BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5629
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86X83|COMD2_HUMAN COMM domain-containing protein 2 OS=Homo sapiens GN=COMMD2 PE=1
SV=2
Length = 199
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 111/201 (55%), Gaps = 20/201 (9%)
Query: 1 MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
M++ L+E H+EHL+ L Q+ V+ +F + +L+ G N K+Y+ ++KL++ S+D VQ
Sbjct: 1 MLLELSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGANPKIYEGAARKLNV-SSDTVQ 59
Query: 61 DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISE 120
VEGL Y L ++ L ISE DF ++++ +GF+++ + +++ RT++SE
Sbjct: 60 HGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKE---IRTILSE 116
Query: 121 YISV--------------VATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNI 166
+A+RS Q +P TI+LHL + ++ L+ D ++L++
Sbjct: 117 LAPSLPSYHNLEWRLDVQLASRSLRQQIKPAVTIKLHLNQNGDHNTKV-LQTDPATLLHL 175
Query: 167 TQILEEALSHAKLNQ-RKMSR 186
Q LE+AL K N R++ R
Sbjct: 176 VQQLEQALEEMKTNHCRRVVR 196
>sp|Q8BXC6|COMD2_MOUSE COMM domain-containing protein 2 OS=Mus musculus GN=Commd2 PE=1
SV=1
Length = 199
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 18/200 (9%)
Query: 1 MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
M+++L+E H+EHL+ L Q+ V+ +F + +L+ G N K+Y+ ++KL++ S+D +Q
Sbjct: 1 MLLDLSEEHKEHLAFLPQVDTAVVAEFGRIAVEFLRRGSNPKIYEGAARKLNV-SSDTIQ 59
Query: 61 DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQ-----------DDKCE--KILYEFYT 107
VEGL Y L ++ L ISE DF ++++ +GF++ D++ E IL E
Sbjct: 60 HGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTILNELAP 119
Query: 108 QEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNIT 167
+ Y +L +A+RS Q +P TI+LHL+ + L+ D ++L++
Sbjct: 120 --RLPSYHSLEWRLDVQLASRSLRQQIKPAVTIKLHLDQNGDHSTHF-LQTDPATLLHLV 176
Query: 168 QILEEALSHAKLNQ-RKMSR 186
Q LE+AL K N R++ R
Sbjct: 177 QQLEQALEEMKTNHCRRVVR 196
>sp|Q5R610|COMD2_PONAB COMM domain-containing protein 2 OS=Pongo abelii GN=COMMD2 PE=2
SV=1
Length = 199
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 108/198 (54%), Gaps = 14/198 (7%)
Query: 1 MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
M++ L+E H+EHL+ L Q+ V+ +F + +L+ G N K+Y+ ++KL++ S+D VQ
Sbjct: 1 MLLELSEEHKEHLAFLPQVDSSVVAEFGRIAVEFLRRGANPKIYEGAARKLNV-SSDTVQ 59
Query: 61 DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNL------- 113
VEGL Y L ++ L ISE DF ++++ +GF+++ + +++ +
Sbjct: 60 HGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRMILSELAP 119
Query: 114 ----YRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQI 169
Y L +A+RS Q +P TI+LHL + +I L+ D ++L++ Q
Sbjct: 120 SLPSYHNLEWRLDVQLASRSLRQQIKPAVTIKLHLNQNGDHNTKI-LQTDPATLLHLVQQ 178
Query: 170 LEEALSHAKLNQ-RKMSR 186
LE+AL K N R++ R
Sbjct: 179 LEQALEEMKTNHCRRVVR 196
>sp|Q54P14|COMD2_DICDI COMM domain-containing protein 2 OS=Dictyostelium discoideum
GN=commd2 PE=4 SV=1
Length = 200
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 1 MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
MII L+ +H++ LS L L E+I +FC + ++K G N+KLY S+KL++ +AD ++
Sbjct: 1 MIIELDNTHKQDLSSLRSLSAEIISEFCKIALEFIKKGSNKKLYMGASQKLNI-AADKIE 59
Query: 61 DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTL 117
V+ + Y T ++E DF +TL + + D+ +IL E Y + ++ TL
Sbjct: 60 SLVDSITYLFSECTRFMLNENDFNDTLAPIKLS--DEVIEILRESYFDNRKDIRNTL 114
>sp|P78820|ACAC_SCHPO Acetyl-CoA carboxylase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cut6 PE=1 SV=2
Length = 2280
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 110 KYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEM 158
+YN+ + L+ EY +V S +N+ E +RL EN D+ +K I L +
Sbjct: 932 EYNVIKGLLEEYYNVEKLFSGINKREEDVILRLRDENKDDVDKVIALAL 980
>sp|Q7JEV9|MATK_TRIFE Maturase K OS=Trillium flexipes GN=matK PE=3 SV=1
Length = 521
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 112 NLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILE 171
N Y ++SE +V+ E F++RL P +E QI ++RS+ +I LE
Sbjct: 99 NFYSQMVSEGFAVIV--------EIPFSLRL---VPSSEEIQIPKSQNLRSIHSIFPFLE 147
Query: 172 EALSH 176
+ LSH
Sbjct: 148 DKLSH 152
>sp|Q7JEW0|MATK_TRIEE Maturase K OS=Trillium erectum GN=matK PE=3 SV=1
Length = 521
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 112 NLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILE 171
N Y ++SE +V+ E F++RL P +E QI ++RS+ +I LE
Sbjct: 99 NFYSQMVSEGFAVIV--------EIPFSLRL---VPSSEEIQIPKSQNLRSIHSIFPFLE 147
Query: 172 EALSH 176
+ LSH
Sbjct: 148 DKLSH 152
>sp|Q7JEW6|MATK_TRICE Maturase K OS=Trillium cernuum GN=matK PE=3 SV=1
Length = 521
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 112 NLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILE 171
N Y ++SE +V+ E F++RL P +E QI ++RS+ +I LE
Sbjct: 99 NFYSQMVSEGFAVIV--------EIPFSLRL---VPSSEEIQIPKSQNLRSIHSIFPFLE 147
Query: 172 EALSH 176
+ LSH
Sbjct: 148 DKLSH 152
>sp|Q9XPN6|MATK_HELBU Maturase K OS=Helonias bullata GN=matK PE=3 SV=1
Length = 515
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 112 NLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILE 171
+ Y ++SE +V+A E F++RL P +EK+I ++RS+ +I LE
Sbjct: 95 HFYSQMVSEGFAVIA--------EIPFSMRL---VPSFEEKEIPKSQNLRSIHSIFPFLE 143
Query: 172 EALSH 176
+ LSH
Sbjct: 144 DKLSH 148
>sp|Q38442|GP7_BPSPP Minor head structural component GP7 OS=Bacillus phage SPP1 GN=7
PE=4 SV=2
Length = 308
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 33 NYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTL 87
NYL+ ++Y + S+PSAD VQ +VE + L L +L + N +
Sbjct: 97 NYLRSAYIYEMYTGRNLGFSVPSADVVQRAVENPIPLLTLPKVLERQRVELINNI 151
>sp|Q9TMB2|MATK_MEDVI Maturase K OS=Medeola virginiana GN=matK PE=3 SV=1
Length = 516
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 113 LYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEE 172
Y ++SE SV+ E F++RL + + +E+EK+I ++RS+ +I LE+
Sbjct: 97 FYSQMVSESFSVIV--------EIPFSLRL-VSSLEEEEKEIPKSQNLRSIHSIFPFLED 147
Query: 173 ALSH 176
L H
Sbjct: 148 KLFH 151
>sp|Q5UQT9|YR353_MIMIV Uncharacterized protein R353 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R353 PE=4 SV=1
Length = 178
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 104 EFYTQEKYNLYRTLISEYISVVATR 128
EFYTQ +YNL + ISEY+S + TR
Sbjct: 23 EFYTQTEYNLEKP-ISEYVSYLGTR 46
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,253,990
Number of Sequences: 539616
Number of extensions: 2650074
Number of successful extensions: 7881
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7867
Number of HSP's gapped (non-prelim): 23
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)