RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5633
         (198 letters)



>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
           hydrolase, calcium transport, calcium binding binding;
           HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
           2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
           2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
           3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
          Length = 995

 Score = 28.8 bits (65), Expect = 1.5
 Identities = 16/160 (10%), Positives = 50/160 (31%), Gaps = 14/160 (8%)

Query: 28  KSSTLTRIMYAVMLLVGTIIACITLAPGLQDFLRKVPFCSESQSIAQSMGVVGSIDCQAV 87
           K   ++  ++   + +G  +   T+      F+        +                  
Sbjct: 826 KEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFE 885

Query: 88  VGYMAVYRICFGMGVFFLIMALM-MIGVKSSR-DNRAAIQNGMWGMKYVLV-ILIVIAAF 144
                ++     M +   ++  + M    +S  +N++ ++   W   ++L  I + ++  
Sbjct: 886 GLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLH 945

Query: 145 FI-----PADSPFGTTM------MYIGMVGGFVFILIQLV 173
           F+     P    F          + +  +   V  L +++
Sbjct: 946 FLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEIL 985


>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
           protein EXIT tunnel, cotranslational protein
           translocation, protein conducting channel; 6.48A {Canis
           lupus familiaris}
          Length = 476

 Score = 28.0 bits (62), Expect = 2.2
 Identities = 24/164 (14%), Positives = 45/164 (27%), Gaps = 9/164 (5%)

Query: 32  LTRIMYAVMLLVGTIIACITLAPGLQDFLRKVPFCSESQSIAQSMGVVGSIDCQAVVGYM 91
             R     ++ +   I    +    Q F   +P  S     A+  G   +   +    Y 
Sbjct: 234 FYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKS-----ARYRGQYNTYPIKLF--YT 286

Query: 92  AVYRICFGMGVFFLIMALMMIGVKSSRDNRAAIQNGMWGM--KYVLVILIVIAAFFIPAD 149
           +   I     +   +  +  +       N      G W             +        
Sbjct: 287 SNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLS 346

Query: 150 SPFGTTMMYIGMVGGFVFILIQLVLLVDFAHTWAEVWVSNYEET 193
            P     +    V   V+I+  L     F+ TW EV  S+ ++ 
Sbjct: 347 PPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDV 390


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 4.6
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 19  SLCSCCTNGKSSTLTRIMYAVMLLVGTII-ACITLAPGLQDFLRKVPFCSESQSIAQSMG 77
           SL     + +   L R +        +II   I       D  + V  C +  +I +S  
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIES-- 361

Query: 78  VVGSIDCQAVVGYMAVYRICFGMGVF 103
              S++      Y  ++       VF
Sbjct: 362 ---SLNVLEPAEYRKMFDRLS---VF 381


>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A
          {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A
          1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A
          3lb8_C* 1put_A 1gpx_A
          Length = 106

 Score = 25.2 bits (56), Expect = 8.4
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 10 ACCCGSMACSLC 21
            C GS +C+ C
Sbjct: 37 GDCGGSASCATC 48


>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein;
          2.30A {Novosphingobium aromaticivorans}
          Length = 104

 Score = 25.2 bits (56), Expect = 8.6
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 10 ACCCGSMACSLC 21
          A C G  +C+ C
Sbjct: 37 ALCGGCCSCATC 48


>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol
          SIDE CHA cleavage, structural genomics; HET: HEM HC9;
          2.17A {Homo sapiens} PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A
          1e6e_B* 1cje_A
          Length = 123

 Score = 25.3 bits (56), Expect = 8.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 10 ACCCGSMACSLC 21
            C G++ACS C
Sbjct: 43 GACEGTLACSTC 54


>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular
          electron TRA electron transport, metal-binding; HET:
          RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A
          3n9y_C* 2jqr_B* 3na0_C*
          Length = 108

 Score = 24.9 bits (55), Expect = 9.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 10 ACCCGSMACSLC 21
            C G++ACS C
Sbjct: 44 GACEGTLACSTC 55


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.332    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,015,440
Number of extensions: 178366
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 64
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.3 bits)