BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5634
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 56.2 bits (134), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GQ++RV+ A L+ +P++LILDEPT G+DP+ I LV++ K+ T+II TH I+
Sbjct: 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RVS A AL +P++L+ DEPT +DP L + + Q+ ++G KT+++ TH +
Sbjct: 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEMG 214
Query: 67 EAR 69
AR
Sbjct: 215 FAR 217
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL ++P +++ DEPT +D + I L ++ ++ KTV++ TH I
Sbjct: 148 GGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDIN 207
Query: 67 EARQAHTVI 75
AR +I
Sbjct: 208 VARFGERII 216
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL+ +PE+L+LDEP +D LLR + L ++ K+ T + TH
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195
Query: 67 EA 68
EA
Sbjct: 196 EA 197
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL ++P +++ D+PT +D + I L ++ ++ KTV++ TH I
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 67 EARQAHTVI 75
AR +I
Sbjct: 208 VARFGERII 216
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG++RRV+ A ++H+P++LILDEP VG+D + + +V+ K KTVI+ +H IE
Sbjct: 143 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL-RIVEKWKTLGKTVILISHDIE 201
Query: 67 EARQAHTVIDNYD 79
TVI++ D
Sbjct: 202 ------TVINHVD 208
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG++RRV+ A ++H+P++LILDEP VG+D + + +V+ K KTVI+ +H IE
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL-RIVEKWKTLGKTVILISHDIE 199
Query: 67 EARQAHTVIDNYD 79
TVI++ D
Sbjct: 200 ------TVINHVD 206
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL ++P +++ D+PT +D + I L ++ ++ KTV++ TH I
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 67 EARQAHTVI 75
AR +I
Sbjct: 208 VARFGERII 216
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GGQ + V ALM +P+++++DEP GV P L I+NH++++ G +II
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII 209
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GGQ + V ALM +P+++++DEP GV P L I+NH++++ G +II
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII 209
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
S GGQ +RV+ A AL +P++++ DEPT +DP + + + + Q+ +G T+++ TH
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG-MTMVVVTH 217
Query: 64 YIEEARQ 70
+ AR+
Sbjct: 218 EMGFARE 224
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
S GGQ +RV+ A AL +P++++ DEPT +DP + + + + Q+ +G T+++ TH
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG-MTMVVVTH 196
Query: 64 YIEEARQ 70
+ AR+
Sbjct: 197 EMGFARE 203
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+RV+ A AL+ +P++L+LDEP +DP +++ L + K TV+ TH
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
Query: 67 EAR 69
EAR
Sbjct: 190 EAR 192
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
GGQ++R+S A AL+ P++LILD+ T VDP+ + I + L + TK G T IIT
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK-GCTTFIIT 535
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GGQ + V ALM +P+++++D+P GV P L I+NH++++ G +II
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLII 209
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL P++L+ DEP +D +R+ + + Q+ + T + TH E
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207
Query: 67 EA 68
EA
Sbjct: 208 EA 209
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
S GGQ++RV+ A AL+ D +LILDE T +D ++I L ++ K NKTV++ H
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAH 537
Query: 64 YIEEARQAHTVI 75
+ QA ++
Sbjct: 538 RLSTIEQADEIL 549
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+RV+ A AL ++P LL DEPT +D + + + ++I +G ++++ TH E
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN-EGGTSIVMVTHERE 201
Query: 67 EARQAHTVIDNYD 79
A H ++ D
Sbjct: 202 LAELTHRTLEMKD 214
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQQ+RV+ A AL+ DP LL+LDEP +D +R S + ++ T+++ +H
Sbjct: 143 GGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P++L+ DE T +DP +SI L I + T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD 202
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+++P++LI DE T +D I ++ +I K +TVII H +
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS 199
Query: 67 EARQAHTVI 75
+ A +I
Sbjct: 200 TVKNADRII 208
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+++P++LI DE T +D I ++ +I K +TVII H +
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS 205
Query: 67 EARQAHTVI 75
+ A +I
Sbjct: 206 TVKNADRII 214
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+++P++LI DE T +D I ++ +I K +TVII H +
Sbjct: 144 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS 201
Query: 67 EARQAHTVI 75
+ A +I
Sbjct: 202 TVKNADRII 210
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+++P++LI DE T +D I ++ +I K +TVII H +
Sbjct: 144 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS 201
Query: 67 EARQAHTVI 75
+ A +I
Sbjct: 202 TVKNADRII 210
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++ V+ A AL+ P LLILD+ T +D + + L + + ++TV++ TH +
Sbjct: 159 GGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS 218
Query: 67 EARQAHTVI 75
A +AH ++
Sbjct: 219 LAERAHHIL 227
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P++L+ D+ T +DP +SI L I + T+++ TH ++
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV+ A AL +P++L+ D+ T +DP +SI L I + T+++ TH
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
G QQ+RV+ A AL+ DP LL+LDEP +D +R S + ++ T+++ +H
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A L D L LDEP +DP ++ I+ L + +G K +I+ TH +E
Sbjct: 143 GGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEG-KGIILVTHELE 201
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 39/66 (59%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+ ++ AL P+LL DEP++G+ P+L ++ + +I ++G +++ + +
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201
Query: 67 EARQAH 72
+ AH
Sbjct: 202 ALKVAH 207
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDP---LLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++R++ A AL+ +P++L+LDE T +D L Q + L+ DG +TV++ H
Sbjct: 517 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM----DG-RTVLVIAH 571
Query: 64 YIEEARQAHTV 74
++ + A+ V
Sbjct: 572 HLSTIKNANMV 582
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ D +LILDE T +D ++I L ++ K N+T ++ H +
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS 540
Query: 67 EARQAHTVI 75
QA ++
Sbjct: 541 TIEQADEIV 549
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ +P++L+LDE T +D + L + K +T II H +
Sbjct: 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS 614
Query: 67 EARQAHTVI 75
R A +I
Sbjct: 615 TIRNADLII 623
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ +P++L+LDE T +D + + L + ++G +T I+ H +
Sbjct: 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREG-RTCIVIAHRLN 1277
Query: 67 EARQAHTV 74
A +
Sbjct: 1278 TVMNADCI 1285
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL+ P++L+ DEP +D LR + + + ++ T + TH
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195
Query: 67 EA 68
EA
Sbjct: 196 EA 197
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG ++RV A+AL+ DP +LILDEPT +D L + I L ++ K T+I TH I
Sbjct: 157 GGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIA 216
Query: 67 EARQ 70
A +
Sbjct: 217 VAAE 220
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+++P++LI DE T +D I ++ +I K +TVII +
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAARLS 199
Query: 67 EARQAHTVI 75
+ A +I
Sbjct: 200 TVKNADRII 208
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+++P++LI DE T +D I ++ +I K +TVII +
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAARLS 205
Query: 67 EARQAHTVI 75
+ A +I
Sbjct: 206 TVKNADRII 214
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
G R++ A ALM +P L ILDEPT G+D L + + L Q +++G T+++++H + E
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG-LTILVSSHNMLE 208
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ D +LILDE T +D ++I L ++ K N+T ++ H +
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS 540
Query: 67 EARQAHTVI 75
+A ++
Sbjct: 541 TIEKADEIV 549
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDP---LLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++R++ A AL+ +P++L+LDE T +D L Q + L+ DG +TV++ H
Sbjct: 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM----DG-RTVLVIAH 540
Query: 64 YIEEARQAHTV 74
+ + A+ V
Sbjct: 541 RLSTIKNANMV 551
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I+ GGQ+ R+S A A+ D +L +LD P +D L + I+ V NKT I+ T
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 186
Query: 63 HYIEEARQAHTVI 75
+E ++A ++
Sbjct: 187 SKMEHLKKADKIL 199
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I+ GGQ+ R+S A A+ D +L +LD P +D L + I+ V NKT I+ T
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 187
Query: 63 HYIEEARQAHTVI 75
+E ++A ++
Sbjct: 188 SKMEHLKKADKIL 200
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++ V+ A AL+ P LLILD T +D + + L + + ++TV++ T +
Sbjct: 159 GGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218
Query: 67 EARQAHTVI 75
A +AH ++
Sbjct: 219 LAERAHHIL 227
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ +P++L+LDE T +D +++ + ++G T++I H +
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDT-ESEAVVQAALDKAREGRTTIVI-AHRLS 586
Query: 67 EARQAHTVIDNYD 79
R A VI +D
Sbjct: 587 TVRNA-DVIAGFD 598
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ P +L+LDE T +D + + L + ++G +T I+ H +
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREG-RTCIVIAHRLS 1231
Query: 67 EARQAHTVI 75
+ A ++
Sbjct: 1232 TIQNADLIV 1240
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
S GGQ++ + A A+ + +L++LDEPT +D + + + L+ + + N TV+ TTH
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ +P++L+LDE T +D +++ + ++G T++I H +
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDT-ESEAVVQAALDKAREGRTTIVI-AHRLS 586
Query: 67 EARQAHTVIDNYD 79
R A VI +D
Sbjct: 587 TVRNA-DVIAGFD 598
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ P +L+LDE T +D + + L + ++G +T I+ H +
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREG-RTCIVIAHRLS 1231
Query: 67 EARQAHTVI 75
+ A ++
Sbjct: 1232 TIQNADLIV 1240
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV+ A A++ +P++L++DEP +D LR ++ + ++ + T I TH
Sbjct: 145 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV+ A A++ +P++L++DEP +D LR ++ + ++ + T I TH
Sbjct: 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ A AL+ P LL+LDEP VD + + L + ++ + ++ TH +
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 67 EA 68
EA
Sbjct: 189 EA 190
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I+ GGQ+ R+S A A+ D +L +LD P +D L + I+ V NKT I+ T
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 216
Query: 63 HYIEEARQAHTVI 75
+E ++A ++
Sbjct: 217 SKMEHLKKADKIL 229
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I+ GGQ+ R+S A A+ D +L +LD P +D L + I+ V NKT I+ T
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 216
Query: 63 HYIEEARQAHTVI 75
+E ++A ++
Sbjct: 217 SKMEHLKKADKIL 229
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I+ GGQ+ R+S A A+ D +L +LD P +D L + I+ V NKT I+ T
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 217
Query: 63 HYIEEARQAHTVI 75
+E ++A ++
Sbjct: 218 SKMEHLKKADKIL 230
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I+ GGQ+ R+S A A+ D +L +LD P +D L + I+ V NKT I+ T
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 199
Query: 63 HYIEEARQAHTVI 75
+E ++A ++
Sbjct: 200 SKMEHLKKADKIL 212
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A++ P++ ++DEP +D LR + L ++ + T I TH
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 67 EA 68
EA
Sbjct: 202 EA 203
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++R++ A L+ DP+++I DE T +D + + K N+T+II H +
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLS 215
Query: 67 EARQAHTVI 75
A ++I
Sbjct: 216 TISSAESII 224
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70
DPEL++LDEP +D LR+ I ++ + K+ + +H EEA Q
Sbjct: 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQ 204
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV+ L+ +P + +LDEP +D LR + + ++ K +T+I TH
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV+ L+ +P + +LDEP +D LR + + ++ K +T+I TH
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
GQ++ V+ A AL+ P LLILD T +D + + L + + ++TV++ T +
Sbjct: 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL 219
Query: 68 ARQAHTVI 75
A +AH ++
Sbjct: 220 AERAHHIL 227
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
++ GGQ+ R+S A A+ D +L +LD P +D + ++ V NKT I+ T
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV-CKLMANKTRILVT 217
Query: 63 HYIEEARQAHTVI 75
+E R+A ++
Sbjct: 218 SKMEHLRKADKIL 230
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
++ GGQ+ R+S A A+ D +L +LD P +D + ++ V NKT I+ T
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV-CKLMANKTRILVT 217
Query: 63 HYIEEARQAHTVI 75
+E R+A ++
Sbjct: 218 SKMEHLRKADKIL 230
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
++ GGQ+ R+S A A+ D +L +LD P +D + ++ V NKT I+ T
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV-CKLMANKTRILVT 217
Query: 63 HYIEEARQAHTVI 75
+E R+A ++
Sbjct: 218 SKMEHLRKADKIL 230
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
++ GGQ+ R+S A A+ D +L +LD P +D + ++ V NKT I+ T
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV-CKLMANKTRILVT 217
Query: 63 HYIEEARQAHTVI 75
+E R+A ++
Sbjct: 218 SKMEHLRKADKIL 230
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
++ GGQ+ R+S A A+ D +L +LD P +D + ++ V NKT I+ T
Sbjct: 158 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV-CKLMANKTRILVT 216
Query: 63 HYIEEARQAHTVI 75
+E R+A ++
Sbjct: 217 SKMEHLRKADKIL 229
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTHYIE 66
G+++RV A AL P++LILDEP G+D + R+S+ + L ++ I TH+IE
Sbjct: 165 GEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFIE 224
Query: 67 E 67
E
Sbjct: 225 E 225
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV+ L+ +P + +LD+P +D LR + + ++ K +T+I TH
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ A L+ D ++ +LDEP+ +D R ++ + + + KT ++ H
Sbjct: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ A AL+ DEP+ +D R + + ++ +G K V++ H
Sbjct: 217 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG-KAVLVVEH 272
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ A L+ D ++ +LDEP+ +D R ++ + + + KT ++ H
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ A AL+ DEP+ +D R + + ++ +G K V++ H
Sbjct: 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG-KAVLVVEH 286
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ A L+ D ++ +LDEP+ +D R ++ + + + KT ++ H
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Score = 32.0 bits (71), Expect = 0.087, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ A AL+ + DEP+ +D R + + +++++G K+V++ H
Sbjct: 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG-KSVLVVEH 216
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R+S A +++P +LILDE T +D I L ++KD +T +I H +
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD--RTTLIVAHRLS 537
Query: 67 EARQAHTVI 75
A ++
Sbjct: 538 TITHADKIV 546
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I+ GQQ ++S A A+ D +L +LD P +D L + I+ V NKT I+ T
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 217
Query: 63 HYIEEARQAHTVI 75
+E ++A ++
Sbjct: 218 SKMEHLKKADKIL 230
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I+ GQQ ++S A A+ D +L +LD P +D L + I+ V NKT I+ T
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 216
Query: 63 HYIEEARQAHTVI 75
+E ++A ++
Sbjct: 217 SKMEHLKKADKIL 229
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ A ++ P +++LDE T +D ++I L ++ N+T I+ H +
Sbjct: 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC--ANRTTIVVAHRLS 250
Query: 67 EARQAHTVI 75
A ++
Sbjct: 251 TVVNADQIL 259
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A++ P++ + DEP +D LR L ++ + T I TH
Sbjct: 145 GGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQV 204
Query: 67 EA 68
EA
Sbjct: 205 EA 206
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG---NKTVIITTH 63
GGQ++RVS A A+ + ++ + D+P VD + + I+ ++ I G NKT I+ TH
Sbjct: 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV--IGPKGMLKNKTRILVTH 187
Query: 64 YIEEARQAHTVI 75
+ Q +I
Sbjct: 188 SMSYLPQVDVII 199
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
GGQ++R++ A A + +P++L+LDE T +D + L + K G T++I
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIA 195
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+ GG+++R + +PEL ILDE G+D + + + V +DG ++ II T
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG-VNSLRDGKRSFIIVT 202
Query: 63 HY 64
HY
Sbjct: 203 HY 204
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 7 GGQQRRVSFAVALMHDPE---LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +R+ A L + +LDEPT G+ P + + LV++ GN TVI H
Sbjct: 733 GGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN-TVIAVEH 791
Query: 64 YIEEARQAHTVID 76
++ + V+D
Sbjct: 792 KMQVVAASDWVLD 804
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 8 GQQRRVSFAVALMHD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65
G+ +R+ A L + + +LDEP+ G+ P +++ + L + + GN ++ + H +
Sbjct: 383 GELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN-SLFVVEHDL 441
Query: 66 EEARQAHTVID 76
+ R+A ++D
Sbjct: 442 DVIRRADWLVD 452
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+ GG+++R + +PEL ILDE G+D + + + V +DG ++ II T
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG-VNSLRDGKRSFIIVT 221
Query: 63 HY 64
HY
Sbjct: 222 HY 223
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
GQ++ ++ A + +P++LILDE T VD +SI + ++ + KT II H +
Sbjct: 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLNT 552
Query: 68 ARQAHTVI 75
+ A +I
Sbjct: 553 IKNADLII 560
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++ V+ A AL+ P +LILD+ T +D + + L + + +++V++ T ++
Sbjct: 157 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 216
Query: 67 EARQAHTVI 75
QA ++
Sbjct: 217 LVEQADHIL 225
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 7 GGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
GG+ +R+ A + + +LDEPT+G+ P + + L ++ GN TVI+ H
Sbjct: 467 GGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN-TVIVVEHD 525
Query: 65 IEEARQAHTVID 76
E R A +ID
Sbjct: 526 EEVIRNADHIID 537
Score = 32.3 bits (72), Expect = 0.074, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 7 GGQQRRVSFAVALMHDPE---LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +R+ A L L ILDEPTVG+ + + L ++ GN TVI+ H
Sbjct: 808 GGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN-TVIVIEH 866
Query: 64 YIEEARQAHTVID 76
++ + A +ID
Sbjct: 867 NLDVIKNADHIID 879
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI 59
G RRV A L+ + E+ +LD+P V +D + + +++I K+ +I
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.1 bits (74), Expect = 0.040, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GQ V ++AL PE++ LDEP VD R I ++ + K+G I+ TH ++
Sbjct: 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG----ILVTHELD 186
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.7 bits (73), Expect = 0.053, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ+ ++ A P L++LDEPT +D R S+ L + K+ VII TH E
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSL-GALSKALKEFEGGVIIITHSAE 959
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL 47
GG + +++ A A++ + ++L+LDEPT +D + + N+L
Sbjct: 551 GGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.7 bits (73), Expect = 0.053, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ+ ++ A P L++LDEPT +D R S+ L + K+ VII TH E
Sbjct: 898 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSL-GALSKALKEFEGGVIIITHSAE 953
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL 47
GG + +++ A A++ + ++L+LDEPT +D + + N+L
Sbjct: 545 GGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 585
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.7 bits (73), Expect = 0.053, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ+ ++ A P L++LDEPT +D R S+ L + K+ VII TH E
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSL-GALSKALKEFEGGVIIITHSAE 959
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 1 MEISS-RGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL 47
M IS+ GG + +++ A A++ + ++L+LDEPT +D + + N+L
Sbjct: 544 MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.0 bits (71), Expect = 0.089, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 7 GGQQRRVSFAVALMHDPE---LLILDEPTVG--VDPLLR-QSIWNHLVQITKDGNKTVII 60
GG+ +RV A L L ILDEPT G VD + R + + LV D TV++
Sbjct: 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV----DNGDTVLV 903
Query: 61 TTHYIEEARQAHTVID 76
H ++ + A +ID
Sbjct: 904 IEHNLDVIKTADYIID 919
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 7 GGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GG+Q+RV A L P L LDEPT +D +Q L Q+T+ V
Sbjct: 144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203
Query: 61 TTH 63
H
Sbjct: 204 VLH 206
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
G ++ + A +++ ++L+LDEP+ +DP+ Q I L Q D TVI+ IE
Sbjct: 159 GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC--TVILCEARIE 215
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 7 GGQQRRVSFAVAL---MHDPELLILDEPTVG--VDPLLR-QSIWNHLVQITKDGNKTVII 60
GG+ +RV A L + L ILDEPT G VD + R + + LV D TV++
Sbjct: 546 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV----DNGDTVLV 601
Query: 61 TTHYIEEARQAHTVID 76
H ++ + A +ID
Sbjct: 602 IEHNLDVIKTADYIID 617
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 7 GGQQRRVSFAVAL---MHDPELLILDEPTVG--VDPLLR-QSIWNHLVQITKDGNKTVII 60
GG+ +RV A L + L ILDEPT G VD + R + + LV D TV++
Sbjct: 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV----DNGDTVLV 903
Query: 61 TTHYIEEARQAHTVID 76
H ++ + A +ID
Sbjct: 904 IEHNLDVIKTADYIID 919
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG +R+ A +L+ + ++ I D+P+ +D R ++ + ++ K NK VI+ H
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDH 195
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +++ A L + +L +LD+P+ +D R + + ++T++ I H
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
>pdb|1YTD|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Native Structure
pdb|1YTE|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Phosphoribosylpyrophosphate Bound Structure
pdb|1YTK|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
With Nicotinate Mononucleotide
pdb|2I1O|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
Length = 398
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 27 ILDEPTVGVDP------LLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDNYD 79
++D+ VG P L + W ++ TK+G K+V++ Y++E A + + +D
Sbjct: 177 LIDQDPVGTMPHALSIMLGDEEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFD 235
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 45 NHLVQITKDGNKTVIITTHYIEEARQAHTVID 76
NHLV DGN+TV+I + EA + ID
Sbjct: 518 NHLVYAKTDGNETVMIIINRSNEAAEIPMPID 549
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 45 NHLVQITKDGNKTVIITTHYIEEARQAHTVID 76
NHLV DGN+TV+I + EA + ID
Sbjct: 518 NHLVYAKTDGNETVMIIINRSNEAAEIPMPID 549
>pdb|3RY3|A Chain A, Putative Solute-Binding Protein From Yersinia Pestis.
pdb|3RY3|B Chain B, Putative Solute-Binding Protein From Yersinia Pestis
Length = 528
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 18 ALMHDPELLILDEPTVGVDPLLRQSIWNH 46
A H +L I DEPT G DP L W+H
Sbjct: 29 AATHTLQLAIGDEPTEGFDPXLG---WSH 54
>pdb|3H3Z|A Chain A, Crystal Structure Of A Putative Cyclic Nucleotide
Binding Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3
At 2.35 A Resolution
pdb|3H3Z|B Chain B, Crystal Structure Of A Putative Cyclic Nucleotide
Binding Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3
At 2.35 A Resolution
Length = 235
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 25 LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDNY 78
LLI P VD LL Q++W + D +T+ + E+A+ H VID +
Sbjct: 15 LLIRSLPEQHVDALLSQAVWR-----SYDRGETLFLQE---EKAQAIHVVIDGW 60
>pdb|3FX3|A Chain A, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
pdb|3FX3|B Chain B, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
Length = 237
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 25 LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDNY 78
LLI P VD LL Q++W + D +T+ + E+A+ H VID +
Sbjct: 17 LLIRSLPEQHVDALLSQAVWR-----SYDRGETLFLQE---EKAQAIHVVIDGW 62
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 7 GGQQ------RRVSFAVALMHDP-ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI 59
GG+Q R++ A AL+ + E +ILDEPTV +D R + + + K + +I
Sbjct: 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKL-AEIFRKVKSIPQMII 341
Query: 60 ITTH 63
IT H
Sbjct: 342 ITHH 345
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ +AL ++ ++DEP+ +D R + + KT I H
Sbjct: 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,325,094
Number of Sequences: 62578
Number of extensions: 74759
Number of successful extensions: 322
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 116
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)