RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5633
         (198 letters)



>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein
           L2 {Escherichia coli [TaxId: 562]}
          Length = 145

 Score = 28.7 bits (64), Expect = 0.26
 Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 15/88 (17%)

Query: 43  VGTIIACITLAPGLQDFLRKVPFCSESQSIAQSMGVVGSIDCQAVVGYMAVYRICFGMGV 102
           VG+ +  + + PG     +       + +  Q           A  G     R+  G   
Sbjct: 12  VGSTVHNVEMKPG-----KGGQLARSAGTYVQ---------IVARDGAYVTLRLRSGEMR 57

Query: 103 FFLIMALMMIGVKSSRDNRAAIQNGMWG 130
                    +G +           G  G
Sbjct: 58  KVEADCRATLG-EVGNAEHMLRVLGKAG 84


>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 248

 Score = 28.3 bits (63), Expect = 0.61
 Identities = 13/60 (21%), Positives = 21/60 (35%)

Query: 122 AAIQNGMWGMKYVLVILIVIAAFFIPADSPFGTTMMYIGMVGGFVFILIQLVLLVDFAHT 181
                G +      +IL     +       +    +Y GM G  +F+L  LV  +  A T
Sbjct: 21  LMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFT 80


>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein
           L2 {Thermus thermophilus [TaxId: 274]}
          Length = 147

 Score = 26.0 bits (57), Expect = 2.1
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 43  VGTIIACITLAPGLQDFLRKVPFCSESQSIAQSMGVVGSIDCQAVVGYMAVYRICFGMGV 102
           VGT++  + L P     L +                  S   Q   G   + R+  G   
Sbjct: 12  VGTVVHAVELEPKKGAKLARAAGT--------------SAQIQGREGDYVILRLPSGELR 57

Query: 103 FFLIMALMMIGVKSSRDNRAAIQNGMWGMKYVLVILIVIAAFFIPADSPFG 153
                    +G   + D++  +       +++     V  A   P D P G
Sbjct: 58  KVHGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHG 108


>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 209

 Score = 25.7 bits (56), Expect = 3.9
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 7/61 (11%)

Query: 103 FFLIMALMMIGVKSSRDNRAAIQNGMWGMKYVLVILIVIAAFFIPADSPFGTTMMYIGMV 162
           +   + +   GV            G+ G        +V+A  +   D   G    Y G  
Sbjct: 31  WRFRVQVSESGVHRP------HVAGIHGRSNDGAYSLVLAGGY-EDDVDNGNYFTYTGSG 83

Query: 163 G 163
           G
Sbjct: 84  G 84


>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein
           L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
          Length = 147

 Score = 24.8 bits (54), Expect = 6.4
 Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 15/91 (16%)

Query: 43  VGTIIACITLAPGLQDFLRKVPFCSESQSIAQSMGVVGSIDCQAVVGYMAVYRICFGMGV 102
            G  +  +  +PG      +    + +Q +                  +AV ++  G   
Sbjct: 11  EGVPVCNVESSPGDGGKFARASGVN-AQLLTHDR-------------NVAVVKLPSGEMK 56

Query: 103 FFLIMALMMIGVKSSRDNRAAIQNGMWGMKY 133
                    IGV  +   R        G K+
Sbjct: 57  RLDPQCRATIGV-VAGGGRTDKPFVKAGNKH 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 732,153
Number of extensions: 32111
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 28
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.3 bits)