Query psy5633
Match_columns 198
No_of_seqs 111 out of 354
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 22:39:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5633.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5633hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wpga4 f.33.1.1 (A:1-124,A:24 24.2 1.7E+02 0.012 23.6 11.6 38 111-148 390-430 (472)
2 d1dl0a_ g.3.6.2 (A:) J-atracot 15.1 28 0.0021 19.0 1.1 11 16-26 8-19 (37)
3 d1v54d_ f.23.1.1 (D:) Mitochon 14.5 16 0.0012 26.6 -0.2 24 89-129 52-75 (144)
4 d1nekc_ f.21.2.2 (C:) Succinat 14.1 1.1E+02 0.0081 20.6 4.6 54 90-144 26-83 (129)
5 d1dmca_ g.46.1.1 (A:) Metallot 13.4 33 0.0024 18.0 1.0 10 17-26 21-31 (31)
6 d1ji9a_ g.46.1.1 (A:) Metallot 12.7 31 0.0023 18.8 0.8 6 21-26 4-9 (37)
7 d1m0ja_ g.46.1.1 (A:) Metallot 12.6 33 0.0024 17.7 0.8 9 13-21 14-22 (28)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 12.1 1E+02 0.0073 16.9 2.9 19 159-177 6-24 (36)
9 d1dfsa_ g.46.1.1 (A:) Metallot 12.0 34 0.0025 18.0 0.8 6 21-26 4-9 (31)
10 d3dtua1 f.24.1.1 (A:14-551) Ba 8.1 2.3E+02 0.017 24.0 5.3 32 153-184 477-508 (538)
No 1
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=24.22 E-value=1.7e+02 Score=23.63 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=22.1
Q ss_pred HhhcCCCcch--hHH-HHhchhHHHHHHHHHHHHhheecCC
Q psy5633 111 MIGVKSSRDN--RAA-IQNGMWGMKYVLVILIVIAAFFIPA 148 (198)
Q Consensus 111 ~igv~ss~d~--Ra~-ihnG~W~~K~l~~~~l~i~~FfIP~ 148 (198)
.+..|+.+++ |.. ++|-+|..=+++.+++.+...++|.
T Consensus 390 ~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~ 430 (472)
T d1wpga4 390 ALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDP 430 (472)
T ss_dssp HHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455554443 433 4565665555556666667777886
No 2
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=15.14 E-value=28 Score=19.01 Aligned_cols=11 Identities=36% Similarity=1.374 Sum_probs=5.9
Q ss_pred hcccC-CccCCC
Q psy5633 16 MACSL-CSCCTN 26 (198)
Q Consensus 16 a~c~~-C~~c~~ 26 (198)
-+|.. |-|||.
T Consensus 8 rpcaaccpccpg 19 (37)
T d1dl0a_ 8 RPCAACCPCCPG 19 (37)
T ss_dssp SBCCSSCCCCTT
T ss_pred CccccccCCCCC
Confidence 34555 447774
No 3
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.51 E-value=16 Score=26.59 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=16.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhcCCCcchhHHHHhchh
Q psy5633 89 GYMAVYRICFGMGVFFLIMALMMIGVKSSRDNRAAIQNGMW 129 (198)
Q Consensus 89 G~~aVyRvsfal~~Ff~l~~l~~igv~ss~d~Ra~ihnG~W 129 (198)
--.|.||+||+- .-+|..-+.|-|
T Consensus 52 EKkalYrisF~~-----------------t~ae~~~p~gew 75 (144)
T d1v54d_ 52 EKVELYRLKFKE-----------------SFAEMNRSTNEW 75 (144)
T ss_dssp HHHHHHHHHCSS-----------------CHHHHTCCCSHH
T ss_pred HHHHHHHHHhcc-----------------ccccccCCCCch
Confidence 356899999953 245665567777
No 4
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=14.15 E-value=1.1e+02 Score=20.56 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=26.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHH--HhhcCCCcchhHHHHh--chhHHHHHHHHHHHHhhe
Q psy5633 90 YMAVYRICFGMGVFFLIMALM--MIGVKSSRDNRAAIQN--GMWGMKYVLVILIVIAAF 144 (198)
Q Consensus 90 ~~aVyRvsfal~~Ff~l~~l~--~igv~ss~d~Ra~ihn--G~W~~K~l~~~~l~i~~F 144 (198)
.+..+|++ |.++|+.+..+. ......+.|.=...++ +-|..|++.+.......+
T Consensus 26 ~SI~HRis-Gv~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 83 (129)
T d1nekc_ 26 ASILHRVS-GVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAY 83 (129)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689998 444454433322 2222222232222222 346778877666655443
No 5
>d1dmca_ g.46.1.1 (A:) Metallothionein {Crab (Callinectes sapidus), alpha and beta domains [TaxId: 6763]}
Probab=13.35 E-value=33 Score=18.04 Aligned_cols=10 Identities=50% Similarity=1.633 Sum_probs=5.8
Q ss_pred cccC-CccCCC
Q psy5633 17 ACSL-CSCCTN 26 (198)
Q Consensus 17 ~c~~-C~~c~~ 26 (198)
.|.- |+|||.
T Consensus 21 tctkpcsccpk 31 (31)
T d1dmca_ 21 TCTKPCSCCPK 31 (31)
T ss_dssp HCSSCCSSSCC
T ss_pred hcCCCcccCCC
Confidence 3444 778873
No 6
>d1ji9a_ g.46.1.1 (A:) Metallothionein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.72 E-value=31 Score=18.84 Aligned_cols=6 Identities=67% Similarity=2.023 Sum_probs=3.2
Q ss_pred CccCCC
Q psy5633 21 CSCCTN 26 (198)
Q Consensus 21 C~~c~~ 26 (198)
|+|||.
T Consensus 4 csccpa 9 (37)
T d1ji9a_ 4 CSCCPA 9 (37)
T ss_dssp CSSSCT
T ss_pred cccchh
Confidence 555554
No 7
>d1m0ja_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=12.62 E-value=33 Score=17.66 Aligned_cols=9 Identities=44% Similarity=1.036 Sum_probs=3.9
Q ss_pred hhhhcccCC
Q psy5633 13 CGSMACSLC 21 (198)
Q Consensus 13 ~g~a~c~~C 21 (198)
.|+..|.-|
T Consensus 14 ggsctctnc 22 (28)
T d1m0ja_ 14 GGSCTCTNC 22 (28)
T ss_dssp SSSCCSSSC
T ss_pred CCceeecCc
Confidence 344444444
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.13 E-value=1e+02 Score=16.91 Aligned_cols=19 Identities=26% Similarity=0.663 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5633 159 IGMVGGFVFILIQLVLLVD 177 (198)
Q Consensus 159 i~~vga~~FiliQlIlLvD 177 (198)
.|.+.+.+|+++-.+.|+=
T Consensus 6 Lg~iAt~LFilvPt~FLli 24 (36)
T d2axtm1 6 LGLIATALFVLVPSVFLII 24 (36)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778889999998776653
No 9
>d1dfsa_ g.46.1.1 (A:) Metallothionein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.99 E-value=34 Score=18.03 Aligned_cols=6 Identities=67% Similarity=1.918 Sum_probs=3.2
Q ss_pred CccCCC
Q psy5633 21 CSCCTN 26 (198)
Q Consensus 21 C~~c~~ 26 (198)
|+|||.
T Consensus 4 csccpv 9 (31)
T d1dfsa_ 4 CSCCPV 9 (31)
T ss_dssp CSSSCS
T ss_pred cccCCc
Confidence 555553
No 10
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.13 E-value=2.3e+02 Score=24.02 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5633 153 GTTMMYIGMVGGFVFILIQLVLLVDFAHTWAE 184 (198)
Q Consensus 153 ~~~~~~i~~vga~~FiliQlIlLvDFa~~wne 184 (198)
...|+.++-+|+++..+-|++.+.++.+++..
T Consensus 477 ~~~~n~i~tiG~~i~~~g~l~f~~~~~~s~~~ 508 (538)
T d3dtua1 477 FATWNFVSSLGAFLSFASFLFFLGVIFYTLTR 508 (538)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999988854
Done!