Query psy5624
Match_columns 125
No_of_seqs 256 out of 1459
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 22:26:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guz_A Mitochondrial import in 99.9 2.2E-23 7.5E-28 132.5 7.6 66 59-124 1-67 (71)
2 2guz_B Mitochondrial import in 99.9 3.3E-23 1.1E-27 130.0 6.5 55 69-123 1-58 (65)
3 1faf_A Large T antigen; J doma 99.7 3.4E-18 1.2E-22 110.5 5.6 56 69-124 8-65 (79)
4 1iur_A KIAA0730 protein; DNAJ 99.7 1.2E-16 3.9E-21 105.4 6.9 58 66-123 10-72 (88)
5 2yua_A Williams-beuren syndrom 99.6 1.9E-15 6.4E-20 101.1 7.2 60 65-124 10-73 (99)
6 2ys8_A RAB-related GTP-binding 99.6 1.1E-15 3.7E-20 100.8 5.9 53 72-124 27-82 (90)
7 2ctr_A DNAJ homolog subfamily 99.6 1.4E-15 4.9E-20 99.6 6.3 55 70-124 5-62 (88)
8 2dn9_A DNAJ homolog subfamily 99.6 1.6E-15 5.4E-20 97.2 6.1 56 69-124 4-63 (79)
9 2o37_A Protein SIS1; HSP40, J- 99.6 2.8E-15 9.7E-20 99.0 6.6 55 70-124 6-61 (92)
10 2och_A Hypothetical protein DN 99.6 3.4E-15 1.2E-19 94.5 6.3 53 72-124 8-61 (73)
11 2ej7_A HCG3 gene; HCG3 protein 99.6 2.7E-15 9.2E-20 96.7 5.8 53 72-124 9-66 (82)
12 2ctp_A DNAJ homolog subfamily 99.6 1.6E-15 5.6E-20 97.0 4.0 56 69-124 4-62 (78)
13 2ctw_A DNAJ homolog subfamily 99.6 6.3E-15 2.2E-19 100.2 6.5 59 66-124 11-73 (109)
14 1gh6_A Large T antigen; tumor 99.5 1.5E-15 5.1E-20 104.5 3.1 53 72-124 8-62 (114)
15 1wjz_A 1700030A21RIK protein; 99.5 1.7E-15 5.7E-20 100.0 2.1 58 67-124 11-78 (94)
16 2cug_A Mkiaa0962 protein; DNAJ 99.5 9E-15 3.1E-19 95.7 5.5 54 71-124 16-72 (88)
17 2dmx_A DNAJ homolog subfamily 99.5 9E-15 3.1E-19 96.3 5.5 53 72-124 9-66 (92)
18 2ctq_A DNAJ homolog subfamily 99.5 1.4E-14 4.7E-19 98.9 5.8 56 69-124 17-76 (112)
19 1hdj_A Human HSP40, HDJ-1; mol 99.5 1.8E-14 6.2E-19 91.9 5.7 52 73-124 4-58 (77)
20 2lgw_A DNAJ homolog subfamily 99.5 4.6E-14 1.6E-18 94.6 6.6 52 73-124 3-59 (99)
21 2l6l_A DNAJ homolog subfamily 99.5 3.7E-14 1.3E-18 101.4 5.4 57 68-124 6-72 (155)
22 2qsa_A DNAJ homolog DNJ-2; J-d 99.5 3.2E-14 1.1E-18 96.4 4.7 53 72-124 15-75 (109)
23 2pf4_E Small T antigen; PP2A, 99.5 9.7E-15 3.3E-19 107.1 2.0 54 71-124 10-65 (174)
24 2qwo_B Putative tyrosine-prote 99.4 2E-14 6.7E-19 95.5 1.4 49 75-123 36-91 (92)
25 1bq0_A DNAJ, HSP40; chaperone, 99.4 1.5E-14 5E-19 97.2 0.7 52 73-124 4-59 (103)
26 3apq_A DNAJ homolog subfamily 99.3 6.5E-13 2.2E-17 97.4 4.7 52 73-124 3-58 (210)
27 3lz8_A Putative chaperone DNAJ 99.3 1E-13 3.5E-18 110.2 0.0 59 66-124 22-83 (329)
28 3ag7_A Putative uncharacterize 99.3 1.9E-13 6.4E-18 92.8 0.1 50 74-124 43-103 (106)
29 1fpo_A HSC20, chaperone protei 99.3 1.7E-12 5.8E-17 94.6 5.0 52 73-124 2-64 (171)
30 3hho_A CO-chaperone protein HS 99.3 3.7E-12 1.3E-16 93.0 5.1 52 73-124 5-67 (174)
31 3bvo_A CO-chaperone protein HS 99.2 6.1E-12 2.1E-16 94.3 4.9 54 71-124 42-106 (207)
32 1n4c_A Auxilin; four helix bun 99.2 1.8E-12 6.3E-17 95.5 1.3 52 73-124 118-176 (182)
33 3uo3_A J-type CO-chaperone JAC 99.1 3.5E-11 1.2E-15 88.5 1.9 52 73-124 12-71 (181)
34 3apo_A DNAJ homolog subfamily 99.0 7E-11 2.4E-15 101.1 0.5 57 68-124 17-77 (780)
35 2y4t_A DNAJ homolog subfamily 98.0 4.1E-06 1.4E-10 64.7 3.7 51 74-124 384-441 (450)
36 1ug2_A 2610100B20RIK gene prod 51.6 7.9 0.00027 25.1 1.9 21 84-104 68-88 (95)
37 2pzi_A Probable serine/threoni 45.0 14 0.00046 30.8 2.9 43 74-120 631-675 (681)
38 2i8b_A Minor nucleoprotein VP3 42.9 12 0.0004 25.8 1.8 21 86-110 84-104 (152)
39 2lr8_A CAsp8-associated protei 47.7 5.5 0.00019 24.4 0.0 22 83-104 47-68 (70)
40 1xsv_A Hypothetical UPF0122 pr 39.1 27 0.00092 22.5 3.1 55 66-122 39-93 (113)
41 2jpc_A SSRB; DNA binding prote 31.5 22 0.00074 19.6 1.5 29 68-100 13-41 (61)
42 1ku3_A Sigma factor SIGA; heli 31.2 34 0.0011 19.7 2.4 31 67-97 29-59 (73)
43 3hug_A RNA polymerase sigma fa 28.9 42 0.0014 20.2 2.7 31 66-96 51-81 (92)
44 1qqr_A Streptokinase domain B; 28.4 37 0.0013 23.3 2.5 28 76-103 36-63 (138)
45 1tty_A Sigma-A, RNA polymerase 28.4 39 0.0013 20.3 2.4 30 67-96 37-66 (87)
46 1bh9_B TAFII28; histone fold, 28.3 90 0.0031 19.6 4.2 18 82-99 68-85 (89)
47 2p7v_B Sigma-70, RNA polymeras 27.9 26 0.00088 20.0 1.4 27 67-93 24-50 (68)
48 1s7o_A Hypothetical UPF0122 pr 27.5 47 0.0016 21.4 2.8 53 67-121 37-89 (113)
49 1je8_A Nitrate/nitrite respons 27.4 30 0.001 20.7 1.7 30 67-100 35-64 (82)
50 2o8x_A Probable RNA polymerase 27.1 35 0.0012 19.0 1.9 31 67-97 30-60 (70)
51 2ket_A Cathelicidin-6; antimic 26.6 62 0.0021 15.6 2.5 17 87-103 4-20 (27)
52 3c57_A Two component transcrip 25.4 43 0.0015 20.6 2.2 30 67-100 41-70 (95)
53 1fse_A GERE; helix-turn-helix 24.4 49 0.0017 18.6 2.3 30 67-100 25-54 (74)
54 2ast_A S-phase kinase-associat 24.3 73 0.0025 21.5 3.5 22 68-89 128-149 (159)
55 2zfd_A Calcineurin B-like prot 23.7 1.8E+02 0.0061 19.9 5.9 49 66-114 136-191 (226)
56 1x3u_A Transcriptional regulat 23.4 39 0.0013 19.4 1.7 30 67-100 30-59 (79)
57 2p1m_A SKP1-like protein 1A; F 23.0 1.1E+02 0.0038 20.7 4.2 23 67-89 126-148 (160)
58 3v7o_A Minor nucleoprotein VP3 22.8 41 0.0014 25.1 1.9 21 86-110 159-179 (227)
59 3t72_q RNA polymerase sigma fa 22.5 62 0.0021 20.4 2.6 34 67-100 38-71 (99)
60 2lxi_A RNA-binding protein 10; 22.3 68 0.0023 19.2 2.7 19 79-97 8-26 (91)
61 3v7d_A Suppressor of kinetocho 22.1 72 0.0025 22.0 3.1 23 68-90 135-157 (169)
62 2ehb_A Calcineurin B-like prot 21.7 1.7E+02 0.0059 19.4 5.0 32 83-114 147-180 (207)
63 1p4w_A RCSB; solution structur 20.3 59 0.002 20.4 2.1 30 67-100 48-77 (99)
64 2lfw_A PHYR sigma-like domain; 20.0 80 0.0027 20.8 2.9 38 64-101 105-142 (157)
No 1
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.2e-23 Score=132.48 Aligned_cols=66 Identities=53% Similarity=0.960 Sum_probs=63.1
Q ss_pred ccccCCCCCCCCHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q psy5624 59 KYYKGGFEPKMTKREASLILGVSQ-SANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 59 ~~~~~~~~~~m~~~eA~~iLgl~~-~~~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L~~~ 124 (125)
+||.|+|+..|+.++||+||||++ +++.++|+++||+|++++|||++|+++.|++|++||++|.++
T Consensus 1 ~~~~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 1 GFLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKR 67 (71)
T ss_dssp CCCCSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 478999999999999999999999 799999999999999999999999999999999999999864
No 2
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.3e-23 Score=130.01 Aligned_cols=55 Identities=33% Similarity=0.467 Sum_probs=53.4
Q ss_pred CCHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Q psy5624 69 MTKREASLILGVSQS---ANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQ 123 (125)
Q Consensus 69 m~~~eA~~iLgl~~~---~~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L~~ 123 (125)
||.+||++||||+++ ++.++|+++||+||..||||+|||+|++++|++|+|+|..
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999 8999999999999999999999999999999999999975
No 3
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.73 E-value=3.4e-18 Score=110.53 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=52.5
Q ss_pred CCHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q psy5624 69 MTKREASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 69 m~~~eA~~iLgl~~~--~~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L~~~ 124 (125)
....++|+||||+++ ++.++||++||+|++++|||++|+.+.|++|++||++|.+.
T Consensus 8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~ 65 (79)
T 1faf_A 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTE 65 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhH
Confidence 455789999999999 99999999999999999999999999999999999999863
No 4
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.67 E-value=1.2e-16 Score=105.44 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhhc
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQ 123 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs-----~~~~~~i~~Aye~L~~ 123 (125)
...++..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~ 72 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK 72 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999875 4799999999999986
No 5
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=101.07 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 65 FEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 65 ~~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
....|+..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 10 ~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~ 73 (99)
T 2yua_A 10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSA 73 (99)
T ss_dssp CCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSH
T ss_pred CCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 4556888999999999999999999999999999999999864 57999999999999864
No 6
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=100.77 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=48.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRG---GSPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkg---gs~~~~~~i~~Aye~L~~~ 124 (125)
.++|+||||+++++.++||++||+|++++|||++ +..+.|++|++||++|.+.
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~ 82 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKN 82 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCc
Confidence 4678999999999999999999999999999997 5678999999999999863
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=99.56 Aligned_cols=55 Identities=31% Similarity=0.373 Sum_probs=50.0
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 70 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 70 ~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
+..++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~ 62 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDA 62 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCH
Confidence 34568899999999999999999999999999999886 47899999999999875
No 8
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=97.21 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=49.9
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 69 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 69 m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
++..++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|.++
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 63 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 344568899999999999999999999999999999764 58899999999999874
No 9
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.8e-15 Score=98.98 Aligned_cols=55 Identities=29% Similarity=0.408 Sum_probs=50.7
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhhcC
Q psy5624 70 TKREASLILGVSQSANRMKIKEAHKRIITLNHPDRG-GSPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 70 ~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkg-gs~~~~~~i~~Aye~L~~~ 124 (125)
...++|+||||+++++.++|+++||+|++++|||++ ++.+.|++|++||++|.+.
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~ 61 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDP 61 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCH
Confidence 446899999999999999999999999999999996 6789999999999999874
No 10
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.58 E-value=3.4e-15 Score=94.47 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=48.7
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs-~~~~~~i~~Aye~L~~~ 124 (125)
.++|+||||+++++.++|+++||+|++.+|||++++ .+.|++|++||++|.++
T Consensus 8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~ 61 (73)
T 2och_A 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDE 61 (73)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCH
Confidence 367899999999999999999999999999999764 79999999999999864
No 11
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=96.75 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=48.6
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs-----~~~~~~i~~Aye~L~~~ 124 (125)
.++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|.++
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~ 66 (82)
T 2ej7_A 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDA 66 (82)
T ss_dssp CCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSST
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCH
Confidence 468899999999999999999999999999999875 35899999999999875
No 12
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=97.02 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=50.0
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 69 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 69 m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
++..++|+||||+++++.++|+++||+|++.+|||++++ .+.|++|++||++|.++
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~ 62 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNP 62 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSH
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCH
Confidence 344578899999999999999999999999999999854 57899999999999864
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=6.3e-15 Score=100.19 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
...++..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.++
T Consensus 11 ~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~ 73 (109)
T 2ctw_A 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDA 73 (109)
T ss_dssp CTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred ccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCH
Confidence 345556789999999999999999999999999999999875 57899999999999874
No 14
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.55 E-value=1.5e-15 Score=104.48 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=50.0
Q ss_pred HHHHHHhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANR--MKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~--~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L~~~ 124 (125)
.++|+||||+++++. ++||++||+|++++|||++++.+.|++|++||++|.+.
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~ 62 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDG 62 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCH
Confidence 578899999999988 99999999999999999999999999999999999864
No 15
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.53 E-value=1.7e-15 Score=99.95 Aligned_cols=58 Identities=28% Similarity=0.374 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHHhhcC
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG----------SPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg----------s~~~~~~i~~Aye~L~~~ 124 (125)
..|+..++|+||||+++++.++||++||+|++++|||++. ..+.|++|++||++|.+.
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~ 78 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCH
Confidence 4567789999999999999999999999999999999964 247899999999999875
No 16
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=9e-15 Score=95.74 Aligned_cols=54 Identities=28% Similarity=0.398 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQSANRMKIKEAHKRIITLNHPDRGG---SPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg---s~~~~~~i~~Aye~L~~~ 124 (125)
..++|+||||+++++.++||++||+|++++|||+++ ..+.|++|++||++|.++
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~ 72 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNE 72 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCH
Confidence 357899999999999999999999999999999976 358999999999999864
No 17
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=9e-15 Score=96.31 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=48.3
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs-----~~~~~~i~~Aye~L~~~ 124 (125)
.++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|.++
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~ 66 (92)
T 2dmx_A 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDS 66 (92)
T ss_dssp CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSH
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCH
Confidence 467899999999999999999999999999999765 47899999999999864
No 18
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=98.87 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=50.8
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 69 MTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 69 m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
+...+.|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~ 76 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNE 76 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCH
Confidence 445789999999999999999999999999999999874 68999999999999864
No 19
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.51 E-value=1.8e-14 Score=91.87 Aligned_cols=52 Identities=29% Similarity=0.353 Sum_probs=47.3
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++.++|+++||+|++.+|||++++ .+.|++|++||++|.++
T Consensus 4 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~ 58 (77)
T 1hdj_A 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDP 58 (77)
T ss_dssp CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCH
Confidence 35799999999999999999999999999999753 58999999999999864
No 20
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=94.57 Aligned_cols=52 Identities=29% Similarity=0.298 Sum_probs=47.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs-----~~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 3 d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~ 59 (99)
T 2lgw_A 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDK 59 (99)
T ss_dssp CHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCH
Confidence 46899999999999999999999999999999865 37899999999999874
No 21
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.47 E-value=3.7e-14 Score=101.41 Aligned_cols=57 Identities=28% Similarity=0.421 Sum_probs=50.8
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHHhhcC
Q psy5624 68 KMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----------PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 68 ~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----------~~~~~~i~~Aye~L~~~ 124 (125)
.|+..+.|+||||+++++.++||++||+|++++|||++++ .+.|.+|++||++|.++
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp 72 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCH
Confidence 4556789999999999999999999999999999999653 27899999999999874
No 22
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.47 E-value=3.2e-14 Score=96.42 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=49.0
Q ss_pred HHHHHHhCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhhcC
Q psy5624 72 REASLILGVSQSA-NRMKIKEAHKRIITLNHPDRGGS-------PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 72 ~eA~~iLgl~~~~-~~~~Ik~ayr~l~~~~HPDkggs-------~~~~~~i~~Aye~L~~~ 124 (125)
.++|+||||++++ +.++||++||+|++.+|||++++ .+.|++|++||++|.++
T Consensus 15 ~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~ 75 (109)
T 2qsa_A 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75 (109)
T ss_dssp SCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCH
Confidence 5789999999999 99999999999999999999876 47899999999999874
No 23
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.47 E-value=9.7e-15 Score=107.06 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQSAN--RMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~~~--~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L~~~ 124 (125)
..++|+||||+++++ .++||++||++++++|||++|+++.|++|++||++|.++
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp 65 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDG 65 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHH
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCH
Confidence 468999999999988 699999999999999999999999999999999999864
No 24
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.43 E-value=2e-14 Score=95.53 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=44.4
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhhc
Q psy5624 75 SLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-------PYLAAKINEAKDLLEQ 123 (125)
Q Consensus 75 ~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs-------~~~~~~i~~Aye~L~~ 123 (125)
|++|||+..++.++||++||++++++|||++.+ ...|+.|++||++|.+
T Consensus 36 y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999642 3589999999999986
No 25
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.43 E-value=1.5e-14 Score=97.24 Aligned_cols=52 Identities=37% Similarity=0.468 Sum_probs=47.2
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.++
T Consensus 4 ~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~ 59 (103)
T 1bq0_A 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59 (103)
T ss_dssp CSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCS
T ss_pred CHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCH
Confidence 35699999999999999999999999999999764 47899999999999875
No 26
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.34 E-value=6.5e-13 Score=97.44 Aligned_cols=52 Identities=31% Similarity=0.399 Sum_probs=47.3
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.++
T Consensus 3 ~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~ 58 (210)
T 3apq_A 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDE 58 (210)
T ss_dssp CHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCH
Confidence 46899999999999999999999999999999752 47899999999999864
No 27
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.33 E-value=1e-13 Score=110.21 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhhcC
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS---PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs---~~~~~~i~~Aye~L~~~ 124 (125)
...|+..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.+.
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~ 83 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDE 83 (329)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhh
Confidence 456888999999999999999999999999999999999754 57899999999999875
No 28
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.31 E-value=1.9e-13 Score=92.81 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----C-------HHHHHHHHHHHHHhhcC
Q psy5624 74 ASLILGVSQSANRMKIKEAHKRIITLNHPDRGG----S-------PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 74 A~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkgg----s-------~~~~~~i~~Aye~L~~~ 124 (125)
.|+|||++. ++.++||++||++++++||||++ + .+.|++|++||++|.+.
T Consensus 43 ~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~ 103 (106)
T 3ag7_A 43 WKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103 (106)
T ss_dssp CCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCc
Confidence 457899986 99999999999999999999942 3 57899999999999875
No 29
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.31 E-value=1.7e-12 Score=94.63 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=46.1
Q ss_pred HHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSA--NRMKIKEAHKRIITLNHPDRGGS--P-------YLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~--~~~~Ik~ayr~l~~~~HPDkggs--~-------~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||++++ |.++|+++||+|++++|||++++ . ..|.+||+||++|+++
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp 64 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHP 64 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 468999999998 99999999999999999999543 2 4799999999999874
No 30
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.27 E-value=3.7e-12 Score=93.02 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=45.8
Q ss_pred HHHHHhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSAN--RMKIKEAHKRIITLNHPDRGGS---------PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~--~~~Ik~ayr~l~~~~HPDkggs---------~~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||+++++ .++|+++||+|++.+|||++++ ...|.+|++||++|.++
T Consensus 5 d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp 67 (174)
T 3hho_A 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDP 67 (174)
T ss_dssp CHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 4679999999876 9999999999999999999642 26799999999999874
No 31
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.23 E-value=6.1e-12 Score=94.28 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=46.8
Q ss_pred HHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhhcC
Q psy5624 71 KREASLILGVSQS--ANRMKIKEAHKRIITLNHPDRGGS---------PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 71 ~~eA~~iLgl~~~--~~~~~Ik~ayr~l~~~~HPDkggs---------~~~~~~i~~Aye~L~~~ 124 (125)
..+.|+||||+++ ++.++|+++||+|.+++|||++++ ...|++||+||++|+++
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp 106 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAP 106 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 4578999999986 789999999999999999999653 14679999999999874
No 32
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.22 E-value=1.8e-12 Score=95.51 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=46.1
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhhcC
Q psy5624 73 EASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS-------PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs-------~~~~~~i~~Aye~L~~~ 124 (125)
+.|+||||++.++.++||++||++++++|||++++ .+.|++|++||++|.+.
T Consensus 118 d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~ 176 (182)
T 1n4c_A 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 176 (182)
T ss_dssp CCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCH
Confidence 45699999999999999999999999999999532 36899999999999863
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.06 E-value=3.5e-11 Score=88.47 Aligned_cols=52 Identities=12% Similarity=0.268 Sum_probs=45.3
Q ss_pred HHHHHh------CCCC-CCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhhcC
Q psy5624 73 EASLIL------GVSQ-SANRMKIKEAHKRIITLNHPDRGG-SPYLAAKINEAKDLLEQS 124 (125)
Q Consensus 73 eA~~iL------gl~~-~~~~~~Ik~ayr~l~~~~HPDkgg-s~~~~~~i~~Aye~L~~~ 124 (125)
..|+|| |+++ +++.++|+++||+|++++|||+++ +.+.|.+|++||++|.++
T Consensus 12 d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp 71 (181)
T 3uo3_A 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDP 71 (181)
T ss_dssp CTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSH
T ss_pred CHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcCh
Confidence 345899 4655 799999999999999999999977 678899999999999874
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.97 E-value=7e-11 Score=101.10 Aligned_cols=57 Identities=28% Similarity=0.357 Sum_probs=30.6
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhhcC
Q psy5624 68 KMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGS----PYLAAKINEAKDLLEQS 124 (125)
Q Consensus 68 ~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs----~~~~~~i~~Aye~L~~~ 124 (125)
.....+.|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.++
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~ 77 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDE 77 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcCh
Confidence 3344678999999999999999999999999999999752 46899999999999874
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.98 E-value=4.1e-06 Score=64.66 Aligned_cols=51 Identities=27% Similarity=0.328 Sum_probs=45.0
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhhcC
Q psy5624 74 ASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSP-------YLAAKINEAKDLLEQS 124 (125)
Q Consensus 74 A~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~-------~~~~~i~~Aye~L~~~ 124 (125)
.+.+||+...++.++++++|+++.+.+|||+..++ ..|++|++||++|.++
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 35678898888999999999999999999998764 4899999999999875
No 36
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=51.61 E-value=7.9 Score=25.08 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCC
Q psy5624 84 ANRMKIKEAHKRIITLNHPDR 104 (125)
Q Consensus 84 ~~~~~Ik~ayr~l~~~~HPDk 104 (125)
-++++|+.+|+.||+.+|-.+
T Consensus 68 ks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 68 KTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999998655
No 37
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=44.96 E-value=14 Score=30.77 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=30.9
Q ss_pred HHHHhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy5624 74 ASLILGVSQSANR--MKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDL 120 (125)
Q Consensus 74 A~~iLgl~~~~~~--~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~ 120 (125)
++.+||++.+... .+|+++||++++..+++ .+...-|..|..+
T Consensus 631 ~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 631 TNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp SSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred CcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 3468888665433 67999999999976554 4677777777754
No 38
>2i8b_A Minor nucleoprotein VP30; VP30 ebola virus protein, transcription, RNA binding, viral; HET: MSE; 2.00A {Zaire ebolavirus}
Probab=42.88 E-value=12 Score=25.76 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCHHH
Q psy5624 86 RMKIKEAHKRIITLNHPDRGGSPYL 110 (125)
Q Consensus 86 ~~~Ik~ayr~l~~~~HPDkggs~~~ 110 (125)
.+-|++-|.++ |.||||+++.
T Consensus 84 ~~~vlevYqrl----HsDKGG~FEA 104 (152)
T 2i8b_A 84 AEPVLEVYQRL----HSDKGGSFEA 104 (152)
T ss_dssp HHHHHHHHHHH----HTCSSSHHHH
T ss_pred chHHHHHHHHH----hcccCccHHH
Confidence 46688888876 8899998853
No 39
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=47.68 E-value=5.5 Score=24.44 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q psy5624 83 SANRMKIKEAHKRIITLNHPDR 104 (125)
Q Consensus 83 ~~~~~~Ik~ayr~l~~~~HPDk 104 (125)
+-++++|..+|+.|+..+|-.|
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 3477899999999999998655
No 40
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=39.09 E-value=27 Score=22.48 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLE 122 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L~ 122 (125)
-..||..|.-+.||++.+.-...+.++.++|-.... +.+-...+.++...++-|.
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~--~~~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK--KLELYQKFEQRREIYDEMK 93 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH--HHhHHhHHHHHHHHHHHHH
Confidence 346899999999999887655556666555544431 2244566666666666553
No 41
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.53 E-value=22 Score=19.56 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=18.7
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 68 KMTKREASLILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 68 ~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
.+|..|--+.||+++. .|+...+++..+.
T Consensus 13 g~s~~eIA~~l~is~~----tV~~~~~~~~~kl 41 (61)
T 2jpc_A 13 GYTNHGISEKLHISIK----TVETHRMNMMRKL 41 (61)
T ss_dssp SCCSHHHHHHTCSCHH----HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHH----HHHHHHHHHHHHH
Confidence 4667888899999654 4555555555444
No 42
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.16 E-value=34 Score=19.73 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRII 97 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~ 97 (125)
..+|.+|--+.||++.+.-...+.++.++|-
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5799999999999977654455555555554
No 43
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.88 E-value=42 Score=20.24 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5624 66 EPKMTKREASLILGVSQSANRMKIKEAHKRI 96 (125)
Q Consensus 66 ~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l 96 (125)
-..||..|.-++||++.+.-...+.++.++|
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3468999999999998765444444444444
No 44
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=28.37 E-value=37 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=24.2
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q psy5624 76 LILGVSQSANRMKIKEAHKRIITLNHPD 103 (125)
Q Consensus 76 ~iLgl~~~~~~~~Ik~ayr~l~~~~HPD 103 (125)
..+-+....+.+|++++=..++.+.|||
T Consensus 36 ~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 36 KTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred cccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 4456667789999999999999999997
No 45
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.36 E-value=39 Score=20.32 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRI 96 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l 96 (125)
..+|..|.-++||++.+.-...+.++.++|
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 579999999999997664444444444444
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=28.30 E-value=90 Score=19.58 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy5624 82 QSANRMKIKEAHKRIITL 99 (125)
Q Consensus 82 ~~~~~~~Ik~ayr~l~~~ 99 (125)
....+..|++|||+|-..
T Consensus 68 ~Pl~P~HireA~rrl~~~ 85 (89)
T 1bh9_B 68 PPLQPKHMREAVRRLKSK 85 (89)
T ss_dssp SSCCHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHc
Confidence 456788999999998764
No 47
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=27.94 E-value=26 Score=19.96 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHH
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAH 93 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ay 93 (125)
..+|.+|.-++||++.+.-...+.++.
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 579999999999996654333333333
No 48
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.52 E-value=47 Score=21.36 Aligned_cols=53 Identities=21% Similarity=0.024 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLL 121 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~HPDkggs~~~~~~i~~Aye~L 121 (125)
..+|..|..+.||++++.-...+.++.++|-.... ..+-...++.+.+-++-|
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~--~~~~~~~~~~~~~~~~~~ 89 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEM--KLHMYSDYVVRSEIFDDM 89 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHH
Confidence 45889999999999987655555555555544331 123344444444444433
No 49
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.44 E-value=30 Score=20.67 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
..++..|.-+.||++.. .|+...++...+.
T Consensus 35 ~g~s~~eIA~~l~is~~----tV~~~l~r~~~kL 64 (82)
T 1je8_A 35 QGLPNKMIARRLDITES----TVKVHVKHMLKKM 64 (82)
T ss_dssp TTCCHHHHHHHHTSCHH----HHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHH----HHHHHHHHHHHHH
Confidence 45888999999999654 5555555555544
No 50
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=27.11 E-value=35 Score=19.01 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRII 97 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~ 97 (125)
..+|..|.-+.||+++..-...+.++.++|-
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4588999999999977644444444444443
No 51
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=26.62 E-value=62 Score=15.61 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhCCC
Q psy5624 87 MKIKEAHKRIITLNHPD 103 (125)
Q Consensus 87 ~~Ik~ayr~l~~~~HPD 103 (125)
...++.|++|+++..|-
T Consensus 4 krfrkkfkklfkklspv 20 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPV 20 (27)
T ss_dssp HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 46788899999888774
No 52
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.40 E-value=43 Score=20.55 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
..+|..|.-+.||++.. .|+...++...+.
T Consensus 41 ~g~s~~eIA~~l~is~~----tV~~~l~r~~~kL 70 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEK----TVKNYVSRLLAKL 70 (95)
T ss_dssp TTCCHHHHHHHHTCCHH----HHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHH----HHHHHHHHHHHHH
Confidence 45788999999999655 4444444444443
No 53
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.41 E-value=49 Score=18.57 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
..++..|.-+.||+++. .|+...+++..+.
T Consensus 25 ~g~s~~eIA~~l~is~~----tV~~~~~~~~~kl 54 (74)
T 1fse_A 25 QDKTTKEIASELFISEK----TVRNHISNAMQKL 54 (74)
T ss_dssp TTCCHHHHHHHHTSCHH----HHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHH----HHHHHHHHHHHHH
Confidence 45688899999999654 5555555554444
No 54
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=24.34 E-value=73 Score=21.52 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=18.0
Q ss_pred CCCHHHHHHHhCCCCCCCHHHH
Q psy5624 68 KMTKREASLILGVSQSANRMKI 89 (125)
Q Consensus 68 ~m~~~eA~~iLgl~~~~~~~~I 89 (125)
++|.+|-+++||+..+.|++|-
T Consensus 128 gkt~eeir~~f~I~~d~t~eEe 149 (159)
T 2ast_A 128 GKTPEEIRKTFNIKNDFTEEEE 149 (159)
T ss_dssp SCCHHHHHHHTTCCCCSCTTHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHH
Confidence 4688999999999988777654
No 55
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=23.67 E-value=1.8e+02 Score=19.87 Aligned_cols=49 Identities=6% Similarity=0.085 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHh-----CCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHH
Q psy5624 66 EPKMTKREASLIL-----GVSQSANRMKIKEAHKRIITLNHPDRGG--SPYLAAKI 114 (125)
Q Consensus 66 ~~~m~~~eA~~iL-----gl~~~~~~~~Ik~ayr~l~~~~HPDkgg--s~~~~~~i 114 (125)
...++.+|-..+| .+....+.+++..-.++++....+|..| +.+.|..+
T Consensus 136 ~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~~ 191 (226)
T 2zfd_A 136 QGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSL 191 (226)
T ss_dssp SSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 3445666666555 2344556666666667777788777766 44444443
No 56
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.37 E-value=39 Score=19.41 Aligned_cols=30 Identities=7% Similarity=0.157 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
..|+..|.-+.||++. ..|+...++...+.
T Consensus 30 ~g~s~~eIA~~l~is~----~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISP----RTVEVHRANVMAKM 59 (79)
T ss_dssp TTCCHHHHHHHTTSCH----HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH----HHHHHHHHHHHHHH
Confidence 4688899999999854 56666666666666
No 57
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.99 E-value=1.1e+02 Score=20.67 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHH
Q psy5624 67 PKMTKREASLILGVSQSANRMKI 89 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~I 89 (125)
.+.|.+|-+++||+..+.|++|-
T Consensus 126 kgkt~eeir~~f~I~nd~t~eEe 148 (160)
T 2p1m_A 126 KGKTPEEIRTTFNIKNDFTPEEE 148 (160)
T ss_dssp TTCCHHHHHHHTTCCCCCCHHHH
T ss_pred cCCCHHHHHHHcCCCCCCCHHHH
Confidence 34789999999999988887653
No 58
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=22.78 E-value=41 Score=25.06 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCHHH
Q psy5624 86 RMKIKEAHKRIITLNHPDRGGSPYL 110 (125)
Q Consensus 86 ~~~Ik~ayr~l~~~~HPDkggs~~~ 110 (125)
.+-|.+-|.+| |.||||.++.
T Consensus 159 ~~~~~~~y~~~----h~dkgg~fea 179 (227)
T 3v7o_A 159 ADSVLEVYQRL----HSDKGGNFEA 179 (227)
T ss_dssp HHHHHHHHHHH----HTCCTTHHHH
T ss_pred hhHHHHHHHHH----hccCCccHHH
Confidence 35678888876 8999998853
No 59
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.48 E-value=62 Score=20.43 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
..+|.+|--++||++.+.-...+.++.++|-...
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999988765555666655554433
No 60
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=22.26 E-value=68 Score=19.16 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q psy5624 79 GVSQSANRMKIKEAHKRII 97 (125)
Q Consensus 79 gl~~~~~~~~Ik~ayr~l~ 97 (125)
||++++|.++|++.|...-
T Consensus 8 nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 8 MLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp TCCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhC
Confidence 7889999999999888764
No 61
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=22.13 E-value=72 Score=22.04 Aligned_cols=23 Identities=4% Similarity=-0.035 Sum_probs=18.8
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHH
Q psy5624 68 KMTKREASLILGVSQSANRMKIK 90 (125)
Q Consensus 68 ~m~~~eA~~iLgl~~~~~~~~Ik 90 (125)
..|.+|-+++||++.+.|++|-.
T Consensus 135 gktpeeiR~~f~I~nd~t~eEe~ 157 (169)
T 3v7d_A 135 GRSPEEIRRTFNIVNDFTPEEEA 157 (169)
T ss_dssp TCCHHHHHHHHTCCCCCCHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHH
Confidence 45789999999999998887643
No 62
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=21.70 E-value=1.7e+02 Score=19.37 Aligned_cols=32 Identities=6% Similarity=-0.064 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHH
Q psy5624 83 SANRMKIKEAHKRIITLNHPDRGG--SPYLAAKI 114 (125)
Q Consensus 83 ~~~~~~Ik~ayr~l~~~~HPDkgg--s~~~~~~i 114 (125)
..+.+++..-.+.++....+|..| +.+.|..+
T Consensus 147 ~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~ 180 (207)
T 2ehb_A 147 VLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDF 180 (207)
T ss_dssp CCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 344455555555556677666665 44444443
No 63
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.32 E-value=59 Score=20.39 Aligned_cols=30 Identities=17% Similarity=0.020 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q psy5624 67 PKMTKREASLILGVSQSANRMKIKEAHKRIITLN 100 (125)
Q Consensus 67 ~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~ 100 (125)
..|+..|--+.||++. ..|+...+++..+.
T Consensus 48 ~G~s~~EIA~~L~iS~----~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSI----KTISSQKKSAMMKL 77 (99)
T ss_dssp HTCCHHHHHHHHTSCH----HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCH----HHHHHHHHHHHHHH
Confidence 3577788888888854 45555555555555
No 64
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.03 E-value=80 Score=20.77 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Q psy5624 64 GFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNH 101 (125)
Q Consensus 64 ~~~~~m~~~eA~~iLgl~~~~~~~~Ik~ayr~l~~~~H 101 (125)
-+-..||.+|.-++||++++.-...+.++-++|-....
T Consensus 105 ~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 105 TAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999887666666666666655543
Done!