Query psy5633
Match_columns 198
No_of_seqs 111 out of 354
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:39:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rko_A NADH-quinone oxidoreduc 46.8 11 0.00038 29.3 2.5 17 171-187 107-123 (147)
2 2lx0_A Membrane fusion protein 27.5 20 0.00068 20.5 0.8 11 124-134 19-29 (32)
3 3ixz_A Potassium-transporting 17.1 1.9E+02 0.0066 28.5 6.0 25 124-148 960-984 (1034)
4 1v54_D Cytochrome C oxidase su 16.7 33 0.0011 26.7 0.3 10 90-99 56-65 (147)
5 1p1p_A AA-conotoxin PIVA; neur 14.5 47 0.0016 18.2 0.5 13 12-24 2-17 (26)
6 2y69_D Cytochrome C oxidase su 14.4 41 0.0014 26.8 0.3 10 90-99 78-87 (169)
7 1dl0_A J-atracotoxin-HV1C; neu 13.8 68 0.0023 18.9 1.1 11 16-26 8-19 (37)
8 3k3f_A UREA transporter; membr 13.7 3.6E+02 0.012 23.4 6.2 51 118-173 233-283 (340)
9 1pqr_A Alpha-A-conotoxin EIVA; 12.9 49 0.0017 18.8 0.2 12 12-23 2-16 (31)
10 2zxe_A Na, K-ATPase alpha subu 11.5 4.4E+02 0.015 25.9 6.8 34 155-190 992-1025(1028)
No 1
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=46.76 E-value=11 Score=29.34 Aligned_cols=17 Identities=18% Similarity=-0.011 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5633 171 QLVLLVDFAHTWAEVWV 187 (198)
Q Consensus 171 QlIlLvDFa~~wne~wv 187 (198)
=+|+++-+.|+|++.=+
T Consensus 107 l~iL~~Gl~yEW~~GaL 123 (147)
T 3rko_A 107 IFVLLAGLVYLVRIGAL 123 (147)
T ss_dssp HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 35688999999999633
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=27.50 E-value=20 Score=20.49 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=8.5
Q ss_pred HHhchhHHHHH
Q psy5633 124 IQNGMWGMKYV 134 (198)
Q Consensus 124 ihnG~W~~K~l 134 (198)
+.-|||.+|++
T Consensus 19 lafgfwlfkyl 29 (32)
T 2lx0_A 19 LAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45689999875
No 3
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=17.05 E-value=1.9e+02 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=15.9
Q ss_pred HHhchhHHHHHHHHHHHHhheecCC
Q psy5633 124 IQNGMWGMKYVLVILIVIAAFFIPA 148 (198)
Q Consensus 124 ihnG~W~~K~l~~~~l~i~~FfIP~ 148 (198)
+.|-++..-+++-+++.+...|+|.
T Consensus 960 ~~N~~l~~~~~~~~~l~~~~~~~p~ 984 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVCIGCFLCYCPG 984 (1034)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566666666666666666667773
No 4
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=16.66 E-value=33 Score=26.73 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=8.7
Q ss_pred hhhhhhhhHH
Q psy5633 90 YMAVYRICFG 99 (198)
Q Consensus 90 ~~aVyRvsfa 99 (198)
-.|.||+||+
T Consensus 56 KkAlYrisF~ 65 (147)
T 1v54_D 56 KVELYRLKFK 65 (147)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHhc
Confidence 5689999998
No 5
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=14.46 E-value=47 Score=18.20 Aligned_cols=13 Identities=69% Similarity=1.661 Sum_probs=7.2
Q ss_pred hhhh---hcccCCccC
Q psy5633 12 CCGS---MACSLCSCC 24 (198)
Q Consensus 12 c~g~---a~c~~C~~c 24 (198)
|||+ |+|.-|+|-
T Consensus 2 ccg~ypnaachpc~c~ 17 (26)
T 1p1p_A 2 CCGSYPNAACHPCSCK 17 (26)
T ss_dssp CSTTSCCSSCCTTTST
T ss_pred ccccCCCccccccccC
Confidence 6665 555556543
No 6
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=14.43 E-value=41 Score=26.82 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=8.7
Q ss_pred hhhhhhhhHH
Q psy5633 90 YMAVYRICFG 99 (198)
Q Consensus 90 ~~aVyRvsfa 99 (198)
-.|.||+||+
T Consensus 78 KKAlYriSF~ 87 (169)
T 2y69_D 78 KVELYRLKFK 87 (169)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHhc
Confidence 5689999998
No 7
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=13.84 E-value=68 Score=18.90 Aligned_cols=11 Identities=36% Similarity=1.374 Sum_probs=5.8
Q ss_pred hcccC-CccCCC
Q psy5633 16 MACSL-CSCCTN 26 (198)
Q Consensus 16 a~c~~-C~~c~~ 26 (198)
-+|.. |-|||.
T Consensus 8 rpcaaccpccpg 19 (37)
T 1dl0_A 8 RPCAACCPCCPG 19 (37)
T ss_dssp SBCCSSCCCCTT
T ss_pred CccccccCCCCC
Confidence 34555 347764
No 8
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=13.70 E-value=3.6e+02 Score=23.38 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=33.7
Q ss_pred cchhHHHHhchhHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHHHHHHH
Q psy5633 118 RDNRAAIQNGMWGMKYVLVILIVIAAFFIPADSPFGTTMMYIGMVGGFVFILIQLV 173 (198)
Q Consensus 118 ~d~Ra~ihnG~W~~K~l~~~~l~i~~FfIP~~~~f~~~~~~i~~vga~~FiliQlI 173 (198)
..+++.+++|.|..--.+....+.+.|+.|+ .- .+ ..+.+|+.+=.++|.-
T Consensus 233 g~~~~~i~~GL~GfN~vL~~iAlg~~f~~~~--~~--~~-l~a~~~~~ls~~l~~a 283 (340)
T 3k3f_A 233 HSPETPVRLGLYGFNSVLCGIAMGGIFFYLN--IR--TF-LYALGCMVLGAIATGA 283 (340)
T ss_dssp TCCHHHHHTTTTTHHHHHHHHHHTTTSBCCS--HH--HH-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhCchhhhHHHHHHHHHHHHHcccc--HH--HH-HHHHHHHHHHHHHHHH
Confidence 4678999999999998876665555777776 22 11 2345666555666643
No 9
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=12.86 E-value=49 Score=18.77 Aligned_cols=12 Identities=58% Similarity=1.777 Sum_probs=6.7
Q ss_pred hhhh---hcccCCcc
Q psy5633 12 CCGS---MACSLCSC 23 (198)
Q Consensus 12 c~g~---a~c~~C~~ 23 (198)
|||+ |+|.-|+|
T Consensus 2 ccg~ypnaachpc~c 16 (31)
T 1pqr_A 2 CCGPYPNAACHPCGC 16 (31)
T ss_dssp CCCSSSSSSCCTTCS
T ss_pred CcCCCCCcccccccc
Confidence 6665 45544544
No 10
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=11.51 E-value=4.4e+02 Score=25.89 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5633 155 TMMYIGMVGGFVFILIQLVLLVDFAHTWAEVWVSNY 190 (198)
Q Consensus 155 ~~~~i~~vga~~FiliQlIlLvDFa~~wne~wv~~~ 190 (198)
.|..+..++...+++.++.=++ .+.+...|+++.
T Consensus 992 ~w~~~~~~~~~~~~~~e~~k~~--~r~~~~~~~~~~ 1025 (1028)
T 2zxe_A 992 WWFCAFPYSLIIFLYDEMRRFI--IRRSPGGWVEQE 1025 (1028)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHH--HHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHccCcchhHhh
Confidence 4444444444444444433221 223334566654
Done!