Query psy5629
Match_columns 203
No_of_seqs 68 out of 70
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:32:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ug2_A 2610100B20RIK gene prod 80.8 2.6 9E-05 31.6 5.0 41 33-74 47-88 (95)
2 3t72_q RNA polymerase sigma fa 79.5 5.3 0.00018 29.3 6.4 80 15-106 16-95 (99)
3 2lr8_A CAsp8-associated protei 80.3 0.4 1.4E-05 34.2 0.0 39 33-72 28-66 (70)
4 2xvc_A ESCRT-III, SSO0910; cel 49.4 15 0.00052 25.2 3.2 35 31-66 15-49 (59)
5 2w7n_A TRFB transcriptional re 48.2 38 0.0013 25.1 5.6 91 4-110 4-94 (101)
6 1fc3_A SPO0A; response regulat 47.3 30 0.001 26.4 5.0 47 27-74 28-80 (120)
7 1tc3_C Protein (TC3 transposas 47.0 34 0.0012 19.6 4.3 30 30-63 13-42 (51)
8 2heo_A Z-DNA binding protein 1 44.8 14 0.00048 24.7 2.5 36 31-67 15-50 (67)
9 2glo_A Brinker CG9653-PA; prot 42.4 36 0.0012 21.6 4.2 38 26-64 9-47 (59)
10 1jko_C HIN recombinase, DNA-in 38.0 26 0.0009 20.5 2.8 31 29-63 12-42 (52)
11 1x3u_A Transcriptional regulat 37.3 62 0.0021 21.0 4.9 59 26-93 19-77 (79)
12 3mkl_A HTH-type transcriptiona 36.8 1.1E+02 0.0038 21.7 7.4 68 27-95 8-86 (120)
13 2x48_A CAG38821; archeal virus 36.7 59 0.002 19.9 4.4 32 28-63 21-52 (55)
14 2cob_A LCOR protein; MLR2, KIA 34.0 71 0.0024 22.5 4.8 37 28-67 19-55 (70)
15 2cy5_A Epidermal growth factor 33.8 69 0.0024 25.1 5.3 28 154-181 110-137 (140)
16 2g7r_A Mucosa-associated lymph 33.7 1.1E+02 0.0037 23.6 6.2 36 16-55 21-56 (117)
17 1sfu_A 34L protein; protein/Z- 33.3 69 0.0024 22.7 4.7 45 20-66 9-53 (75)
18 2pa8_L DNA-directed RNA polyme 32.7 59 0.002 23.4 4.4 59 115-175 29-88 (92)
19 3oio_A Transcriptional regulat 32.6 1.3E+02 0.0043 21.1 7.9 69 26-95 7-87 (113)
20 2jpc_A SSRB; DNA binding prote 31.1 94 0.0032 19.1 4.9 35 31-69 6-40 (61)
21 2elh_A CG11849-PA, LD40883P; s 30.9 60 0.0021 22.2 4.1 36 26-65 26-61 (87)
22 1r6f_A Virulence-associated V 30.2 62 0.0021 28.6 4.8 67 52-122 66-139 (310)
23 1oyi_A Double-stranded RNA-bin 28.9 46 0.0016 23.8 3.2 39 26-67 17-55 (82)
24 2dbf_A Nuclear factor NF-kappa 28.5 53 0.0018 24.2 3.5 36 16-55 9-44 (100)
25 3jvo_A GP6; 13-membered ring, 26.8 76 0.0026 23.4 4.2 61 7-72 12-72 (108)
26 3rhi_A DNA-binding protein HU; 26.6 74 0.0025 22.4 4.0 32 43-75 9-40 (93)
27 1mul_A NS2, HU-2, DNA binding 26.5 83 0.0028 21.8 4.2 33 43-76 6-38 (90)
28 1ku3_A Sigma factor SIGA; heli 26.1 97 0.0033 20.1 4.3 53 15-71 7-59 (73)
29 3ezq_B Protein FADD; apoptosis 25.9 76 0.0026 24.0 4.2 33 28-62 5-37 (122)
30 1qgp_A Protein (double strande 25.7 44 0.0015 22.9 2.5 36 31-67 19-56 (77)
31 1n1j_A NF-YB; histone-like PAI 25.0 1.8E+02 0.0062 20.4 5.9 39 57-95 34-80 (93)
32 3kor_A Possible Trp repressor; 24.8 50 0.0017 25.4 2.9 32 32-67 69-100 (119)
33 1xpp_A TA1416, DNA-directed RN 24.8 80 0.0028 23.9 4.1 61 112-176 37-98 (115)
34 1qbj_A Protein (double-strande 24.6 97 0.0033 21.6 4.2 36 31-67 15-52 (81)
35 1b8z_A Protein (histonelike pr 24.4 86 0.0029 21.7 3.9 33 43-76 6-38 (90)
36 3mn2_A Probable ARAC family tr 24.1 1.8E+02 0.0061 20.0 6.9 68 27-95 3-84 (108)
37 1twf_K B13.6, DNA-directed RNA 24.0 1E+02 0.0035 23.4 4.5 59 115-175 47-106 (120)
38 2o97_B NS1, HU-1, DNA-binding 23.6 96 0.0033 21.6 4.1 32 43-75 6-37 (90)
39 2iie_A Integration HOST factor 23.6 2.1E+02 0.007 23.2 6.7 53 22-75 26-83 (204)
40 3neu_A LIN1836 protein; struct 23.2 1.6E+02 0.0055 21.4 5.5 44 24-68 15-63 (125)
41 1fse_A GERE; helix-turn-helix 23.2 1.5E+02 0.005 18.7 4.7 35 32-70 20-54 (74)
42 3rgc_A Possible periplasmic pr 22.9 1.3E+02 0.0046 24.1 5.4 49 40-95 37-87 (252)
43 3u66_A SCIP/TSSL, putative typ 22.6 92 0.0032 25.1 4.3 35 43-78 45-79 (183)
44 1owf_A IHF-alpha, integration 22.5 1E+02 0.0035 21.8 4.1 33 43-76 8-40 (99)
45 1p71_A DNA-binding protein HU; 22.4 1E+02 0.0035 21.5 4.1 32 43-75 6-37 (94)
46 3c1l_A Putative antioxidant de 22.2 2.6E+02 0.009 21.3 7.1 69 24-95 69-153 (188)
47 3c4i_A DNA-binding protein HU 21.7 1.1E+02 0.0037 21.8 4.1 32 43-75 6-37 (99)
48 1zx4_A P1 PARB, plasmid partit 21.5 1.2E+02 0.0041 24.7 4.8 37 23-63 9-45 (192)
49 1exe_A Transcription factor 1; 20.8 1.1E+02 0.0039 21.7 4.1 32 43-75 6-37 (99)
50 1tty_A Sigma-A, RNA polymerase 20.6 1.4E+02 0.0046 20.2 4.3 52 15-70 15-66 (87)
51 1taf_A TFIID TBP associated fa 20.5 77 0.0026 21.8 2.9 48 17-65 17-65 (68)
52 2pfx_A Uncharacterized peroxid 20.1 3E+02 0.01 21.1 7.1 69 24-95 72-156 (191)
No 1
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=80.79 E-value=2.6 Score=31.59 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHhcCCchhhHHHHHhhc-CCCchHHHHHHHHHHHHHHHHHh
Q psy5629 33 NYLKDGPNQKLYKSVSKKL-SLPSADNVQDSVEGLVYFLLLAT 74 (203)
Q Consensus 33 efl~~G~n~K~y~~aA~KL-~v~~~~~Vq~~Ve~L~~Ll~ess 74 (203)
++=.+|++++.|..+|++| |.++ +.|.+=+.-||.||--++
T Consensus 47 ~cQ~~G~s~~tFa~iA~~L~Nks~-nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 47 MCQEQGAQPHTFSVISQQLGNKTP-VEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp HHHHTTSCTTTHHHHHHHHSSCCH-HHHHHHHHHHHHHHHHCS
T ss_pred HHHhcCCChhHHHHHHHHHccCCH-HHHHHHHHHHHHHHHHHh
Confidence 4456899999999999999 6999 999999999999987644
No 2
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=79.53 E-value=5.3 Score=29.26 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=54.4
Q ss_pred cccCCChHHHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhhcCCCC
Q psy5629 15 VLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQ 94 (203)
Q Consensus 15 fL~~~~~~vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~dsl~~l~F~e 94 (203)
.|..+++. -.+...+ .|.-.|.....|.-+|+.||++. .+|.+-..--..-|-+..+ ...+.+-+...|-||
T Consensus 16 aL~~Lp~r-eR~Vi~L--ry~l~~~e~~s~~EIA~~lgiS~-~tVr~~~~rAlkkLR~~~~----~~~l~~~~~~~~~~~ 87 (99)
T 3t72_q 16 VLAGLTAR-EAKVLRM--RFGIDMNTDYTLEEVGKQFDVTR-ERIRQIEAKALRKLRHPSR----SEVLRSGSSGSGTPE 87 (99)
T ss_pred HHHcCCHH-HHHHHHH--HHhcCCCCCCCHHHHHHHHCcCH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCH
Confidence 34555555 3333333 45445567788999999999999 8888777666665555433 456777888999999
Q ss_pred hhHHHHHHHHHH
Q psy5629 95 DDKCEKILYEFY 106 (203)
Q Consensus 95 e~~~~~vL~q~y 106 (203)
+ ++|...|
T Consensus 88 ~----~~~~~~~ 95 (99)
T 3t72_q 88 E----KLLRAIF 95 (99)
T ss_pred H----HHHHHHh
Confidence 9 6655444
No 3
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=80.30 E-value=0.4 Score=34.25 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=34.7
Q ss_pred HHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q psy5629 33 NYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLL 72 (203)
Q Consensus 33 efl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~e 72 (203)
++=.+|++++.|..+|++||=++ +.|.+=+..||.|+--
T Consensus 28 ~cq~~G~s~~tfa~iA~~Lnks~-~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 28 ECQKRGPSSKTFAYLAAKLDKNP-NQVSERFQQLMKLFEK 66 (70)
Confidence 44468999999999999999999 9999999999998743
No 4
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=49.41 E-value=15 Score=25.23 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=27.6
Q ss_pred HHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHH
Q psy5629 31 TTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGL 66 (203)
Q Consensus 31 Aiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L 66 (203)
-++||++...--...-.|+++||+. +.|-.+...|
T Consensus 15 lL~yIr~sGGildI~~~a~kygV~k-deV~~~LrrL 49 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVYGVEK-QEVVKLLEAL 49 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred HHHHHHHcCCEEeHHHHHHHhCCCH-HHHHHHHHHH
Confidence 4678888776666778999999999 8887766555
No 5
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=48.24 E-value=38 Score=25.09 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=58.5
Q ss_pred ecchhhHhhhccccCCChHHHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhccCChhhh
Q psy5629 4 NLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDF 83 (203)
Q Consensus 4 ~Ls~~hkehL~fL~~~~~~vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF 83 (203)
.++++|-+++.=.-+++.. ..++|--|...|-++. .+|++||++. -+|.+.+.-.-..+.. + . -+.+|
T Consensus 4 rmT~~eFe~~~~~l~~~~~----~~~~A~lyYv~g~tQ~---eIA~~lGiSR-~~VsrlL~~Ar~~~~~--~-~-~P~g~ 71 (101)
T 2w7n_A 4 RLTESQFQEAIQGLEVGQQ----TIEIARGVLVDGKPQA---TFATSLGLTR-GAVSQAVHRVWAAFED--K-N-LPEGY 71 (101)
T ss_dssp CCCHHHHHHHHTTCCCCHH----HHHHHHHHHTTCCCHH---HHHHHHTCCH-HHHHHHHHHHHHHHHH--T-C-CCTTE
T ss_pred cCCHHHHHHHHccCChHHH----HHHHHHHHHHcCCCHH---HHHHHHCCCH-HHHHHHHHHHHHHHhc--c-C-CCCCe
Confidence 4677777776644456554 3788999999999887 8999999999 8888877665544432 1 1 22334
Q ss_pred hhhhhhcCCCChhHHHHHHHHHHHHHH
Q psy5629 84 CNTLYHMGFTQDDKCEKILYEFYTQEK 110 (203)
Q Consensus 84 ~dsl~~l~F~ee~~~~~vL~q~y~~~r 110 (203)
.- -..-.|++ ...++.+.-.+.+
T Consensus 72 ~r--v~v~lP~~--~a~~v~~~~~~a~ 94 (101)
T 2w7n_A 72 AR--VTAVLPEH--QAYIVRKWEADAK 94 (101)
T ss_dssp EE--EEEEECHH--HHHHHHHHHHHHH
T ss_pred eE--EeeecCHH--HHHHHHHHHHHHH
Confidence 32 23345566 5555555555443
No 6
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=47.30 E-value=30 Score=26.44 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCC------chhhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHh
Q psy5629 27 FCTLTTNYLKDGP------NQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLAT 74 (203)
Q Consensus 27 fckiAiefl~~G~------n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~ess 74 (203)
+.+-|+......+ ....|...|+|+++++ ..|++++.-.+.......
T Consensus 28 Yl~~AI~l~~~d~~~l~~itK~LYp~IA~k~~TT~-s~VEraIR~aIe~aw~~g 80 (120)
T 1fc3_A 28 YLREAIAMVYHDIELLGSITKVLYPDIAKKYNTTA-SRVERAIRHAIEVAWSRG 80 (120)
T ss_dssp HHHHHHHHHHHCGGGGGGTTTTHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHCC
Confidence 4556666665543 3458999999999999 999999987776665543
No 7
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=46.96 E-value=34 Score=19.56 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=21.9
Q ss_pred HHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHH
Q psy5629 30 LTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSV 63 (203)
Q Consensus 30 iAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~V 63 (203)
.++.++..|-. +..+|+.+|++. .+|.+.+
T Consensus 13 ~i~~~~~~g~s---~~~IA~~lgis~-~Tv~~~~ 42 (51)
T 1tc3_C 13 QLDVMKLLNVS---LHEMSRKISRSR-HCIRVYL 42 (51)
T ss_dssp HHHHHHHTTCC---HHHHHHHHTCCH-HHHHHHH
T ss_pred HHHHHHHcCCC---HHHHHHHHCcCH-HHHHHHH
Confidence 34445566643 668999999999 8888765
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=44.80 E-value=14 Score=24.67 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=26.7
Q ss_pred HHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHH
Q psy5629 31 TTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLV 67 (203)
Q Consensus 31 Aiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~ 67 (203)
-+++|.+...+-...-+|+.+|++. .+|.+.+..|-
T Consensus 15 IL~~L~~~~~~~s~~eLA~~lglsr-~tv~~~l~~L~ 50 (67)
T 2heo_A 15 ILQVLSDDGGPVAIFQLVKKCQVPK-KTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHCSCH-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHCcCH-HHHHHHHHHHH
Confidence 4566655334456789999999999 88888877764
No 9
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=42.40 E-value=36 Score=21.64 Aligned_cols=38 Identities=8% Similarity=0.190 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCc-hhhHHHHHhhcCCCchHHHHHHHH
Q psy5629 26 DFCTLTTNYLKDGPN-QKLYKSVSKKLSLPSADNVQDSVE 64 (203)
Q Consensus 26 efckiAiefl~~G~n-~K~y~~aA~KL~v~~~~~Vq~~Ve 64 (203)
||=.-|.+++..|.. ...+..+|+++||++ .+|.+=+.
T Consensus 9 efK~~~~~~~~~g~s~~~~~~~vA~~~gIs~-~tl~~W~~ 47 (59)
T 2glo_A 9 HFKLQVLESYRNDNDCKGNQRATARKYNIHR-RQIQKWLQ 47 (59)
T ss_dssp HHHHHHHHHHHHCTTTTTCHHHHHHHTTSCH-HHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHCcCH-HHHHHHHH
Confidence 343344677777753 223779999999998 88877654
No 10
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=37.96 E-value=26 Score=20.52 Aligned_cols=31 Identities=6% Similarity=0.113 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHH
Q psy5629 29 TLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSV 63 (203)
Q Consensus 29 kiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~V 63 (203)
..+++++..| ..+..+|+.+||+. .+|.+.+
T Consensus 12 ~~i~~l~~~g---~s~~~ia~~lgvs~-~Tv~r~l 42 (52)
T 1jko_C 12 EQISRLLEKG---HPRQQLAIIFGIGV-STLYRYF 42 (52)
T ss_dssp HHHHHHHHTT---CCHHHHHHTTSCCH-HHHHHHS
T ss_pred HHHHHHHHcC---CCHHHHHHHHCCCH-HHHHHHH
Confidence 3455556667 34568999999999 8887653
No 11
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=37.32 E-value=62 Score=21.00 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhhcCCC
Q psy5629 26 DFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFT 93 (203)
Q Consensus 26 efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~dsl~~l~F~ 93 (203)
+-.+..+.++..|- .|..+|+.+|++. .+|..-+.-+..-|-.. +..++..-...+|++
T Consensus 19 ~~e~~vl~l~~~g~---s~~eIA~~l~is~-~tV~~~~~r~~~kl~~~-----~~~~l~~~~~~~g~~ 77 (79)
T 1x3u_A 19 ERERQVLSAVVAGL---PNKSIAYDLDISP-RTVEVHRANVMAKMKAK-----SLPHLVRMALAGGFG 77 (79)
T ss_dssp HHHHHHHHHHTTTC---CHHHHHHHTTSCH-HHHHHHHHHHHHHTTCC-----SHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHCcCH-HHHHHHHHHHHHHHcCC-----CHHHHHHHHHHhCCC
Confidence 33555566655554 4559999999999 88887766554433221 224444444455655
No 12
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=36.81 E-value=1.1e+02 Score=21.67 Aligned_cols=68 Identities=7% Similarity=0.131 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCchh-hHHHHHhhcCCCchHHHHHHHHH--------HHHHHHHHhhccC--ChhhhhhhhhhcCCCCh
Q psy5629 27 FCTLTTNYLKDGPNQK-LYKSVSKKLSLPSADNVQDSVEG--------LVYFLLLATILNI--SEYDFCNTLYHMGFTQD 95 (203)
Q Consensus 27 fckiAiefl~~G~n~K-~y~~aA~KL~v~~~~~Vq~~Ve~--------L~~Ll~essK~~i--se~dF~dsl~~l~F~ee 95 (203)
+..-+++||....... ..+.+|+.+|+++ ..+++.+.. +..+=++-++..+ ++....+.-..+||++.
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~-~~l~r~fk~~G~s~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~ 86 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSP-SLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSV 86 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCH-HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCH
Confidence 4456677887775443 4778999999999 888887643 2333334333222 44556666677899988
No 13
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=36.68 E-value=59 Score=19.85 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHH
Q psy5629 28 CTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSV 63 (203)
Q Consensus 28 ckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~V 63 (203)
.+.+..+...|- .+..+|+.+|++. .+|.+.+
T Consensus 21 ~~~i~~l~~~g~---s~~eIA~~lgis~-~TV~~~l 52 (55)
T 2x48_A 21 VSVAHELAKMGY---TVQQIANALGVSE-RKVRRYL 52 (55)
T ss_dssp HHHHHHHHHTTC---CHHHHHHHHTSCH-HHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHCcCH-HHHHHHH
Confidence 445555556665 4568999999999 8887754
No 14
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=34.00 E-value=71 Score=22.47 Aligned_cols=37 Identities=8% Similarity=0.110 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHH
Q psy5629 28 CTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLV 67 (203)
Q Consensus 28 ckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~ 67 (203)
.-.|++=+++|. -....||+++|||. -+++.=|.+..
T Consensus 19 L~~Ai~aVr~g~--mS~~~Aak~yGVP~-sTL~~RVk~~~ 55 (70)
T 2cob_A 19 LEEAISVVMSGK--MSVSKAQSIYGIPH-STLEYKVKERL 55 (70)
T ss_dssp HHHHHHHHHTTS--SCHHHHHHHHTCCH-HHHHHHHHHHT
T ss_pred HHHHHHHHHcCC--ccHHHHHHHhCCCh-HHHHHHHHhhc
Confidence 345888889986 34568999999999 99998887754
No 15
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Probab=33.85 E-value=69 Score=25.15 Aligned_cols=28 Identities=11% Similarity=-0.029 Sum_probs=23.8
Q ss_pred ceeecChhHHHHHHHHHHHHHHHhhhhh
Q psy5629 154 IDLEMDVRSVLNITQILEEALSHAKLNQ 181 (203)
Q Consensus 154 ~~LqTDp~~L~hl~~~LE~AL~e~kT~h 181 (203)
|+||||-..=-++..-|+.||+..|+..
T Consensus 110 H~FQc~ev~A~~v~~di~~al~~~~~gk 137 (140)
T 2cy5_A 110 HFFQGLLLGAELIREDIQGALQNYRSGR 137 (140)
T ss_dssp EEEEECTTHHHHHHHHHHHHHHHHC---
T ss_pred EEEEeccccHHHHHHHHHHHHHHhhccc
Confidence 6999999999999999999999998865
No 16
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death domain, chromosomal translocation, hydrolase; 2.70A {Homo sapiens}
Probab=33.75 E-value=1.1e+02 Score=23.57 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=24.8
Q ss_pred ccCCChHHHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCc
Q psy5629 16 LFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPS 55 (203)
Q Consensus 16 L~~~~~~vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~ 55 (203)
+..+++++++++|.+ |.+.++.|-|..+|++++-..
T Consensus 21 l~~L~e~~L~~Lc~l----LD~~~~~kGWrkLAe~l~~~~ 56 (117)
T 2g7r_A 21 LNRLREPLLRRLSEL----LDQAPEGRGWRRLAELAGSRG 56 (117)
T ss_dssp GGGSCHHHHHHHHHH----HTCC----CHHHHHHHCC---
T ss_pred hhhCCHHHHHHHHHH----HcCCCcCCCHHHHHHHhcccc
Confidence 567889999999974 666677799999999998765
No 17
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=33.29 E-value=69 Score=22.71 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHH
Q psy5629 20 PPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGL 66 (203)
Q Consensus 20 ~~~vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L 66 (203)
+.-.+.+..+-|+.+|..|... .-..+|++||++. -.|.+.+..|
T Consensus 9 ~~~~~~~~v~~~i~~L~~~~~~-Ta~~IAkkLg~sK-~~vNr~LY~L 53 (75)
T 1sfu_A 9 NDAEIFSLVKKEVLSLNTNDYT-TAISLSNRLKINK-KKINQQLYKL 53 (75)
T ss_dssp CSHHHHHHHHHHHHTSCTTCEE-CHHHHHHHTTCCH-HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCcch-HHHHHHHHHCCCH-HHHHHHHHHH
Confidence 4445677778888888866532 3458999999999 7777765544
No 18
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=32.73 E-value=59 Score=23.43 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=37.2
Q ss_pred HHhhhhhh-heecccccccccCceEEEEEeecCCCcccccceeecChhHHHHHHHHHHHHHH
Q psy5629 115 RTLISEYI-SVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALS 175 (203)
Q Consensus 115 r~iLs~~~-vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~~~LqTDp~~L~hl~~~LE~AL~ 175 (203)
|..|.+.+ |..|+=+..+-..|.+.+++.|.. +....+ .|.-=...|..+++.+++...
T Consensus 29 r~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~-~~~p~~-al~~a~~~l~~~~~~~~~~f~ 88 (92)
T 2pa8_L 29 AGTLRRISGVSFASYYQPHPLSDKIIVKILTDG-SITPKD-ALLKAIENIRGMTSHYIDEIK 88 (92)
T ss_dssp HHHHHTSTTEEEEEEECSSTTSCCEEEEEEECS-SSCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeeEEEeecCCCCCCceEEEEEECC-CCCHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 55555554 999999998888999999998863 222333 344334445555555554443
No 19
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=32.64 E-value=1.3e+02 Score=21.06 Aligned_cols=69 Identities=6% Similarity=0.043 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCchh-hHHHHHhhcCCCchHHHHHHHHHH---------HHHHHHHhhccC--ChhhhhhhhhhcCCC
Q psy5629 26 DFCTLTTNYLKDGPNQK-LYKSVSKKLSLPSADNVQDSVEGL---------VYFLLLATILNI--SEYDFCNTLYHMGFT 93 (203)
Q Consensus 26 efckiAiefl~~G~n~K-~y~~aA~KL~v~~~~~Vq~~Ve~L---------~~Ll~essK~~i--se~dF~dsl~~l~F~ 93 (203)
+...-+++||....... .-+.+|+.+|+++ ..+++.+... ..+=++-++..+ ++....+.-...||+
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~-~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~ 85 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSR-RQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTSKSIVQIGLACGFS 85 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCH-HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCC
Confidence 34556788898885543 4778999999998 8888877654 111122222222 233444545668999
Q ss_pred Ch
Q psy5629 94 QD 95 (203)
Q Consensus 94 ee 95 (203)
+.
T Consensus 86 ~~ 87 (113)
T 3oio_A 86 SG 87 (113)
T ss_dssp CH
T ss_pred CH
Confidence 88
No 20
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.15 E-value=94 Score=19.11 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=24.9
Q ss_pred HHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy5629 31 TTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYF 69 (203)
Q Consensus 31 Aiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~L 69 (203)
.+.++..|-+. ..+|+.||+++ .+|..-+..+..-
T Consensus 6 vl~l~~~g~s~---~eIA~~l~is~-~tV~~~~~~~~~k 40 (61)
T 2jpc_A 6 VLKLIDEGYTN---HGISEKLHISI-KTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHTSCCS---HHHHHHTCSCH-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCH---HHHHHHhCCCH-HHHHHHHHHHHHH
Confidence 34445666544 48999999999 9998877665543
No 21
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=30.93 E-value=60 Score=22.23 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHH
Q psy5629 26 DFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEG 65 (203)
Q Consensus 26 efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~ 65 (203)
||-..|++++..|. .+..+|+++||+. .+|.+-+..
T Consensus 26 e~k~~~v~~~~~g~---s~~~iA~~~gIs~-sTl~rW~k~ 61 (87)
T 2elh_A 26 RDKIHAIQRIHDGE---SKASVARDIGVPE-STLRGWCKN 61 (87)
T ss_dssp HHHHHHHHHHHHTC---CHHHHHHHHTCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---CHHHHHHHHCcCH-HHHHHHHHH
Confidence 45455666665663 4668999999999 899887653
No 22
>1r6f_A Virulence-associated V antigen; coiled-coil, protein binding; 2.17A {Yersinia pestis} SCOP: e.46.1.1
Probab=30.20 E-value=62 Score=28.63 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=50.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhh-c---CCCChhHHHHHHHHHHH---HHHHhHHHHhhhhhh
Q psy5629 52 SLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYH-M---GFTQDDKCEKILYEFYT---QEKYNLYRTLISEYI 122 (203)
Q Consensus 52 ~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~dsl~~-l---~F~ee~~~~~vL~q~y~---~~r~~I~r~iLs~~~ 122 (203)
||.. .++++|++.|-.++-.+.+...+-.||..++.. + -|.|+ +..++.+... ++|+++ +.-|.++.
T Consensus 66 g~~d-~q~k~Gi~~lk~~l~~~~~t~~T~rdfLav~~~slt~dR~Ddd--Vi~a~~~~m~~~~~KR~~l-k~eL~~LT 139 (310)
T 1r6f_A 66 GHYD-NQLQNGIKRVKEFLESSPNTQWELRAFMAVMHFSLTADRIDDD--ILKVIVDSMNHHGDARSKL-REELAELT 139 (310)
T ss_dssp CC-C-HHHHHHHHHHHHHHHHSSCSEEEHHHHHHHHHHHHSTTCCCHH--HHHHHHHHHHTTCCHHHHH-HHHHHHHH
T ss_pred Cchh-HHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHhccCcccccHH--HHHHHHHHHhhhHHHHHHH-HHHHHHHH
Confidence 7888 999999999999999999999999999976654 2 35555 6666655543 467777 77776663
No 23
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=28.95 E-value=46 Score=23.83 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHH
Q psy5629 26 DFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLV 67 (203)
Q Consensus 26 efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~ 67 (203)
+.-.--++||.... ..+..+|++||++. .+|++-+..|-
T Consensus 17 ~~~~~IL~lL~~~g--~sa~eLAk~LgiSk-~aVr~~L~~Le 55 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG--ATAAQLTRQLNMEK-REVNKALYDLQ 55 (82)
T ss_dssp HHHHHHHHHHSSST--EEHHHHHHHSSSCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCH-HHHHHHHHHHH
Confidence 33444457888544 77899999999999 88888777663
No 24
>2dbf_A Nuclear factor NF-kappa-B P105 subunit; apoptosis, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.51 E-value=53 Score=24.22 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=28.4
Q ss_pred ccCCChHHHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCc
Q psy5629 16 LFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPS 55 (203)
Q Consensus 16 L~~~~~~vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~ 55 (203)
+..++..+.+.+|+ +|..+...+-|...|++||.+.
T Consensus 9 l~~L~~~~r~kL~~----lLd~~~~~~dWr~LAe~Lg~~~ 44 (100)
T 2dbf_A 9 MKQLAEDVKLQLYK----LLEIPDPDKNWATLAQKLGLGI 44 (100)
T ss_dssp CTTSCHHHHHHHHH----HHTSCCTTSSHHHHHHHHTCGG
T ss_pred hhhCCHHHHHHHHH----HhCCCCCCCCHHHHHHHHCcHH
Confidence 45678888999997 4665544578999999999977
No 25
>3jvo_A GP6; 13-membered ring, viral protein; HET: MSE; 2.10A {Enterobacteria phage HK97}
Probab=26.83 E-value=76 Score=23.40 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=47.0
Q ss_pred hhhHhhhccccCCChHHHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q psy5629 7 ESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLL 72 (203)
Q Consensus 7 ~~hkehL~fL~~~~~~vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~e 72 (203)
++-|.||-+=..-+.+.+..++.-|.+|+.+-.+.+.|.. .-++ + +.++.||--|+.-+-+
T Consensus 12 ee~K~~LRid~d~dD~li~~li~AA~~~~~~~~~~~~~~~---~~~~-~-~~~k~AvLlLva~~Ye 72 (108)
T 3jvo_A 12 SLFKQQIEFEEDDRDELITLYAQAAFDYCMRWCDEPAWKV---AADI-P-AAVKGAVLLVFADMFE 72 (108)
T ss_dssp HHHHHHTTCCCSTTHHHHHHHHHHHHHHHHHHHTCTTCCS---GGGS-C-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCccHHHHHHHHHHHHHHHHHHhCCccccc---cccC-C-HHHHHHHHHHHHHHHh
Confidence 5789999998888889999999999999998877766532 1233 5 6788888777766655
No 26
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=26.60 E-value=74 Score=22.42 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=28.8
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhh
Q psy5629 43 LYKSVSKKLSLPSADNVQDSVEGLVYFLLLATI 75 (203)
Q Consensus 43 ~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK 75 (203)
..+.+|++.+++. .+++..|+++...+.++.+
T Consensus 9 Li~~ia~~~~lsk-~~~~~~v~~~~~~i~~~L~ 40 (93)
T 3rhi_A 9 LIKNVAQNAEISQ-KEATVVVQTVVESITNTLA 40 (93)
T ss_dssp HHHHHHHHHTCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHh
Confidence 5678899999999 9999999999999998776
No 27
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=26.48 E-value=83 Score=21.84 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=28.5
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhc
Q psy5629 43 LYKSVSKKLSLPSADNVQDSVEGLVYFLLLATIL 76 (203)
Q Consensus 43 ~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~ 76 (203)
..+.+|++.+++. .++...|+++...+.++.+-
T Consensus 6 li~~ia~~~~ls~-~~~~~~l~~~~~~i~~~L~~ 38 (90)
T 1mul_A 6 LIDVIAEKAELSK-TQAKAALESTLAAITESLKE 38 (90)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHhC
Confidence 4568889999999 99999999999999987653
No 28
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=26.11 E-value=97 Score=20.09 Aligned_cols=53 Identities=8% Similarity=-0.002 Sum_probs=33.0
Q ss_pred cccCCChHHHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q psy5629 15 VLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLL 71 (203)
Q Consensus 15 fL~~~~~~vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~ 71 (203)
.|..+++. -.+.... .|.-.|.....|.-+|+.+|++. .+|.+-..-...-|-
T Consensus 7 ~l~~L~~~-er~il~l--~~~l~~~~~~s~~eIA~~l~is~-~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 7 ALSKLSER-EAMVLKM--RKGLIDGREHTLEEVGAYFGVTR-ERIRQIENKALRKLK 59 (73)
T ss_dssp STTTSCHH-HHHHHHH--HHTTTTSSCCCHHHHHHHHTCCH-HHHHHHHHHHHHHHH
T ss_pred HHHhCCHH-HHHHHHH--HHhcccCCCCCHHHHHHHHCCCH-HHHHHHHHHHHHHHH
Confidence 34555554 2333332 34334445677889999999999 888886665554443
No 29
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=25.93 E-value=76 Score=23.96 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHH
Q psy5629 28 CTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDS 62 (203)
Q Consensus 28 ckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~ 62 (203)
.+-.+++|..... +.|...|++||++. ..|+..
T Consensus 5 L~~~f~~Ia~~lG-~~Wk~LAR~LGlse-~dId~I 37 (122)
T 3ezq_B 5 LCAAFNVICDNVG-KDWRRLARQLKVSD-TKIDSI 37 (122)
T ss_dssp HHHHHHHHHTTCC-TTHHHHHHHTTCCH-HHHHHH
T ss_pred HHHHHHHHHHhhh-hhHHHHHHHhCCCH-HHHHHH
Confidence 3557888887766 78999999999998 777654
No 30
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.74 E-value=44 Score=22.94 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=26.7
Q ss_pred HHHHHhcCCc--hhhHHHHHhhcCCCchHHHHHHHHHHH
Q psy5629 31 TTNYLKDGPN--QKLYKSVSKKLSLPSADNVQDSVEGLV 67 (203)
Q Consensus 31 Aiefl~~G~n--~K~y~~aA~KL~v~~~~~Vq~~Ve~L~ 67 (203)
-+++|...++ .-.+.-+|++||++. -+|++.+..|-
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs~-~tV~~~L~~L~ 56 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTPK-KEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCCH-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCH-HHHHHHHHHHH
Confidence 4466665553 345789999999999 88888877663
No 31
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=25.01 E-value=1.8e+02 Score=20.41 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHH-HHHHH-------hhccCChhhhhhhhhhcCCCCh
Q psy5629 57 DNVQDSVEGLVY-FLLLA-------TILNISEYDFCNTLYHMGFTQD 95 (203)
Q Consensus 57 ~~Vq~~Ve~L~~-Ll~es-------sK~~ise~dF~dsl~~l~F~ee 95 (203)
+.++.|.+.-+. |..+| -|-.|+..|+...+..+||.+.
T Consensus 34 ~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~ 80 (93)
T 1n1j_A 34 ECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSY 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhh
Confidence 556666665443 33334 3458999999999999999976
No 32
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=24.85 E-value=50 Score=25.43 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=25.9
Q ss_pred HHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHH
Q psy5629 32 TNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLV 67 (203)
Q Consensus 32 iefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~ 67 (203)
+..|.+| +.|.-+|+++|++. .+|.++-..|-
T Consensus 69 ~klL~~G---~syreIA~~~g~S~-aTIsRv~r~L~ 100 (119)
T 3kor_A 69 AKMIKQG---YTYATIEQESGAST-ATISRVKRSLQ 100 (119)
T ss_dssp HHHHHHT---CCHHHHHHHHCCCH-HHHHHHHHHHH
T ss_pred HHHHHcC---CCHHHHHHHHCCCH-HHHHHHHHHHh
Confidence 4457777 77889999999999 99998776553
No 33
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=24.82 E-value=80 Score=23.87 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=38.5
Q ss_pred hHHHHhhhhhh-heecccccccccCceEEEEEeecCCCcccccceeecChhHHHHHHHHHHHHHHH
Q psy5629 112 NLYRTLISEYI-SVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALSH 176 (203)
Q Consensus 112 ~I~r~iLs~~~-vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~~~LqTDp~~L~hl~~~LE~AL~e 176 (203)
-| |..|.+.+ |..|+=+..+-..|.+.+++.|.. +. ..+ .|.-=...|..+++.|++....
T Consensus 37 lL-r~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~-~~-p~e-aL~~al~~L~~~~~~l~~~f~~ 98 (115)
T 1xpp_A 37 TL-VEEILKDDQVDEARYYIKHPVIDNPQIYVRVKS-GK-PQS-AIKRAVRKLSKLYEDLGTQFQK 98 (115)
T ss_dssp HH-HHHHTTCTTEEEEEEECSSTTTSCCEEEEEESS-SC-HHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHhcCCCeEEEEeecCCCCCCccEEEEEeCC-CC-hHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34 66666654 999999998888899999998853 33 444 4444444454444444444433
No 34
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=24.55 E-value=97 Score=21.60 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=25.4
Q ss_pred HHHHHhc-CCc-hhhHHHHHhhcCCCchHHHHHHHHHHH
Q psy5629 31 TTNYLKD-GPN-QKLYKSVSKKLSLPSADNVQDSVEGLV 67 (203)
Q Consensus 31 Aiefl~~-G~n-~K~y~~aA~KL~v~~~~~Vq~~Ve~L~ 67 (203)
-+++|.. ||. .-.+..+|++||++. -+|++.+..|-
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr-~tV~~~L~~Le 52 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPK-KEINRVLYSLA 52 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCH-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCH-HHHHHHHHHHH
Confidence 3455553 322 346889999999999 88888876653
No 35
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=24.36 E-value=86 Score=21.71 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=28.7
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhc
Q psy5629 43 LYKSVSKKLSLPSADNVQDSVEGLVYFLLLATIL 76 (203)
Q Consensus 43 ~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~ 76 (203)
..+.+|++.+++. .++...|+++...+.++.+-
T Consensus 6 li~~ia~~~~ls~-~~~~~~l~~~~~~i~~~L~~ 38 (90)
T 1b8z_A 6 LIDRVAKKAGAKK-KDVKLILDTILETITEALAK 38 (90)
T ss_dssp HHHHHHHHHTCCH-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHhC
Confidence 4568889999999 99999999999999987763
No 36
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=24.10 E-value=1.8e+02 Score=20.00 Aligned_cols=68 Identities=10% Similarity=0.051 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCchh-hHHHHHhhcCCCchHHHHHHHHHH---------HHHHHH-HhhccCChh---hhhhhhhhcCC
Q psy5629 27 FCTLTTNYLKDGPNQK-LYKSVSKKLSLPSADNVQDSVEGL---------VYFLLL-ATILNISEY---DFCNTLYHMGF 92 (203)
Q Consensus 27 fckiAiefl~~G~n~K-~y~~aA~KL~v~~~~~Vq~~Ve~L---------~~Ll~e-ssK~~ise~---dF~dsl~~l~F 92 (203)
...-+++||....... .-+.+|+.+|+++ ..+++.+... ..+=++ +.++..+.. ...+.-...||
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~-~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf 81 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISS-RGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGF 81 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCH-HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCC
Confidence 3455667777664333 4678899999998 8888877654 111122 222222221 34555566899
Q ss_pred CCh
Q psy5629 93 TQD 95 (203)
Q Consensus 93 ~ee 95 (203)
++.
T Consensus 82 ~~~ 84 (108)
T 3mn2_A 82 SNL 84 (108)
T ss_dssp CCH
T ss_pred CCH
Confidence 988
No 37
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=23.95 E-value=1e+02 Score=23.35 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHhhhhhh-heecccccccccCceEEEEEeecCCCcccccceeecChhHHHHHHHHHHHHHH
Q psy5629 115 RTLISEYI-SVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALS 175 (203)
Q Consensus 115 r~iLs~~~-vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~~~LqTDp~~L~hl~~~LE~AL~ 175 (203)
|..|.+.+ |..|+=+..+-..+.+.+++.|..+ ....+ .|.-=...|..+++.|++...
T Consensus 47 r~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~-~~p~e-aL~~a~~~L~~~~~~l~~~f~ 106 (120)
T 1twf_K 47 RAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEG-YDPKD-ALKNACNSIINKLGALKTNFE 106 (120)
T ss_dssp HHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTT-CCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCeeEEeeecCCCCCCccEEEEEECCC-CCHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 66666654 9999999999999999999988632 22333 333334444444444444443
No 38
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=23.65 E-value=96 Score=21.56 Aligned_cols=32 Identities=3% Similarity=0.104 Sum_probs=27.2
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhh
Q psy5629 43 LYKSVSKKLSLPSADNVQDSVEGLVYFLLLATI 75 (203)
Q Consensus 43 ~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK 75 (203)
..+.+|++.+++. .++...|+++...+.++.+
T Consensus 6 li~~ia~~~~ls~-~~~~~~l~~~~~~i~~~L~ 37 (90)
T 2o97_B 6 LIDKIAAGADISK-AAAGRALDAIIASVTESLK 37 (90)
T ss_dssp HHHHHHHTTC-CH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 4568889999999 9999999999999998765
No 39
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=23.62 E-value=2.1e+02 Score=23.25 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhcCC-----chhhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhh
Q psy5629 22 EVIQDFCTLTTNYLKDGP-----NQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATI 75 (203)
Q Consensus 22 ~vv~efckiAiefl~~G~-----n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK 75 (203)
.+|..++...-+-|.++. .....+.+|++.+++. .++...|+++...+.++.+
T Consensus 26 ~~Ve~~l~~i~~~L~~~~~~~Mtk~eLi~~ia~~~~lsk-~da~~vl~~l~~~i~~~L~ 83 (204)
T 2iie_A 26 DAVKEMLEHMASTLAQGGSGGLTKAEMSEYLFDKLGLSK-RDAKELVELFFEEIRRALE 83 (204)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSBCHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHh
Confidence 355556666666665432 2335888999999999 9999999999999988754
No 40
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.21 E-value=1.6e+02 Score=21.45 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcC---Cchhh--HHHHHhhcCCCchHHHHHHHHHHHH
Q psy5629 24 IQDFCTLTTNYLKDG---PNQKL--YKSVSKKLSLPSADNVQDSVEGLVY 68 (203)
Q Consensus 24 v~efckiAiefl~~G---~n~K~--y~~aA~KL~v~~~~~Vq~~Ve~L~~ 68 (203)
...+...-.+.|.+| |..+. -..+|+.|||+. .+|.+|+.-|..
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr-~tvr~Al~~L~~ 63 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNP-NTVSRAYQELER 63 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCH-HHHHHHHHHHHH
Confidence 444444455666666 34444 568999999999 999998877653
No 41
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=23.17 E-value=1.5e+02 Score=18.71 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=25.2
Q ss_pred HHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy5629 32 TNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFL 70 (203)
Q Consensus 32 iefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll 70 (203)
+.++..|- .+..+|+.+|++. .+|..-+..+..-|
T Consensus 20 l~~~~~g~---s~~eIA~~l~is~-~tV~~~~~~~~~kl 54 (74)
T 1fse_A 20 FELLVQDK---TTKEIASELFISE-KTVRNHISNAMQKL 54 (74)
T ss_dssp HHHHTTTC---CHHHHHHHHTSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHcCC---CHHHHHHHHCCCH-HHHHHHHHHHHHHH
Confidence 34445555 4569999999999 89888777665444
No 42
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=22.86 E-value=1.3e+02 Score=24.14 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=34.4
Q ss_pred chhhHHHHHhhcCC--CchHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhhcCCCCh
Q psy5629 40 NQKLYKSVSKKLSL--PSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQD 95 (203)
Q Consensus 40 n~K~y~~aA~KL~v--~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~dsl~~l~F~ee 95 (203)
+.+.....|+++|+ +. +.|++++..+. ...++|+.+|...|...|++++
T Consensus 37 ~~~ll~q~A~~~gi~vsd-~ev~~~i~~~~------~~~~~s~~~~~~~L~~~g~t~~ 87 (252)
T 3rgc_A 37 NEKMEISQMKQLGIVVND-LELDDAINKML------AQNKTTLNAFKANLKSKNQSYE 87 (252)
T ss_dssp HHHHHHHHHHHTTCCCCH-HHHHHHHHHHH------HHTTCCHHHHHHHTCC---CHH
T ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHH------HHcCCCHHHHHHHHHHcCCCHH
Confidence 45666677887765 56 78888888753 3566799999999988898865
No 43
>3u66_A SCIP/TSSL, putative type VI secretion protein; duble helical bundle, protein secretion, attached to inner M unknown function; 2.63A {Escherichia coli}
Probab=22.58 E-value=92 Score=25.06 Aligned_cols=35 Identities=3% Similarity=-0.084 Sum_probs=31.2
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhccC
Q psy5629 43 LYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNI 78 (203)
Q Consensus 43 ~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~~i 78 (203)
.++..+++.|++. +.|+.+..+++.++-|++-...
T Consensus 45 ~~e~~~~~~g~~~-~~i~~a~YalCa~lDE~vl~~~ 79 (183)
T 3u66_A 45 QAREELAEAGFSQ-KSSDIMLYAFCALLDESVLNRE 79 (183)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCCH-HHHHHhHHHHHHHHHHHHhcCC
Confidence 3778899999999 9999999999999999887653
No 44
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=22.51 E-value=1e+02 Score=21.84 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=28.4
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhc
Q psy5629 43 LYKSVSKKLSLPSADNVQDSVEGLVYFLLLATIL 76 (203)
Q Consensus 43 ~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~ 76 (203)
..+.+|++.+++. .++...|+++...+.++.+-
T Consensus 8 li~~ia~~~~ls~-~~~~~vl~~~~~~i~~~L~~ 40 (99)
T 1owf_A 8 MSEYLFDKLGLSK-RDAKELVELFFEEIRRALEN 40 (99)
T ss_dssp HHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHhC
Confidence 4668889999999 99999999999999887653
No 45
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=22.43 E-value=1e+02 Score=21.55 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=27.7
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhh
Q psy5629 43 LYKSVSKKLSLPSADNVQDSVEGLVYFLLLATI 75 (203)
Q Consensus 43 ~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK 75 (203)
..+.+|++.+++. .++...|+++...+.++.+
T Consensus 6 li~~ia~~~~ls~-~~~~~~l~~~~~~i~~~L~ 37 (94)
T 1p71_A 6 LVDAVAEKASVTK-KQADAVLTAALETIIEAVS 37 (94)
T ss_dssp HHHHHHHHHTCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHh
Confidence 4567889999999 9999999999999988765
No 46
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=22.22 E-value=2.6e+02 Score=21.28 Aligned_cols=69 Identities=14% Similarity=0.053 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCch-hhHHHHHhhcCCCchHHHHHHH---------------HHHHHHHHHHhhccCChhhhhhhh
Q psy5629 24 IQDFCTLTTNYLKDGPNQ-KLYKSVSKKLSLPSADNVQDSV---------------EGLVYFLLLATILNISEYDFCNTL 87 (203)
Q Consensus 24 v~efckiAiefl~~G~n~-K~y~~aA~KL~v~~~~~Vq~~V---------------e~L~~Ll~essK~~ise~dF~dsl 87 (203)
..|+..+++..++.-.-- ......|++.|++. +.+.... -.++.-++... -.+++.+|.. +
T Consensus 69 ~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~-~~i~~l~~~~~~~~~~~~e~a~l~~a~~lt~~~-~~v~d~~~~~-l 145 (188)
T 3c1l_A 69 DREMIAVAVSSINHCYYCLTAHGAAVRQLSGDP-ALGEMLVMNFRAADLSPRQTAMLEFAVKLTEEP-AKIVEADRAA-L 145 (188)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCH-HHHHHHHHCGGGGCCCHHHHHHHHHHHHHHHCG-GGCCHHHHHH-H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCH-HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCc-CCCCHHHHHH-H
Confidence 556666666555444321 12335567777776 5554432 23333333322 3588888875 7
Q ss_pred hhcCCCCh
Q psy5629 88 YHMGFTQD 95 (203)
Q Consensus 88 ~~l~F~ee 95 (203)
...||+++
T Consensus 146 ~~~G~s~~ 153 (188)
T 3c1l_A 146 RKAGFSDR 153 (188)
T ss_dssp HHTTCCHH
T ss_pred HHcCCCHH
Confidence 78899987
No 47
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=21.70 E-value=1.1e+02 Score=21.77 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=27.8
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhh
Q psy5629 43 LYKSVSKKLSLPSADNVQDSVEGLVYFLLLATI 75 (203)
Q Consensus 43 ~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK 75 (203)
..+.+|++.+++. .+++..|+++...+.++.+
T Consensus 6 Li~~ia~~~~lsk-~~~~~~l~~~~~~i~~~L~ 37 (99)
T 3c4i_A 6 LIDVLTQKLGSDR-RQATAAVENVVDTIVRAVH 37 (99)
T ss_dssp HHHHHHHHHTCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHh
Confidence 4567889999999 9999999999999988765
No 48
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=21.50 E-value=1.2e+02 Score=24.75 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHH
Q psy5629 23 VIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSV 63 (203)
Q Consensus 23 vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~V 63 (203)
.+.|++.-+.+|...|-++. -+|++|||+. .+|.+.+
T Consensus 9 sl~eiG~ria~~y~~g~tQ~---eIA~~lGiSr-~~VSR~L 45 (192)
T 1zx4_A 9 SIREIGLRLMRMKNDGMSQK---DIAAKEGLSQ-AKVTRAL 45 (192)
T ss_dssp CHHHHHHHHHHHHHTTCCHH---HHHHHHTCCH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCHH---HHHHHhCcCH-HHHHHHH
Confidence 36788888888888887776 9999999999 9998864
No 49
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=20.84 E-value=1.1e+02 Score=21.67 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=27.6
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhh
Q psy5629 43 LYKSVSKKLSLPSADNVQDSVEGLVYFLLLATI 75 (203)
Q Consensus 43 ~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK 75 (203)
..+.+|++.+++. .++...|+++...+.++.+
T Consensus 6 Li~~ia~~~~lsk-~~~~~~l~~~~~~i~~~L~ 37 (99)
T 1exe_A 6 LIKAIAQDTGLTQ-VSVSKMLASFEKIITETVA 37 (99)
T ss_dssp HHHHHHHHHCSCC-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 4667889999999 9999999999999888765
No 50
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=20.65 E-value=1.4e+02 Score=20.23 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=31.7
Q ss_pred cccCCChHHHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy5629 15 VLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFL 70 (203)
Q Consensus 15 fL~~~~~~vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll 70 (203)
.|..+++. -.+... ..|.-.|.....|.-+|+.+|++. .+|.+-+.-...-|
T Consensus 15 ~l~~L~~~-er~vl~--l~~~l~~~~~~s~~EIA~~lgis~-~tV~~~~~ra~~kL 66 (87)
T 1tty_A 15 VLKTLSPR-EAMVLR--MRYGLLDGKPKTLEEVGQYFNVTR-ERIRQIEVKALRKL 66 (87)
T ss_dssp HHTTSCHH-HHHHHH--HHHTTTTSSCCCHHHHHHHHTCCH-HHHHHHHHHHHHHH
T ss_pred HHHhCCHH-HHHHHH--HHHccCCCCCCCHHHHHHHHCCCH-HHHHHHHHHHHHHH
Confidence 45556555 233322 233333445677889999999999 88877655444433
No 51
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=20.46 E-value=77 Score=21.85 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=38.9
Q ss_pred cCCChHHHHHHHHHHHHHHhcC-CchhhHHHHHhhcCCCchHHHHHHHHH
Q psy5629 17 FQLPPEVIQDFCTLTTNYLKDG-PNQKLYKSVSKKLSLPSADNVQDSVEG 65 (203)
Q Consensus 17 ~~~~~~vv~efckiAiefl~~G-~n~K~y~~aA~KL~v~~~~~Vq~~Ve~ 65 (203)
+++++.|+..+..++.+|...= ..-..|..-|.+=.|+. |+|+=|+..
T Consensus 17 ~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~-eDVkLAi~~ 65 (68)
T 1taf_A 17 QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDL-DDVRLATEV 65 (68)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCH-HHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHh
Confidence 5788899999999999988765 44567888888888998 999888764
No 52
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=20.14 E-value=3e+02 Score=21.08 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCchh-hHHHHHhhcCCCchHHHHH---------------HHHHHHHHHHHHhhccCChhhhhhhh
Q psy5629 24 IQDFCTLTTNYLKDGPNQK-LYKSVSKKLSLPSADNVQD---------------SVEGLVYFLLLATILNISEYDFCNTL 87 (203)
Q Consensus 24 v~efckiAiefl~~G~n~K-~y~~aA~KL~v~~~~~Vq~---------------~Ve~L~~Ll~essK~~ise~dF~dsl 87 (203)
..|+..+++..++.-.--- .....|++.|++. +.+.. ++-.++.-++... -.+++.+|.. +
T Consensus 72 ~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~-~~i~~l~~~~~~~~~~~~e~a~l~~a~~lt~~~-~~v~d~~~~~-l 148 (191)
T 2pfx_A 72 EREMIAVVVSSINKCFYCLVAHGAAVRQLSGDP-QLGEMLVMNYRVAPLDARQRVMLDFAAKMTRAS-AEIEEADREV-L 148 (191)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCH-HHHHHHHHCGGGSCCCHHHHHHHHHHHHHHHHG-GGCCHHHHHH-H
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCH-HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCc-CCCCHHHHHH-H
Confidence 5556666555554443211 2234566777766 55543 3333334444332 2588888875 7
Q ss_pred hhcCCCCh
Q psy5629 88 YHMGFTQD 95 (203)
Q Consensus 88 ~~l~F~ee 95 (203)
...||+++
T Consensus 149 ~~~G~s~~ 156 (191)
T 2pfx_A 149 RSHGFNDR 156 (191)
T ss_dssp HHTTCCHH
T ss_pred HHcCCCHH
Confidence 88899987
Done!