Query psy5633
Match_columns 198
No_of_seqs 111 out of 354
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 22:38:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2592|consensus 100.0 1.3E-63 2.8E-68 447.9 16.5 176 6-198 4-180 (426)
2 PF03348 Serinc: Serine incorp 100.0 4E-61 8.7E-66 442.4 16.0 174 10-198 1-180 (429)
3 MTH00136 ND3 NADH dehydrogenas 53.9 32 0.0007 26.4 4.9 13 172-184 97-109 (116)
4 PF11241 DUF3043: Protein of u 50.6 40 0.00086 28.1 5.2 70 114-192 67-136 (170)
5 MTH00106 ND3 NADH dehydrogenas 48.7 43 0.00093 25.6 4.9 13 172-184 96-108 (115)
6 KOG4662|consensus 47.5 55 0.0012 25.8 5.3 21 162-185 96-116 (122)
7 PF14007 YtpI: YtpI-like prote 45.4 47 0.001 24.7 4.4 51 124-177 26-76 (89)
8 MTH00203 ND3 NADH dehydrogenas 42.3 52 0.0011 25.0 4.4 13 172-184 95-107 (112)
9 PTZ00359 hypothetical protein; 40.9 2.1E+02 0.0046 27.2 8.9 132 31-179 28-165 (443)
10 PRK06602 NADH:ubiquinone oxido 35.5 88 0.0019 24.1 4.8 13 172-184 103-115 (121)
11 MTH00042 ND3 NADH dehydrogenas 35.4 83 0.0018 24.1 4.6 13 172-184 97-109 (116)
12 PF14015 DUF4231: Protein of u 34.9 1.7E+02 0.0037 21.3 6.2 66 123-190 13-82 (112)
13 PF11893 DUF3413: Domain of un 34.7 1.2E+02 0.0027 26.3 6.1 49 121-169 13-65 (253)
14 PRK07756 NADH dehydrogenase su 34.4 1.1E+02 0.0024 23.6 5.3 13 172-184 104-116 (122)
15 PRK02935 hypothetical protein; 29.0 2.2E+02 0.0048 22.1 5.8 36 97-140 14-49 (110)
16 PF07187 DUF1405: Protein of u 28.7 3.3E+02 0.007 22.4 7.3 50 127-179 54-103 (163)
17 PF14037 YoqO: YoqO-like prote 28.7 1.5E+02 0.0033 23.2 5.0 43 127-184 5-47 (117)
18 CHL00022 ndhC NADH dehydrogena 28.3 1.1E+02 0.0024 23.6 4.3 14 172-185 102-115 (120)
19 COG2917 Intracellular septatio 27.6 3.7E+02 0.0081 22.6 9.3 52 94-176 117-170 (180)
20 PRK15487 O-antigen ligase RfaL 27.4 5E+02 0.011 24.0 10.6 90 91-186 31-122 (400)
21 KOG3488|consensus 26.9 1.4E+02 0.003 21.6 4.2 47 85-136 5-51 (81)
22 PRK10263 DNA translocase FtsK; 26.8 8.8E+02 0.019 26.7 13.5 16 94-109 75-90 (1355)
23 PF14163 SieB: Superinfection 26.8 2.3E+02 0.005 22.2 6.0 34 154-189 33-66 (151)
24 PF06123 CreD: Inner membrane 26.8 5.5E+02 0.012 24.3 9.8 47 35-109 298-344 (430)
25 MTH00069 ND3 NADH dehydrogenas 26.8 1E+02 0.0022 23.5 3.8 13 172-184 95-107 (114)
26 COG3083 Predicted hydrolase of 25.7 1.5E+02 0.0032 29.2 5.4 56 123-179 15-75 (600)
27 PRK06432 NADH dehydrogenase su 25.2 2.1E+02 0.0045 23.2 5.4 14 172-185 125-138 (144)
28 KOG2592|consensus 25.1 2.1E+02 0.0046 27.1 6.1 107 35-148 300-422 (426)
29 PF07884 VKOR: Vitamin K epoxi 25.0 99 0.0022 23.8 3.5 22 33-54 1-22 (137)
30 MTH00092 ND3 NADH dehydrogenas 24.7 1.3E+02 0.0029 22.8 4.1 11 174-184 94-104 (111)
31 MTH00202 ND3 NADH dehydrogenas 24.7 1.6E+02 0.0035 22.6 4.6 13 172-184 98-110 (117)
32 MTH00113 ND3 NADH dehydrogenas 23.8 1.5E+02 0.0032 22.5 4.2 12 173-184 97-108 (114)
33 TIGR03813 put_Glu_GABA_T putat 23.4 4.9E+02 0.011 24.0 8.3 41 128-168 402-445 (474)
34 PF07314 DUF1461: Protein of u 23.1 2.3E+02 0.005 23.2 5.5 65 116-182 85-150 (181)
35 PRK07928 NADH dehydrogenase su 23.1 2.4E+02 0.0052 21.7 5.3 14 172-185 101-114 (119)
36 COG1055 ArsB Na+/H+ antiporter 22.7 2.4E+02 0.0052 26.6 6.1 52 118-171 212-263 (424)
37 MTH00030 ND3 NADH dehydrogenas 21.9 1.6E+02 0.0036 23.0 4.2 13 172-184 105-117 (123)
38 PRK15238 inner membrane transp 21.8 4.2E+02 0.0092 24.7 7.7 20 163-187 475-494 (496)
39 PF03034 PSS: Phosphatidyl ser 21.4 93 0.002 27.9 3.0 33 92-125 4-36 (280)
40 PF01169 UPF0016: Uncharacteri 21.0 3.2E+02 0.0069 19.4 5.9 52 111-170 23-77 (78)
41 MTH00055 ND3 NADH dehydrogenas 20.5 2.1E+02 0.0045 21.9 4.4 13 172-184 100-112 (118)
42 PF11174 DUF2970: Protein of u 20.2 1.4E+02 0.0031 20.2 3.1 18 110-127 11-28 (56)
No 1
>KOG2592|consensus
Probab=100.00 E-value=1.3e-63 Score=447.86 Aligned_cols=176 Identities=53% Similarity=1.087 Sum_probs=169.2
Q ss_pred hhHHHHhhhhhcccCCccCCCCCcchHHHHHHHHHHHHHHHHHHHhcChhHHHhhccCC-CCCCCcccccccCcccCCCc
Q psy5633 6 AAQMACCCGSMACSLCSCCTNGKSSTLTRIMYAVMLLVGTIIACITLAPGLQDFLRKVP-FCSESQSIAQSMGVVGSIDC 84 (198)
Q Consensus 6 ~~~~~cc~g~a~c~~C~~c~~~~~s~~tR~~Y~~~fll~~i~s~i~l~~~~~~~l~~~~-~C~~~~~~~~~~~~~~~~~C 84 (198)
+++++||||+++|.+|+|||+.+||++||++|+++++++++++|+|+ |+++++++|.| .|++ .||
T Consensus 4 ~s~~~cc~g~~acl~cs~cps~~nst~tRl~ya~~l~l~~~vs~i~~-~~~~~~l~k~p~~c~~-------------~~c 69 (426)
T KOG2592|consen 4 ASSVACCCGGAACLLCSCCPSLTNSTVTRLIYAFILLLGTLVSWIML-PGAEKQLNKLPWFCEG-------------NDC 69 (426)
T ss_pred HHHHHHhhcchHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHhhCCccccC-------------CCc
Confidence 67899999999997799999999999999999999999999999999 99999999999 4753 278
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCcchhHHHHhchhHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHHH
Q psy5633 85 QAVVGYMAVYRICFGMGVFFLIMALMMIGVKSSRDNRAAIQNGMWGMKYVLVILIVIAAFFIPADSPFGTTMMYIGMVGG 164 (198)
Q Consensus 85 ~~~~G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~i~~FfIP~~~~f~~~~~~i~~vga 164 (198)
+.++||+||||+|||+++||++++++|+||||+||||++||||||++|+++|+++++++||||| +.|..+|+|+|++||
T Consensus 70 ~~~~gy~AVyR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~-~~~~~~~~~v~~~Ga 148 (426)
T KOG2592|consen 70 GKLLGYKAVYRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPN-GFFISFWFYVSVFGA 148 (426)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCC-ccchhHHHHHHHHhH
Confidence 8889999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q psy5633 165 FVFILIQLVLLVDFAHTWAEVWVSNYEETESRSW 198 (198)
Q Consensus 165 ~~FiliQlIlLvDFa~~wne~wv~~~e~~~~~~w 198 (198)
++|||+||||||||||+|||+|++|+| |||.|
T Consensus 149 ~~FILvqLvLLvDFaH~w~e~wv~~~E--dsr~w 180 (426)
T KOG2592|consen 149 ALFILVQLVLLVDFAHSWNESWVEKVE--DSRFW 180 (426)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhh--chhHH
Confidence 999999999999999999999999999 88876
No 2
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=100.00 E-value=4e-61 Score=442.43 Aligned_cols=174 Identities=59% Similarity=1.154 Sum_probs=165.4
Q ss_pred HHhhhhhcccC-CccCCCC-CcchHHHHHHHHHHHHHHHHHHHhcChhHHHhhcc-CC-CCCCCcccccccCcccCCCc-
Q psy5633 10 ACCCGSMACSL-CSCCTNG-KSSTLTRIMYAVMLLVGTIIACITLAPGLQDFLRK-VP-FCSESQSIAQSMGVVGSIDC- 84 (198)
Q Consensus 10 ~cc~g~a~c~~-C~~c~~~-~~s~~tR~~Y~~~fll~~i~s~i~l~~~~~~~l~~-~~-~C~~~~~~~~~~~~~~~~~C- 84 (198)
|||||+++|++ |+|||++ ++|++||++|+++|+++++++|+|++|++++.++| +| +|+. +|
T Consensus 1 acCcgsaaCs~~c~~c~~~~~~s~~tR~~Ya~~~l~~~i~a~i~~~~~~~~~l~~~~~~~~~~--------------~C~ 66 (429)
T PF03348_consen 1 ACCCGSAACSLCCSCCPSCFKSSTSTRIMYALIFLLGTILAWIMLSPGVESKLKKKIPWFCGF--------------DCP 66 (429)
T ss_pred CCchhHhHHHHHHhccCCcCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCC--------------Ccc
Confidence 69999999987 7899997 99999999999999999999999999999988886 78 6732 46
Q ss_pred -hhhhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCcchhHHHHhchhHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHH
Q psy5633 85 -QAVVGYMAVYRICFGMGVFFLIMALMMIGVKSSRDNRAAIQNGMWGMKYVLVILIVIAAFFIPADSPFGTTMMYIGMVG 163 (198)
Q Consensus 85 -~~~~G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~i~~FfIP~~~~f~~~~~~i~~vg 163 (198)
++++|++||||+|||+++||++|+++|+|||+++|+|++||||||++|+++|+++++++||||| +.|+++|+|+|++|
T Consensus 67 ~~~c~G~~aVyRvsfal~~Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~-~~f~~~~~~v~~~g 145 (429)
T PF03348_consen 67 SDSCVGYSAVYRVSFALALFFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPN-GSFINVYMYVARVG 145 (429)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCc-hHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q psy5633 164 GFVFILIQLVLLVDFAHTWAEVWVSNYEETESRSW 198 (198)
Q Consensus 164 a~~FiliQlIlLvDFa~~wne~wv~~~e~~~~~~w 198 (198)
|++||+||+|+||||||+|||+|++|+||+++|+|
T Consensus 146 a~~FiliQlIlLvDFah~wne~w~~~~e~~~s~~w 180 (429)
T PF03348_consen 146 AFIFILIQLILLVDFAHSWNESWVEKAEEGNSKRW 180 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCcee
Confidence 99999999999999999999999999999998887
No 3
>MTH00136 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=53.88 E-value=32 Score=26.39 Aligned_cols=13 Identities=15% Similarity=0.585 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAE 184 (198)
Q Consensus 172 lIlLvDFa~~wne 184 (198)
+++++-+.|+|++
T Consensus 97 ~iL~~gl~yew~~ 109 (116)
T MTH00136 97 ILLTLGLIYEWLQ 109 (116)
T ss_pred HHHHHHHHHHHHc
Confidence 7889999999976
No 4
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=50.59 E-value=40 Score=28.05 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=38.9
Q ss_pred cCCCcchhHHHHhchhHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy5633 114 VKSSRDNRAAIQNGMWGMKYVLVILIVIAAFFIPADSPFGTTMMYIGMVGGFVFILIQLVLLVDFAHTWAEVWVSNYEE 192 (198)
Q Consensus 114 v~ss~d~Ra~ihnG~W~~K~l~~~~l~i~~FfIP~~~~f~~~~~~i~~vga~~FiliQlIlLvDFa~~wne~wv~~~e~ 192 (198)
+++--|.|-.+-+=|.++-++++++.++ .|+ .-.+.+.-+++.+-++.++|..++| .+..+..-.+|.-+
T Consensus 67 vRD~VDsR~~i~e~fmP~alv~lv~~~v----~~~--~~~~~~~~~~~~~~~~~~iid~~~l---~r~vkk~v~~kFp~ 136 (170)
T PF11241_consen 67 VRDYVDSRRNIGEFFMPVALVLLVLSFV----VPS--PQVQLYVTLAMYVLLLLVIIDGVIL---GRRVKKRVAEKFPD 136 (170)
T ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHH----ccc--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCC
Confidence 3444466655655566555555554444 566 4456665556555555555555554 44556666666654
No 5
>MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=48.72 E-value=43 Score=25.59 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAE 184 (198)
Q Consensus 172 lIlLvDFa~~wne 184 (198)
.++++-+.|+|++
T Consensus 96 ~iL~~gl~yew~~ 108 (115)
T MTH00106 96 SLLALSLAYEWTQ 108 (115)
T ss_pred HHHHHHHHHHHHc
Confidence 5788999999976
No 6
>KOG4662|consensus
Probab=47.53 E-value=55 Score=25.82 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5633 162 VGGFVFILIQLVLLVDFAHTWAEV 185 (198)
Q Consensus 162 vga~~FiliQlIlLvDFa~~wne~ 185 (198)
+-+++||+ ++.+.+.|+|+|.
T Consensus 96 ~~~fifIl---il~~Gl~~ew~~g 116 (122)
T KOG4662|consen 96 IMAFIFIL---ILKIGLYYEWSEG 116 (122)
T ss_pred HHHHHHHH---HHHHHHHHHHHhc
Confidence 45567765 5778999999874
No 7
>PF14007 YtpI: YtpI-like protein
Probab=45.39 E-value=47 Score=24.71 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=37.1
Q ss_pred HHhchhHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5633 124 IQNGMWGMKYVLVILIVIAAFFIPADSPFGTTMMYIGMVGGFVFILIQLVLLVD 177 (198)
Q Consensus 124 ihnG~W~~K~l~~~~l~i~~FfIP~~~~f~~~~~~i~~vga~~FiliQlIlLvD 177 (198)
+..+|.--|--+..|+++..|=+-- .+ ..-..+..+-+.+|+++.+.-++-
T Consensus 26 ~~k~~~~aka~ialG~fl~~fgiNQ--~~-~~~st~~~iV~~ifl~lG~~n~~~ 76 (89)
T PF14007_consen 26 MEKKWYSAKANIALGIFLILFGINQ--MF-LFGSTVRLIVGAIFLVLGLFNLFA 76 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HH-HcccHHHHHHHHHHHHHhHHHHHH
Confidence 5557777898888888888775543 33 244667788889999999877654
No 8
>MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=42.31 E-value=52 Score=25.01 Aligned_cols=13 Identities=15% Similarity=0.585 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAE 184 (198)
Q Consensus 172 lIlLvDFa~~wne 184 (198)
+++++-+.|+|.+
T Consensus 95 ~iL~~gl~yew~~ 107 (112)
T MTH00203 95 ILLTLGLIYEWLQ 107 (112)
T ss_pred HHHHHHHHHHHHc
Confidence 5788999999976
No 9
>PTZ00359 hypothetical protein; Provisional
Probab=40.93 E-value=2.1e+02 Score=27.18 Aligned_cols=132 Identities=14% Similarity=0.261 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcChhHHHhhccCCCCCCCcccccccCcccCCCchhhhhhhhhhhhhHHHHHHHHHHHHH
Q psy5633 31 TLTRIMYAVMLLVGTIIACITLAPGLQDFLRKVPFCSESQSIAQSMGVVGSIDCQAVVGYMAVYRICFGMGVFFLIMALM 110 (198)
Q Consensus 31 ~~tR~~Y~~~fll~~i~s~i~l~~~~~~~l~~~~~C~~~~~~~~~~~~~~~~~C~~~~G~~aVyRvsfal~~Ff~l~~l~ 110 (198)
+.+++++.+...++...+.-|+-+.+-+.+++...=++. ....+.+|. -.||...+.|.++=++
T Consensus 28 p~~~~lFivvaiLG~g~c~ALllnavv~~~~~~~l~~~~-------~~dkn~~~t---------~LS~~Ill~yi~LH~l 91 (443)
T PTZ00359 28 PIAKLLFILVAILGFGFCMAMLLNATVEAIEIKALQTEE-------FKLKNADMT---------ALSIAICLSHLALHFL 91 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-------cccCCCCcc---------hHHHHHHHHHHHHHHh
Confidence 567788888888888877777765544333310000110 001123442 2889988999888777
Q ss_pred HhhcCCCcchhHHHHhchhHHHHHHHHHHHHhhee--cCCCCcc--hh--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5633 111 MIGVKSSRDNRAAIQNGMWGMKYVLVILIVIAAFF--IPADSPF--GT--TMMYIGMVGGFVFILIQLVLLVDFA 179 (198)
Q Consensus 111 ~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~i~~Ff--IP~~~~f--~~--~~~~i~~vga~~FiliQlIlLvDFa 179 (198)
=...+--+.|-.++|.|+-..-+++++...++.|- ||+ +.. .+ .....--.++..|-.+|++-++-|.
T Consensus 92 GYyC~yvktpls~~~~~lii~GflvV~~Af~aV~~v~~p~-~g~~~~~~~~~~~~r~Y~a~afT~lQllAmvGFI 165 (443)
T PTZ00359 92 GYKCRFMKLHWTSWDSGLFILGFVVVISAFFAVFIVVMPD-EGIKLGGDDTYAGHRVYGAMGFTGLELLAMFGFI 165 (443)
T ss_pred ccccceeecchhHHHHHHHHhhhHHHHHHhhhhheEeecc-ccccccccccccceeeeeehHHHHHHHHHHHHHH
Confidence 77777778888999999998888888877777776 577 222 00 0112222344566677777777664
No 10
>PRK06602 NADH:ubiquinone oxidoreductase subunit A; Validated
Probab=35.54 E-value=88 Score=24.10 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAE 184 (198)
Q Consensus 172 lIlLvDFa~~wne 184 (198)
+++++-+.|+|++
T Consensus 103 ~iL~~gl~yew~~ 115 (121)
T PRK06602 103 LVLLVGLVYLWRK 115 (121)
T ss_pred HHHHHHHHHHHHc
Confidence 5788999999976
No 11
>MTH00042 ND3 NADH dehydrogenase subunit 3; Validated
Probab=35.35 E-value=83 Score=24.08 Aligned_cols=13 Identities=15% Similarity=0.687 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAE 184 (198)
Q Consensus 172 lIlLvDFa~~wne 184 (198)
.++++-+.|+|++
T Consensus 97 ~iL~~gl~yew~~ 109 (116)
T MTH00042 97 IILTIGLVYEWVN 109 (116)
T ss_pred HHHHHHHHHHHHc
Confidence 5788999999975
No 12
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=34.90 E-value=1.7e+02 Score=21.26 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=37.4
Q ss_pred HHHhchhHHHHHHHHHHHHhhe----ecCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5633 123 AIQNGMWGMKYVLVILIVIAAF----FIPADSPFGTTMMYIGMVGGFVFILIQLVLLVDFAHTWAEVWVSNY 190 (198)
Q Consensus 123 ~ihnG~W~~K~l~~~~l~i~~F----fIP~~~~f~~~~~~i~~vga~~FiliQlIlLvDFa~~wne~wv~~~ 190 (198)
.-|+.+..++.+.+++.+.++. .... .......+.+.+.+.+-.++=++..++-...++|+|.+.-
T Consensus 13 ~~q~~~~~~~~~~i~~~~~~a~i~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~W~~~r 82 (112)
T PF14015_consen 13 RAQRRYRRLRIASIILSVLGAVIPVLASLS--GLGGGSSWLKLVAAILSALAAILASLAAFFRFHERWIRYR 82 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccchhhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 3566677778777775444221 1111 1111223444444455556666667777889999998754
No 13
>PF11893 DUF3413: Domain of unknown function (DUF3413); InterPro: IPR024588 This entry represents an uncharacterised domain found in the N-terminal of predicted HI0842 type membrane sulphatases.
Probab=34.70 E-value=1.2e+02 Score=26.35 Aligned_cols=49 Identities=16% Similarity=0.441 Sum_probs=32.7
Q ss_pred hHHHHhchhHHHHHHHHHHHHhheecCC---C-CcchhHHHHHHHHHHHHHHH
Q psy5633 121 RAAIQNGMWGMKYVLVILIVIAAFFIPA---D-SPFGTTMMYIGMVGGFVFIL 169 (198)
Q Consensus 121 Ra~ihnG~W~~K~l~~~~l~i~~FfIP~---~-~~f~~~~~~i~~vga~~Fil 169 (198)
+..++-|.|+.=+-.++++.++.-|++. . +.....|..++.+|=+-|+.
T Consensus 13 ~~~i~wg~wF~~~N~lla~li~~~Y~~~~~~p~t~lg~~Yl~~s~~gh~~fl~ 65 (253)
T PF11893_consen 13 SQLISWGHWFAFFNILLALLIGSRYLFSSDWPETLLGWLYLFVSWLGHFSFLA 65 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999965522 1 22355665555555544443
No 14
>PRK07756 NADH dehydrogenase subunit A; Validated
Probab=34.41 E-value=1.1e+02 Score=23.58 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAE 184 (198)
Q Consensus 172 lIlLvDFa~~wne 184 (198)
.++++-+.|+|++
T Consensus 104 ~iL~~gl~yew~~ 116 (122)
T PRK07756 104 VMLLVGLAYAWKK 116 (122)
T ss_pred HHHHHHHHHHHHc
Confidence 5788999999976
No 15
>PRK02935 hypothetical protein; Provisional
Probab=28.99 E-value=2.2e+02 Score=22.07 Aligned_cols=36 Identities=14% Similarity=0.408 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcchhHHHHhchhHHHHHHHHHHH
Q psy5633 97 CFGMGVFFLIMALMMIGVKSSRDNRAAIQNGMWGMKYVLVILIV 140 (198)
Q Consensus 97 sfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~ 140 (198)
.||+.+-|.-+.++-+|+ .++++.|..-+..++|+.
T Consensus 14 t~aL~lvfiG~~vMy~Gi--------ff~~~~~~m~ifm~~G~l 49 (110)
T PRK02935 14 TFALSLVFIGFIVMYLGI--------FFRESIIIMTIFMLLGFL 49 (110)
T ss_pred HHHHHHHHHHHHHHHHHH--------HhcccHHHHHHHHHHHHH
Confidence 466666666666666663 345555555555554443
No 16
>PF07187 DUF1405: Protein of unknown function (DUF1405); InterPro: IPR009845 This family consists of several bacterial and related archaeal protein of around 180 residues in length. The function of this family is unknown.
Probab=28.70 E-value=3.3e+02 Score=22.41 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5633 127 GMWGMKYVLVILIVIAAFFIPADSPFGTTMMYIGMVGGFVFILIQLVLLVDFA 179 (198)
Q Consensus 127 G~W~~K~l~~~~l~i~~FfIP~~~~f~~~~~~i~~vga~~FiliQlIlLvDFa 179 (198)
-.+.+|.-+|...+...++..+ +. ..+++..++.|=+-+.+|-+++.-+.
T Consensus 54 fv~liKYGlWav~~~~~~~~~~-~~--~~~~~~~L~~SH~~Mavea~l~~~~~ 103 (163)
T PF07187_consen 54 FVTLIKYGLWAVVMNLLFFDQG-GD--ITWMYWMLILSHLGMAVEALLFAPYY 103 (163)
T ss_pred HHHHHHHhHHHHHHHHHHHHhc-CC--ccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4889999999999999888765 22 46788888889899999999887654
No 17
>PF14037 YoqO: YoqO-like protein
Probab=28.69 E-value=1.5e+02 Score=23.24 Aligned_cols=43 Identities=40% Similarity=0.764 Sum_probs=27.6
Q ss_pred chhHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5633 127 GMWGMKYVLVILIVIAAFFIPADSPFGTTMMYIGMVGGFVFILIQLVLLVDFAHTWAE 184 (198)
Q Consensus 127 G~W~~K~l~~~~l~i~~FfIP~~~~f~~~~~~i~~vga~~FiliQlIlLvDFa~~wne 184 (198)
|||++=.-+.+.+... .|..| ++-..++.+++++|+++ |+|+|
T Consensus 5 GfyG~l~c~~isiil~-~f~~~-----e~i~~I~~~~~fVFill---------Y~wd~ 47 (117)
T PF14037_consen 5 GFYGFLICLIISIILK-SFSKS-----EWISHIACVGGFVFILL---------YNWDE 47 (117)
T ss_pred eeeHHHHHHHHHHHHH-hccch-----hhHHHHHHHHHHHHHHh---------hhhHH
Confidence 6777655555555444 44555 23334889999999886 78865
No 18
>CHL00022 ndhC NADH dehydrogenase subunit 3
Probab=28.26 E-value=1.1e+02 Score=23.59 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAEV 185 (198)
Q Consensus 172 lIlLvDFa~~wne~ 185 (198)
+++++-+.|+|.+.
T Consensus 102 ~iL~~gl~yew~~G 115 (120)
T CHL00022 102 LILIVGLVYAWRKG 115 (120)
T ss_pred HHHHHHHHHHHHhC
Confidence 57889999999763
No 19
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=27.56 E-value=3.7e+02 Score=22.59 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCcchhHHHHhchhHHHHHHHHHHHHhheecCCCCcc--hhHHHHHHHHHHHHHHHHH
Q psy5633 94 YRICFGMGVFFLIMALMMIGVKSSRDNRAAIQNGMWGMKYVLVILIVIAAFFIPADSPF--GTTMMYIGMVGGFVFILIQ 171 (198)
Q Consensus 94 yRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~i~~FfIP~~~~f--~~~~~~i~~vga~~FiliQ 171 (198)
=|++++-++||++++++-.=| ....|+ +.. +.+++-.++- .+|+++|
T Consensus 117 ~~Ln~~W~~FFlf~ai~N~yV----------------------------~~~fs~-d~WV~FKvfG~~~lt--lvf~l~q 165 (180)
T COG2917 117 RKLNLRWALFFLFCAIANEYV----------------------------ARNFST-DTWVNFKVFGLTPLT--LIFTLIQ 165 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------------HHhCCC-CeEEEeehhhhhHHH--HHHHHHH
Confidence 478999999999998876544 223455 222 2344444443 8999999
Q ss_pred HHHHH
Q psy5633 172 LVLLV 176 (198)
Q Consensus 172 lIlLv 176 (198)
.+.+.
T Consensus 166 ~~~i~ 170 (180)
T COG2917 166 GPYIY 170 (180)
T ss_pred HHHHH
Confidence 99874
No 20
>PRK15487 O-antigen ligase RfaL; Provisional
Probab=27.45 E-value=5e+02 Score=24.00 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=41.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhcCCCcchhHHHHhchhHHHHHHHHHHHHhheecCCCCcchhHHHHH-HHHH-HHHHH
Q psy5633 91 MAVYRICFGMGVFFLIMALMMIGVKSSRDNRAAIQNGMWGMKYVLVILIVIAAFFIPADSPFGTTMMYI-GMVG-GFVFI 168 (198)
Q Consensus 91 ~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~i~~FfIP~~~~f~~~~~~i-~~vg-a~~Fi 168 (198)
.+..-+.+.+++...+..+ .++.+.......+.++....++.+.+.+...+-|| ... ....+. .... -.+|+
T Consensus 31 t~~k~~~~~l~~~~~L~~l----~~d~k~~~~~l~~~l~i~~lll~ll~l~S~l~s~d-~~~-al~~l~n~ll~g~llf~ 104 (400)
T PRK15487 31 TRYKHLIIILMTITAIYYL----SRDPKHFLSLFKNSLFYSVAVLSLALLYSILISPD-MKL-SFKEFNKTILEGFLLYT 104 (400)
T ss_pred hHHHHHHHHHHHHHHHHHH----HcCHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCc-hhH-HHHHHHHHHHHHHHHHH
Confidence 3344444554444433322 13233333456666655555555555555555555 222 222232 2222 24566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5633 169 LIQLVLLVDFAHTWAEVW 186 (198)
Q Consensus 169 liQlIlLvDFa~~wne~w 186 (198)
.+|.+++-+--.+.--+|
T Consensus 105 ~l~~ill~~~~r~~~~k~ 122 (400)
T PRK15487 105 LLIPVLLKDETKETVAKI 122 (400)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 666666655555444333
No 21
>KOG3488|consensus
Probab=26.92 E-value=1.4e+02 Score=21.62 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCcchhHHHHhchhHHHHHHH
Q psy5633 85 QAVVGYMAVYRICFGMGVFFLIMALMMIGVKSSRDNRAAIQNGMWGMKYVLV 136 (198)
Q Consensus 85 ~~~~G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W~~K~l~~ 136 (198)
|+.+|-..|| +|.+.+.+|-+.-+++=-+ |...-+|.-|-+..+.+.
T Consensus 5 d~~vgl~lv~-iSl~iFtYYT~WViilPFv----Ds~hiihKyFLpr~yAi~ 51 (81)
T KOG3488|consen 5 DQVVGLMLVY-ISLAIFTYYTIWVIILPFV----DSMHIIHKYFLPREYAIT 51 (81)
T ss_pred hhhhhHHHHH-HHHHHHHHHHHHHhhhccc----chhHHHHHHhcChhHHhh
Confidence 4458999998 9999999999888888666 445567765554444433
No 22
>PRK10263 DNA translocase FtsK; Provisional
Probab=26.85 E-value=8.8e+02 Score=26.67 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHHHHHH
Q psy5633 94 YRICFGMGVFFLIMAL 109 (198)
Q Consensus 94 yRvsfal~~Ff~l~~l 109 (198)
.+..||.+.|.+.+.+
T Consensus 75 L~~LFGl~AYLLP~LL 90 (1355)
T PRK10263 75 LFFIFGVMAYTIPVII 90 (1355)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3667777776654433
No 23
>PF14163 SieB: Superinfection exclusion protein B
Probab=26.85 E-value=2.3e+02 Score=22.21 Aligned_cols=34 Identities=6% Similarity=0.131 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5633 154 TTMMYIGMVGGFVFILIQLVLLVDFAHTWAEVWVSN 189 (198)
Q Consensus 154 ~~~~~i~~vga~~FiliQlIlLvDFa~~wne~wv~~ 189 (198)
..|.+++.+-|..|++.|.+..+ .+...+++-+|
T Consensus 33 ~~~i~~~fl~s~s~li~~~~~~~--~~~~~~~~~~k 66 (151)
T PF14163_consen 33 QPWIGLIFLFSVSYLIAQLLSFI--YKEAKDRYQRK 66 (151)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 35678888888999999887766 33434444444
No 24
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=26.82 E-value=5.5e+02 Score=24.32 Aligned_cols=47 Identities=17% Similarity=0.471 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHHhhccCCCCCCCcccccccCcccCCCchhhhhhhhhhhhhHHHHHHHHHHHH
Q psy5633 35 IMYAVMLLVGTIIACITLAPGLQDFLRKVPFCSESQSIAQSMGVVGSIDCQAVVGYMAVYRICFGMGVFFLIMAL 109 (198)
Q Consensus 35 ~~Y~~~fll~~i~s~i~l~~~~~~~l~~~~~C~~~~~~~~~~~~~~~~~C~~~~G~~aVyRvsfal~~Ff~l~~l 109 (198)
.-|+++|+.-+.++.++.. .++|.+ -+. +.|.. |.+|+++||+++.-
T Consensus 298 ~KYgiLFI~LTF~~fflfE-----~~~~~~--iHp------------------iQY~L---VGlAl~lFYlLLLS 344 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFE-----LLSKLR--IHP------------------IQYLL---VGLALVLFYLLLLS 344 (430)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHhcCc--ccH------------------HHHHH---HHHHHHHHHHHHHH
Confidence 4699999999999987753 344433 000 23332 67899999976643
No 25
>MTH00069 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=26.80 E-value=1e+02 Score=23.47 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAE 184 (198)
Q Consensus 172 lIlLvDFa~~wne 184 (198)
.++++-+.|+|++
T Consensus 95 ~iL~~gl~yew~~ 107 (114)
T MTH00069 95 ILLTLGLIYEWIQ 107 (114)
T ss_pred HHHHHHHHHHHHc
Confidence 5788999999976
No 26
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=25.74 E-value=1.5e+02 Score=29.17 Aligned_cols=56 Identities=29% Similarity=0.631 Sum_probs=46.5
Q ss_pred HHHhchhHHHHHHHHHHHHhheec-----CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5633 123 AIQNGMWGMKYVLVILIVIAAFFI-----PADSPFGTTMMYIGMVGGFVFILIQLVLLVDFA 179 (198)
Q Consensus 123 ~ihnG~W~~K~l~~~~l~i~~FfI-----P~~~~f~~~~~~i~~vga~~FiliQlIlLvDFa 179 (198)
.|-=|+|+.-+-++.++++|.=++ |+ ..+...|.+++.+|=+-|+++-+=|+|=|-
T Consensus 15 ~isWghwfa~fNi~~aivlG~rYl~~~dwp~-tl~g~lY~~~s~lGhFsflvFA~yLlvlfp 75 (600)
T COG3083 15 MISWGHWFAFFNILLAIVLGSRYLFIMDWPS-TLAGRLYLYVSILGHFSFLVFALYLLVLFP 75 (600)
T ss_pred HhhHHHHHHHHHHHHHHHhCCcceeeccCcH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477789999999999999998554 56 456889999999999999998888887653
No 27
>PRK06432 NADH dehydrogenase subunit A; Validated
Probab=25.15 E-value=2.1e+02 Score=23.23 Aligned_cols=14 Identities=7% Similarity=-0.090 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAEV 185 (198)
Q Consensus 172 lIlLvDFa~~wne~ 185 (198)
+++++-+.|+|++.
T Consensus 125 ~iL~lGLiYEWkkG 138 (144)
T PRK06432 125 AMPLFAVYYAFKMG 138 (144)
T ss_pred HHHHHHHHHHHHcC
Confidence 56889999999873
No 28
>KOG2592|consensus
Probab=25.14 E-value=2.1e+02 Score=27.11 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHHhhccCC-C--CCCCcccccccCcccCCCchhhhhhhhhhhhhHHHHHHHH----HH
Q psy5633 35 IMYAVMLLVGTIIACITLAPGLQDFLRKVP-F--CSESQSIAQSMGVVGSIDCQAVVGYMAVYRICFGMGVFFL----IM 107 (198)
Q Consensus 35 ~~Y~~~fll~~i~s~i~l~~~~~~~l~~~~-~--C~~~~~~~~~~~~~~~~~C~~~~G~~aVyRvsfal~~Ff~----l~ 107 (198)
-.+++++++..++-+-.|+.+ +.+++|.+ . ++. ..++.||. +.+++++= ....|--+|--++|++ +|
T Consensus 300 ~iiGli~~~lcilYsalR~~s-~~~l~k~~~~~~e~~--~l~~~dG~-~~~~d~Ek--~GV~YsYsfFHfvf~LASlyvm 373 (426)
T KOG2592|consen 300 NIIGLIFLLLCILYSALRASS-RTQLRKLTRSNEEEP--LLPDEDGG-GRANDNEK--DGVTYSYSFFHFVFVLASLYVM 373 (426)
T ss_pred chHHHHHHHHHHHHHHhhccc-ccccccccccccccc--CccCCCCC-cccccccC--CCeeEeeeHHHHHHHHHHHHHH
Confidence 378899999999998888755 55666665 2 110 01112222 23344321 2223444444444444 45
Q ss_pred HHHHhhcCCCcchhHHHHhchhH--HHHH-------HHHHHHHhheecCC
Q psy5633 108 ALMMIGVKSSRDNRAAIQNGMWG--MKYV-------LVILIVIAAFFIPA 148 (198)
Q Consensus 108 ~l~~igv~ss~d~Ra~ihnG~W~--~K~l-------~~~~l~i~~FfIP~ 148 (198)
+.+|--.+...|. ..+..+||. +|+. +.+=-.++++..||
T Consensus 374 mtLTnW~~~~~~~-~~v~~~w~~vWVKI~ssWic~~LY~WTlVAPli~p~ 422 (426)
T KOG2592|consen 374 MTLTNWYTPDEDI-WFVKSSWASVWVKIVSSWICSGLYLWTLVAPLILPD 422 (426)
T ss_pred HHhccccCCCCce-eEEeccchHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5555444444333 334445443 2332 22223567788888
No 29
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=25.01 E-value=99 Score=23.78 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCh
Q psy5633 33 TRIMYAVMLLVGTIIACITLAP 54 (198)
Q Consensus 33 tR~~Y~~~fll~~i~s~i~l~~ 54 (198)
+|+.+.++-+++.++|..+...
T Consensus 1 ~~~~~~~l~liGl~~s~~l~~~ 22 (137)
T PF07884_consen 1 QRILLLALSLIGLLVSIYLLYV 22 (137)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888889999998776643
No 30
>MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=24.70 E-value=1.3e+02 Score=22.80 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=9.7
Q ss_pred HHHHHHHHHHH
Q psy5633 174 LLVDFAHTWAE 184 (198)
Q Consensus 174 lLvDFa~~wne 184 (198)
+++-+.|+|++
T Consensus 94 L~~Gl~yew~~ 104 (111)
T MTH00092 94 IFFGFYMEWWY 104 (111)
T ss_pred HHHHHHHHHHc
Confidence 78999999987
No 31
>MTH00202 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=24.67 E-value=1.6e+02 Score=22.57 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAE 184 (198)
Q Consensus 172 lIlLvDFa~~wne 184 (198)
+++++-+.|+|.+
T Consensus 98 ~iL~~Gl~yew~~ 110 (117)
T MTH00202 98 LILIGGLIHEWKE 110 (117)
T ss_pred HHHHHHHHHHHHc
Confidence 5788999999976
No 32
>MTH00113 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=23.81 E-value=1.5e+02 Score=22.53 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q psy5633 173 VLLVDFAHTWAE 184 (198)
Q Consensus 173 IlLvDFa~~wne 184 (198)
++++-+.|+|++
T Consensus 97 iL~lgl~yew~~ 108 (114)
T MTH00113 97 LLTLGLIYEWLQ 108 (114)
T ss_pred HHHHHHHHHHhc
Confidence 588999999976
No 33
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=23.38 E-value=4.9e+02 Score=23.99 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHH--HHhheecCCCCcc-hhHHHHHHHHHHHHHH
Q psy5633 128 MWGMKYVLVILI--VIAAFFIPADSPF-GTTMMYIGMVGGFVFI 168 (198)
Q Consensus 128 ~W~~K~l~~~~l--~i~~FfIP~~~~f-~~~~~~i~~vga~~Fi 168 (198)
.|....+.++.. .+..+++|..... .+...|...+.++.-+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~ 445 (474)
T TIGR03813 402 MWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAAL 445 (474)
T ss_pred hhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHH
Confidence 355555444433 3334556652322 2333566555444333
No 34
>PF07314 DUF1461: Protein of unknown function (DUF1461); InterPro: IPR010178 This entry represents a family of highly hydrophobic, uncharacterised predicted integral membrane proteins found almost entirely in low-GC Gram-positive bacteria, although a member is also found in Aquifex aeolicus.
Probab=23.09 E-value=2.3e+02 Score=23.18 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=36.9
Q ss_pred CCcchhHHHHhchhHHHHHHHHHHHHhheec-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5633 116 SSRDNRAAIQNGMWGMKYVLVILIVIAAFFI-PADSPFGTTMMYIGMVGGFVFILIQLVLLVDFAHTW 182 (198)
Q Consensus 116 ss~d~Ra~ihnG~W~~K~l~~~~l~i~~FfI-P~~~~f~~~~~~i~~vga~~FiliQlIlLvDFa~~w 182 (198)
.-+|.|.-++.+.....+.+++.+....... -+ +.. .....-+..+..+.+++-.+.++||-..+
T Consensus 85 Hf~DVk~Lf~~~~~i~~i~~i~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~l~l~~~~~~~F~~~F 150 (181)
T PF07314_consen 85 HFADVKNLFLLAYIIRNICLIISIILFLYLLKKK-RRL-WRLKRSFIWLLLLPLVLGLLAALDFDKFF 150 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777778877776555554333332222 22 122 23334555666777777777788886544
No 35
>PRK07928 NADH dehydrogenase subunit A; Validated
Probab=23.05 E-value=2.4e+02 Score=21.70 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAEV 185 (198)
Q Consensus 172 lIlLvDFa~~wne~ 185 (198)
+++++-+.|+|++.
T Consensus 101 ~iL~~Gl~yew~~G 114 (119)
T PRK07928 101 LTVFVAYAYVWRRG 114 (119)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999763
No 36
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=22.73 E-value=2.4e+02 Score=26.61 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=34.1
Q ss_pred cchhHHHHhchhHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHHHHH
Q psy5633 118 RDNRAAIQNGMWGMKYVLVILIVIAAFFIPADSPFGTTMMYIGMVGGFVFILIQ 171 (198)
Q Consensus 118 ~d~Ra~ihnG~W~~K~l~~~~l~i~~FfIP~~~~f~~~~~~i~~vga~~FiliQ 171 (198)
+|+|.++++.-=+.|-....+++...|++-+ .+.--...++++|+.+.+++-
T Consensus 212 ~~~~~ai~~~~l~~~~~~vl~~vli~f~~~~--~~~i~~~~val~~a~ill~~~ 263 (424)
T COG1055 212 LDPREAIRDRALFKLSLVVLALVLIAFLLLP--FLGIPVSLVALVGAAILLLLA 263 (424)
T ss_pred cChhcccccHHHHHHHHHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHHHh
Confidence 3455566666556666666677777777654 455556778888888776653
No 37
>MTH00030 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=21.93 E-value=1.6e+02 Score=22.96 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAE 184 (198)
Q Consensus 172 lIlLvDFa~~wne 184 (198)
+++++-+.|+|.+
T Consensus 105 ~iL~~Gl~yEw~~ 117 (123)
T MTH00030 105 IVLAIGLAYEWIK 117 (123)
T ss_pred HHHHHHHHHHHHh
Confidence 5688899999976
No 38
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=21.83 E-value=4.2e+02 Score=24.65 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5633 163 GGFVFILIQLVLLVDFAHTWAEVWV 187 (198)
Q Consensus 163 ga~~FiliQlIlLvDFa~~wne~wv 187 (198)
|-.+|+++.. +.|+..|+|+
T Consensus 475 ~~~i~~~~~~-----~~~~~~~~~~ 494 (496)
T PRK15238 475 GPVFFSILAW-----IIYQNYEKKM 494 (496)
T ss_pred HHHHHHHHHH-----HHHHhhchhc
Confidence 3444444543 3455555554
No 39
>PF03034 PSS: Phosphatidyl serine synthase; InterPro: IPR004277 Phosphatidyl serine synthase is also known as serine exchange enzyme (2.7.8 from EC). This family represents eukaryotic PSS I and II, membrane bound proteins that catalyse the replacement of the head group of a phospholipid (phosphotidylcholine or phosphotidylethanolamine) by L-serine.; GO: 0006659 phosphatidylserine biosynthetic process
Probab=21.35 E-value=93 Score=27.87 Aligned_cols=33 Identities=27% Similarity=0.667 Sum_probs=24.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcCCCcchhHHHH
Q psy5633 92 AVYRICFGMGVFFLIMALMMIGVKSSRDNRAAIQ 125 (198)
Q Consensus 92 aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ih 125 (198)
|+.|+-+|+++.|++..+.+ -..+.+|.|..++
T Consensus 4 a~WR~v~g~~v~Y~~~L~fl-lfq~~~~~r~~l~ 36 (280)
T PF03034_consen 4 AFWRIVFGLSVLYLLFLVFL-LFQNRDDARQILK 36 (280)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHH
Confidence 78999999999997654443 4556677777553
No 40
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=20.95 E-value=3.2e+02 Score=19.41 Aligned_cols=52 Identities=17% Similarity=0.440 Sum_probs=33.4
Q ss_pred HhhcCCCcchhHHHHhchhHHHHHHHHHHHHhhee---cCCCCcchhHHHHHHHHHHHHHHHH
Q psy5633 111 MIGVKSSRDNRAAIQNGMWGMKYVLVILIVIAAFF---IPADSPFGTTMMYIGMVGGFVFILI 170 (198)
Q Consensus 111 ~igv~ss~d~Ra~ihnG~W~~K~l~~~~l~i~~Ff---IP~~~~f~~~~~~i~~vga~~Fili 170 (198)
.+..|.+++|+..+=-.....-..-.++..+|... +|. .++-.+++.+|+++
T Consensus 23 ~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~--------~~i~~~~~~lFl~f 77 (78)
T PF01169_consen 23 ALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPE--------RYIKWVAGALFLLF 77 (78)
T ss_pred HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHH
Confidence 34556556676665555666666666666666653 555 56777888888875
No 41
>MTH00055 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=20.48 E-value=2.1e+02 Score=21.95 Aligned_cols=13 Identities=15% Similarity=0.672 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q psy5633 172 LVLLVDFAHTWAE 184 (198)
Q Consensus 172 lIlLvDFa~~wne 184 (198)
+++++-+.|+|.+
T Consensus 100 ~iL~~gl~yew~~ 112 (118)
T MTH00055 100 IILTIGLIYEWVK 112 (118)
T ss_pred HHHHHHHHHHHHc
Confidence 4778999999976
No 42
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=20.18 E-value=1.4e+02 Score=20.19 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=14.0
Q ss_pred HHhhcCCCcchhHHHHhc
Q psy5633 110 MMIGVKSSRDNRAAIQNG 127 (198)
Q Consensus 110 ~~igv~ss~d~Ra~ihnG 127 (198)
.++|++|++|.+..++++
T Consensus 11 af~GVqs~~~~e~Df~~~ 28 (56)
T PF11174_consen 11 AFFGVQSSKNRERDFAQG 28 (56)
T ss_pred HHhCcCcchhHHHHHHcC
Confidence 357999999887777665
Done!