28.8
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5624 65 FEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPD 103 (125)
Q Consensus 65 ~~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPD 103 (125)
+-..||.+|.-++||++++.-...+..+-++|-+-..||
T Consensus 143 ~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~~~~~ 181 (185)
T PRK09649 143 QLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPD 181 (185)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCcc
Confidence 345688899999999988766667777767776655565
No 86
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=45.47 E-value=37 Score=22.98 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=28.8
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhCCCC---------CCCHHH
Q psy5624 76 LILGVSQSANRMKIKEAHKRIITLNHPDR---------GGSPYL 110 (125)
Q Consensus 76 ~iLgl~~~~~~~~Ik~ayr~l~~~~HPDk---------ggs~~~ 110 (125)
..+++.++.+.+++++++++.+...+++. ||||+.
T Consensus 31 ~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n 74 (116)
T TIGR00824 31 GAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYN 74 (116)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 45778888899999999999999987654 788854
No 87
>KOG0724|consensus
Probab=43.47 E-value=35 Score=27.18 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC--------CCHHHHHHHHHHHHHhhc
Q psy5624 84 ANRMKIKEAHKRIITLNHPDRG--------GSPYLAAKINEAKDLLEQ 123 (125)
Q Consensus 84 ~~~~~Ik~ayr~l~~~~HPDkg--------gs~~~~~~i~~Aye~L~~ 123 (125)
++..+++..|+......|||+- .....+.+|.+||+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~ 51 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDD 51 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 4567788888999999999874 234567888999988875
No 88
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=41.36 E-value=42 Score=19.99 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=29.7
Q ss_pred cccccCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy5624 58 SKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRII 97 (125)
Q Consensus 58 ~~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~ 97 (125)
.+||. .....|..|--+.||+++..-.+.++++-++++
T Consensus 15 ~GYfd--~PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 15 LGYFD--VPRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred cCCCC--CCCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34553 335678889999999999888888999988876
No 89
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=40.52 E-value=36 Score=25.56 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCC
Q psy5624 81 SQSANRMKIKEAHKRIITLNHPD 103 (125)
Q Consensus 81 ~~~~~~~~Ik~ayr~l~~~~HPD 103 (125)
+++++.|||++++.++..++--|
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd 23 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD 23 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC
Confidence 46788888888888888888443
No 90
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=37.53 E-value=52 Score=20.67 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=15.5
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHH
Q psy5624 68 KMTKREASLILGVSQSANRMKIKE 91 (125)
Q Consensus 68 ~m~~~eA~~iLgl~~~~~~~~Ik~ 91 (125)
.+|.+|-+++||++.+.+.++-.+
T Consensus 45 gks~eeir~~fgi~~d~t~eee~~ 68 (78)
T PF01466_consen 45 GKSPEEIRKYFGIENDLTPEEEEE 68 (78)
T ss_dssp TS-HHHHHHHHT---TSSHHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHH
Confidence 468899999999999888766433
No 91
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=36.82 E-value=45 Score=23.77 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRIITL 99 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~ 99 (125)
-..||.+|.-++||++.+.-...+..+.+++...
T Consensus 141 ~~g~s~~EIA~~lgis~~tVk~~l~rAl~~~~~~ 174 (178)
T PRK12529 141 LDGMKQKDIAQALDIALPTVKKYIHQAYVTCLSL 174 (178)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3568889999999998887777777777777554
No 92
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=36.37 E-value=45 Score=23.34 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPD 103 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPD 103 (125)
..++.+|.-++||++++.-...+.++-++|-...-||
T Consensus 127 ~g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 163 (164)
T PRK12547 127 SGFSYEDAAAICGCAVGTIKSRVSRARNRLQELLKVD 163 (164)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577788888888887766666666666666555544
No 93
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=36.24 E-value=69 Score=20.95 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=22.9
Q ss_pred hCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5624 78 LGVSQSA-NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAK 118 (125)
Q Consensus 78 Lgl~~~~-~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Ay 118 (125)
-|++|+. .-.++-+.|..++..++| +++..+..+.+.|
T Consensus 50 ~g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y 88 (118)
T PF07739_consen 50 EGVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY 88 (118)
T ss_dssp HT--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 4666764 346778888888887765 7777777777665
No 94
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=35.71 E-value=70 Score=20.06 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPD 103 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPD 103 (125)
..+++..||-+.||+++.. ..+--..||+-+++..|.
T Consensus 11 s~~~s~~~Aa~~lG~~~~~-v~~wv~~fR~wll~LDPS 47 (65)
T PF05344_consen 11 SQQISVAQAADRLGTDPGT-VRRWVRMFRQWLLQLDPS 47 (65)
T ss_pred cccccHHHHHHHHCcCHHH-HHHHHHHHHHHHHHcCCC
Confidence 3568889999999998874 344456789999999773
No 95
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=35.64 E-value=33 Score=19.34 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRII 97 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~ 97 (125)
...+|..|.-+.||++.+ .|++..++..
T Consensus 18 ~~~~t~~eIa~~lg~s~~----~V~~~~~~al 45 (50)
T PF04545_consen 18 FEGLTLEEIAERLGISRS----TVRRILKRAL 45 (50)
T ss_dssp TST-SHHHHHHHHTSCHH----HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCcHH----HHHHHHHHHH
Confidence 457899999999999654 5555554443
No 96
>COG2879 Uncharacterized small protein [Function unknown]
Probab=34.99 E-value=35 Score=21.37 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCCCC
Q psy5624 92 AHKRIITLNHPDRGG 106 (125)
Q Consensus 92 ayr~l~~~~HPDkgg 106 (125)
.|-.-++.+|||+-.
T Consensus 27 nYVehmr~~hPd~p~ 41 (65)
T COG2879 27 NYVEHMRKKHPDKPP 41 (65)
T ss_pred HHHHHHHHhCcCCCc
Confidence 477889999999965
No 97
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=34.72 E-value=25 Score=20.02 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=12.0
Q ss_pred CCCCCHHHHHHHhCCCCCC
Q psy5624 66 EPKMTKREASLILGVSQSA 84 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~ 84 (125)
-..||..|.-++||++++.
T Consensus 24 ~~g~s~~eIa~~l~~s~~~ 42 (54)
T PF08281_consen 24 FQGMSYAEIAEILGISEST 42 (54)
T ss_dssp TS---HHHHHHHCTS-HHH
T ss_pred HHCcCHHHHHHHHCcCHHH
Confidence 4568899999999986653
No 98
>KOG3960|consensus
Probab=34.49 E-value=29 Score=27.53 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhc
Q psy5624 109 YLAAKINEAKDLLEQ 123 (125)
Q Consensus 109 ~~~~~i~~Aye~L~~ 123 (125)
...+|||||+|+|+.
T Consensus 128 RRLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHHh
Confidence 467899999999985
No 99
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=34.36 E-value=26 Score=18.07 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHhCCC
Q psy5624 87 MKIKEAHKRIITLNHPD 103 (125)
Q Consensus 87 ~~Ik~ayr~l~~~~HPD 103 (125)
+++-..+++++-..|||
T Consensus 26 ~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 26 EEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHH----------
T ss_pred HHHHHHHHHHhcccccC
Confidence 56777788888888987
No 100
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=34.09 E-value=37 Score=14.56 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=6.7
Q ss_pred HHHHHHHHHHh
Q psy5624 111 AAKINEAKDLL 121 (125)
Q Consensus 111 ~~~i~~Aye~L 121 (125)
+.+|..||+.|
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 45566666655
No 101
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=33.51 E-value=49 Score=18.27 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
..++.+|..+.||++.. .|+...+++....
T Consensus 14 ~~~s~~eia~~l~~s~~----tv~~~~~~~~~~l 43 (57)
T cd06170 14 EGKTNKEIADILGISEK----TVKTHLRNIMRKL 43 (57)
T ss_pred cCCCHHHHHHHHCCCHH----HHHHHHHHHHHHh
Confidence 35788999999998654 5555555555544
No 102
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=33.23 E-value=30 Score=18.54 Aligned_cols=15 Identities=53% Similarity=0.742 Sum_probs=12.4
Q ss_pred CCHHHHHHHhCCCCC
Q psy5624 69 MTKREASLILGVSQS 83 (125)
Q Consensus 69 m~~~eA~~iLgl~~~ 83 (125)
||..|+.+.||+++.
T Consensus 1 ~s~~e~a~~lgvs~~ 15 (49)
T cd04762 1 LTTKEAAELLGVSPS 15 (49)
T ss_pred CCHHHHHHHHCcCHH
Confidence 577899999999654
No 103
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.01 E-value=53 Score=23.24 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHh
Q psy5624 84 ANRMKIKEAHKRIITLNH-PDRGGSPYLAAKINEAKDLL 121 (125)
Q Consensus 84 ~~~~~Ik~ayr~l~~~~H-PDkggs~~~~~~i~~Aye~L 121 (125)
.-..++.++|+.++...| |++.. ..++-.+||=..
T Consensus 48 ~aDa~LN~AY~~ll~~l~~~~~~~---aL~kaQRAWi~f 83 (127)
T COG3755 48 AADAELNKAYKALLKRLQDSPRTK---ALQKAQRAWIAF 83 (127)
T ss_pred HHHHHHHHHHHHHHHHhccChHHH---HHHHHHHHHHHH
Confidence 446789999999999987 66544 466666666443
No 104
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=31.79 E-value=50 Score=24.16 Aligned_cols=11 Identities=27% Similarity=0.006 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH
Q psy5624 109 YLAAKINEAKD 119 (125)
Q Consensus 109 ~~~~~i~~Aye 119 (125)
..+.++|.+|+
T Consensus 99 ~~l~~lN~~Y~ 109 (166)
T PRK13798 99 AALAAGNRAYE 109 (166)
T ss_pred HHHHHHHHHHH
Confidence 46777888887
No 105
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=30.94 E-value=58 Score=17.79 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
..++..|..+.||++.. .|+...+++..+.
T Consensus 17 ~g~s~~eia~~l~is~~----tv~~~~~~~~~kl 46 (58)
T smart00421 17 EGLTNKEIAERLGISEK----TVKTHLSNIMRKL 46 (58)
T ss_pred cCCCHHHHHHHHCCCHH----HHHHHHHHHHHHH
Confidence 34788898899998554 4444444444443
No 106
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=30.86 E-value=73 Score=25.96 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=24.0
Q ss_pred CCHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy5624 69 MTKREASLILG-----VSQSANRMKIKEAHKRIITLNHPDRGG 106 (125)
Q Consensus 69 m~~~eA~~iLg-----l~~~~~~~~Ik~ayr~l~~~~HPDkgg 106 (125)
...++|.+++. ..++.+.+|+-++=+-.--..|||.|.
T Consensus 36 ~~L~~a~~ll~~yr~g~~~~~t~~~lW~Akk~~dS~~HPDTGe 78 (318)
T TIGR00798 36 KQLEKAREIVEDYKAGKASPLTVDELWRAKKLYDSAFHPDTGE 78 (318)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcCCCCCC
Confidence 34456666654 223345567777766677789999964
No 107
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=30.54 E-value=31 Score=21.94 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=19.6
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHHhCC
Q psy5624 77 ILGVSQSANRMKIKEAHKRIITLNHP 102 (125)
Q Consensus 77 iLgl~~~~~~~~Ik~ayr~l~~~~HP 102 (125)
|..|..+.+.++||+.|.+++....|
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCH
Confidence 44567777888888888888876655
No 108
>smart00427 H2B Histone H2B.
Probab=30.23 E-value=68 Score=21.30 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=11.9
Q ss_pred HHHHHHhCCCCCCCH
Q psy5624 94 KRIITLNHPDRGGSP 108 (125)
Q Consensus 94 r~l~~~~HPDkggs~ 108 (125)
.+..++.|||.|=+.
T Consensus 8 ~kvLKqVhpd~giS~ 22 (89)
T smart00427 8 YKVLKQVHPDTGISS 22 (89)
T ss_pred HHHHHHhCCCccccH
Confidence 577899999997553
No 109
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.21 E-value=35 Score=18.72 Aligned_cols=30 Identities=37% Similarity=0.429 Sum_probs=19.4
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC
Q psy5624 69 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDR 104 (125)
Q Consensus 69 m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDk 104 (125)
|+..|+.++||+++. .|+ .|.+.-+.. |.+
T Consensus 1 ~~~~e~a~~~gv~~~----tlr-~~~~~g~l~-~~~ 30 (49)
T cd04761 1 YTIGELAKLTGVSPS----TLR-YYERIGLLS-PAR 30 (49)
T ss_pred CcHHHHHHHHCcCHH----HHH-HHHHCCCCC-CCc
Confidence 678899999999654 444 444444433 654
No 110
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=30.14 E-value=26 Score=19.61 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=14.6
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHH
Q psy5624 68 KMTKREASLILGVSQSANRMKIKEAHK 94 (125)
Q Consensus 68 ~m~~~eA~~iLgl~~~~~~~~Ik~ayr 94 (125)
.+|..+..+.||++.. |...+.++|+
T Consensus 17 G~s~~~ia~~lgvs~~-Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRS-TVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HH-HHHHHHT---
T ss_pred CCCHHHHHHHHCcCHH-HHHHHHHHcc
Confidence 5677889999999765 4555566665
No 111
>PF05801 DUF840: Lagovirus protein of unknown function (DUF840); InterPro: IPR008558 This family consists of several Lagovirus sequences of unknown function, largely from Oryctolagus cuniculus hemorrhagic disease virus.
Probab=29.86 E-value=76 Score=21.40 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy5624 16 LTGLGLAAVGYAGRYILKAAPMASARLNEALKA 48 (125)
Q Consensus 16 i~gl~v~~~~~~~ra~~~a~~~~~~~~~~~~~~ 48 (125)
.+|+++++++++.-+.+| +|+.+..+|++.+
T Consensus 4 figl~laga~vlsnallr--rqelqlqkqalen 34 (114)
T PF05801_consen 4 FIGLGLAGASVLSNALLR--RQELQLQKQALEN 34 (114)
T ss_pred hhccccchHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 368899999999988887 3444444455544
No 112
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=29.64 E-value=1.3e+02 Score=23.31 Aligned_cols=50 Identities=26% Similarity=0.145 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEA 117 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~A 117 (125)
..|+.+|--++||++++.-...+.++-++|-.. -|....+++...++.++
T Consensus 130 ~g~s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~-~~~~~~~~~~~~~~v~~ 179 (293)
T PRK09636 130 FGVPFDEIASTLGRSPAACRQLASRARKHVRAA-RPRFPVSDEEGAELVEA 179 (293)
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-CCCCCCCchHHHHHHHH
Confidence 468889999999999887777777776666554 34332333334444433
No 113
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=29.26 E-value=1.3e+02 Score=18.16 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=18.9
Q ss_pred CHHHHHHHhCCCCCCCHHH-HHHHHHHHHHHhCCC
Q psy5624 70 TKREASLILGVSQSANRMK-IKEAHKRIITLNHPD 103 (125)
Q Consensus 70 ~~~eA~~iLgl~~~~~~~~-Ik~ayr~l~~~~HPD 103 (125)
+...|.+.||-.+.-+.++ |+.+|+ -.+.||+
T Consensus 28 d~~kA~~~LgW~p~~~L~~~i~~~w~--W~~~np~ 60 (62)
T PF13950_consen 28 DISKAREELGWKPKYSLEDMIRDAWN--WQKKNPN 60 (62)
T ss_dssp --HHHHHHC----SSSHHHHHHHHHH--HHHHSTT
T ss_pred CHHHHHHHhCCCcCCCHHHHHHHHHH--HHHHCcC
Confidence 4578999999999888877 555555 4566774
No 114
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=28.90 E-value=29 Score=21.07 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHHHHHhCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q psy5624 72 REASLILGVSQSANRMKI-KEAHKRIITLNHPDR 104 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~I-k~ayr~l~~~~HPDk 104 (125)
++.+++||+++ +++ ...........|||=
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 35568888865 344 444566777778863
No 115
>PF13056 DUF3918: Protein of unknown function (DUF3918)
Probab=27.07 E-value=93 Score=17.91 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy5624 10 CASTAILTGLGLAAVGYAGRYI 31 (125)
Q Consensus 10 ma~~~ii~gl~v~~~~~~~ra~ 31 (125)
+-++++.+|+++++-.+..|.-
T Consensus 4 ~mtSlla~GaG~aAy~~A~~n~ 25 (43)
T PF13056_consen 4 TMTSLLAFGAGAAAYQMAQRND 25 (43)
T ss_pred HHHHHHHHhHHHHHHHHHHHcc
Confidence 3455777777777766655543
No 116
>PF14893 PNMA: PNMA
Probab=25.68 E-value=59 Score=26.55 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy5624 68 KMTKREASLILGVSQSANRMKIKEAHKR 95 (125)
Q Consensus 68 ~m~~~eA~~iLgl~~~~~~~~Ik~ayr~ 95 (125)
.++.+.+..|+||+++++.+||.++-+.
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 4667889999999999999999987554
No 117
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=24.78 E-value=2e+02 Score=22.57 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAK 118 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Ay 118 (125)
..++.+|.-++||++++.-...+..+-++|-. ..|....++....++.++|
T Consensus 133 ~g~s~~EIA~~Lgis~~tVr~~l~RAr~~Lr~-~~~~~~~~~~~~~~~~~~f 183 (290)
T PRK09635 133 FGLPYQQIATTIGSQASTCRQLAHRARRKINE-SRIAASVEPAQHRVVTRAF 183 (290)
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh-hCCCCCCChHHHHHHHHHH
Confidence 46888999999999887666666666555544 3453334444344444443
No 118
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=24.58 E-value=93 Score=21.41 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRIITL 99 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~ 99 (125)
-..|+.+|.-+.||++.++-...+..+.++|-..
T Consensus 119 ~~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~ 152 (159)
T PRK12527 119 LEGLSHQQIAEHLGISRSLVEKHIVNAMKHCRVR 152 (159)
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766555555555555443
No 119
>KOG3219|consensus
Probab=24.38 E-value=1.3e+02 Score=22.91 Aligned_cols=28 Identities=25% Similarity=0.164 Sum_probs=21.1
Q ss_pred HHHHHHhCC---CCCCCHHHHHHHHHHHHHH
Q psy5624 72 REASLILGV---SQSANRMKIKEAHKRIITL 99 (125)
Q Consensus 72 ~eA~~iLgl---~~~~~~~~Ik~ayr~l~~~ 99 (125)
+||..|.+. ++..-+.-|++|||+|-.+
T Consensus 151 EeAl~V~~~~~e~~PLqP~HIREA~rrL~~q 181 (195)
T KOG3219|consen 151 EEALDVREEWGESGPLQPKHIREAYRRLKLQ 181 (195)
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHhc
Confidence 677777544 4456789999999999764
No 120
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=23.76 E-value=1.4e+02 Score=23.98 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Q psy5624 65 FEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNH 101 (125)
Q Consensus 65 ~~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~H 101 (125)
.....|.+|-..+-|+++..+.+||...|.-|....|
T Consensus 21 ~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~ 57 (283)
T COG1072 21 TPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQ 57 (283)
T ss_pred CccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3566788999999999999999999999998876653
No 121
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=23.46 E-value=2e+02 Score=22.83 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=30.1
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5624 64 GFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPD 103 (125)
Q Consensus 64 ~~~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPD 103 (125)
..--..+..||..++|+.+-.+.++++++ +++.....|.
T Consensus 133 a~vvTPNl~EA~~L~g~~~i~~~~d~~~a-~~~i~~~g~~ 171 (263)
T COG0351 133 ATVVTPNLPEAEALSGLPKIKTEEDMKEA-AKLLHELGAK 171 (263)
T ss_pred CeEecCCHHHHHHHcCCCccCCHHHHHHH-HHHHHHhCCC
Confidence 34456778999999998555688999999 7777776665
No 122
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=23.20 E-value=99 Score=21.25 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRIITL 99 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~ 99 (125)
-..||.+|.-++||++.+.-...+..+-++|-..
T Consensus 120 ~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~ 153 (160)
T PRK09642 120 LEEKSYQEIALQEKIEVKTVEMKLYRARKWIKKH 153 (160)
T ss_pred HhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888775555555554444443
No 123
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=22.96 E-value=55 Score=21.94 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.4
Q ss_pred HhCCCCCCCHHHHHHHHHHHHH
Q psy5624 77 ILGVSQSANRMKIKEAHKRIIT 98 (125)
Q Consensus 77 iLgl~~~~~~~~Ik~ayr~l~~ 98 (125)
+|-++++++..+|+++...++-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF~ 46 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELFG 46 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 4778899999999999999885
No 124
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=22.91 E-value=74 Score=18.77 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=16.4
Q ss_pred HhCCCCCCCHHHHHHHHHHHH
Q psy5624 77 ILGVSQSANRMKIKEAHKRII 97 (125)
Q Consensus 77 iLgl~~~~~~~~Ik~ayr~l~ 97 (125)
+=|+.|..+++|.|+.-|+=.
T Consensus 4 ~egl~pk~DPeE~k~kmR~dv 24 (51)
T PF15178_consen 4 IEGLGPKMDPEEMKRKMREDV 24 (51)
T ss_pred cccCCCCCCHHHHHHHHHHHH
Confidence 458888899999988877643
No 125
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=22.46 E-value=2.7e+02 Score=21.51 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=32.8
Q ss_pred ccccCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy5624 59 KYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG 106 (125)
Q Consensus 59 ~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg 106 (125)
+|..|| .-+.++|-.-.|++ .++|.+++..+....+||+.-
T Consensus 28 DFCCGG---~~~L~~Aa~~k~l~----~~~i~a~L~~l~~~~~~~~dw 68 (221)
T COG2846 28 DFCCGG---KVTLERAAAEKGLD----IDEIEARLNALQQEPTPSKDW 68 (221)
T ss_pred ceecCC---hHHHHHHHHHcCCC----HHHHHHHHHHHHhccCcccCc
Confidence 566665 45678888777775 889999999999999999854
No 126
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.38 E-value=2.3e+02 Score=18.36 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=21.3
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 76 LILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 76 ~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
.+.|++|.+|.+||+.+=.+.+++.
T Consensus 7 ~L~~fePpaT~~EI~aAAlQyVRKv 31 (78)
T PF10041_consen 7 TLRNFEPPATDEEIRAAALQYVRKV 31 (78)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 4678899999999999988887776
No 127
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=22.18 E-value=70 Score=18.22 Aligned_cols=21 Identities=0% Similarity=0.045 Sum_probs=16.0
Q ss_pred hCCCCCCCHHHHHHHHHHHHH
Q psy5624 78 LGVSQSANRMKIKEAHKRIIT 98 (125)
Q Consensus 78 Lgl~~~~~~~~Ik~ayr~l~~ 98 (125)
-||+++.+.++|++.|...-.
T Consensus 4 ~nlp~~~t~~~l~~~f~~~g~ 24 (70)
T PF00076_consen 4 GNLPPDVTEEELRDFFSQFGK 24 (70)
T ss_dssp ESETTTSSHHHHHHHHHTTST
T ss_pred cCCCCcCCHHHHHHHHHHhhh
Confidence 378888899999888876443
No 128
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=21.78 E-value=1e+02 Score=21.42 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITL 99 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~ 99 (125)
..++.+|.-++||++.+.-...+.++-++|-..
T Consensus 133 ~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 165 (173)
T PRK09645 133 RGWSTAQIAADLGIPEGTVKSRLHYALRALRLA 165 (173)
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 468888999999998876556666665555443
No 129
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=21.54 E-value=94 Score=18.49 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=18.0
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5624 68 KMTKREASLILGVSQSANRMKIKEAHKRI 96 (125)
Q Consensus 68 ~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l 96 (125)
.|+.+||...|||... .+|+.-|++
T Consensus 15 hlp~~eAA~~Lgv~~T----~LKr~CR~~ 39 (52)
T PF02042_consen 15 HLPIKEAAKELGVSVT----TLKRRCRRL 39 (52)
T ss_pred CCCHHHHHHHhCCCHH----HHHHHHHHc
Confidence 3788999999999644 566665544
No 130
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=21.50 E-value=1.2e+02 Score=17.71 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy5624 9 PCASTAILTGLGLAAVGYAGRY 30 (125)
Q Consensus 9 ~ma~~~ii~gl~v~~~~~~~ra 30 (125)
--+-|.+++|+++...+.++|-
T Consensus 23 i~~lP~~~~Gi~Lii~g~v~r~ 44 (49)
T PF11384_consen 23 IQALPAILIGIGLIISGGVGRR 44 (49)
T ss_pred hhccHHHHHhHHHHhhhhhhhh
Confidence 3456777888888888777663
No 131
>PRK12511 RNA polymerase sigma factor; Provisional
Probab=20.87 E-value=1.5e+02 Score=21.20 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCCCCCHH---HHHHHHHHHHHHhCCCCC
Q psy5624 66 EPKMTKREASLILGVSQSANRM---KIKEAHKRIITLNHPDRG 105 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~---~Ik~ayr~l~~~~HPDkg 105 (125)
-..|+.+|.-++||++.+.-.. ..++.-++++...-|+.|
T Consensus 125 ~eg~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~~~~~~~~~~ 167 (182)
T PRK12511 125 IEGLSYQEAAAVLGIPIGTLMSRIGRARAALRAFEEGTGPARG 167 (182)
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3478899999999999875333 334444555666667764
No 132
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=20.67 E-value=98 Score=18.69 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=14.3
Q ss_pred CCCCCCHHHHHHHhCCCCC
Q psy5624 65 FEPKMTKREASLILGVSQS 83 (125)
Q Consensus 65 ~~~~m~~~eA~~iLgl~~~ 83 (125)
..+.||.+|-..+||-+..
T Consensus 12 i~~GmTk~qV~~lLG~P~~ 30 (71)
T PF04355_consen 12 IKPGMTKDQVRALLGSPSL 30 (71)
T ss_dssp T-TTSBHHHHHHHHTS-SE
T ss_pred hcCCCCHHHHHHhcCCCCc
Confidence 4567999999999996543
No 133
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=20.47 E-value=1.1e+02 Score=22.05 Aligned_cols=11 Identities=18% Similarity=-0.067 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q psy5624 109 YLAAKINEAKD 119 (125)
Q Consensus 109 ~~~~~i~~Aye 119 (125)
..+.++|.+|+
T Consensus 94 ~~L~~lN~~Y~ 104 (158)
T TIGR03180 94 AALLEGNAAYE 104 (158)
T ss_pred HHHHHHHHHHH
Confidence 45677788886
No 134
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=20.29 E-value=97 Score=21.72 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRII 97 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~ 97 (125)
-..++..|.-++||++.+.-...+.++-++|-
T Consensus 133 ~~g~s~~EIA~~lgis~~tV~~~l~ra~~~~~ 164 (172)
T PRK12523 133 LDGMGHAEIAERLGVSVSRVRQYLAQGLRQCY 164 (172)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35688899999999988766666666665553
No 135
>PF08951 EntA_Immun: Enterocin A Immunity; InterPro: IPR015046 Gram-positive lactobacilli produce bacteriocins to kill closely-related competitor species []. To protect themselves from the bacteriocidal activity of this molecule they co-express an immunity protein (for discussion of this operon see Bacteriocin_IIc PF10439 from PFAM). The immunity protein structure is a soluble, cytoplasmic, antiparallel four alpha-helical globular bundle with a fifth, more flexible and more divergent C-terminal helical hair-pin []. The C-terminal hair-pin recognises the C terminus of the producer bacteriocin and this interaction is sufficient to dis-orient the bacteriocin within the membrane and close up the permeabilising pore that on its own the bacteriocin creates []. These immunity proteins interact in the same way with other bacteriocins, family Bacteriocin_II, PF01721 from PFAM. Since many enterococci can produce more than one bacteriocin it seems likely that the whole operon can be carried on transferable plasmids []. ; PDB: 2BL8_C 2BL7_A 2K19_A 2FU2_A 1TDP_A 2IP6_A.
Probab=20.27 E-value=1.7e+02 Score=17.40 Aligned_cols=24 Identities=29% Similarity=0.178 Sum_probs=12.0
Q ss_pred hCCCCCCCHHHHHHHHHHHHHhhc
Q psy5624 100 NHPDRGGSPYLAAKINEAKDLLEQ 123 (125)
Q Consensus 100 ~HPDkggs~~~~~~i~~Aye~L~~ 123 (125)
++||...+.+..+-+..|+..|.+
T Consensus 15 ~~~~~~~~~~lr~iL~~a~~~l~~ 38 (75)
T PF08951_consen 15 NDLDVKINEELRKILLKAKNELEK 38 (75)
T ss_dssp CCHCHHCGHHHHHHHHHHHHHHHT
T ss_pred hcccccCCHHHHHHHHHHHHHHhc
Confidence 445555555555555555554443
No 136
>CHL00168 pbsA heme oxygenase; Provisional
Probab=20.24 E-value=2.6e+02 Score=21.61 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHHHh
Q psy5624 85 NRMKIKEAHKRIITLN 100 (125)
Q Consensus 85 ~~~~Ik~ayr~l~~~~ 100 (125)
+..+.|+.||..+...
T Consensus 164 ~~~~fk~~yr~~Ld~l 179 (238)
T CHL00168 164 DDQEFKQIYKAALDNL 179 (238)
T ss_pred cHHHHHHHHHHHHhcC
Confidence 5678888888887755
No 137
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=20.15 E-value=1.4e+02 Score=21.44 Aligned_cols=11 Identities=18% Similarity=0.126 Sum_probs=7.3
Q ss_pred HHHHHHHHHHH
Q psy5624 109 YLAAKINEAKD 119 (125)
Q Consensus 109 ~~~~~i~~Aye 119 (125)
..+.++|.+|+
T Consensus 94 ~~L~~lN~~Y~ 104 (157)
T TIGR03164 94 ARFTRLNNAYR 104 (157)
T ss_pred HHHHHHHHHHH
Confidence 34566777776
No 138
>CHL00030 rpl23 ribosomal protein L23
Probab=20.14 E-value=84 Score=20.88 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=18.9
Q ss_pred HhCCCCCCCHHHHHHHHHHHHH
Q psy5624 77 ILGVSQSANRMKIKEAHKRIIT 98 (125)
Q Consensus 77 iLgl~~~~~~~~Ik~ayr~l~~ 98 (125)
.|-++++++..||+++...++.
T Consensus 23 ~F~V~~~anK~eIK~avE~lf~ 44 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFFG 44 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 3678889999999999999874
Done!