RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5629
(203 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 3e-04
Identities = 45/248 (18%), Positives = 82/248 (33%), Gaps = 70/248 (28%)
Query: 8 SHREHLSVL--------FQLPPEVIQDF---CTLTTNYLKDGPNQ-KLYKSV-SKKLS-- 52
+ E S+L LP EV+ ++ ++DG +K V KL+
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 53 LPSADNVQDSVEGLVYFLLLA-------------TIL--NISEYD---FCNTLYHMGFTQ 94
+ S+ NV + E F L+ +++ ++ + D N L+ +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 95 DDKCEKI--LYEFY------TQEKYNLYRTLISEYISVVATRSHLNQCEPKFT------- 139
E + Y + +Y L+R+++ Y + + P +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSH 476
Query: 140 IRLHLENPDEQEKQIDLEM---DVR-----------------SVLNITQILEEALSHAKL 179
I HL+N + E+ M D R S+LN Q L+ +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 180 NQRKMSRR 187
N K R
Sbjct: 537 NDPKYERL 544
Score = 37.1 bits (85), Expect = 0.003
Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 30/170 (17%)
Query: 1 MIINLNESHREHLSVLFQLPPEVIQDF-CTLTTNYLKDGPNQKLYKSVSKK-LSLPSADN 58
M E ++ +L + +F C ++D P L K + A +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDC----KDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 59 --------VQDSVEGLVY-FLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQE 109
+ E +V F + +L I Y F + + + ++ Y ++
Sbjct: 63 GTLRLFWTLLSKQEEMVQKF--VEEVLRI-NYKFLMSPIK----TEQRQPSMMTRMYIEQ 115
Query: 110 KYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLE-M 158
+ LY + V + ++++ +P +R L K + ++ +
Sbjct: 116 RDRLYND------NQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGV 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 74/184 (40%)
Query: 5 LNESHREHL------SVLFQLPPE----------VIQDF---CTLTTNYLKDGPNQKLYK 45
L E +L ++ +L E +I+++ + N L++
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 46 SVSKKLSLPSADNVQDSVEGLVYFLLLATIL----NISEYDFCNTLYHMGFTQDDKCEKI 101
+V N Q L I N +Y F
Sbjct: 148 AVG-------EGNAQ-----------LVAIFGGQGNTDDY----------FE-------- 171
Query: 102 LYEFYTQEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVR 161
E ++ Y Y L+ + I A L++ + + EK +++
Sbjct: 172 --EL--RDLYQTYHVLVGDLIKFSA--ETLSEL---------IRTTLDAEKVFTQGLNIL 216
Query: 162 SVLN 165
L
Sbjct: 217 EWLE 220
Score = 29.2 bits (65), Expect = 0.95
Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 70/244 (28%)
Query: 1 MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLK--DGPNQK---LYKSVSKKLSLPS 55
++ +L + E LS L + + + T N L+ + P+ Y +S +S P
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDA-EKVFTQGLNILEWLENPSNTPDKDY-LLSIPISCPL 240
Query: 56 ADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILY------------ 103
+Q L ++++ A +L + + + L G T + L
Sbjct: 241 IGVIQ-----LAHYVVTAKLLGFTPGELRSYLK--GAT---GHSQGLVTAVAIAETDSWE 290
Query: 104 EFYTQEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLH-----LEN------------ 146
F+ ++ + + + + R + + P ++ LEN
Sbjct: 291 SFFV----SVRKAI--TVLFFIGVRCY--EAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 147 --PDEQ-EKQIDL---EMDVRSVLNITQI----------LEEALSHAKLNQRKMSRRKQL 190
EQ + ++ + + I+ + ++L L RK L
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 191 SQTK 194
Q++
Sbjct: 403 DQSR 406
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 28.8 bits (65), Expect = 1.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 39 PNQKLYKSVSKKLSLP----SADNV-QDSVEG 65
PN ++ + V K + ADNV + V+G
Sbjct: 165 PNDRILEIVDKNTPMLEAFREADNVLRQGVQG 196
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 39 PNQKLYKSVSKKLSLP----SADNV-QDSVEG 65
PN +L + +SL SAD V + V+G
Sbjct: 165 PNDRLLQMGDAAVSLMDAFRSADEVLLNGVQG 196
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell
cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Length = 338
Score = 28.3 bits (64), Expect = 1.9
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 39 PNQKLYKSVSKKLSLP----SADNV-QDSVEG 65
N K+ + ++ L++ D+V +V G
Sbjct: 161 HNDKIKELSNRTLTIKDAFKEVDSVLSKAVRG 192
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding,
cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A
{Staphylococcus aureus}
Length = 396
Score = 28.0 bits (63), Expect = 2.0
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 39 PNQKLYKSVSKKLSLP----SADNV-QDSVEG 65
PN +L V K + ADNV + V+G
Sbjct: 171 PNDRLLDIVDKSTPMMEAFKEADNVLRQGVQG 202
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 28.0 bits (63), Expect = 2.0
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 39 PNQKLYKSVSKKLSLP----SADNV-QDSVEG 65
N KL + + + + + AD V+G
Sbjct: 175 SNNKLMEELPRDVKIKDAFLKADETLHQGVKG 206
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 27.9 bits (63), Expect = 2.1
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 39 PNQKLYKSVSKKLSLP----SADNV-QDSVEG 65
PN+KL + K SL AD+V +V G
Sbjct: 165 PNEKLLTILGKDASLLAAFAKADDVLAGAVRG 196
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2,
nucleotidyltransferase, transcription, transferase; HET:
MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Length = 296
Score = 27.9 bits (63), Expect = 2.4
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 14/43 (32%)
Query: 71 LLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNL 113
L ATI+ L + +T + IL F+ + + +
Sbjct: 57 LPATII----------LRALNYTTEQ----ILDLFFEKVIFEI 85
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 28.0 bits (63), Expect = 2.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 39 PNQKLYKSVSKKLSLP----SADNV-QDSVEG 65
PN+KL + K SL AD+V +V G
Sbjct: 165 PNEKLLTILGKDASLLAAFAKADDVLAGAVRG 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.368
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,772,137
Number of extensions: 148258
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 16
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)