RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5629
         (203 letters)



>d1llaa3 b.1.18.3 (A:380-628) Arthropod hemocyanin, C-terminal
           domain {Horseshoe crab (Limulus polyphemus) [TaxId:
           6850]}
          Length = 249

 Score = 25.6 bits (56), Expect = 3.9
 Identities = 9/60 (15%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 95  DDKCEKILYEFYTQEKYNLYRTL-ISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQ 153
             + + +++ F  +++  L   +      S+ A   HL+     F+  ++++N    +K 
Sbjct: 20  HARVDNVVHTFMREQELELKHGINPGNARSIKARYYHLDHEP--FSYAVNVQNNSASDKH 77


>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia
          coli [TaxId: 562]}
          Length = 336

 Score = 25.7 bits (55), Expect = 5.0
 Identities = 9/39 (23%), Positives = 13/39 (33%)

Query: 14 SVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLS 52
            LFQL PE   +F       +   P + L +       
Sbjct: 8  KALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPAKP 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 679,951
Number of extensions: 29888
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 5
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)