RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5624
(125 letters)
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 31.5 bits (71), Expect = 0.005
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 68 KMTKREASLILGVSQSA--NRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKDLLEQSK 125
+ K +L + + + ++++A+K+ L HPD+GGS L ++N +
Sbjct: 7 RADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEV 66
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus
[TaxId: 271]}
Length = 61
Score = 29.6 bits (67), Expect = 0.019
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 42 LNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRI 96
L +AL L + E+ + T E GV++ R +A +++
Sbjct: 2 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKL 56
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 28.8 bits (64), Expect = 0.073
Identities = 7/52 (13%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 77 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPY-------LAAKINEAKDLL 121
+G++ ++K+ +++ + + HPD+ + ++N+A
Sbjct: 38 PVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 89
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 28.2 bits (62), Expect = 0.10
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 77 ILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLAAKINEAKD 119
LG+++ A+ +IK A++R HPD+ P K E +
Sbjct: 8 TLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAE 50
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli
[TaxId: 562]}
Length = 68
Score = 26.6 bits (59), Expect = 0.27
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 44 EALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRIITLNHPD 103
+ L L E+ + T E V++ R +A ++ L HP
Sbjct: 1 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK---LRHPS 57
Query: 104 R 104
R
Sbjct: 58 R 58
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 26.9 bits (59), Expect = 0.31
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 72 REASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYL-----AAKINEAKDLLEQ 123
+E + ++ + + K+ +R+ HPD+ + + + LE+
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK 72
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima
[TaxId: 2336]}
Length = 87
Score = 26.6 bits (59), Expect = 0.40
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 41 RLNEALKALPKAESFANSKYYKGGFEPKMTKREASLILGVSQSANRMKIKEAHKRII-TL 99
L + LK L E+ Y T E V+ R +I++ + + L
Sbjct: 11 ELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVT----RERIRQIEVKALRKL 66
Query: 100 NHPDRGGSPYLAAKINEAKDLLEQSK 125
HP R + + L+++++
Sbjct: 67 RHPSR------SKYLKSLLSLMDENE 86
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 25.7 bits (56), Expect = 0.64
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 77 ILGVSQSANRMKIKEAHKRIITLNHPDR-GGSPYLAAKINEAKD 119
ILGVS++A +I++A+KR+ HPDR G AK E K+
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKE 51
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 24.2 bits (52), Expect = 2.8
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 68 KMTKREASLILGVSQSANRMKIKEAHKRIITLNHPDRGGSPYLA----------AKINEA 117
+ K++ ILG SAN +K+ ++++I L HPD+ + A +I++A
Sbjct: 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQA 71
Query: 118 KDLL 121
+L
Sbjct: 72 WKIL 75
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain,
AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 163
Score = 24.3 bits (52), Expect = 3.9
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 14 AILT---GLGLAAVGYAGRYILKAAPMASARLNEALKALPKAESFANSKYYKGGFEPKMT 70
AI+T G G+ + LK A + + E LP + N +
Sbjct: 7 AIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDY 66
Query: 71 KREASLIL 78
R A L+L
Sbjct: 67 YRTAKLLL 74
>d2np3a2 a.121.1.1 (A:100-211) Putative transcriptional regulator
SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Length = 112
Score = 23.5 bits (51), Expect = 6.1
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 14 AILTGLGLAAVGYAGRYILKAAPMASA 40
L GL + RY+ P+ASA
Sbjct: 72 TQLVGLAMM------RYVAHLEPLASA 92
>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId:
271]}
Length = 500
Score = 23.9 bits (51), Expect = 7.1
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 99 LNHPDRGGSPY 109
L G SPY
Sbjct: 49 LGPTGYGDSPY 59
>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 268
Score = 23.7 bits (51), Expect = 8.7
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 66 EPKMTKREASLILGVSQSANRMKIKEAHKRI-----ITLNHPDRG 105
P+ K + G QS + + A K + I +PD G
Sbjct: 16 SPEEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIG 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.126 0.343
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 402,951
Number of extensions: 15672
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 14
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.4 bits)