Query psy5634
Match_columns 79
No_of_seqs 212 out of 1439
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:39:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 4.7E-31 1E-35 176.3 9.2 75 1-76 133-208 (240)
2 COG1136 SalX ABC-type antimicr 100.0 2.1E-30 4.5E-35 173.9 9.4 77 1-77 139-215 (226)
3 COG1116 TauB ABC-type nitrate/ 100.0 3.1E-29 6.6E-34 169.7 9.1 76 1-76 127-203 (248)
4 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.8E-28 4E-33 166.7 9.3 73 2-75 137-210 (254)
5 COG1135 AbcC ABC-type metal io 100.0 1.1E-28 2.5E-33 171.4 8.3 75 1-75 138-213 (339)
6 COG1127 Ttg2A ABC-type transpo 100.0 2.1E-28 4.5E-33 165.5 8.3 77 1-77 142-219 (263)
7 COG1124 DppF ABC-type dipeptid 99.9 7.9E-28 1.7E-32 162.6 8.6 76 1-76 138-214 (252)
8 COG1122 CbiO ABC-type cobalt t 99.9 4.9E-28 1.1E-32 163.2 7.3 76 1-76 135-211 (235)
9 cd03259 ABC_Carb_Solutes_like 99.9 4.3E-27 9.3E-32 154.4 9.5 75 2-76 128-203 (213)
10 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 4.2E-27 9.2E-32 154.7 9.4 75 2-76 138-212 (218)
11 TIGR00960 3a0501s02 Type II (G 99.9 6E-27 1.3E-31 154.0 9.8 74 2-76 136-210 (216)
12 TIGR02211 LolD_lipo_ex lipopro 99.9 6E-27 1.3E-31 154.2 9.8 75 2-76 139-213 (221)
13 cd03225 ABC_cobalt_CbiO_domain 99.9 7.1E-27 1.5E-31 153.0 10.0 74 2-76 132-206 (211)
14 COG1125 OpuBA ABC-type proline 99.9 2.9E-27 6.2E-32 161.6 8.2 76 1-76 132-208 (309)
15 COG0444 DppD ABC-type dipeptid 99.9 3.5E-27 7.5E-32 164.1 8.8 79 1-79 150-229 (316)
16 cd03261 ABC_Org_Solvent_Resist 99.9 5.7E-27 1.2E-31 155.9 9.4 75 2-76 134-209 (235)
17 COG1131 CcmA ABC-type multidru 99.9 4.8E-27 1E-31 162.1 9.3 75 2-76 134-209 (293)
18 cd03293 ABC_NrtD_SsuB_transpor 99.9 9.5E-27 2.1E-31 153.5 9.9 75 2-76 129-204 (220)
19 cd03235 ABC_Metallic_Cations A 99.9 1.2E-26 2.5E-31 152.3 10.1 74 2-76 130-204 (213)
20 TIGR02314 ABC_MetN D-methionin 99.9 7.2E-27 1.6E-31 164.3 9.6 76 1-76 137-213 (343)
21 cd03256 ABC_PhnC_transporter A 99.9 1.1E-26 2.5E-31 154.4 9.8 75 2-76 142-217 (241)
22 cd03257 ABC_NikE_OppD_transpor 99.9 1.6E-26 3.4E-31 152.5 9.8 75 2-76 143-218 (228)
23 PRK11022 dppD dipeptide transp 99.9 1.2E-26 2.7E-31 161.8 9.7 76 2-77 151-227 (326)
24 TIGR01184 ntrCD nitrate transp 99.9 1.5E-26 3.2E-31 154.0 9.7 75 2-76 112-187 (230)
25 cd03226 ABC_cobalt_CbiO_domain 99.9 1.8E-26 4E-31 150.8 9.9 74 2-76 124-198 (205)
26 TIGR02673 FtsE cell division A 99.9 1.8E-26 3.9E-31 151.4 9.7 74 2-76 135-209 (214)
27 cd03301 ABC_MalK_N The N-termi 99.9 1.9E-26 4.1E-31 151.2 9.8 74 2-75 128-202 (213)
28 PRK11629 lolD lipoprotein tran 99.9 1.9E-26 4.1E-31 153.4 9.9 74 2-75 143-216 (233)
29 COG1120 FepC ABC-type cobalami 99.9 1.5E-26 3.3E-31 157.7 9.3 74 2-75 136-210 (258)
30 PRK15093 antimicrobial peptide 99.9 1.8E-26 3.8E-31 161.1 9.8 75 2-76 156-231 (330)
31 PRK10584 putative ABC transpor 99.9 2.5E-26 5.3E-31 152.1 9.8 75 2-76 144-218 (228)
32 TIGR02315 ABC_phnC phosphonate 99.9 2.4E-26 5.2E-31 153.2 9.8 75 2-76 143-218 (243)
33 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.8E-26 6E-31 150.4 9.9 75 2-76 126-201 (211)
34 cd03297 ABC_ModC_molybdenum_tr 99.9 2.7E-26 5.9E-31 150.8 9.9 75 2-76 129-204 (214)
35 PRK15079 oligopeptide ABC tran 99.9 2.2E-26 4.7E-31 161.0 9.8 77 1-77 158-235 (331)
36 cd03296 ABC_CysA_sulfate_impor 99.9 2.5E-26 5.4E-31 153.3 9.5 75 2-76 134-209 (239)
37 TIGR01188 drrA daunorubicin re 99.9 2.3E-26 4.9E-31 158.5 9.5 74 2-76 122-196 (302)
38 PRK11308 dppF dipeptide transp 99.9 2.7E-26 5.8E-31 160.3 10.0 77 1-77 151-228 (327)
39 PRK13637 cbiO cobalt transport 99.9 3.4E-26 7.3E-31 156.9 10.1 75 2-76 142-217 (287)
40 cd03265 ABC_DrrA DrrA is the A 99.9 3.2E-26 6.9E-31 151.0 9.5 75 2-76 129-204 (220)
41 PRK13537 nodulation ABC transp 99.9 2.6E-26 5.6E-31 158.9 9.4 73 2-75 136-209 (306)
42 COG1117 PstB ABC-type phosphat 99.9 1.8E-26 3.9E-31 154.5 8.3 71 2-74 147-218 (253)
43 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 3.4E-26 7.4E-31 152.4 9.3 75 2-76 130-204 (236)
44 PRK09473 oppD oligopeptide tra 99.9 3.6E-26 7.8E-31 159.8 9.8 76 2-77 159-235 (330)
45 PRK11650 ugpC glycerol-3-phosp 99.9 3.4E-26 7.5E-31 161.3 9.7 75 2-76 132-207 (356)
46 PRK13634 cbiO cobalt transport 99.9 4.7E-26 1E-30 156.4 10.1 76 1-76 142-218 (290)
47 COG3638 ABC-type phosphate/pho 99.9 1.6E-26 3.4E-31 156.0 7.5 74 2-75 145-219 (258)
48 PRK11248 tauB taurine transpor 99.9 4.5E-26 9.8E-31 154.0 9.7 75 2-76 126-201 (255)
49 PRK11153 metN DL-methionine tr 99.9 4.2E-26 9.1E-31 160.0 9.8 75 2-76 138-213 (343)
50 cd03294 ABC_Pro_Gly_Bertaine T 99.9 5.5E-26 1.2E-30 154.4 10.1 75 2-76 158-233 (269)
51 cd03219 ABC_Mj1267_LivG_branch 99.9 4.8E-26 1E-30 151.2 9.6 74 2-76 141-215 (236)
52 cd03292 ABC_FtsE_transporter F 99.9 5.8E-26 1.3E-30 148.8 9.7 74 2-76 134-208 (214)
53 TIGR01186 proV glycine betaine 99.9 4.7E-26 1E-30 161.3 9.8 76 1-76 126-202 (363)
54 PRK13650 cbiO cobalt transport 99.9 6.3E-26 1.4E-30 154.9 10.1 75 2-76 138-212 (279)
55 cd03214 ABC_Iron-Siderophores_ 99.9 8E-26 1.7E-30 145.8 9.9 75 2-76 95-170 (180)
56 cd03237 ABC_RNaseL_inhibitor_d 99.9 6.5E-26 1.4E-30 153.0 9.7 75 2-76 113-188 (246)
57 TIGR03258 PhnT 2-aminoethylpho 99.9 5.4E-26 1.2E-30 160.8 9.6 76 1-76 134-211 (362)
58 PRK11831 putative ABC transpor 99.9 6.8E-26 1.5E-30 153.9 9.8 75 2-76 141-216 (269)
59 COG4555 NatA ABC-type Na+ tran 99.9 3.2E-26 6.8E-31 152.4 7.9 75 1-76 130-205 (245)
60 TIGR02770 nickel_nikD nickel i 99.9 6.8E-26 1.5E-30 150.6 9.6 75 2-76 123-198 (230)
61 cd03258 ABC_MetN_methionine_tr 99.9 7.2E-26 1.6E-30 150.3 9.7 75 2-76 138-213 (233)
62 PRK11247 ssuB aliphatic sulfon 99.9 7.2E-26 1.6E-30 153.6 9.8 75 2-76 131-206 (257)
63 PRK10851 sulfate/thiosulfate t 99.9 6.3E-26 1.4E-30 159.9 9.9 76 1-76 133-209 (353)
64 TIGR01288 nodI ATP-binding ABC 99.9 5.7E-26 1.2E-30 156.6 9.5 74 2-76 133-207 (303)
65 PRK13646 cbiO cobalt transport 99.9 7.9E-26 1.7E-30 154.9 10.0 75 2-76 143-218 (286)
66 cd03268 ABC_BcrA_bacitracin_re 99.9 5.7E-26 1.2E-30 148.6 8.9 74 2-76 124-198 (208)
67 cd03262 ABC_HisP_GlnQ_permease 99.9 9.7E-26 2.1E-30 147.6 10.0 74 2-76 133-207 (213)
68 PRK11432 fbpC ferric transport 99.9 6E-26 1.3E-30 159.9 9.6 76 1-76 133-209 (351)
69 COG1123 ATPase components of v 99.9 4.3E-26 9.2E-31 167.3 9.1 78 1-78 151-229 (539)
70 PRK11000 maltose/maltodextrin 99.9 6E-26 1.3E-30 160.6 9.5 75 2-76 131-206 (369)
71 PRK11300 livG leucine/isoleuci 99.9 8.8E-26 1.9E-30 151.5 9.8 75 2-76 151-226 (255)
72 cd03260 ABC_PstB_phosphate_tra 99.9 9.4E-26 2E-30 149.2 9.8 73 2-76 139-212 (227)
73 TIGR03410 urea_trans_UrtE urea 99.9 9E-26 2E-30 149.5 9.7 75 2-76 129-204 (230)
74 PRK10908 cell division protein 99.9 1.1E-25 2.4E-30 148.6 9.9 74 2-76 135-209 (222)
75 TIGR01187 potA spermidine/putr 99.9 8.4E-26 1.8E-30 157.4 9.7 75 2-76 98-173 (325)
76 cd03266 ABC_NatA_sodium_export 99.9 8.5E-26 1.8E-30 148.5 9.2 74 2-76 134-208 (218)
77 PRK13536 nodulation factor exp 99.9 8.3E-26 1.8E-30 158.6 9.6 74 2-76 170-244 (340)
78 TIGR02323 CP_lyasePhnK phospho 99.9 1.1E-25 2.4E-30 151.0 9.8 75 2-76 146-221 (253)
79 PRK13647 cbiO cobalt transport 99.9 1.1E-25 2.4E-30 153.4 9.9 74 2-76 136-210 (274)
80 PRK11701 phnK phosphonate C-P 99.9 1.2E-25 2.7E-30 151.4 10.0 75 2-76 149-224 (258)
81 cd03224 ABC_TM1139_LivF_branch 99.9 1.1E-25 2.3E-30 148.2 9.5 74 2-76 130-204 (222)
82 COG3840 ThiQ ABC-type thiamine 99.9 7.1E-26 1.5E-30 149.1 8.5 75 2-76 127-202 (231)
83 PRK13641 cbiO cobalt transport 99.9 1.3E-25 2.8E-30 153.9 10.2 74 2-76 143-217 (287)
84 COG2884 FtsE Predicted ATPase 99.9 8.4E-26 1.8E-30 149.1 8.7 70 2-72 135-204 (223)
85 PRK13645 cbiO cobalt transport 99.9 1.2E-25 2.5E-30 154.0 9.7 75 2-76 148-223 (289)
86 cd03218 ABC_YhbG The ABC trans 99.9 1.3E-25 2.8E-30 148.8 9.6 74 2-76 131-205 (232)
87 PRK09452 potA putrescine/sperm 99.9 1E-25 2.3E-30 159.9 9.7 76 1-76 141-217 (375)
88 TIGR03265 PhnT2 putative 2-ami 99.9 9.7E-26 2.1E-30 158.9 9.4 75 2-76 132-207 (353)
89 PRK13643 cbiO cobalt transport 99.9 1.4E-25 3E-30 153.9 10.0 74 2-76 142-216 (288)
90 TIGR03608 L_ocin_972_ABC putat 99.9 1.6E-25 3.5E-30 146.0 9.8 74 2-76 132-205 (206)
91 PRK10247 putative ABC transpor 99.9 1.5E-25 3.2E-30 148.7 9.7 75 2-76 135-209 (225)
92 PRK14250 phosphate ABC transpo 99.9 1.7E-25 3.6E-30 149.7 10.0 75 2-76 129-204 (241)
93 PRK13651 cobalt transporter AT 99.9 1.3E-25 2.8E-30 155.5 9.8 74 2-76 163-237 (305)
94 TIGR02769 nickel_nikE nickel i 99.9 1.5E-25 3.2E-30 151.8 9.8 75 2-76 148-223 (265)
95 PRK11264 putative amino-acid A 99.9 1.6E-25 3.4E-30 149.9 9.8 74 2-76 142-216 (250)
96 cd03246 ABCC_Protease_Secretio 99.9 1.8E-25 3.9E-30 143.3 9.7 71 5-76 97-167 (173)
97 PRK11144 modC molybdate transp 99.9 1.4E-25 3E-30 157.8 9.9 75 2-76 126-201 (352)
98 PRK10771 thiQ thiamine transpo 99.9 1.9E-25 4.1E-30 148.5 10.0 75 2-76 127-202 (232)
99 PRK13635 cbiO cobalt transport 99.9 1.8E-25 3.8E-30 152.8 10.0 75 2-76 138-212 (279)
100 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.4E-25 3.1E-30 149.8 9.3 75 2-76 133-208 (242)
101 cd03252 ABCC_Hemolysin The ABC 99.9 1.6E-25 3.5E-30 148.9 9.6 73 2-76 136-208 (237)
102 PRK10575 iron-hydroxamate tran 99.9 1.9E-25 4E-30 151.3 9.9 75 2-76 145-220 (265)
103 TIGR02142 modC_ABC molybdenum 99.9 1.5E-25 3.3E-30 157.6 9.8 75 2-76 129-204 (354)
104 PRK10070 glycine betaine trans 99.9 1.7E-25 3.7E-30 160.0 10.1 75 2-76 162-237 (400)
105 PRK09984 phosphonate/organopho 99.9 1.8E-25 4E-30 150.9 9.7 75 2-76 150-225 (262)
106 PRK13633 cobalt transporter AT 99.9 1.9E-25 4E-30 152.6 9.8 75 2-76 142-216 (280)
107 TIGR01277 thiQ thiamine ABC tr 99.9 2.4E-25 5.2E-30 146.4 9.9 75 2-76 126-201 (213)
108 PRK15134 microcin C ABC transp 99.9 1.4E-25 3.1E-30 163.6 9.7 75 2-76 154-229 (529)
109 PRK13638 cbiO cobalt transport 99.9 2.2E-25 4.8E-30 151.4 9.9 74 2-76 134-208 (271)
110 cd03267 ABC_NatA_like Similar 99.9 2E-25 4.4E-30 149.0 9.6 75 2-76 151-226 (236)
111 PRK13631 cbiO cobalt transport 99.9 2.2E-25 4.8E-30 155.3 10.1 74 2-76 174-248 (320)
112 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.3E-25 5E-30 148.0 9.8 73 2-75 140-213 (224)
113 cd03245 ABCC_bacteriocin_expor 99.9 1.9E-25 4.2E-30 147.0 9.3 72 3-76 139-210 (220)
114 PRK15112 antimicrobial peptide 99.9 2E-25 4.3E-30 151.4 9.6 74 2-75 147-221 (267)
115 cd03269 ABC_putative_ATPase Th 99.9 2E-25 4.3E-30 146.2 9.3 74 2-76 126-200 (210)
116 PRK11614 livF leucine/isoleuci 99.9 2E-25 4.4E-30 148.6 9.4 74 2-76 135-209 (237)
117 TIGR02324 CP_lyasePhnL phospho 99.9 2.9E-25 6.2E-30 146.7 10.0 74 2-76 147-221 (224)
118 PRK13649 cbiO cobalt transport 99.9 2.5E-25 5.4E-30 151.6 9.9 74 2-76 143-217 (280)
119 PRK10418 nikD nickel transport 99.9 2.7E-25 5.9E-30 149.6 10.0 74 2-75 138-212 (254)
120 PRK13636 cbiO cobalt transport 99.9 2.8E-25 6E-30 152.0 10.0 75 2-76 139-214 (283)
121 PRK11607 potG putrescine trans 99.9 2E-25 4.3E-30 158.6 9.6 76 1-76 146-222 (377)
122 TIGR03269 met_CoM_red_A2 methy 99.9 2.2E-25 4.8E-30 162.2 10.0 75 2-76 166-241 (520)
123 PRK13644 cbiO cobalt transport 99.9 3E-25 6.4E-30 151.3 10.0 74 2-76 134-207 (274)
124 PRK10253 iron-enterobactin tra 99.9 3E-25 6.5E-30 150.3 9.9 75 2-76 141-216 (265)
125 PRK15134 microcin C ABC transp 99.9 2.3E-25 5E-30 162.5 10.0 76 1-76 422-498 (529)
126 TIGR03771 anch_rpt_ABC anchore 99.9 3E-25 6.6E-30 147.2 9.7 73 2-75 111-184 (223)
127 cd03229 ABC_Class3 This class 99.9 3.7E-25 8E-30 142.4 9.8 72 5-76 101-173 (178)
128 cd03264 ABC_drug_resistance_li 99.9 2.3E-25 5E-30 146.0 9.0 73 2-76 128-201 (211)
129 PRK10619 histidine/lysine/argi 99.9 3.5E-25 7.5E-30 149.2 10.0 74 2-76 150-224 (257)
130 PRK13652 cbiO cobalt transport 99.9 3.3E-25 7.2E-30 151.1 10.1 75 2-76 135-210 (277)
131 PRK09493 glnQ glutamine ABC tr 99.9 3.3E-25 7.2E-30 147.7 9.8 73 2-75 134-207 (240)
132 cd03216 ABC_Carb_Monos_I This 99.9 4.5E-25 9.7E-30 140.8 9.9 71 5-76 83-154 (163)
133 PRK13642 cbiO cobalt transport 99.9 3.6E-25 7.8E-30 150.9 10.0 75 2-76 138-212 (277)
134 PRK10261 glutathione transport 99.9 2.5E-25 5.4E-30 165.4 9.9 76 1-76 460-536 (623)
135 cd03230 ABC_DR_subfamily_A Thi 99.9 4.2E-25 9.1E-30 141.6 9.6 71 5-76 96-167 (173)
136 PRK11231 fecE iron-dicitrate t 99.9 4.1E-25 8.9E-30 148.7 9.9 74 2-76 136-210 (255)
137 PRK13648 cbiO cobalt transport 99.9 3.6E-25 7.9E-30 150.2 9.6 75 2-76 140-214 (269)
138 COG1123 ATPase components of v 99.9 1.8E-25 3.9E-30 164.1 8.5 77 1-77 426-503 (539)
139 PRK09544 znuC high-affinity zi 99.9 4.2E-25 9E-30 149.2 9.7 75 2-76 118-193 (251)
140 TIGR03005 ectoine_ehuA ectoine 99.9 4.5E-25 9.7E-30 148.2 9.8 75 2-76 144-219 (252)
141 PRK14258 phosphate ABC transpo 99.9 5.4E-25 1.2E-29 148.8 10.2 75 2-76 148-223 (261)
142 PRK14242 phosphate transporter 99.9 4.4E-25 9.6E-30 148.1 9.7 73 2-76 147-220 (253)
143 TIGR03269 met_CoM_red_A2 methy 99.9 3E-25 6.6E-30 161.5 9.6 75 2-76 425-500 (520)
144 PRK10261 glutathione transport 99.9 3.4E-25 7.3E-30 164.7 10.0 76 1-76 165-241 (623)
145 PRK13549 xylose transporter AT 99.9 2.9E-25 6.2E-30 161.3 9.4 74 2-76 403-477 (506)
146 COG1118 CysA ABC-type sulfate/ 99.9 2.6E-25 5.6E-30 154.7 8.7 76 1-76 134-210 (345)
147 TIGR03415 ABC_choXWV_ATP choli 99.9 3.8E-25 8.2E-30 157.5 9.7 75 2-76 162-237 (382)
148 TIGR01978 sufC FeS assembly AT 99.9 5.5E-25 1.2E-29 146.5 9.9 71 4-75 144-216 (243)
149 TIGR01166 cbiO cobalt transpor 99.9 2.3E-25 4.9E-30 144.2 7.8 65 2-67 125-189 (190)
150 TIGR03411 urea_trans_UrtD urea 99.9 4.6E-25 1E-29 147.1 9.5 73 2-76 141-214 (242)
151 PRK14273 phosphate ABC transpo 99.9 5.4E-25 1.2E-29 147.9 9.8 73 2-76 148-221 (254)
152 cd03215 ABC_Carb_Monos_II This 99.9 5.7E-25 1.2E-29 142.0 9.5 71 5-76 105-176 (182)
153 PRK14268 phosphate ABC transpo 99.9 5.5E-25 1.2E-29 148.4 9.8 73 2-76 152-225 (258)
154 PRK13632 cbiO cobalt transport 99.9 5.2E-25 1.1E-29 149.7 9.7 74 2-75 140-213 (271)
155 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 5.4E-25 1.2E-29 146.4 9.6 73 2-76 137-209 (238)
156 PRK09536 btuD corrinoid ABC tr 99.9 4.9E-25 1.1E-29 157.8 10.0 73 2-75 137-210 (402)
157 PRK13640 cbiO cobalt transport 99.9 5.8E-25 1.3E-29 150.4 9.9 75 2-76 141-215 (282)
158 PRK09700 D-allose transporter 99.9 3.9E-25 8.5E-30 160.6 9.6 74 2-76 407-481 (510)
159 PRK13539 cytochrome c biogenes 99.9 4.9E-25 1.1E-29 144.7 9.1 73 2-76 125-197 (207)
160 TIGR00972 3a0107s01c2 phosphat 99.9 6.6E-25 1.4E-29 147.0 9.9 73 2-76 142-215 (247)
161 cd03247 ABCC_cytochrome_bd The 99.9 6.1E-25 1.3E-29 141.3 9.3 73 2-76 96-168 (178)
162 cd03248 ABCC_TAP TAP, the Tran 99.9 6.5E-25 1.4E-29 145.1 9.7 73 2-76 148-220 (226)
163 cd03254 ABCC_Glucan_exporter_l 99.9 6E-25 1.3E-29 145.4 9.5 73 2-76 137-209 (229)
164 PRK13548 hmuV hemin importer A 99.9 7E-25 1.5E-29 148.2 10.0 75 2-76 132-213 (258)
165 PRK09580 sufC cysteine desulfu 99.9 7.2E-25 1.6E-29 146.4 9.9 71 4-75 145-217 (248)
166 cd03238 ABC_UvrA The excision 99.9 8.9E-25 1.9E-29 141.9 10.0 74 2-76 85-160 (176)
167 PRK11124 artP arginine transpo 99.9 7.1E-25 1.5E-29 146.3 9.8 73 2-75 139-212 (242)
168 PRK15056 manganese/iron transp 99.9 7.7E-25 1.7E-29 148.9 10.0 73 2-75 140-213 (272)
169 cd03251 ABCC_MsbA MsbA is an e 99.9 6.5E-25 1.4E-29 145.6 9.4 73 2-76 136-208 (234)
170 PRK14245 phosphate ABC transpo 99.9 7.4E-25 1.6E-29 147.0 9.7 73 2-76 144-217 (250)
171 PRK10938 putative molybdenum t 99.9 5.7E-25 1.2E-29 159.0 9.8 74 2-76 133-207 (490)
172 PRK11288 araG L-arabinose tran 99.9 5.2E-25 1.1E-29 159.8 9.6 74 2-76 394-468 (501)
173 COG3839 MalK ABC-type sugar tr 99.9 2.7E-25 5.9E-30 156.2 7.8 76 1-76 130-206 (338)
174 cd03253 ABCC_ATM1_transporter 99.9 6.8E-25 1.5E-29 145.6 9.4 73 2-76 135-207 (236)
175 PRK10982 galactose/methyl gala 99.9 4.4E-25 9.6E-30 159.8 9.2 74 2-76 389-463 (491)
176 TIGR02633 xylG D-xylose ABC tr 99.9 5.4E-25 1.2E-29 159.5 9.5 74 2-76 401-475 (500)
177 TIGR03740 galliderm_ABC gallid 99.9 6.6E-25 1.4E-29 145.0 9.1 74 2-76 122-196 (223)
178 TIGR02982 heterocyst_DevA ABC 99.9 8.2E-25 1.8E-29 144.4 9.5 75 2-76 139-213 (220)
179 PRK14247 phosphate ABC transpo 99.9 8.7E-25 1.9E-29 146.5 9.6 73 2-76 144-217 (250)
180 COG4175 ProV ABC-type proline/ 99.9 3.8E-25 8.2E-30 154.7 8.1 75 1-75 161-236 (386)
181 PRK10419 nikE nickel transport 99.9 1.1E-24 2.3E-29 148.1 10.1 75 2-76 149-224 (268)
182 cd03263 ABC_subfamily_A The AB 99.9 7.6E-25 1.7E-29 144.2 9.0 73 2-76 131-204 (220)
183 PRK13639 cbiO cobalt transport 99.9 1E-24 2.2E-29 148.6 9.8 74 2-76 135-209 (275)
184 PRK14248 phosphate ABC transpo 99.9 9.9E-25 2.2E-29 147.8 9.8 73 2-76 162-235 (268)
185 COG4598 HisP ABC-type histidin 99.9 7.1E-25 1.5E-29 144.7 8.7 75 1-76 149-224 (256)
186 PRK10895 lipopolysaccharide AB 99.9 9.5E-25 2.1E-29 145.6 9.5 74 2-76 135-209 (241)
187 COG4181 Predicted ABC-type tra 99.9 7E-25 1.5E-29 143.6 8.6 76 1-76 143-218 (228)
188 PRK15439 autoinducer 2 ABC tra 99.9 5.8E-25 1.3E-29 160.1 9.1 74 2-76 401-475 (510)
189 PRK09700 D-allose transporter 99.9 7.8E-25 1.7E-29 159.1 9.7 74 2-76 143-217 (510)
190 TIGR02633 xylG D-xylose ABC tr 99.9 7.7E-25 1.7E-29 158.7 9.6 74 2-76 139-213 (500)
191 PRK13409 putative ATPase RIL; 99.9 8.8E-25 1.9E-29 162.1 10.1 76 1-76 450-526 (590)
192 cd03223 ABCD_peroxisomal_ALDP 99.9 1.3E-24 2.8E-29 139.0 9.5 71 2-76 89-159 (166)
193 PRK10762 D-ribose transporter 99.9 7.4E-25 1.6E-29 159.1 9.4 74 2-76 393-467 (501)
194 PRK14239 phosphate transporter 99.9 1.3E-24 2.7E-29 145.7 9.8 73 2-76 146-219 (252)
195 cd03270 ABC_UvrA_I The excisio 99.9 1.5E-24 3.2E-29 144.6 10.1 74 2-76 135-210 (226)
196 cd03300 ABC_PotA_N PotA is an 99.9 1.3E-24 2.8E-29 144.6 9.8 75 2-76 128-203 (232)
197 PRK13543 cytochrome c biogenes 99.9 1.1E-24 2.4E-29 143.6 9.3 73 2-75 135-208 (214)
198 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.6E-24 3.5E-29 141.7 10.0 73 3-76 103-177 (200)
199 PRK14259 phosphate ABC transpo 99.9 1.2E-24 2.5E-29 147.9 9.7 73 2-76 152-225 (269)
200 COG3842 PotA ABC-type spermidi 99.9 2.9E-25 6.4E-30 156.7 6.8 76 1-76 133-209 (352)
201 CHL00131 ycf16 sulfate ABC tra 99.9 1.5E-24 3.2E-29 145.3 9.9 72 4-76 151-224 (252)
202 PRK10762 D-ribose transporter 99.9 9.2E-25 2E-29 158.5 9.5 74 2-76 139-213 (501)
203 cd03222 ABC_RNaseL_inhibitor T 99.9 1.9E-24 4.1E-29 140.5 10.0 72 5-76 72-144 (177)
204 TIGR03873 F420-0_ABC_ATP propo 99.9 1.5E-24 3.2E-29 146.1 9.8 74 2-76 135-209 (256)
205 PRK14267 phosphate ABC transpo 99.9 1.3E-24 2.9E-29 145.8 9.5 73 2-76 147-220 (253)
206 cd03299 ABC_ModC_like Archeal 99.9 1.6E-24 3.5E-29 144.5 9.9 75 2-76 127-202 (235)
207 cd03228 ABCC_MRP_Like The MRP 99.9 1.5E-24 3.2E-29 138.9 9.1 70 5-76 97-166 (171)
208 PRK15439 autoinducer 2 ABC tra 99.9 1.2E-24 2.7E-29 158.4 9.9 74 2-76 138-212 (510)
209 PRK14235 phosphate transporter 99.9 1.7E-24 3.7E-29 146.9 9.9 73 2-76 161-234 (267)
210 PRK14241 phosphate transporter 99.9 1.6E-24 3.5E-29 146.0 9.7 73 2-76 146-219 (258)
211 TIGR03522 GldA_ABC_ATP gliding 99.9 9.6E-25 2.1E-29 150.5 8.8 73 2-76 131-204 (301)
212 PRK10744 pstB phosphate transp 99.9 1.8E-24 4E-29 146.0 9.9 73 2-76 154-227 (260)
213 PRK13549 xylose transporter AT 99.9 1.2E-24 2.6E-29 158.1 9.6 74 2-76 141-215 (506)
214 PRK13538 cytochrome c biogenes 99.9 1.5E-24 3.2E-29 142.0 9.1 72 2-74 127-199 (204)
215 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.9E-24 4E-29 141.5 9.6 73 2-76 123-195 (207)
216 PRK14240 phosphate transporter 99.9 1.9E-24 4.1E-29 144.8 9.8 73 2-76 144-217 (250)
217 PRK14244 phosphate ABC transpo 99.9 1.7E-24 3.6E-29 145.3 9.5 73 2-76 147-220 (251)
218 cd03290 ABCC_SUR1_N The SUR do 99.9 2.1E-24 4.6E-29 142.2 9.8 74 2-76 138-213 (218)
219 PRK14253 phosphate ABC transpo 99.9 2.3E-24 4.9E-29 144.4 10.0 73 2-76 143-216 (249)
220 PRK14255 phosphate ABC transpo 99.9 2.3E-24 5E-29 144.5 10.0 72 2-75 146-218 (252)
221 PRK11174 cysteine/glutathione 99.9 1.5E-24 3.2E-29 159.4 9.8 73 2-76 483-555 (588)
222 PRK10982 galactose/methyl gala 99.9 1.5E-24 3.2E-29 157.0 9.7 74 2-76 132-206 (491)
223 PRK14243 phosphate transporter 99.9 2.1E-24 4.5E-29 146.3 9.8 73 2-76 149-222 (264)
224 PRK11288 araG L-arabinose tran 99.9 1.5E-24 3.2E-29 157.4 9.6 74 2-76 138-212 (501)
225 PRK13540 cytochrome c biogenes 99.9 1.6E-24 3.4E-29 141.5 8.7 75 2-77 125-199 (200)
226 PRK14269 phosphate ABC transpo 99.9 2.3E-24 4.9E-29 144.5 9.6 73 2-76 140-213 (246)
227 PRK14249 phosphate ABC transpo 99.9 2.9E-24 6.3E-29 144.1 10.0 73 2-76 145-218 (251)
228 PRK14272 phosphate ABC transpo 99.9 2.7E-24 5.8E-29 144.1 9.7 73 2-76 146-219 (252)
229 PRK14270 phosphate ABC transpo 99.9 3.2E-24 6.9E-29 144.0 10.0 73 2-76 145-218 (251)
230 PRK14265 phosphate ABC transpo 99.9 2.7E-24 5.9E-29 146.6 9.8 73 2-76 159-232 (274)
231 PRK14251 phosphate ABC transpo 99.9 2.5E-24 5.5E-29 144.3 9.5 73 2-76 145-218 (251)
232 PRK14256 phosphate ABC transpo 99.9 3E-24 6.6E-29 144.1 9.7 73 2-76 146-219 (252)
233 cd03231 ABC_CcmA_heme_exporter 99.9 2.7E-24 5.9E-29 140.6 9.2 73 2-75 123-196 (201)
234 PRK14274 phosphate ABC transpo 99.9 3E-24 6.6E-29 144.7 9.6 73 2-76 153-226 (259)
235 cd03244 ABCC_MRP_domain2 Domai 99.9 3.1E-24 6.8E-29 141.3 9.5 72 2-75 137-208 (221)
236 cd03234 ABCG_White The White s 99.9 3.4E-24 7.5E-29 142.0 9.7 74 2-76 141-216 (226)
237 PRK14238 phosphate transporter 99.9 3.7E-24 8E-29 145.6 9.9 73 2-76 165-238 (271)
238 PRK10938 putative molybdenum t 99.9 1.9E-24 4.1E-29 156.3 8.9 75 2-76 399-475 (490)
239 cd03213 ABCG_EPDR ABCG transpo 99.9 4E-24 8.7E-29 139.4 9.5 72 4-76 111-184 (194)
240 PRK14260 phosphate ABC transpo 99.9 3.7E-24 8.1E-29 144.4 9.6 73 2-76 148-221 (259)
241 PRK03695 vitamin B12-transport 99.9 4.4E-24 9.5E-29 143.6 9.9 73 2-75 124-204 (248)
242 cd03232 ABC_PDR_domain2 The pl 99.9 3.9E-24 8.4E-29 139.2 9.3 72 4-76 108-181 (192)
243 PRK14262 phosphate ABC transpo 99.9 3.9E-24 8.4E-29 143.3 9.6 73 2-76 144-217 (250)
244 PRK13547 hmuV hemin importer A 99.9 4.1E-24 8.8E-29 146.0 9.8 75 2-76 143-227 (272)
245 cd03250 ABCC_MRP_domain1 Domai 99.9 5.2E-24 1.1E-28 139.1 9.8 74 2-76 125-199 (204)
246 TIGR00968 3a0106s01 sulfate AB 99.9 4.8E-24 1E-28 142.4 9.8 74 2-75 128-202 (237)
247 PRK14254 phosphate ABC transpo 99.9 4.3E-24 9.3E-29 146.5 9.8 71 2-74 178-249 (285)
248 PRK13541 cytochrome c biogenes 99.9 2.4E-24 5.2E-29 140.2 7.9 72 2-74 121-192 (195)
249 PRK14275 phosphate ABC transpo 99.9 4.6E-24 1E-28 146.3 9.6 73 2-76 180-253 (286)
250 PRK14236 phosphate transporter 99.9 5.5E-24 1.2E-28 144.7 9.9 73 2-76 166-239 (272)
251 PRK14257 phosphate ABC transpo 99.9 6E-24 1.3E-28 148.6 9.7 73 2-76 223-296 (329)
252 PRK14263 phosphate ABC transpo 99.9 6.7E-24 1.4E-28 143.8 9.7 73 2-76 147-220 (261)
253 PRK14237 phosphate transporter 99.9 1.2E-23 2.5E-28 142.8 9.9 73 2-76 161-234 (267)
254 PRK13546 teichoic acids export 99.9 1.1E-23 2.4E-28 143.4 9.9 74 2-76 141-215 (264)
255 PRK14261 phosphate ABC transpo 99.9 1E-23 2.3E-28 141.6 9.5 73 2-76 147-220 (253)
256 PRK14271 phosphate ABC transpo 99.9 1.2E-23 2.5E-28 143.7 9.7 73 2-76 161-234 (276)
257 PRK11176 lipid transporter ATP 99.9 8.5E-24 1.8E-28 155.1 9.5 73 2-76 478-550 (582)
258 COG2274 SunT ABC-type bacterio 99.9 6.7E-24 1.5E-28 160.1 9.1 75 1-77 606-680 (709)
259 PRK14266 phosphate ABC transpo 99.9 1.6E-23 3.5E-28 140.3 9.8 72 2-75 144-216 (250)
260 TIGR02857 CydD thiol reductant 99.9 1.1E-23 2.3E-28 153.3 9.4 73 2-76 456-528 (529)
261 cd03233 ABC_PDR_domain1 The pl 99.9 1.6E-23 3.5E-28 137.3 9.4 75 2-76 116-192 (202)
262 COG4608 AppF ABC-type oligopep 99.9 5.9E-24 1.3E-28 145.4 7.5 78 1-78 106-184 (268)
263 PRK14264 phosphate ABC transpo 99.9 1.7E-23 3.7E-28 144.6 9.8 71 2-74 198-269 (305)
264 PRK13657 cyclic beta-1,2-gluca 99.9 1.4E-23 3E-28 154.5 9.8 73 2-76 469-541 (588)
265 TIGR02203 MsbA_lipidA lipid A 99.9 1.2E-23 2.5E-28 153.8 9.4 72 3-76 468-539 (571)
266 PRK14252 phosphate ABC transpo 99.9 2.2E-23 4.8E-28 141.1 10.0 73 2-76 159-232 (265)
267 cd03236 ABC_RNaseL_inhibitor_d 99.9 2E-23 4.3E-28 141.7 9.7 74 2-76 137-211 (255)
268 PRK10522 multidrug transporter 99.9 1.9E-23 4.2E-28 152.9 10.1 75 2-76 447-521 (547)
269 TIGR01189 ccmA heme ABC export 99.9 1.1E-23 2.4E-28 137.2 7.9 71 2-74 125-195 (198)
270 TIGR01842 type_I_sec_PrtD type 99.9 1.9E-23 4.1E-28 152.8 9.9 74 2-76 452-525 (544)
271 cd03288 ABCC_SUR2 The SUR doma 99.9 2.4E-23 5.2E-28 140.5 9.5 73 2-76 154-226 (257)
272 PRK13545 tagH teichoic acids e 99.9 2.3E-23 4.9E-28 153.3 10.0 74 2-76 141-215 (549)
273 PRK10790 putative multidrug tr 99.9 2.1E-23 4.5E-28 153.6 9.8 73 2-76 474-546 (592)
274 cd03271 ABC_UvrA_II The excisi 99.9 3.3E-23 7.1E-28 141.5 10.1 74 2-76 167-243 (261)
275 TIGR03375 type_I_sec_LssB type 99.9 2.3E-23 4.9E-28 155.8 10.0 73 2-76 599-671 (694)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 3.5E-23 7.7E-28 130.0 9.3 69 4-76 70-139 (144)
277 cd03289 ABCC_CFTR2 The CFTR su 99.9 2.9E-23 6.4E-28 142.3 9.6 72 3-76 137-208 (275)
278 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.2E-23 4.7E-28 156.1 9.6 71 2-76 613-683 (710)
279 TIGR01192 chvA glucan exporter 99.9 2.6E-23 5.6E-28 153.5 9.9 73 2-76 469-541 (585)
280 COG4988 CydD ABC-type transpor 99.9 2.5E-23 5.4E-28 153.0 9.5 73 2-76 454-526 (559)
281 PRK14246 phosphate ABC transpo 99.9 4E-23 8.8E-28 139.7 9.6 73 2-76 151-224 (257)
282 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 3E-23 6.5E-28 155.0 9.7 71 2-76 586-656 (686)
283 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1E-22 2.2E-27 128.5 10.0 70 5-75 81-151 (157)
284 TIGR01194 cyc_pep_trnsptr cycl 99.9 5.2E-23 1.1E-27 151.1 9.9 74 3-76 469-542 (555)
285 COG4148 ModC ABC-type molybdat 99.9 1.9E-23 4.1E-28 144.6 7.0 76 1-76 125-201 (352)
286 PRK10789 putative multidrug tr 99.9 4.5E-23 9.9E-28 151.7 9.5 73 2-76 449-521 (569)
287 PRK11160 cysteine/glutathione 99.9 4.9E-23 1.1E-27 151.7 9.5 73 2-76 473-545 (574)
288 PRK15064 ABC transporter ATP-b 99.9 4.8E-23 1E-27 150.4 9.2 72 1-76 435-507 (530)
289 COG0411 LivG ABC-type branched 99.9 6.5E-23 1.4E-27 138.7 9.1 75 2-76 147-222 (250)
290 PRK15064 ABC transporter ATP-b 99.9 5.3E-23 1.1E-27 150.2 9.2 71 2-76 153-224 (530)
291 COG4525 TauB ABC-type taurine 99.9 2.8E-23 6.2E-28 138.3 7.0 75 1-75 129-204 (259)
292 TIGR01193 bacteriocin_ABC ABC- 99.9 6.4E-23 1.4E-27 153.7 9.7 72 2-76 609-680 (708)
293 TIGR02204 MsbA_rel ABC transpo 99.9 6.2E-23 1.3E-27 150.3 9.4 73 2-76 474-546 (576)
294 PTZ00265 multidrug resistance 99.9 5.5E-23 1.2E-27 163.6 9.7 75 2-76 1356-1430(1466)
295 TIGR01846 type_I_sec_HlyB type 99.9 7.2E-23 1.6E-27 153.2 9.8 73 2-76 591-663 (694)
296 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.2E-22 2.6E-27 139.7 10.1 73 2-76 157-230 (282)
297 PRK13409 putative ATPase RIL; 99.9 7.2E-23 1.6E-27 152.0 9.7 73 2-76 210-283 (590)
298 COG4152 ABC-type uncharacteriz 99.9 3.2E-23 6.8E-28 141.3 6.9 73 2-75 128-201 (300)
299 PTZ00265 multidrug resistance 99.9 7E-23 1.5E-27 163.0 9.9 75 2-76 577-651 (1466)
300 COG0410 LivF ABC-type branched 99.9 1.5E-22 3.2E-27 136.1 10.0 74 2-75 134-208 (237)
301 COG4172 ABC-type uncharacteriz 99.9 4.8E-23 1E-27 148.0 8.1 76 1-76 154-230 (534)
302 PRK10636 putative ABC transpor 99.9 7.6E-23 1.6E-27 152.7 9.1 71 2-76 428-499 (638)
303 COG1132 MdlB ABC-type multidru 99.9 8.6E-23 1.9E-27 149.8 9.2 73 2-76 463-535 (567)
304 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 9.1E-23 2E-27 149.7 9.2 71 2-76 441-512 (552)
305 cd03278 ABC_SMC_barmotin Barmo 99.9 1.5E-22 3.3E-27 132.9 9.1 73 2-76 111-187 (197)
306 COG4161 ArtP ABC-type arginine 99.9 7.7E-23 1.7E-27 133.5 7.6 73 2-75 139-212 (242)
307 KOG0055|consensus 99.9 7.3E-23 1.6E-27 159.6 8.7 73 2-76 487-559 (1228)
308 COG4172 ABC-type uncharacteriz 99.9 7.4E-23 1.6E-27 147.0 8.0 76 1-76 423-499 (534)
309 PRK11819 putative ABC transpor 99.9 1E-22 2.2E-27 149.7 8.8 71 2-76 161-232 (556)
310 PRK10636 putative ABC transpor 99.9 1.2E-22 2.5E-27 151.7 8.9 71 2-76 147-218 (638)
311 PRK11147 ABC transporter ATPas 99.9 1.3E-22 2.8E-27 151.2 9.0 71 2-76 154-225 (635)
312 PRK15177 Vi polysaccharide exp 99.9 1.9E-22 4.1E-27 133.4 8.7 73 2-76 102-175 (213)
313 PRK11819 putative ABC transpor 99.9 2E-22 4.3E-27 148.2 9.3 71 2-76 443-514 (556)
314 TIGR01257 rim_protein retinal- 99.9 1.9E-22 4.2E-27 163.9 9.8 73 2-75 2068-2141(2272)
315 TIGR00958 3a01208 Conjugate Tr 99.9 2E-22 4.3E-27 151.5 9.1 71 2-76 615-685 (711)
316 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.9E-22 4.2E-27 148.0 8.8 71 2-76 159-230 (552)
317 COG1137 YhbG ABC-type (unclass 99.9 2.3E-22 4.9E-27 133.9 8.0 73 2-75 137-210 (243)
318 COG4987 CydC ABC-type transpor 99.9 1.8E-22 3.8E-27 147.9 8.2 73 2-76 472-544 (573)
319 TIGR02868 CydC thiol reductant 99.9 2.3E-22 5E-27 146.3 8.2 62 2-65 468-529 (529)
320 PRK11147 ABC transporter ATPas 99.9 3.1E-22 6.7E-27 149.1 8.9 71 2-76 438-509 (635)
321 PLN03211 ABC transporter G-25; 99.9 3E-22 6.6E-27 150.1 8.9 74 2-76 204-279 (659)
322 TIGR00954 3a01203 Peroxysomal 99.9 3.8E-22 8.2E-27 149.4 9.3 70 3-76 581-650 (659)
323 TIGR01257 rim_protein retinal- 99.9 3.6E-22 7.7E-27 162.4 9.8 73 2-76 1059-1132(2272)
324 cd03240 ABC_Rad50 The catalyti 99.9 6E-22 1.3E-26 130.5 9.0 75 2-76 113-194 (204)
325 cd03276 ABC_SMC6_euk Eukaryoti 99.9 5E-22 1.1E-26 130.5 7.9 74 1-74 106-185 (198)
326 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.4E-21 2.9E-26 129.0 9.9 73 2-75 121-204 (213)
327 PLN03073 ABC transporter F fam 99.9 8.4E-22 1.8E-26 148.9 9.7 71 2-76 625-696 (718)
328 KOG0058|consensus 99.9 5.2E-22 1.1E-26 148.8 7.7 73 2-76 602-674 (716)
329 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.8E-21 3.9E-26 131.0 9.5 72 2-75 164-239 (251)
330 PLN03073 ABC transporter F fam 99.9 1.1E-21 2.4E-26 148.3 9.3 71 2-76 342-413 (718)
331 PRK10535 macrolide transporter 99.9 1.6E-21 3.5E-26 145.7 10.0 74 2-76 142-215 (648)
332 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.4E-21 3E-26 131.5 8.2 73 3-76 154-230 (247)
333 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3E-21 6.5E-26 128.6 9.6 73 2-76 156-232 (243)
334 PLN03232 ABC transporter C fam 99.9 1.6E-21 3.4E-26 155.5 9.7 73 2-76 1369-1441(1495)
335 KOG0055|consensus 99.9 1.6E-21 3.4E-26 152.3 7.8 74 1-76 1123-1196(1228)
336 TIGR00630 uvra excinuclease AB 99.9 4.1E-21 8.8E-26 148.1 9.9 74 2-76 485-560 (924)
337 PLN03130 ABC transporter C fam 99.9 3.4E-21 7.5E-26 154.4 9.7 73 2-76 1372-1444(1622)
338 COG1129 MglA ABC-type sugar tr 99.8 4.9E-21 1.1E-25 139.9 9.4 74 2-76 143-217 (500)
339 PRK00349 uvrA excinuclease ABC 99.8 4.3E-21 9.2E-26 148.2 9.4 74 2-76 487-562 (943)
340 KOG0057|consensus 99.8 2.7E-21 5.9E-26 141.9 7.8 74 1-76 484-557 (591)
341 TIGR00957 MRP_assoc_pro multi 99.8 4.4E-21 9.6E-26 153.1 9.5 73 2-76 1419-1491(1522)
342 TIGR00955 3a01204 The Eye Pigm 99.8 5E-21 1.1E-25 142.4 8.8 72 3-75 165-238 (617)
343 PLN03232 ABC transporter C fam 99.8 5.5E-21 1.2E-25 152.4 9.4 73 2-76 738-811 (1495)
344 COG0488 Uup ATPase components 99.8 3.8E-21 8.2E-26 141.6 7.8 70 2-75 151-221 (530)
345 COG4619 ABC-type uncharacteriz 99.8 6.2E-21 1.4E-25 124.7 7.6 77 1-77 130-207 (223)
346 PLN03140 ABC transporter G fam 99.8 7.2E-21 1.6E-25 151.7 9.4 73 3-76 1018-1092(1470)
347 TIGR00956 3a01205 Pleiotropic 99.8 5.5E-21 1.2E-25 151.8 8.5 75 2-76 207-283 (1394)
348 TIGR01271 CFTR_protein cystic 99.8 9.1E-21 2E-25 151.2 9.7 73 2-76 546-619 (1490)
349 TIGR01271 CFTR_protein cystic 99.8 1.2E-20 2.6E-25 150.5 9.7 73 2-76 1351-1423(1490)
350 PTZ00243 ABC transporter; Prov 99.8 1.2E-20 2.5E-25 151.1 9.6 73 2-76 1443-1516(1560)
351 PLN03130 ABC transporter C fam 99.8 1.5E-20 3.3E-25 150.8 9.7 73 2-76 738-811 (1622)
352 TIGR00957 MRP_assoc_pro multi 99.8 1.3E-20 2.8E-25 150.5 9.2 75 2-76 758-833 (1522)
353 COG1129 MglA ABC-type sugar tr 99.8 1.1E-20 2.4E-25 138.0 8.1 74 2-76 399-473 (500)
354 COG1119 ModF ABC-type molybden 99.8 1.9E-20 4E-25 127.0 8.2 68 3-70 170-238 (257)
355 PRK00349 uvrA excinuclease ABC 99.8 3.4E-20 7.4E-25 143.3 10.0 74 2-76 828-904 (943)
356 COG4586 ABC-type uncharacteriz 99.8 1.9E-20 4.1E-25 129.2 7.7 75 1-75 153-228 (325)
357 cd03274 ABC_SMC4_euk Eukaryoti 99.8 3.8E-20 8.3E-25 122.7 9.0 73 2-76 125-201 (212)
358 COG4604 CeuD ABC-type enteroch 99.8 7.9E-21 1.7E-25 126.6 5.6 73 3-75 134-207 (252)
359 TIGR00956 3a01205 Pleiotropic 99.8 2.4E-20 5.2E-25 148.2 9.2 71 4-75 901-974 (1394)
360 cd03239 ABC_SMC_head The struc 99.8 7.3E-20 1.6E-24 118.7 9.9 72 4-76 94-169 (178)
361 PTZ00243 ABC transporter; Prov 99.8 3.4E-20 7.4E-25 148.4 10.0 74 2-76 780-853 (1560)
362 COG4107 PhnK ABC-type phosphon 99.8 5.9E-20 1.3E-24 121.2 8.6 74 2-75 149-223 (258)
363 COG3845 ABC-type uncharacteriz 99.8 6E-20 1.3E-24 133.4 8.7 72 2-74 138-210 (501)
364 TIGR00630 uvra excinuclease AB 99.8 9.1E-20 2E-24 140.7 10.0 74 2-76 826-902 (924)
365 PRK00635 excinuclease ABC subu 99.8 7.8E-20 1.7E-24 147.1 9.7 74 2-76 474-549 (1809)
366 PRK00635 excinuclease ABC subu 99.8 9.9E-20 2.1E-24 146.5 10.0 74 2-76 807-883 (1809)
367 PLN03140 ABC transporter G fam 99.8 4.8E-20 1E-24 147.0 6.2 75 2-76 334-410 (1470)
368 COG0488 Uup ATPase components 99.8 1.9E-19 4.2E-24 132.6 8.5 70 2-75 437-507 (530)
369 cd03227 ABC_Class2 ABC-type Cl 99.8 5E-19 1.1E-23 112.7 9.2 71 4-75 77-151 (162)
370 KOG0059|consensus 99.8 3.2E-19 7E-24 137.2 8.0 72 2-74 696-768 (885)
371 COG4559 ABC-type hemin transpo 99.8 4.9E-19 1.1E-23 118.9 7.8 73 3-76 134-213 (259)
372 cd03277 ABC_SMC5_euk Eukaryoti 99.8 4.1E-19 8.9E-24 117.9 7.0 72 2-73 124-201 (213)
373 COG4618 ArpD ABC-type protease 99.8 7.9E-19 1.7E-23 128.5 9.1 74 2-76 470-543 (580)
374 KOG0062|consensus 99.8 2.9E-19 6.2E-24 130.8 6.2 65 2-70 196-260 (582)
375 cd03241 ABC_RecN RecN ATPase i 99.8 2E-18 4.3E-23 117.9 9.0 70 4-75 170-243 (276)
376 COG4136 ABC-type uncharacteriz 99.8 4.6E-19 9.9E-24 114.6 4.6 75 2-76 132-206 (213)
377 COG1101 PhnK ABC-type uncharac 99.8 2.2E-18 4.8E-23 116.0 7.5 74 2-75 146-220 (263)
378 TIGR00634 recN DNA repair prot 99.8 4.5E-18 9.7E-23 125.7 9.1 71 3-75 439-513 (563)
379 PHA02562 46 endonuclease subun 99.8 2.6E-18 5.7E-23 125.5 7.5 72 2-76 466-548 (562)
380 KOG0061|consensus 99.8 2.6E-18 5.6E-23 128.3 7.5 72 3-75 169-242 (613)
381 TIGR00618 sbcc exonuclease Sbc 99.7 7.7E-18 1.7E-22 131.0 9.8 73 2-75 948-1031(1042)
382 PRK10869 recombination and rep 99.7 1.7E-17 3.8E-22 122.7 9.4 70 4-75 430-503 (553)
383 PRK03918 chromosome segregatio 99.7 2.1E-17 4.7E-22 125.8 9.3 74 2-76 786-865 (880)
384 KOG0054|consensus 99.7 1.4E-17 3E-22 132.0 8.3 75 1-76 640-714 (1381)
385 COG4778 PhnL ABC-type phosphon 99.7 7.7E-18 1.7E-22 110.6 5.7 74 2-76 150-224 (235)
386 COG4674 Uncharacterized ABC-ty 99.7 1.1E-17 2.4E-22 111.5 6.1 70 3-74 146-216 (249)
387 COG5265 ATM1 ABC-type transpor 99.7 8.8E-18 1.9E-22 121.1 5.7 72 3-76 398-469 (497)
388 PRK01156 chromosome segregatio 99.7 4.8E-17 1E-21 124.7 9.8 75 2-76 799-881 (895)
389 TIGR00606 rad50 rad50. This fa 99.7 4.3E-17 9.3E-22 129.1 9.3 69 2-70 1197-1275(1311)
390 TIGR02168 SMC_prok_B chromosom 99.7 2.7E-17 5.9E-22 126.3 7.9 72 2-75 1087-1162(1179)
391 COG4133 CcmA ABC-type transpor 99.7 5.2E-17 1.1E-21 107.1 7.3 66 2-68 128-193 (209)
392 PRK10246 exonuclease subunit S 99.7 9.4E-17 2E-21 125.3 9.8 70 1-71 946-1023(1047)
393 KOG0927|consensus 99.7 7.1E-17 1.5E-21 118.9 7.6 71 2-75 219-290 (614)
394 COG1245 Predicted ATPase, RNas 99.7 7.9E-17 1.7E-21 117.4 7.7 75 1-75 452-527 (591)
395 cd03280 ABC_MutS2 MutS2 homolo 99.7 1.2E-16 2.6E-21 104.6 7.8 72 2-75 89-161 (200)
396 KOG0056|consensus 99.7 3.2E-17 7E-22 120.7 4.8 73 2-76 672-744 (790)
397 KOG0062|consensus 99.7 1.4E-16 3E-21 116.9 7.3 69 3-75 481-550 (582)
398 COG4167 SapF ABC-type antimicr 99.7 2.8E-16 6.2E-21 104.4 7.2 76 1-76 146-222 (267)
399 COG0396 sufC Cysteine desulfur 99.7 4.9E-16 1.1E-20 105.0 8.4 70 4-74 144-215 (251)
400 COG1134 TagH ABC-type polysacc 99.7 7.2E-16 1.6E-20 104.6 8.6 74 1-75 144-218 (249)
401 KOG0927|consensus 99.6 1.6E-16 3.5E-21 117.0 5.1 69 2-74 507-576 (614)
402 KOG0054|consensus 99.6 7.1E-16 1.5E-20 122.4 8.3 73 2-76 1273-1345(1381)
403 TIGR02169 SMC_prok_A chromosom 99.6 6.7E-16 1.5E-20 119.2 7.7 72 2-75 1072-1147(1164)
404 COG4170 SapD ABC-type antimicr 99.6 1.6E-16 3.5E-21 107.6 3.7 77 2-78 156-233 (330)
405 COG1245 Predicted ATPase, RNas 99.6 1.1E-15 2.4E-20 111.5 8.0 72 2-74 211-283 (591)
406 COG0178 UvrA Excinuclease ATPa 99.6 1E-15 2.3E-20 116.7 7.4 73 3-76 821-896 (935)
407 COG4178 ABC-type uncharacteriz 99.6 2E-15 4.3E-20 112.6 7.6 66 3-70 514-579 (604)
408 PRK02224 chromosome segregatio 99.6 3.3E-15 7.1E-20 114.2 8.6 75 2-76 779-865 (880)
409 KOG0066|consensus 99.5 9.8E-15 2.1E-19 107.0 5.4 65 2-70 702-766 (807)
410 cd03243 ABC_MutS_homologs The 99.5 6E-14 1.3E-18 91.8 7.8 69 3-73 90-159 (202)
411 COG3845 ABC-type uncharacteriz 99.5 3.1E-14 6.8E-19 103.9 6.9 75 2-77 401-476 (501)
412 cd03285 ABC_MSH2_euk MutS2 hom 99.5 7.5E-14 1.6E-18 93.3 7.8 70 3-74 88-162 (222)
413 cd03242 ABC_RecF RecF is a rec 99.5 3.8E-14 8.3E-19 96.6 6.5 62 4-70 183-253 (270)
414 smart00534 MUTSac ATPase domai 99.5 8.2E-14 1.8E-18 90.4 7.6 69 3-72 60-129 (185)
415 PF00005 ABC_tran: ABC transpo 99.5 1.9E-14 4.1E-19 88.2 4.1 31 3-33 107-137 (137)
416 KOG0065|consensus 99.5 1.4E-14 3E-19 114.4 2.9 72 3-75 928-1002(1391)
417 COG4138 BtuD ABC-type cobalami 99.5 9.5E-15 2.1E-19 96.5 1.3 73 2-75 123-203 (248)
418 TIGR00611 recf recF protein. A 99.4 2.8E-13 6.1E-18 96.2 6.9 62 4-69 275-345 (365)
419 COG0419 SbcC ATPase involved i 99.4 7.8E-13 1.7E-17 102.2 9.3 73 2-75 813-893 (908)
420 COG0178 UvrA Excinuclease ATPa 99.4 6.4E-13 1.4E-17 101.7 8.6 73 3-76 480-554 (935)
421 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.3E-12 2.8E-17 85.9 8.8 70 4-75 136-209 (220)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.4 1.6E-12 3.4E-17 86.1 7.6 66 3-70 90-156 (204)
423 KOG0066|consensus 99.4 8.9E-14 1.9E-18 102.1 1.7 64 3-70 411-474 (807)
424 PRK00064 recF recombination pr 99.4 1.3E-12 2.9E-17 92.5 7.4 64 3-70 272-344 (361)
425 COG4615 PvdE ABC-type sideroph 99.4 1.5E-12 3.2E-17 94.2 6.4 74 3-76 447-520 (546)
426 TIGR02680 conserved hypothetic 99.4 2.3E-12 5E-17 103.0 7.6 60 2-65 1245-1316(1353)
427 PRK00409 recombination and DNA 99.3 3.2E-12 7E-17 98.0 7.6 67 2-70 388-455 (782)
428 PF13304 AAA_21: AAA domain; P 99.3 8.5E-12 1.8E-16 79.7 8.2 65 3-68 235-302 (303)
429 KOG2355|consensus 99.3 3E-12 6.6E-17 86.5 4.3 67 3-69 146-212 (291)
430 KOG0060|consensus 99.3 1.4E-11 3E-16 91.9 7.8 63 4-70 570-632 (659)
431 cd03283 ABC_MutS-like MutS-lik 99.3 3.4E-11 7.4E-16 79.3 8.8 62 9-71 90-154 (199)
432 cd03281 ABC_MSH5_euk MutS5 hom 99.2 6E-11 1.3E-15 78.8 8.4 63 8-70 94-159 (213)
433 TIGR01069 mutS2 MutS2 family p 99.2 4.8E-11 1E-15 91.5 7.6 66 2-69 383-449 (771)
434 COG2401 ABC-type ATPase fused 99.2 5.7E-11 1.2E-15 86.6 6.5 73 2-74 505-579 (593)
435 KOG0063|consensus 99.1 5.6E-11 1.2E-15 86.8 4.7 75 2-76 454-529 (592)
436 cd03284 ABC_MutS1 MutS1 homolo 99.1 4.5E-10 9.8E-15 74.7 7.2 68 4-73 85-161 (216)
437 cd01124 KaiC KaiC is a circadi 99.0 6.2E-10 1.4E-14 71.0 5.7 65 2-67 69-142 (187)
438 PRK14079 recF recombination pr 99.0 4.7E-10 1E-14 79.3 5.6 46 4-49 263-317 (349)
439 PF13558 SbcCD_C: Putative exo 99.0 9.4E-10 2E-14 64.5 6.0 47 3-49 31-90 (90)
440 KOG0064|consensus 99.0 3.1E-10 6.7E-15 84.6 4.3 62 4-69 612-673 (728)
441 KOG0063|consensus 99.0 8.3E-10 1.8E-14 80.8 5.8 68 2-70 211-278 (592)
442 PTZ00132 GTP-binding nuclear p 99.0 1.3E-09 2.8E-14 71.4 5.3 43 9-51 157-204 (215)
443 KOG0065|consensus 98.9 5.2E-10 1.1E-14 89.1 3.1 76 1-76 257-334 (1391)
444 cd03286 ABC_MSH6_euk MutS6 hom 98.9 1.6E-08 3.6E-13 67.6 7.9 61 10-70 97-158 (218)
445 PF13175 AAA_15: AAA ATPase do 98.8 2.9E-08 6.3E-13 69.6 7.4 66 2-67 339-414 (415)
446 PRK13695 putative NTPase; Prov 98.8 2.8E-08 6.2E-13 63.5 6.2 68 4-76 78-147 (174)
447 cd03287 ABC_MSH3_euk MutS3 hom 98.7 1.1E-07 2.4E-12 63.8 8.3 62 9-70 97-159 (222)
448 COG1196 Smc Chromosome segrega 98.7 4E-08 8.7E-13 78.1 6.7 72 2-75 1064-1139(1163)
449 TIGR03185 DNA_S_dndD DNA sulfu 98.5 4.6E-07 1E-11 68.4 8.0 63 2-69 549-618 (650)
450 KOG0964|consensus 98.5 8.1E-08 1.8E-12 75.1 3.9 71 3-75 1096-1170(1200)
451 PRK13891 conjugal transfer pro 98.5 6.5E-07 1.4E-11 69.6 7.5 55 15-70 680-735 (852)
452 PRK13830 conjugal transfer pro 98.5 7.5E-07 1.6E-11 69.0 7.5 51 18-69 648-699 (818)
453 PF13166 AAA_13: AAA domain 98.4 2.7E-06 5.8E-11 64.3 9.3 68 3-70 499-576 (712)
454 COG4637 Predicted ATPase [Gene 98.4 2.5E-06 5.5E-11 60.6 7.7 67 2-70 268-336 (373)
455 COG3910 Predicted ATPase [Gene 98.3 2.9E-06 6.3E-11 56.8 7.1 63 5-69 130-192 (233)
456 cd01125 repA Hexameric Replica 98.3 6.6E-07 1.4E-11 59.8 3.0 48 18-66 107-160 (239)
457 PRK08533 flagellar accessory p 98.3 4.3E-06 9.3E-11 56.1 6.9 61 5-67 96-164 (230)
458 cd01128 rho_factor Transcripti 98.2 5.3E-07 1.2E-11 61.5 2.0 69 2-75 127-204 (249)
459 COG0497 RecN ATPase involved i 98.2 9.1E-06 2E-10 60.9 8.5 70 4-75 431-504 (557)
460 PRK06067 flagellar accessory p 98.2 1.7E-05 3.7E-10 52.8 7.7 61 5-66 101-166 (234)
461 TIGR02858 spore_III_AA stage I 98.1 1.8E-05 3.8E-10 54.7 7.5 45 15-67 187-231 (270)
462 cd01120 RecA-like_NTPases RecA 98.1 2.6E-05 5.5E-10 47.7 7.2 61 6-67 69-139 (165)
463 KOG0962|consensus 98.1 1.1E-05 2.3E-10 65.0 6.2 68 3-70 1182-1259(1294)
464 PRK05399 DNA mismatch repair p 98.1 2.7E-05 5.9E-10 60.8 8.3 67 4-72 666-737 (854)
465 KOG0933|consensus 98.1 3E-06 6.5E-11 66.7 3.0 70 3-74 1081-1154(1174)
466 PRK13873 conjugal transfer ATP 98.0 1.9E-05 4.2E-10 61.1 6.9 51 18-69 631-682 (811)
467 PRK13898 type IV secretion sys 97.8 7.7E-05 1.7E-09 57.7 7.4 52 18-70 638-690 (800)
468 KOG0996|consensus 97.8 1.8E-05 4E-10 63.1 3.7 72 1-74 1192-1267(1293)
469 PF00488 MutS_V: MutS domain V 97.7 0.00046 1E-08 46.6 8.7 67 4-70 102-171 (235)
470 PRK08699 DNA polymerase III su 97.5 0.00017 3.6E-09 50.9 4.4 42 26-69 116-157 (325)
471 cd01131 PilT Pilus retraction 97.5 0.0004 8.6E-09 45.5 5.7 54 14-75 66-119 (198)
472 KOG0018|consensus 97.3 0.00039 8.4E-09 55.4 4.8 68 3-74 1050-1121(1141)
473 PF13514 AAA_27: AAA domain 97.2 0.0015 3.3E-08 52.2 6.9 66 2-69 1023-1096(1111)
474 COG4694 Uncharacterized protei 97.2 0.0016 3.4E-08 49.6 6.5 65 4-69 529-601 (758)
475 TIGR01070 mutS1 DNA mismatch r 97.1 0.0037 8.1E-08 49.1 8.6 66 5-70 652-720 (840)
476 PRK06793 fliI flagellum-specif 97.1 0.00094 2E-08 49.0 4.9 68 2-72 219-293 (432)
477 smart00382 AAA ATPases associa 97.0 0.021 4.6E-07 33.0 8.9 61 4-64 60-125 (148)
478 TIGR02655 circ_KaiC circadian 96.9 0.00017 3.7E-09 53.1 -0.4 53 4-67 115-169 (484)
479 TIGR02788 VirB11 P-type DNA tr 96.8 0.0037 8E-08 43.6 5.2 55 12-74 208-262 (308)
480 COG1195 RecF Recombinational D 96.6 0.0052 1.1E-07 44.3 5.2 61 4-69 275-344 (363)
481 TIGR01420 pilT_fam pilus retra 96.6 0.005 1.1E-07 43.5 5.1 54 13-74 186-239 (343)
482 TIGR00152 dephospho-CoA kinase 96.6 0.00075 1.6E-08 43.5 0.6 66 7-75 60-128 (188)
483 PRK04863 mukB cell division pr 96.3 0.0034 7.5E-08 51.9 3.1 56 2-62 1363-1435(1486)
484 PRK14088 dnaA chromosomal repl 96.3 0.011 2.4E-07 43.3 5.2 49 21-70 193-243 (440)
485 COG4913 Uncharacterized protei 96.2 0.017 3.6E-07 45.4 6.2 58 3-64 989-1059(1104)
486 PRK07721 fliI flagellum-specif 96.0 0.019 4E-07 42.3 5.4 45 30-75 273-325 (438)
487 COG3593 Predicted ATP-dependen 95.6 0.018 3.8E-07 43.9 4.0 47 23-71 302-348 (581)
488 PF09818 ABC_ATPase: Predicted 95.6 0.057 1.2E-06 40.0 6.4 72 4-75 322-409 (448)
489 PRK06893 DNA replication initi 95.6 0.04 8.6E-07 36.8 5.2 45 20-65 89-134 (229)
490 cd00009 AAA The AAA+ (ATPases 95.5 0.07 1.5E-06 31.2 5.6 54 12-66 74-131 (151)
491 COG1106 Predicted ATPases [Gen 95.3 0.088 1.9E-06 38.2 6.6 66 4-69 251-317 (371)
492 cd01122 GP4d_helicase GP4d_hel 95.3 0.039 8.5E-07 37.1 4.5 55 11-65 127-191 (271)
493 PTZ00454 26S protease regulato 95.3 0.13 2.8E-06 37.4 7.4 55 14-68 230-297 (398)
494 KOG0250|consensus 95.3 0.014 3.1E-07 46.9 2.6 73 2-74 987-1064(1074)
495 COG4938 Uncharacterized conser 95.1 0.05 1.1E-06 38.8 4.7 53 15-68 253-305 (374)
496 TIGR03880 KaiC_arch_3 KaiC dom 95.0 0.079 1.7E-06 34.8 5.3 43 21-64 106-153 (224)
497 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.094 2E-06 33.8 4.7 61 13-75 84-150 (159)
498 TIGR00929 VirB4_CagE type IV s 94.1 0.17 3.7E-06 39.0 5.8 49 20-69 627-676 (785)
499 PRK04296 thymidine kinase; Pro 93.7 0.28 6E-06 31.9 5.6 39 21-64 77-115 (190)
500 PF13481 AAA_25: AAA domain; P 93.6 0.19 4.2E-06 31.9 4.6 51 15-65 132-189 (193)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=4.7e-31 Score=176.31 Aligned_cols=75 Identities=37% Similarity=0.559 Sum_probs=70.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+|.+|||||||||+|||||+.+|+++|+|||||+|||....++.+.+++++++ |.|.++|||++.+++. +||++.
T Consensus 133 yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviF 208 (240)
T COG1126 133 YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIF 208 (240)
T ss_pred CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEE
Confidence 47899999999999999999999999999999999999999999999999765 8999999999999987 898864
No 2
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2.1e-30 Score=173.90 Aligned_cols=77 Identities=35% Similarity=0.517 Sum_probs=73.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceecC
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDN 77 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~~ 77 (79)
+|.+|||||||||+|||||+.+|++++.||||++||..+.+++++++.+++++.|.|+|+||||...+..+|+++.-
T Consensus 139 ~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l 215 (226)
T COG1136 139 KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIEL 215 (226)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEE
Confidence 37899999999999999999999999999999999999999999999999888899999999999999999998764
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.1e-29 Score=169.68 Aligned_cols=76 Identities=36% Similarity=0.543 Sum_probs=71.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.|.+|||||||||+|||||+.+|++++|||||++||..++..+.+.+.+++++.+.||++||||.+++-. +|+|+.
T Consensus 127 ~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivv 203 (248)
T COG1116 127 YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV 203 (248)
T ss_pred CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEE
Confidence 4789999999999999999999999999999999999999999999999999889999999999999976 888764
No 4
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.8e-28 Score=166.73 Aligned_cols=73 Identities=37% Similarity=0.543 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
.++|||||+|||.|||||+++|++++|||||+|+|+.++..+.++|.++.++ |+||++||||+..+.. +|+++
T Consensus 137 i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi 210 (254)
T COG1121 137 IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVI 210 (254)
T ss_pred ccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEE
Confidence 5789999999999999999999999999999999999999999999999776 9999999999999876 88865
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=171.39 Aligned_cols=75 Identities=33% Similarity=0.512 Sum_probs=71.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+|.+|||||||||+|||||+.+|+++|+|||||+|||.+.+.+++.|++++++.|.||+++||.|+.++. ||++.
T Consensus 138 yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 138 YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhhe
Confidence 4789999999999999999999999999999999999999999999999999999999999999999987 88864
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=2.1e-28 Score=165.51 Aligned_cols=77 Identities=35% Similarity=0.471 Sum_probs=72.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN 77 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~ 77 (79)
+|++|||||+||++||||++.+|+++++||||+||||.+...+-++++++.+..|.|+++||||++.+.. +|+++.-
T Consensus 142 ~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 142 YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEE
Confidence 5889999999999999999999999999999999999999999999999988889999999999999876 7987653
No 7
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.9e-28 Score=162.55 Aligned_cols=76 Identities=30% Similarity=0.491 Sum_probs=71.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+|.+|||||+||+||||||+.+|++||+||||++||...+.+++++|.++.++.+.|+|++|||+..+.. |||++.
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAV 214 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheee
Confidence 4778999999999999999999999999999999999999999999999998889999999999999987 898653
No 8
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.9e-28 Score=163.23 Aligned_cols=76 Identities=39% Similarity=0.621 Sum_probs=71.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.+.+|||||||||+||.+|+.+|+++||||||+|||+..++.+++.+.++..+.|.|+|++|||++++.. +|+++.
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~v 211 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV 211 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999987778999999999999987 888764
No 9
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.3e-27 Score=154.40 Aligned_cols=75 Identities=37% Similarity=0.513 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 128 ~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~ 203 (213)
T cd03259 128 PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAV 203 (213)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEE
Confidence 568999999999999999999999999999999999999999999999866558999999999998765 787653
No 10
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=4.2e-27 Score=154.71 Aligned_cols=75 Identities=33% Similarity=0.521 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++..+|+++.
T Consensus 138 ~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~ 212 (218)
T cd03255 138 PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIE 212 (218)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEE
Confidence 568999999999999999999999999999999999999999999999866458999999999998877888754
No 11
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=6e-27 Score=153.96 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+++++.. +|+++.
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~ 210 (216)
T TIGR00960 136 PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLT 210 (216)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999988654 8999999999999875 788754
No 12
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=6e-27 Score=154.25 Aligned_cols=75 Identities=28% Similarity=0.522 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.+.++.++.|.|+|++||+++++..+|+++.
T Consensus 139 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~ 213 (221)
T TIGR02211 139 PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLE 213 (221)
T ss_pred hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEE
Confidence 568999999999999999999999999999999999999999999999876558999999999999877887653
No 13
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=7.1e-27 Score=153.00 Aligned_cols=74 Identities=39% Similarity=0.630 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+++++.. +|+++.
T Consensus 132 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~ 206 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIV 206 (211)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998665 8999999999999987 888764
No 14
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=2.9e-27 Score=161.64 Aligned_cols=76 Identities=36% Similarity=0.560 Sum_probs=71.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.|.+|||||+|||.+||||+.+|+++|+||||++|||.++.++.+.+.++.++.|+|||+||||++++-. +|++..
T Consensus 132 yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~v 208 (309)
T COG1125 132 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAV 208 (309)
T ss_pred CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEE
Confidence 3789999999999999999999999999999999999999999999999998889999999999999976 888753
No 15
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.5e-27 Score=164.08 Aligned_cols=79 Identities=30% Similarity=0.471 Sum_probs=73.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecCCC
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDNYD 79 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~~~ 79 (79)
.|.+|||||+|||.||.||+.+|+++|.||||++||...+.+++++|+++.++.|.++|++|||+..+.. +|++..-|+
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa 229 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA 229 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC
Confidence 3789999999999999999999999999999999999999999999999988889999999999999876 899876653
No 16
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.7e-27 Score=155.86 Aligned_cols=75 Identities=36% Similarity=0.519 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 134 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~ 209 (235)
T cd03261 134 PAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAV 209 (235)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEE
Confidence 568999999999999999999999999999999999999999999999865458999999999998875 888753
No 17
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=4.8e-27 Score=162.11 Aligned_cols=75 Identities=48% Similarity=0.824 Sum_probs=70.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+++||+|||||++||+||+.+|+++||||||+||||.++..++++|+++++++|.||+++||.++++.. ||+++.
T Consensus 134 ~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~i 209 (293)
T COG1131 134 VRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVII 209 (293)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999987756899999999999987 887653
No 18
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=9.5e-27 Score=153.54 Aligned_cols=75 Identities=39% Similarity=0.581 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 129 ~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 204 (220)
T cd03293 129 PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV 204 (220)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999866558999999999998765 787653
No 19
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.94 E-value=1.2e-26 Score=152.34 Aligned_cols=74 Identities=36% Similarity=0.564 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++++ .|.|+|++||+++++.. +|+++.
T Consensus 130 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 130 IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEE
Confidence 578999999999999999999999999999999999999999999999865 58999999999999876 788753
No 20
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.94 E-value=7.2e-27 Score=164.31 Aligned_cols=76 Identities=32% Similarity=0.472 Sum_probs=70.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.+.+|||||||||+|||||+.+|+++|+||||++||+.++..+++.|++++++.|.|||++||+++.+.. ||+++.
T Consensus 137 ~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~v 213 (343)
T TIGR02314 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAV 213 (343)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999977668999999999999976 888753
No 21
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-26 Score=154.40 Aligned_cols=75 Identities=35% Similarity=0.602 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~ 217 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVG 217 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876558999999999999884 788653
No 22
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=1.6e-26 Score=152.53 Aligned_cols=75 Identities=32% Similarity=0.440 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 218 (228)
T cd03257 143 PHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAV 218 (228)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence 578999999999999999999999999999999999999999999999876557899999999999875 888754
No 23
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.2e-26 Score=161.85 Aligned_cols=76 Identities=30% Similarity=0.484 Sum_probs=70.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN 77 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~ 77 (79)
+.+|||||+||++|||||+.+|+++|+||||+|||+..+.++++.|.++.++.|.|+|++|||++.+.. +|+++.-
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm 227 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVM 227 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 678999999999999999999999999999999999999999999999976668999999999999865 8987654
No 24
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.94 E-value=1.5e-26 Score=154.02 Aligned_cols=75 Identities=35% Similarity=0.484 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.+++++.|.|||++||+++++.. +|+++.
T Consensus 112 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~ 187 (230)
T TIGR01184 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVM 187 (230)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 568999999999999999999999999999999999999999999999876558999999999998875 787653
No 25
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=1.8e-26 Score=150.84 Aligned_cols=74 Identities=32% Similarity=0.476 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus 124 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~ 198 (205)
T cd03226 124 PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLL 198 (205)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998654 8999999999999875 888753
No 26
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=1.8e-26 Score=151.35 Aligned_cols=74 Identities=39% Similarity=0.570 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~ 209 (214)
T TIGR02673 135 PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVII 209 (214)
T ss_pred hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEE
Confidence 568999999999999999999999999999999999999999999999865 48899999999999886 788753
No 27
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=1.9e-26 Score=151.16 Aligned_cols=74 Identities=28% Similarity=0.452 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++
T Consensus 128 ~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~ 202 (213)
T cd03301 128 PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIA 202 (213)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE
Confidence 578999999999999999999999999999999999999999999999876558999999999998876 78764
No 28
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=153.35 Aligned_cols=74 Identities=27% Similarity=0.459 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++..+|+++
T Consensus 143 ~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~ 216 (233)
T PRK11629 143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216 (233)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEE
Confidence 56899999999999999999999999999999999999999999999986555899999999999988777654
No 29
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=1.5e-26 Score=157.70 Aligned_cols=74 Identities=28% Similarity=0.420 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
..+||||||||+.|||||+++|++++|||||+.||...+-++++.+++++++.|.|+|++.||++.+.+ ||+++
T Consensus 136 ~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i 210 (258)
T COG1120 136 VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLI 210 (258)
T ss_pred ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 468999999999999999999999999999999999999999999999988889999999999999876 78765
No 30
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=161.09 Aligned_cols=75 Identities=28% Similarity=0.493 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++|+||||+|||+..+.++.+.|.++.++.|.|+|+||||+.++.. +|+++.
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999876568999999999999976 888754
No 31
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=2.5e-26 Score=152.09 Aligned_cols=75 Identities=28% Similarity=0.435 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.+++++.|.|||++||+++++..+|+++.
T Consensus 144 ~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~ 218 (228)
T PRK10584 144 PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLR 218 (228)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999866558899999999998877888653
No 32
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=2.4e-26 Score=153.17 Aligned_cols=75 Identities=35% Similarity=0.578 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~ 218 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVG 218 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence 578999999999999999999999999999999999999999999999866558999999999999865 787653
No 33
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.8e-26 Score=150.37 Aligned_cols=75 Identities=32% Similarity=0.553 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus 126 ~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 201 (211)
T cd03298 126 PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVF 201 (211)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEE
Confidence 568999999999999999999999999999999999999999999999876558999999999999876 888653
No 34
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.7e-26 Score=150.83 Aligned_cols=75 Identities=40% Similarity=0.552 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.+++++.|.|+|++||+++++.. +|+++.
T Consensus 129 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 204 (214)
T cd03297 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVV 204 (214)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEE
Confidence 578999999999999999999999999999999999999999999999876558899999999999865 787653
No 35
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=2.2e-26 Score=161.03 Aligned_cols=77 Identities=26% Similarity=0.427 Sum_probs=70.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN 77 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~ 77 (79)
.+.+|||||+||++|||||+.+|+++|+||||+|||+.++.++++.|.++.++.|.|+|++|||++++.. +|+++.-
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3678999999999999999999999999999999999999999999999876668999999999999976 8887653
No 36
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.5e-26 Score=153.26 Aligned_cols=75 Identities=33% Similarity=0.487 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.+.+++++.|.|||++||+++++.. +|+++.
T Consensus 134 ~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~ 209 (239)
T cd03296 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVV 209 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999876558999999999998765 788653
No 37
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=2.3e-26 Score=158.54 Aligned_cols=74 Identities=38% Similarity=0.753 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||+||+.+|+++||||||+|||+.+++.+++.+.++.++ |.|||++||+++++.. ||+++.
T Consensus 122 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~ 196 (302)
T TIGR01188 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAI 196 (302)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999999876 888653
No 38
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.7e-26 Score=160.28 Aligned_cols=77 Identities=23% Similarity=0.425 Sum_probs=71.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN 77 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~ 77 (79)
.+.+|||||+||++|||||+.+|++||+||||++||+..+.++++.|.++.++.|.|+|++|||+..+.. +|+++.-
T Consensus 151 ~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm 228 (327)
T PRK11308 151 YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM 228 (327)
T ss_pred CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3679999999999999999999999999999999999999999999999877668999999999999976 8887653
No 39
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.4e-26 Score=156.88 Aligned_cols=75 Identities=39% Similarity=0.651 Sum_probs=69.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.+++++.|.|||++||+++++.. +|+++.
T Consensus 142 ~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~ 217 (287)
T PRK13637 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIV 217 (287)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876568999999999999865 888754
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.2e-26 Score=151.05 Aligned_cols=75 Identities=40% Similarity=0.727 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 129 ~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~ 204 (220)
T cd03265 129 VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAI 204 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999876557899999999999876 787653
No 41
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=2.6e-26 Score=158.93 Aligned_cols=73 Identities=40% Similarity=0.750 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+++||+|||||++||+||+++|++++|||||+|||+.++..+++++.++.+ .|.|||++||+++++.. ||+++
T Consensus 136 ~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~ 209 (306)
T PRK13537 136 VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLC 209 (306)
T ss_pred hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEE
Confidence 568999999999999999999999999999999999999999999999854 48999999999999976 88865
No 42
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.8e-26 Score=154.50 Aligned_cols=71 Identities=34% Similarity=0.580 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
...||||||||+||||||+.+|++||||||||+|||.+..++-+++.++.+ ..|||+|||+|+-+.+ +|+.
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~t 218 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYT 218 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhh
Confidence 457999999999999999999999999999999999999999999999853 6899999999998876 5654
No 43
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=3.4e-26 Score=152.37 Aligned_cols=75 Identities=39% Similarity=0.649 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++..+|+++.
T Consensus 130 ~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~ 204 (236)
T TIGR03864 130 VRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVV 204 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEE
Confidence 568999999999999999999999999999999999999999999999865458999999999999877888654
No 44
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=3.6e-26 Score=159.78 Aligned_cols=76 Identities=30% Similarity=0.450 Sum_probs=70.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN 77 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~ 77 (79)
+.+|||||+||++|||||+.+|+++|+||||+|||+.++..+++.|.++.++.|.|+|++|||+..+.. +|+++.-
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm 235 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 678999999999999999999999999999999999999999999999977668999999999999875 8887653
No 45
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.4e-26 Score=161.35 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.++++.++.|.|+|++||+.+++.. +|+++.
T Consensus 132 ~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~v 207 (356)
T PRK11650 132 PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVV 207 (356)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 678999999999999999999999999999999999999999999999877668999999999999876 888653
No 46
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.7e-26 Score=156.36 Aligned_cols=76 Identities=36% Similarity=0.598 Sum_probs=69.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 142 ~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~ 218 (290)
T PRK13634 142 SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVV 218 (290)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999876668999999999999865 888753
No 47
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.6e-26 Score=156.05 Aligned_cols=74 Identities=32% Similarity=0.582 Sum_probs=70.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
..+|||||+|||+|||||+++|+++|.|||+++|||.+.+.+++.|++++++.|.|+|+..|+.+.+.. |+|++
T Consensus 145 a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII 219 (258)
T ss_pred hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe
Confidence 468999999999999999999999999999999999999999999999999999999999999999976 88875
No 48
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.5e-26 Score=153.99 Aligned_cols=75 Identities=36% Similarity=0.517 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++.|.|||++||+++++.. +|+++.
T Consensus 126 ~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~ 201 (255)
T PRK11248 126 IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVL 201 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999865558999999999999876 787653
No 49
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.2e-26 Score=159.96 Aligned_cols=75 Identities=31% Similarity=0.487 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus 138 ~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~ 213 (343)
T PRK11153 138 PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAV 213 (343)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876668999999999999876 888653
No 50
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.5e-26 Score=154.43 Aligned_cols=75 Identities=32% Similarity=0.553 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus 158 ~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~ 233 (269)
T cd03294 158 PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAI 233 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 578999999999999999999999999999999999999999999999866558999999999998865 787653
No 51
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.93 E-value=4.8e-26 Score=151.17 Aligned_cols=74 Identities=31% Similarity=0.450 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~ 215 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTV 215 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999865 58999999999999876 787653
No 52
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.93 E-value=5.8e-26 Score=148.79 Aligned_cols=74 Identities=39% Similarity=0.541 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus 134 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~ 208 (214)
T cd03292 134 PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIA 208 (214)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998554 8899999999999876 788653
No 53
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=4.7e-26 Score=161.26 Aligned_cols=76 Identities=32% Similarity=0.537 Sum_probs=69.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.+.+|||||||||+|||||+.+|+++||||||++||+..++.+.+.+.++.++.|+|||++||+++++.. +|+++.
T Consensus 126 ~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~v 202 (363)
T TIGR01186 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVI 202 (363)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999876668999999999999865 888753
No 54
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.3e-26 Score=154.91 Aligned_cols=75 Identities=33% Similarity=0.429 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.+++++.|.|||++||+++++..+|+++.
T Consensus 138 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~ 212 (279)
T PRK13650 138 PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLV 212 (279)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876558999999999999877888653
No 55
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.93 E-value=8e-26 Score=145.75 Aligned_cols=75 Identities=32% Similarity=0.463 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus 95 ~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~ 170 (180)
T cd03214 95 FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVIL 170 (180)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999998865447899999999999865 787653
No 56
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=6.5e-26 Score=153.01 Aligned_cols=75 Identities=25% Similarity=0.338 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.|.+++++.|.|||++||+++++.. +|+++.
T Consensus 113 ~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~ 188 (246)
T cd03237 113 VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV 188 (246)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999876668999999999999886 888653
No 57
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.93 E-value=5.4e-26 Score=160.77 Aligned_cols=76 Identities=25% Similarity=0.427 Sum_probs=69.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG-NKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~-g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|.++.++. |.|+|++|||++++.. +|+++.
T Consensus 134 ~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~v 211 (362)
T TIGR03258 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGI 211 (362)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 367899999999999999999999999999999999999999999999987664 7999999999999876 888754
No 58
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=6.8e-26 Score=153.85 Aligned_cols=75 Identities=25% Similarity=0.426 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 141 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~ 216 (269)
T PRK11831 141 PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYI 216 (269)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEE
Confidence 568999999999999999999999999999999999999999999999866558999999999998876 787653
No 59
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.2e-26 Score=152.38 Aligned_cols=75 Identities=32% Similarity=0.536 Sum_probs=69.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++..||.||||||+|||||+++|++++|||||+|||..++..+.+.+.+.. +.|++||++||.+++++. ||+++.
T Consensus 130 Rv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFSSH~m~EvealCDrviv 205 (245)
T COG4555 130 RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFSSHIMQEVEALCDRVIV 205 (245)
T ss_pred HHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEecccHHHHHHhhheEEE
Confidence 357899999999999999999999999999999999999999999999874 569999999999999985 998753
No 60
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.93 E-value=6.8e-26 Score=150.59 Aligned_cols=75 Identities=27% Similarity=0.392 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 123 ~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 198 (230)
T TIGR02770 123 PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAV 198 (230)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999866558899999999999865 787653
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7.2e-26 Score=150.25 Aligned_cols=75 Identities=33% Similarity=0.486 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 138 ~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~ 213 (233)
T cd03258 138 PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAV 213 (233)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999866558999999999999875 788653
No 62
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.93 E-value=7.2e-26 Score=153.59 Aligned_cols=75 Identities=36% Similarity=0.517 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus 131 ~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~ 206 (257)
T PRK11247 131 PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLL 206 (257)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999866568999999999998865 787653
No 63
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=6.3e-26 Score=159.87 Aligned_cols=76 Identities=34% Similarity=0.486 Sum_probs=70.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|.++.++.|.|+|++|||++++.. +|+++.
T Consensus 133 ~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~v 209 (353)
T PRK10851 133 YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVV 209 (353)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999877668999999999999876 888753
No 64
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.93 E-value=5.7e-26 Score=156.61 Aligned_cols=74 Identities=43% Similarity=0.752 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ .|.|||++||+++++.. +|+++.
T Consensus 133 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~ 207 (303)
T TIGR01288 133 VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCV 207 (303)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999865 48999999999999875 888653
No 65
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.9e-26 Score=154.89 Aligned_cols=75 Identities=33% Similarity=0.628 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~ 218 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIV 218 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 678999999999999999999999999999999999999999999999866568999999999998864 788754
No 66
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.93 E-value=5.7e-26 Score=148.62 Aligned_cols=74 Identities=31% Similarity=0.483 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus 124 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~ 198 (208)
T cd03268 124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGI 198 (208)
T ss_pred HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEE
Confidence 468999999999999999999999999999999999999999999998865 58999999999999875 787653
No 67
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.93 E-value=9.7e-26 Score=147.64 Aligned_cols=74 Identities=34% Similarity=0.533 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus 133 ~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~ 207 (213)
T cd03262 133 PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIF 207 (213)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999865 48899999999999875 888653
No 68
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6e-26 Score=159.93 Aligned_cols=76 Identities=36% Similarity=0.468 Sum_probs=70.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||++||+..+.++.+.|+++.++.|.|+|++|||.+++.. +|+++.
T Consensus 133 ~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~v 209 (351)
T PRK11432 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIV 209 (351)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999877668999999999999866 788753
No 69
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=4.3e-26 Score=167.32 Aligned_cols=78 Identities=31% Similarity=0.445 Sum_probs=73.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecCC
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDNY 78 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~~ 78 (79)
.|.+||||||||+.||+||+++|++||+||||++||+..+.++++.|+++.++.|.++|++|||+..+.+ +|+++.-|
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE
Confidence 3789999999999999999999999999999999999999999999999998899999999999999987 89987543
No 70
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6e-26 Score=160.58 Aligned_cols=75 Identities=29% Similarity=0.459 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus 131 ~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~v 206 (369)
T PRK11000 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV 206 (369)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876668999999999998875 788653
No 71
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.8e-26 Score=151.50 Aligned_cols=75 Identities=25% Similarity=0.432 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 226 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYV 226 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999866558999999999999865 787653
No 72
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.93 E-value=9.4e-26 Score=149.22 Aligned_cols=73 Identities=36% Similarity=0.604 Sum_probs=66.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++ .|||++||+++++.. +|+++.
T Consensus 139 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~ 212 (227)
T cd03260 139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAF 212 (227)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEE
Confidence 4789999999999999999999999999999999999999999999998653 899999999998875 787653
No 73
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=9e-26 Score=149.55 Aligned_cols=75 Identities=31% Similarity=0.545 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus 129 ~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~ 204 (230)
T TIGR03410 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYV 204 (230)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999865557999999999999886 787653
No 74
>PRK10908 cell division protein FtsE; Provisional
Probab=99.93 E-value=1.1e-25 Score=148.61 Aligned_cols=74 Identities=30% Similarity=0.469 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~ 209 (222)
T PRK10908 135 PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLT 209 (222)
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 7899999999999876 777653
No 75
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.93 E-value=8.4e-26 Score=157.43 Aligned_cols=75 Identities=35% Similarity=0.459 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus 98 ~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~v 173 (325)
T TIGR01187 98 PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI 173 (325)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876668999999999999876 788753
No 76
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.93 E-value=8.5e-26 Score=148.51 Aligned_cols=74 Identities=30% Similarity=0.523 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus 134 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~ 208 (218)
T cd03266 134 VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVV 208 (218)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEE
Confidence 568999999999999999999999999999999999999999999999864 48899999999998875 787653
No 77
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.93 E-value=8.3e-26 Score=158.62 Aligned_cols=74 Identities=43% Similarity=0.759 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++||+||+++|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++.. ||+++.
T Consensus 170 ~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~i 244 (340)
T PRK13536 170 VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCV 244 (340)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999865 48999999999999976 888753
No 78
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.93 E-value=1.1e-25 Score=151.00 Aligned_cols=75 Identities=32% Similarity=0.468 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~ 221 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLV 221 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 568999999999999999999999999999999999999999999998866558999999999999875 787654
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=153.38 Aligned_cols=74 Identities=34% Similarity=0.503 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.+++++ |.|||++||+++++.. +|+++.
T Consensus 136 ~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~ 210 (274)
T PRK13647 136 PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIV 210 (274)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999999865 888653
No 80
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.93 E-value=1.2e-25 Score=151.43 Aligned_cols=75 Identities=31% Similarity=0.493 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+.+++.. +|+++.
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~ 224 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV 224 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 678999999999999999999999999999999999999999999998866558999999999999975 787653
No 81
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.93 E-value=1.1e-25 Score=148.19 Aligned_cols=74 Identities=27% Similarity=0.455 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus 130 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~ 204 (222)
T cd03224 130 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYV 204 (222)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEE
Confidence 468999999999999999999999999999999999999999999999865 57999999999998865 787653
No 82
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=7.1e-26 Score=149.11 Aligned_cols=75 Identities=32% Similarity=0.512 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
|.+|||||||||++||+|+++-++++|||||++|||..+.++..++.+++.+.+.|++||||.++++.. +++++.
T Consensus 127 P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~f 202 (231)
T COG3840 127 PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVF 202 (231)
T ss_pred ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999876 677653
No 83
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=153.92 Aligned_cols=74 Identities=35% Similarity=0.577 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ .|.|||++||+++++.. +|+++.
T Consensus 143 ~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~ 217 (287)
T PRK13641 143 PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLV 217 (287)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999854 48999999999999875 888653
No 84
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=8.4e-26 Score=149.07 Aligned_cols=70 Identities=33% Similarity=0.503 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAH 72 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d 72 (79)
|.+|||||||||+||||++.+|+++|.||||.+|||....++++++.++++ .|.||+|+|||.+.+.+..
T Consensus 135 P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 135 PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMR 204 (223)
T ss_pred ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhcc
Confidence 679999999999999999999999999999999999999999999999965 5999999999999988753
No 85
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=154.00 Aligned_cols=75 Identities=35% Similarity=0.527 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~ 223 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIV 223 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999866558999999999998865 787653
No 86
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.93 E-value=1.3e-25 Score=148.77 Aligned_cols=74 Identities=35% Similarity=0.519 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus 131 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~ 205 (232)
T cd03218 131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYI 205 (232)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999998865 48899999999988765 787653
No 87
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=1e-25 Score=159.93 Aligned_cols=76 Identities=32% Similarity=0.442 Sum_probs=70.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++.|.|+|++|||.+++.. +|+++.
T Consensus 141 ~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~v 217 (375)
T PRK09452 141 KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVV 217 (375)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999877668999999999999875 888653
No 88
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=9.7e-26 Score=158.91 Aligned_cols=75 Identities=36% Similarity=0.491 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++.|.|+|++||+++++.. +|+++.
T Consensus 132 ~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~v 207 (353)
T TIGR03265 132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVV 207 (353)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999877678999999999999876 888653
No 89
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=153.89 Aligned_cols=74 Identities=36% Similarity=0.588 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.+.++++ .|.|||++||+++++.. +|+++.
T Consensus 142 ~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~ 216 (288)
T PRK13643 142 PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYL 216 (288)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999998865 48999999999998865 888754
No 90
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.93 E-value=1.6e-25 Score=145.95 Aligned_cols=74 Identities=41% Similarity=0.647 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.++++.++ |.|+|++||+++....+|+++.
T Consensus 132 ~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~d~i~~ 205 (206)
T TIGR03608 132 IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVAKQADRVIE 205 (206)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHhhcCEEEe
Confidence 4689999999999999999999999999999999999999999999998654 8999999999998777887753
No 91
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.93 E-value=1.5e-25 Score=148.70 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++..+|+++.
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~ 209 (225)
T PRK10247 135 IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVIT 209 (225)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876568999999999999877888653
No 92
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=149.70 Aligned_cols=75 Identities=36% Similarity=0.505 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus 129 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~ 204 (241)
T PRK14250 129 VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAF 204 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999865458999999999999875 788653
No 93
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=155.52 Aligned_cols=74 Identities=34% Similarity=0.561 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||+|||+..+..+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 163 ~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~v 237 (305)
T PRK13651 163 PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIF 237 (305)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999864 48999999999998765 888753
No 94
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.93 E-value=1.5e-25 Score=151.84 Aligned_cols=75 Identities=25% Similarity=0.370 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|.|||++||+++.+.. +|+++.
T Consensus 148 ~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~ 223 (265)
T TIGR02769 148 PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAV 223 (265)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEE
Confidence 568999999999999999999999999999999999999999999999876558999999999999875 787653
No 95
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=1.6e-25 Score=149.91 Aligned_cols=74 Identities=38% Similarity=0.572 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++ |.|||++||+++++.. +|+++.
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~ 216 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIF 216 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEE
Confidence 5789999999999999999999999999999999999999999999988654 8899999999999875 788653
No 96
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=1.8e-25 Score=143.34 Aligned_cols=71 Identities=27% Similarity=0.427 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+++++..+|+++.
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~d~v~~ 167 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETLASADRILV 167 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence 899999999999999999999999999999999999999999998864 48999999999998877888753
No 97
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=157.80 Aligned_cols=75 Identities=28% Similarity=0.478 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|+++.++.|.|+|++||+++++.. +|+++.
T Consensus 126 ~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~ 201 (352)
T PRK11144 126 PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVV 201 (352)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEE
Confidence 678999999999999999999999999999999999999999999999876668999999999998876 787653
No 98
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.9e-25 Score=148.48 Aligned_cols=75 Identities=31% Similarity=0.531 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus 127 ~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 202 (232)
T PRK10771 127 PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLV 202 (232)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999866558899999999999865 787653
No 99
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.8e-25 Score=152.85 Aligned_cols=75 Identities=36% Similarity=0.491 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++.|.|||++||+++++..+|+++.
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~ 212 (279)
T PRK13635 138 PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIV 212 (279)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE
Confidence 578999999999999999999999999999999999999999999999876558999999999999887888653
No 100
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.4e-25 Score=149.82 Aligned_cols=75 Identities=36% Similarity=0.551 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+.+++.. +|+++.
T Consensus 133 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~ 208 (242)
T cd03295 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAI 208 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999866558999999999998765 787653
No 101
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.93 E-value=1.6e-25 Score=148.87 Aligned_cols=73 Identities=33% Similarity=0.545 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++. + |.|||++||+++++..+|+++.
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~d~v~~ 208 (237)
T cd03252 136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVKNADRIIV 208 (237)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHHhCCEEEE
Confidence 57899999999999999999999999999999999999999999999885 4 7999999999999877887653
No 102
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.9e-25 Score=151.33 Aligned_cols=75 Identities=25% Similarity=0.365 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus 145 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~ 220 (265)
T PRK10575 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVA 220 (265)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999866558999999999999865 787653
No 103
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=1.5e-25 Score=157.58 Aligned_cols=75 Identities=25% Similarity=0.420 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus 129 ~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~ 204 (354)
T TIGR02142 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVV 204 (354)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876658999999999999875 788653
No 104
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-25 Score=160.05 Aligned_cols=75 Identities=28% Similarity=0.535 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|+|||++||+++++.. +|+++.
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEE
Confidence 678999999999999999999999999999999999999999999999876568999999999999865 788653
No 105
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.93 E-value=1.8e-25 Score=150.86 Aligned_cols=75 Identities=29% Similarity=0.504 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++.|.|||++||+++++.. +|+++.
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876558999999999998765 787653
No 106
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.9e-25 Score=152.56 Aligned_cols=75 Identities=39% Similarity=0.553 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.+.+++++.|.|||++||+++++..+|+++.
T Consensus 142 ~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~ 216 (280)
T PRK13633 142 PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIV 216 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEE
Confidence 578999999999999999999999999999999999999999999999866558999999999999877888754
No 107
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=2.4e-25 Score=146.42 Aligned_cols=75 Identities=32% Similarity=0.558 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.+.++.++.|.|+|++||+.+++.. +|+++.
T Consensus 126 ~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~ 201 (213)
T TIGR01277 126 PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAV 201 (213)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEE
Confidence 578999999999999999999999999999999999999999999999866558999999999998865 788653
No 108
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=1.4e-25 Score=163.58 Aligned_cols=75 Identities=33% Similarity=0.494 Sum_probs=69.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~ 229 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAV 229 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEE
Confidence 678999999999999999999999999999999999999999999999876558999999999999875 788754
No 109
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=151.36 Aligned_cols=74 Identities=32% Similarity=0.451 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus 134 ~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~ 208 (271)
T PRK13638 134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYV 208 (271)
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998654 8899999999999865 787653
No 110
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.93 E-value=2e-25 Score=149.04 Aligned_cols=75 Identities=36% Similarity=0.628 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++||+||+.+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus 151 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 226 (236)
T cd03267 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLV 226 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEE
Confidence 468999999999999999999999999999999999999999999999876557899999999998865 787653
No 111
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=155.32 Aligned_cols=74 Identities=39% Similarity=0.591 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999998865 48999999999998754 888754
No 112
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=2.3e-25 Score=147.97 Aligned_cols=73 Identities=23% Similarity=0.395 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||||||||++|||+++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+.+++.. +|+++
T Consensus 140 ~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~ 213 (224)
T cd03220 140 VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRAL 213 (224)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 5689999999999999999999999999999999999999999999998655 7899999999999875 78764
No 113
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=1.9e-25 Score=146.99 Aligned_cols=72 Identities=35% Similarity=0.469 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.++.+ +.|||++||++++...+|+++.
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~d~v~~ 210 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLDLVDRIIV 210 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHHhCCEEEE
Confidence 58999999999999999999999999999999999999999999998854 3899999999998766888653
No 114
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.93 E-value=2e-25 Score=151.44 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. +|+++
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~ 221 (267)
T PRK15112 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVL 221 (267)
T ss_pred chhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEE
Confidence 568999999999999999999999999999999999999999999999876558999999999999876 78764
No 115
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2e-25 Score=146.23 Aligned_cols=74 Identities=36% Similarity=0.593 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+.+++.. +|+++.
T Consensus 126 ~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 126 VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLL 200 (210)
T ss_pred HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEE
Confidence 4689999999999999999999999999999999999999999999988654 7899999999998865 787653
No 116
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2e-25 Score=148.58 Aligned_cols=74 Identities=28% Similarity=0.521 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~ 209 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYV 209 (237)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEE
Confidence 4689999999999999999999999999999999999999999999998654 8999999999998765 788653
No 117
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.93 E-value=2.9e-25 Score=146.67 Aligned_cols=74 Identities=30% Similarity=0.399 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+.+++.. +|+++.
T Consensus 147 ~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 147 PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVMD 221 (224)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeEe
Confidence 578999999999999999999999999999999999999999999999854 48999999999998864 888764
No 118
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-25 Score=151.56 Aligned_cols=74 Identities=32% Similarity=0.574 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~ 217 (280)
T PRK13649 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYV 217 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998654 8999999999998865 787643
No 119
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=2.7e-25 Score=149.61 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++
T Consensus 138 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~ 212 (254)
T PRK10418 138 PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVA 212 (254)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEE
Confidence 468999999999999999999999999999999999999999999999876568999999999999865 78764
No 120
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-25 Score=152.01 Aligned_cols=75 Identities=36% Similarity=0.515 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.+++++.|.|||++||+++++.. +|+++.
T Consensus 139 ~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~ 214 (283)
T PRK13636 139 THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFV 214 (283)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876558999999999999875 888653
No 121
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2e-25 Score=158.55 Aligned_cols=76 Identities=34% Similarity=0.438 Sum_probs=69.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||++||+..++.+.+.+.++.++.|.|+|++||+.+++.. +|+++.
T Consensus 146 ~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~v 222 (377)
T PRK11607 146 KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAI 222 (377)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999877678999999999999876 888653
No 122
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=2.2e-25 Score=162.23 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus 166 ~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~ 241 (520)
T TIGR03269 166 ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIW 241 (520)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 678999999999999999999999999999999999999999999999876668999999999999875 788754
No 123
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-25 Score=151.30 Aligned_cols=74 Identities=31% Similarity=0.429 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+..||+|||||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ .|.|||++||+++++..+|+++.
T Consensus 134 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~~~~d~v~~ 207 (274)
T PRK13644 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEELHDADRIIV 207 (274)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHhhCCEEEE
Confidence 578999999999999999999999999999999999999999999998864 48999999999999877888653
No 124
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-25 Score=150.31 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus 141 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~ 216 (265)
T PRK10253 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIA 216 (265)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999866558999999999998865 787653
No 125
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=2.3e-25 Score=162.52 Aligned_cols=76 Identities=30% Similarity=0.486 Sum_probs=69.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.+.+|||||||||+|||||+.+|+++||||||+|||+.+++.+++.|.+++++.|.|||++||+++++.. +|+++.
T Consensus 422 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~ 498 (529)
T PRK15134 422 YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIV 498 (529)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEE
Confidence 3679999999999999999999999999999999999999999999999876558999999999999876 888754
No 126
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.93 E-value=3e-25 Score=147.17 Aligned_cols=73 Identities=29% Similarity=0.467 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||+|||||++|||||+.+|+++|+||||+|||+.++..+.+.+.++.+ .|.|+|++||+++++.. +|+++
T Consensus 111 ~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~ 184 (223)
T TIGR03771 111 VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVV 184 (223)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 568999999999999999999999999999999999999999999998865 48999999999998865 78765
No 127
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.7e-25 Score=142.44 Aligned_cols=72 Identities=40% Similarity=0.632 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
||+|||||++|||||+.+|+++||||||+|||+.++..+.+.+.+++++.|.|+|++||+++++.. +|+++.
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 173 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 899999999999999999999999999999999999999999999876547899999999999875 788653
No 128
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.3e-25 Score=145.99 Aligned_cols=73 Identities=40% Similarity=0.611 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++++ +.|+|++||+++++.. +|+++.
T Consensus 128 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~ 201 (211)
T cd03264 128 IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAV 201 (211)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999998854 4899999999999875 787653
No 129
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=3.5e-25 Score=149.19 Aligned_cols=74 Identities=39% Similarity=0.581 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~ 224 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIF 224 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEE
Confidence 568999999999999999999999999999999999999999999999865 48999999999999886 788653
No 130
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.3e-25 Score=151.13 Aligned_cols=75 Identities=29% Similarity=0.490 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 135 ~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~ 210 (277)
T PRK13652 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYV 210 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876558999999999999864 888653
No 131
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=3.3e-25 Score=147.75 Aligned_cols=73 Identities=37% Similarity=0.586 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.+.++.++ |.|+|++||+++++.. +|+++
T Consensus 134 ~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~ 207 (240)
T PRK09493 134 PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLI 207 (240)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 5689999999999999999999999999999999999999999999988654 8999999999999865 78764
No 132
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=4.5e-25 Score=140.75 Aligned_cols=71 Identities=28% Similarity=0.432 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
||+||+||+++|||++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~ 154 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTV 154 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999988644 8899999999998765 787653
No 133
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.6e-25 Score=150.95 Aligned_cols=75 Identities=33% Similarity=0.453 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.+++++.|.|+|++||+++++..+|+++.
T Consensus 138 ~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~ 212 (277)
T PRK13642 138 PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILV 212 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876558999999999999877888653
No 134
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.5e-25 Score=165.41 Aligned_cols=76 Identities=26% Similarity=0.408 Sum_probs=70.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|.++.++.|.|||++|||++++.. +|+++.
T Consensus 460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~v 536 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAV 536 (623)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3679999999999999999999999999999999999999999999999876668999999999999876 888764
No 135
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.2e-25 Score=141.65 Aligned_cols=71 Identities=45% Similarity=0.815 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++ |.|+|++||+.+++.. +|+++.
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~ 167 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAI 167 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEE
Confidence 8999999999999999999999999999999999999999999998765 8999999999998875 787653
No 136
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.1e-25 Score=148.70 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus 136 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~ 210 (255)
T PRK11231 136 LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVV 210 (255)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEE
Confidence 5789999999999999999999999999999999999999999999988654 8999999999999865 787653
No 137
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.6e-25 Score=150.17 Aligned_cols=75 Identities=36% Similarity=0.492 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||++||||++.+|+++||||||+|||+.+++.+++.+.++.++.|.|+|++||+++++..+|+++.
T Consensus 140 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~ 214 (269)
T PRK13648 140 PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIV 214 (269)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEE
Confidence 568999999999999999999999999999999999999999999999866558999999999998877888653
No 138
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=1.8e-25 Score=164.06 Aligned_cols=77 Identities=31% Similarity=0.428 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN 77 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~ 77 (79)
.|.+||||||||++|||||+.+|+++++||||+.||+..+..+.+.|.++.++.|.|++|||||+.++++ ||+++.-
T Consensus 426 yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm 503 (539)
T COG1123 426 YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVM 503 (539)
T ss_pred CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEE
Confidence 4789999999999999999999999999999999999999999999999988889999999999999988 8987653
No 139
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.92 E-value=4.2e-25 Score=149.24 Aligned_cols=75 Identities=29% Similarity=0.472 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++.|.|||++||+++++.. +|+++.
T Consensus 118 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~ 193 (251)
T PRK09544 118 MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLC 193 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999866557899999999999865 787653
No 140
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.92 E-value=4.5e-25 Score=148.16 Aligned_cols=75 Identities=32% Similarity=0.465 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCF 219 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 568999999999999999999999999999999999999999999999876558999999999999865 787653
No 141
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.4e-25 Score=148.80 Aligned_cols=75 Identities=25% Similarity=0.474 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++|||+|+.+|+++||||||+|||+.++..+.+.+.+++++.|.|+|++||+++++.. +|+++.
T Consensus 148 ~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~ 223 (261)
T PRK14258 148 ALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAF 223 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEE
Confidence 468999999999999999999999999999999999999999999998865458999999999999875 788653
No 142
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-25 Score=148.09 Aligned_cols=73 Identities=33% Similarity=0.550 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~ 220 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAF 220 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999984 4 6899999999999865 788653
No 143
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=3e-25 Score=161.51 Aligned_cols=75 Identities=24% Similarity=0.431 Sum_probs=69.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++.|.|||++||+++++.. +|+++.
T Consensus 425 ~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~ 500 (520)
T TIGR03269 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAAL 500 (520)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999876568999999999999876 788754
No 144
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.4e-25 Score=164.73 Aligned_cols=76 Identities=30% Similarity=0.413 Sum_probs=70.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|++|||||||++||+..+.++.++++++.++.|.|||++|||++++.. +|+++.
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999876668999999999999876 888765
No 145
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.9e-25 Score=161.33 Aligned_cols=74 Identities=27% Similarity=0.464 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+++++.+++++ |.|||++||+++++.. ||+++.
T Consensus 403 ~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~ 477 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLV 477 (506)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999999876 888653
No 146
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.6e-25 Score=154.70 Aligned_cols=76 Identities=33% Similarity=0.463 Sum_probs=71.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.|.+|||||||||++||||+..|++||||||+++||...+.++...|.++..+.|.|+++||||.+++.. +|+++.
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvv 210 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVV 210 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEE
Confidence 3789999999999999999999999999999999999999999999999988779999999999999987 898764
No 147
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.92 E-value=3.8e-25 Score=157.53 Aligned_cols=75 Identities=32% Similarity=0.550 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus 162 ~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~v 237 (382)
T TIGR03415 162 PGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAI 237 (382)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999876668999999999999865 788653
No 148
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.92 E-value=5.5e-25 Score=146.46 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hccee
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVI 75 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~ 75 (79)
+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.+ .|.|||++||+++++.. +|+++
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEE
Confidence 5999999999999999999999999999999999999999999999864 47899999999999875 58765
No 149
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.92 E-value=2.3e-25 Score=144.24 Aligned_cols=65 Identities=35% Similarity=0.610 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||++++
T Consensus 125 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tili~sH~~~~ 189 (190)
T TIGR01166 125 THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTHDVDL 189 (190)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeecccc
Confidence 5789999999999999999999999999999999999999999999998654 8999999999865
No 150
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=4.6e-25 Score=147.07 Aligned_cols=73 Identities=27% Similarity=0.398 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++||||++.+|+++||||||+|||+.++..+++.+.++.+ +.|+|++||+++++.. +|+++.
T Consensus 141 ~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~ 214 (242)
T TIGR03411 141 AGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTV 214 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999854 6899999999999875 887653
No 151
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.4e-25 Score=147.89 Aligned_cols=73 Identities=30% Similarity=0.552 Sum_probs=66.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++. + +.|+|++||+++++.. +|+++.
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~ 221 (254)
T PRK14273 148 ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAF 221 (254)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 57899999999999999999999999999999999999999999999984 4 6899999999999865 788653
No 152
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=5.7e-25 Score=141.98 Aligned_cols=71 Identities=31% Similarity=0.511 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
||+|||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~ 176 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILV 176 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 8999999999999999999999999999999999999999999988654 7999999999998876 787653
No 153
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.5e-25 Score=148.43 Aligned_cols=73 Identities=29% Similarity=0.515 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + |.|||++||+++++.. +|+++.
T Consensus 152 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~ 225 (258)
T PRK14268 152 ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGF 225 (258)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999884 4 6899999999999865 788653
No 154
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.2e-25 Score=149.66 Aligned_cols=74 Identities=38% Similarity=0.523 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+.+|||||+||++|||||+.+|+++||||||+|||+.+++.+++.+.++.++.+.|+|++||+++++..+|+++
T Consensus 140 ~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~ 213 (271)
T PRK13632 140 PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVI 213 (271)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEE
Confidence 57899999999999999999999999999999999999999999999986654689999999999887788764
No 155
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.92 E-value=5.4e-25 Score=146.43 Aligned_cols=73 Identities=27% Similarity=0.444 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++. .|.|+|++||+++++..+|+++.
T Consensus 137 ~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~~~d~v~~ 209 (238)
T cd03249 137 GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIRNADLIAV 209 (238)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHhhCCEEEE
Confidence 46899999999999999999999999999999999999999999999884 48999999999999877888653
No 156
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.92 E-value=4.9e-25 Score=157.76 Aligned_cols=73 Identities=26% Similarity=0.394 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||||||||++|||||+++|+++||||||+|||+..+.+++++|+++++ .|.|||++||+++++.. +|+++
T Consensus 137 ~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii 210 (402)
T PRK09536 137 VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELV 210 (402)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEE
Confidence 568999999999999999999999999999999999999999999999975 48899999999999965 88865
No 157
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.8e-25 Score=150.36 Aligned_cols=75 Identities=37% Similarity=0.514 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++..+|+++.
T Consensus 141 ~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~ 215 (282)
T PRK13640 141 PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLV 215 (282)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876558999999999999877888653
No 158
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.9e-25 Score=160.62 Aligned_cols=74 Identities=24% Similarity=0.397 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|+++||||||+|||+.+++.+.+.|.++++ .|.|||++|||++++.. +|+++.
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~ 481 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAV 481 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEE
Confidence 578999999999999999999999999999999999999999999999865 48999999999998876 888654
No 159
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=4.9e-25 Score=144.69 Aligned_cols=73 Identities=26% Similarity=0.240 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+++||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++.++ |.|+|++||+.+++.. |+++.
T Consensus 125 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~-~~~~~ 197 (207)
T PRK13539 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ-GGIVIAATHIPLGLPG-ARELD 197 (207)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCchhhcc-CcEEe
Confidence 4689999999999999999999999999999999999999999999988654 8999999999999887 76653
No 160
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.92 E-value=6.6e-25 Score=146.97 Aligned_cols=73 Identities=34% Similarity=0.563 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ +.|+|++||+++++.. +|+++.
T Consensus 142 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~ 215 (247)
T TIGR00972 142 ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAF 215 (247)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999854 4899999999998865 888653
No 161
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.92 E-value=6.1e-25 Score=141.30 Aligned_cols=73 Identities=27% Similarity=0.550 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+||+||++||||++.+|+++||||||+|||+.+++.+++.+.++. + +.|+|++||+++++..+|+++.
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~~ 168 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGIEHMDKILF 168 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHhCCEEEE
Confidence 46899999999999999999999999999999999999999999999874 4 7899999999999877887653
No 162
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=6.5e-25 Score=145.12 Aligned_cols=73 Identities=30% Similarity=0.504 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||+|||+..++.+.+.+.++. + +.|+|++||+++++..+|+++.
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~i~~ 220 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP-E-RRTVLVIAHRLSTVERADQILV 220 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHHhCCEEEE
Confidence 57899999999999999999999999999999999999999999999875 3 5899999999999877888754
No 163
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6e-25 Score=145.36 Aligned_cols=73 Identities=26% Similarity=0.424 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+++.+.++. + |.|||++||+++++..+|+++.
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~i~~ 209 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIKNADKILV 209 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEEE
Confidence 47899999999999999999999999999999999999999999999874 4 7999999999999877887653
No 164
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=7e-25 Score=148.17 Aligned_cols=75 Identities=28% Similarity=0.399 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 2 EISSRGGQQRRVSFAVALM------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
+.+||||||||++|||||+ .+|+++||||||+|||+.++..+.+.|.++.++.|.|||++||+++++.. +|++
T Consensus 132 ~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 132 YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEE
Confidence 5789999999999999999 59999999999999999999999999999864458899999999999875 8886
Q ss_pred ec
Q psy5634 75 ID 76 (79)
Q Consensus 75 ~~ 76 (79)
+.
T Consensus 212 ~~ 213 (258)
T PRK13548 212 VL 213 (258)
T ss_pred EE
Confidence 53
No 165
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=7.2e-25 Score=146.41 Aligned_cols=71 Identities=27% Similarity=0.388 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hccee
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVI 75 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~ 75 (79)
+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.++.+ .|.|||++||+++++.. +|+++
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~ 217 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVH 217 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEE
Confidence 7999999999999999999999999999999999999999999998854 47899999999999876 57754
No 166
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=8.9e-25 Score=141.88 Aligned_cols=74 Identities=27% Similarity=0.411 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||++||||++.+ |+++||||||++||+..++.+.+.+.++++ .|.|||++||+++++..+|+++.
T Consensus 85 ~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~~~~d~i~~ 160 (176)
T cd03238 85 LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVLSSADWIID 160 (176)
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence 578999999999999999999 999999999999999999999999998864 58999999999999877888754
No 167
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.1e-25 Score=146.33 Aligned_cols=73 Identities=38% Similarity=0.620 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+.+++.. +|+++
T Consensus 139 ~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~ 212 (242)
T PRK11124 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVV 212 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEE
Confidence 568999999999999999999999999999999999999999999998854 48999999999999865 78764
No 168
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.7e-25 Score=148.90 Aligned_cols=73 Identities=27% Similarity=0.451 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++ |.|||++||+++++.. +|+++
T Consensus 140 ~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~ 213 (272)
T PRK15056 140 IGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTV 213 (272)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999998865 77764
No 169
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6.5e-25 Score=145.59 Aligned_cols=73 Identities=29% Similarity=0.502 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++. + +.|||++||+++++..+|+++.
T Consensus 136 ~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~v~~ 208 (234)
T cd03251 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIENADRIVV 208 (234)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEEE
Confidence 56899999999999999999999999999999999999999999999884 4 7899999999999877888753
No 170
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.4e-25 Score=146.95 Aligned_cols=73 Identities=26% Similarity=0.502 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + +.|||++||+++++.. +|+++.
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 144 AFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEE
Confidence 56899999999999999999999999999999999999999999999984 4 6899999999998865 888653
No 171
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=5.7e-25 Score=159.03 Aligned_cols=74 Identities=27% Similarity=0.367 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||+||+.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus 133 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~ 207 (490)
T PRK10938 133 FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGV 207 (490)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEE
Confidence 6799999999999999999999999999999999999999999999998654 8999999999999876 787653
No 172
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.2e-25 Score=159.83 Aligned_cols=74 Identities=23% Similarity=0.410 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.|.+++++ |.|||++|||++++.. +|+++.
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~ 468 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVV 468 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 8899999999999976 788653
No 173
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.7e-25 Score=156.19 Aligned_cols=76 Identities=30% Similarity=0.456 Sum_probs=71.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+|.+|||||||||++||||+++|+++|||||+|+||...+..+...|+++.++.|.|+|+||||..++.. +|++..
T Consensus 130 ~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~V 206 (338)
T COG3839 130 KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV 206 (338)
T ss_pred CcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEE
Confidence 4789999999999999999999999999999999999999999999999988889999999999999987 888754
No 174
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6.8e-25 Score=145.64 Aligned_cols=73 Identities=27% Similarity=0.498 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + |.|+|++||+.+++..+|+++.
T Consensus 135 ~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~d~~~~ 207 (236)
T cd03253 135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVNADKIIV 207 (236)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEEE
Confidence 46899999999999999999999999999999999999999999999885 4 8999999999999877888653
No 175
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-25 Score=159.77 Aligned_cols=74 Identities=30% Similarity=0.468 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||+++.+|+++||||||+|||+.+++.+++.+.++.++ |.|||++|||++++.. +|+++.
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~ 463 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILV 463 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEE
Confidence 6789999999999999999999999999999999999999999999988654 8999999999999876 788754
No 176
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=5.4e-25 Score=159.47 Aligned_cols=74 Identities=28% Similarity=0.458 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+.+++++ |.|||++|||++++.. +|+++.
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~ 475 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLV 475 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999999876 788653
No 177
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.92 E-value=6.6e-25 Score=145.00 Aligned_cols=74 Identities=34% Similarity=0.515 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus 122 ~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~ 196 (223)
T TIGR03740 122 AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILSEVQQLADHIGI 196 (223)
T ss_pred HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEE
Confidence 468999999999999999999999999999999999999999999999864 48899999999999865 888653
No 178
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=8.2e-25 Score=144.45 Aligned_cols=75 Identities=28% Similarity=0.467 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||++|||+|+.+|+++||||||+|||+.++..+.+.|.++.++.+.|+|++||+++....+|+++.
T Consensus 139 ~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~ 213 (220)
T TIGR02982 139 PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVH 213 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE
Confidence 568999999999999999999999999999999999999999999999876558999999999987666888753
No 179
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.7e-25 Score=146.47 Aligned_cols=73 Identities=32% Similarity=0.497 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + |.|+|++||+++++.. +|+++.
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAF 217 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEE
Confidence 56899999999999999999999999999999999999999999999884 4 7899999999998865 787653
No 180
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=3.8e-25 Score=154.73 Aligned_cols=75 Identities=32% Similarity=0.573 Sum_probs=70.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+|.+|||||||||.|||||+.+|+++|+|||||+|||--+.++.+.|.++.++.++||+|+|||++++.+ .|+|.
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE
Confidence 4789999999999999999999999999999999999999999999999988889999999999999977 67753
No 181
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=1.1e-24 Score=148.09 Aligned_cols=75 Identities=28% Similarity=0.412 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus 149 ~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~ 224 (268)
T PRK10419 149 PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMV 224 (268)
T ss_pred CccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999876558999999999999875 787653
No 182
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.92 E-value=7.6e-25 Score=144.15 Aligned_cols=73 Identities=37% Similarity=0.752 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ +.|+|++||+++++.. +|+++.
T Consensus 131 ~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~ 204 (220)
T cd03263 131 ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAI 204 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEE
Confidence 468999999999999999999999999999999999999999999998854 4899999999999875 787653
No 183
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1e-24 Score=148.64 Aligned_cols=74 Identities=36% Similarity=0.557 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.+.++.++ |.|||++||+++++.. +|+++.
T Consensus 135 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~ 209 (275)
T PRK13639 135 PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYV 209 (275)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999999875 888653
No 184
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.9e-25 Score=147.83 Aligned_cols=73 Identities=30% Similarity=0.530 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. + +.|||++||+++++.. +|+++.
T Consensus 162 ~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~v~~ 235 (268)
T PRK14248 162 ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-E-EYSIIIVTHNMQQALRVSDRTAF 235 (268)
T ss_pred cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEEeCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999985 3 5899999999998865 788653
No 185
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=7.1e-25 Score=144.75 Aligned_cols=75 Identities=33% Similarity=0.552 Sum_probs=68.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.|..|||||+||++|||||+.+|+++++||||++|||....++++.+.+++++ |+|.+++||.|.++.. +..++.
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~f 224 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIF 224 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEE
Confidence 36789999999999999999999999999999999999999999999999765 8999999999999987 444443
No 186
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.5e-25 Score=145.63 Aligned_cols=74 Identities=32% Similarity=0.493 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~ 209 (241)
T PRK10895 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYI 209 (241)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEE
Confidence 468999999999999999999999999999999999999999999998754 48999999999987765 787653
No 187
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=7e-25 Score=143.56 Aligned_cols=76 Identities=26% Similarity=0.412 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
.|.+||||++|||+||||++..|++++.||||.+||..+.+++.+++..++++.|.|.++||||...+.+|+|.+.
T Consensus 143 yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r 218 (228)
T COG4181 143 YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLR 218 (228)
T ss_pred CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheee
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999998765
No 188
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=5.8e-25 Score=160.09 Aligned_cols=74 Identities=36% Similarity=0.527 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|.+++++ |.|||++|||++++.. +|+++.
T Consensus 401 ~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~ 475 (510)
T PRK15439 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLV 475 (510)
T ss_pred cccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999999976 788754
No 189
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.8e-25 Score=159.08 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus 143 ~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~ 217 (510)
T PRK09700 143 VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTV 217 (510)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999999876 788653
No 190
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=7.7e-25 Score=158.68 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 139 ~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~ 213 (500)
T TIGR02633 139 VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICV 213 (500)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999864 48999999999999876 788754
No 191
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=8.8e-25 Score=162.14 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=70.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.+.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++.|.|+|++|||++++.. +|+++.
T Consensus 450 ~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrviv 526 (590)
T PRK13409 450 NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV 526 (590)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999977668999999999999876 888753
No 192
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.92 E-value=1.3e-24 Score=138.98 Aligned_cols=71 Identities=30% Similarity=0.451 Sum_probs=64.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||+++|||++.+|+++||||||+|||+..++.+.+.+.++ +.|+|++||+.+....+|+++.
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~~~~d~i~~ 159 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLWKFHDRVLD 159 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHHhhCCEEEE
Confidence 5789999999999999999999999999999999999999999988865 5799999999987766888753
No 193
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=7.4e-25 Score=159.05 Aligned_cols=74 Identities=30% Similarity=0.464 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~ 467 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILV 467 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999999876 788653
No 194
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=145.69 Aligned_cols=73 Identities=30% Similarity=0.513 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~~~~~~~~d~i~~ 219 (252)
T PRK14239 146 ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DYTMLLVTRSMQQASRISDRTGF 219 (252)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CCeEEEEECCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999885 3 5899999999998765 788653
No 195
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=1.5e-24 Score=144.61 Aligned_cols=74 Identities=27% Similarity=0.455 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||+|+.+| +++||||||+|||+..+..+.+.+.++++ .|.|+|++||+++++..+|+++.
T Consensus 135 ~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~~~~~~d~i~~ 210 (226)
T cd03270 135 APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDEDTIRAADHVID 210 (226)
T ss_pred cCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHHHHHhCCEEEE
Confidence 6789999999999999999998 59999999999999999999999998854 48999999999998877888754
No 196
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.3e-24 Score=144.57 Aligned_cols=75 Identities=35% Similarity=0.474 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 128 ~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~ 203 (232)
T cd03300 128 PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAV 203 (232)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 568999999999999999999999999999999999999999999999866558999999999998865 788653
No 197
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.1e-24 Score=143.58 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=66.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||+|||||++|||+++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +++++
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~ 208 (214)
T PRK13543 135 VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRML 208 (214)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChhhhhhhcceEE
Confidence 4689999999999999999999999999999999999999999999988654 7899999999999876 77765
No 198
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.92 E-value=1.6e-24 Score=141.73 Aligned_cols=73 Identities=27% Similarity=0.406 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH--hhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR--QAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~--~~d~i~~ 76 (79)
.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+++.+. .+|+++.
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~ 177 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHV 177 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEE
Confidence 58999999999999999999999999999999999999999999999864 4789999999999987 4788653
No 199
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=147.92 Aligned_cols=73 Identities=29% Similarity=0.499 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus 152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEE
Confidence 46899999999999999999999999999999999999999999999884 3 6899999999998865 888653
No 200
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=2.9e-25 Score=156.70 Aligned_cols=76 Identities=33% Similarity=0.487 Sum_probs=71.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+|.+|||||||||+|||||+.+|+++|||||+++||...+.++...++++.++.|.|+|+||||.+++.. +|++..
T Consensus 133 ~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~V 209 (352)
T COG3842 133 KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAV 209 (352)
T ss_pred ChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEE
Confidence 4789999999999999999999999999999999999999999999999988889999999999999976 788754
No 201
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.92 E-value=1.5e-24 Score=145.33 Aligned_cols=72 Identities=25% Similarity=0.322 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hcceec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVID 76 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~~ 76 (79)
+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 151 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~ 224 (252)
T CHL00131 151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHV 224 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEE
Confidence 5999999999999999999999999999999999999999999999864 48999999999998875 687653
No 202
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=9.2e-25 Score=158.54 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.+.++.+ .|.|||++||+++++.. +|+++.
T Consensus 139 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~ 213 (501)
T PRK10762 139 VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTV 213 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999865 48999999999999876 788753
No 203
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=1.9e-24 Score=140.46 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
||+|||||+++||+++.+|++++|||||++||+.+++.+.+.+.++.++.+.|+|++||+++++.. +|+++.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 144 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHV 144 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEE
Confidence 899999999999999999999999999999999999999999998865545899999999999885 787653
No 204
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.92 E-value=1.5e-24 Score=146.06 Aligned_cols=74 Identities=28% Similarity=0.395 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~ 209 (256)
T TIGR03873 135 MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVV 209 (256)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999864 47899999999999965 888653
No 205
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=145.78 Aligned_cols=73 Identities=32% Similarity=0.490 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|+|++||+++++.. +|+++.
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~ 220 (253)
T PRK14267 147 PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAF 220 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEE
Confidence 568999999999999999999999999999999999999999999999853 5899999999999865 787653
No 206
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.6e-24 Score=144.48 Aligned_cols=75 Identities=36% Similarity=0.478 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+||+||++||||++.+|++++|||||+|||+.+++.+.+.+.++..+.|.|+|++||+++++.. +|+++.
T Consensus 127 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~ 202 (235)
T cd03299 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAI 202 (235)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999865558999999999999875 787653
No 207
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.5e-24 Score=138.88 Aligned_cols=70 Identities=39% Similarity=0.602 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
||+|||||++||||++.+|+++||||||+|||+.++..+.+.+.++. + +.|+|++||+++++..+|+++.
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~~ 166 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLSTIRDADRIIV 166 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHhCCEEEE
Confidence 89999999999999999999999999999999999999999999884 3 6899999999999877887653
No 208
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=1.2e-24 Score=158.36 Aligned_cols=74 Identities=24% Similarity=0.393 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus 138 ~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~ 212 (510)
T PRK15439 138 AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISV 212 (510)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999999875 888653
No 209
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=146.90 Aligned_cols=73 Identities=27% Similarity=0.500 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus 161 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~-~~tiiivtH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 161 GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-Q-NYTIVIVTHSMQQAARVSQRTAF 234 (267)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-c-CCeEEEEEcCHHHHHhhCCEEEE
Confidence 56899999999999999999999999999999999999999999999885 3 5899999999999865 787653
No 210
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=146.02 Aligned_cols=73 Identities=27% Similarity=0.495 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~ 219 (258)
T PRK14241 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAF 219 (258)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999884 3 5899999999999865 888753
No 211
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=9.6e-25 Score=150.51 Aligned_cols=73 Identities=41% Similarity=0.599 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++||+||+.+|+++||||||+|||+.+++.+++.+.++. + +.|||++||+++++.. ||+++.
T Consensus 131 ~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~ 204 (301)
T TIGR03522 131 IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVII 204 (301)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 46899999999999999999999999999999999999999999999884 4 6899999999999876 888653
No 212
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.8e-24 Score=146.01 Aligned_cols=73 Identities=32% Similarity=0.500 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. + +.|||++||+++++.. +|+++.
T Consensus 154 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~ 227 (260)
T PRK10744 154 GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAF 227 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999984 3 6899999999998865 787653
No 213
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=158.11 Aligned_cols=74 Identities=26% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 141 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~ 215 (506)
T PRK13549 141 VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICV 215 (506)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEE
Confidence 568999999999999999999999999999999999999999999999864 48899999999999876 788754
No 214
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.5e-24 Score=142.01 Aligned_cols=72 Identities=29% Similarity=0.257 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQA-HTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~-d~i 74 (79)
+.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++.+ .|.|+|++||+.+++..+ +++
T Consensus 127 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~ 199 (204)
T PRK13538 127 VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLPVASDKVRK 199 (204)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhhhccCCceE
Confidence 568999999999999999999999999999999999999999999999864 478999999999998764 344
No 215
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=1.9e-24 Score=141.51 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+||+||++||||++.+|+++||||||+|||+..+..+.+.|.++. + |.|+|++||+++++..+|+++.
T Consensus 123 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~~d~v~~ 195 (207)
T cd03369 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIIDYDKILV 195 (207)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEEE
Confidence 57899999999999999999999999999999999999999999999873 3 7999999999999877888653
No 216
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=144.82 Aligned_cols=73 Identities=32% Similarity=0.548 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + +.|||++||+++.+.. +|+++.
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~ 217 (250)
T PRK14240 144 ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAF 217 (250)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEE
Confidence 56899999999999999999999999999999999999999999999884 4 6899999999998866 787653
No 217
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=145.34 Aligned_cols=73 Identities=32% Similarity=0.540 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||+|||+.+++.+.+.|.++. + |.|||++||+++++.. +|+++.
T Consensus 147 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 147 AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEE
Confidence 46899999999999999999999999999999999999999999999874 4 7999999999999875 787653
No 218
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.92 E-value=2.1e-24 Score=142.19 Aligned_cols=74 Identities=27% Similarity=0.471 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN--HLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~--~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||++||||++.+|+++||||||+|||+.+++.+++ ++..+ ++.|.|+|++||+.+++..+|+++.
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~~~~~~d~i~~ 213 (218)
T cd03290 138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQYLPHADWIIA 213 (218)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChHHHhhCCEEEE
Confidence 46899999999999999999999999999999999999999998 55554 4458999999999999877888654
No 219
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.3e-24 Score=144.39 Aligned_cols=73 Identities=30% Similarity=0.573 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ +.|||++||+++++.. +|+++.
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~ 216 (249)
T PRK14253 143 AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAF 216 (249)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999854 4899999999999876 787653
No 220
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=144.54 Aligned_cols=72 Identities=35% Similarity=0.594 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||+|||||++|||+|+.+|+++||||||+|||+.++..+.+.|.++.+ +.|+|++||+++++.. +|+++
T Consensus 146 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~ 218 (252)
T PRK14255 146 ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTA 218 (252)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEE
Confidence 578999999999999999999999999999999999999999999999854 4799999999999865 78764
No 221
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.91 E-value=1.5e-24 Score=159.38 Aligned_cols=73 Identities=29% Similarity=0.391 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.+..+|+++.
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i~~aD~Iiv 555 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLAQWDQIWV 555 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHHHhCCEEEE
Confidence 46799999999999999999999999999999999999999999998874 37899999999999999999764
No 222
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-24 Score=157.03 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|||++||+++++.. +|+++.
T Consensus 132 ~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~ 206 (491)
T PRK10982 132 VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITI 206 (491)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999864 48999999999999876 787653
No 223
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.1e-24 Score=146.26 Aligned_cols=73 Identities=30% Similarity=0.512 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ +.|||++||+++++.. +|+++.
T Consensus 149 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~ 222 (264)
T PRK14243 149 GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAF 222 (264)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999854 4799999999998876 788753
No 224
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-24 Score=157.45 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 138 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~ 212 (501)
T PRK11288 138 LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITV 212 (501)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999865 48999999999999876 787653
No 225
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=1.6e-24 Score=141.53 Aligned_cols=75 Identities=24% Similarity=0.246 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceecC
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDN 77 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~~ 77 (79)
+.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.|.++.+ .|.|+|++||+...+..+|..+.+
T Consensus 125 ~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~d~~~~~ 199 (200)
T PRK13540 125 CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPLNKADYEEYH 199 (200)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhccccchhhcc
Confidence 468999999999999999999999999999999999999999999999754 488999999999998888765443
No 226
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=144.46 Aligned_cols=73 Identities=34% Similarity=0.548 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + |.|+|++||+++++.. +|+++.
T Consensus 140 ~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~ 213 (246)
T PRK14269 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAF 213 (246)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEE
Confidence 46899999999999999999999999999999999999999999999874 4 7899999999998865 787653
No 227
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.9e-24 Score=144.15 Aligned_cols=73 Identities=30% Similarity=0.485 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.+.++ ++ +.|||++||+++++.. +|+++.
T Consensus 145 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tilivsh~~~~~~~~~d~i~~ 218 (251)
T PRK14249 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQ-NYTIAIVTHNMQQAARASDWTGF 218 (251)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHhhCCEEEE
Confidence 5689999999999999999999999999999999999999999999987 34 7899999999999876 687653
No 228
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=144.11 Aligned_cols=73 Identities=34% Similarity=0.526 Sum_probs=66.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.++++. + +.|+|++||+++++.. +|+++.
T Consensus 146 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~ 219 (252)
T PRK14272 146 ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSF 219 (252)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999884 4 6899999999999876 788653
No 229
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.2e-24 Score=143.96 Aligned_cols=73 Identities=29% Similarity=0.539 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|.++.+ +.|+|++||+++++.. +|+++.
T Consensus 145 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~ 218 (251)
T PRK14270 145 ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAF 218 (251)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEE
Confidence 578999999999999999999999999999999999999999999998854 5899999999998876 788653
No 230
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=146.55 Aligned_cols=73 Identities=27% Similarity=0.498 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~ 232 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNMQQASRVADWTAF 232 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999985 3 5899999999999875 788754
No 231
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.5e-24 Score=144.31 Aligned_cols=73 Identities=32% Similarity=0.513 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. + +.|+|++||+++++.. +|+++.
T Consensus 145 ~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~ 218 (251)
T PRK14251 145 AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAF 218 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEE
Confidence 46899999999999999999999999999999999999999999999884 3 5899999999999865 788653
No 232
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3e-24 Score=144.13 Aligned_cols=73 Identities=27% Similarity=0.496 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++||+++++.. +|+++.
T Consensus 146 ~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 146 AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEE
Confidence 568999999999999999999999999999999999999999999999853 5799999999999865 787653
No 233
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.91 E-value=2.7e-24 Score=140.63 Aligned_cols=73 Identities=27% Similarity=0.277 Sum_probs=64.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH-hhccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR-QAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~-~~d~i~ 75 (79)
+.+||||||||++||||++.+|+++||||||+|||+..++.+.+.+.++.+ .|.|+|++||+..... .+++++
T Consensus 123 ~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~ 196 (201)
T cd03231 123 VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGLSEAGAREL 196 (201)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchhhhhccceeE
Confidence 568999999999999999999999999999999999999999999998755 4789999999877654 466654
No 234
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3e-24 Score=144.74 Aligned_cols=73 Identities=32% Similarity=0.583 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|.++. + +.|+|++||+++++.. +|+++.
T Consensus 153 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~ 226 (259)
T PRK14274 153 ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAF 226 (259)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999984 4 6899999999998865 787653
No 235
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=3.1e-24 Score=141.32 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. + +.|+|++||+++++..+|+++
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~i~ 208 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRLDTIIDSDRIL 208 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEE
Confidence 56899999999999999999999999999999999999999999999874 3 589999999999988788764
No 236
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.91 E-value=3.4e-24 Score=141.96 Aligned_cols=74 Identities=36% Similarity=0.562 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH-HHHH-hhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI-EEAR-QAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~-~~~~-~~d~i~~ 76 (79)
+.+||+||+||++|||+|+.+|+++||||||+|||+.++..+.+.+.++.++ |.|+|++||++ +++. .+|+++.
T Consensus 141 ~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~ 216 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILL 216 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEE
Confidence 4689999999999999999999999999999999999999999999998654 88999999998 4554 4887653
No 237
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.7e-24 Score=145.61 Aligned_cols=73 Identities=26% Similarity=0.502 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|.++. + +.|+|++||+++++.. +|+++.
T Consensus 165 ~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivsH~~~~i~~~~d~i~~ 238 (271)
T PRK14238 165 AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-K-DYSIIIVTHNMQQAARISDKTAF 238 (271)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-c-CCEEEEEEcCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999885 3 6899999999999865 787653
No 238
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=1.9e-24 Score=156.33 Aligned_cols=75 Identities=35% Similarity=0.465 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++.+.|||++||+++++.. +|+++.
T Consensus 399 ~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~ 475 (490)
T PRK10938 399 FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEF 475 (490)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEE
Confidence 578999999999999999999999999999999999999999999999876544679999999999864 576643
No 239
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.91 E-value=4e-24 Score=139.44 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HHHh-hcceec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE-EARQ-AHTVID 76 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~-~~~~-~d~i~~ 76 (79)
+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++ ++.. +|+++.
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~ 184 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLL 184 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEE
Confidence 69999999999999999999999999999999999999999999988654 899999999986 5544 787653
No 240
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.7e-24 Score=144.45 Aligned_cols=73 Identities=27% Similarity=0.471 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus 148 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~i~~~~d~i~~ 221 (259)
T PRK14260 148 ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-S-ELTIAIVTHNMQQATRVSDFTAF 221 (259)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCeEEE
Confidence 46899999999999999999999999999999999999999999999985 3 5899999999999876 787643
No 241
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.91 E-value=4.4e-24 Score=143.60 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcc
Q psy5634 2 EISSRGGQQRRVSFAVALMH-------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHT 73 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~-------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~ 73 (79)
+.+||+|||||++|||||+. +|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+++++.. +|+
T Consensus 124 ~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~ 202 (248)
T PRK03695 124 VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADR 202 (248)
T ss_pred cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence 57899999999999999997 6799999999999999999999999999865 48999999999998765 787
Q ss_pred ee
Q psy5634 74 VI 75 (79)
Q Consensus 74 i~ 75 (79)
++
T Consensus 203 i~ 204 (248)
T PRK03695 203 VW 204 (248)
T ss_pred EE
Confidence 65
No 242
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.9e-24 Score=139.20 Aligned_cols=72 Identities=24% Similarity=0.388 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH-H-Hhhcceec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE-A-RQAHTVID 76 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~-~-~~~d~i~~ 76 (79)
+|||||+||++||||++.+|+++|+||||+|||+.++..+++.+.++.+ .|.|+|++||+++. + ..+|+++.
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~ 181 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLL 181 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEE
Confidence 6999999999999999999999999999999999999999999998864 48999999999973 4 45788653
No 243
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.9e-24 Score=143.34 Aligned_cols=73 Identities=38% Similarity=0.572 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + +.|+|++||+++.+.. +|+++.
T Consensus 144 ~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 144 GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999985 3 6899999999998765 788653
No 244
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=4.1e-24 Score=145.98 Aligned_cols=75 Identities=28% Similarity=0.409 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-h
Q psy5634 2 EISSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-A 71 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~ 71 (79)
+.+|||||+||++|||||+ .+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~ 222 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA 222 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 5789999999999999999 59999999999999999999999999999866558999999999999865 8
Q ss_pred cceec
Q psy5634 72 HTVID 76 (79)
Q Consensus 72 d~i~~ 76 (79)
|+++.
T Consensus 223 d~i~~ 227 (272)
T PRK13547 223 DRIAM 227 (272)
T ss_pred CEEEE
Confidence 87653
No 245
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=5.2e-24 Score=139.14 Aligned_cols=74 Identities=30% Similarity=0.536 Sum_probs=65.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+..++.+.+. +.+..++ |.|||++||+++.+..+|+++.
T Consensus 125 ~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~~d~i~~ 199 (204)
T cd03250 125 GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPHADQIVV 199 (204)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhhCCEEEE
Confidence 468999999999999999999999999999999999999999884 5555444 8999999999998877888754
No 246
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=4.8e-24 Score=142.38 Aligned_cols=74 Identities=32% Similarity=0.509 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||+||+||++|||+++.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++
T Consensus 128 ~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~ 202 (237)
T TIGR00968 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIV 202 (237)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence 468999999999999999999999999999999999999999999999865447999999999998765 78864
No 247
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=146.47 Aligned_cols=71 Identities=31% Similarity=0.590 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.+ +.|||++||+++++.. +|++
T Consensus 178 ~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri 249 (285)
T PRK14254 178 GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKT 249 (285)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEE
Confidence 578999999999999999999999999999999999999999999999864 3799999999999876 7875
No 248
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=2.4e-24 Score=140.20 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
+.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.+.+.. +.|.|+|++||+.+++..+|.+
T Consensus 121 ~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 121 CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCccccchhhee
Confidence 46899999999999999999999999999999999999999999998654 4589999999999998887765
No 249
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.6e-24 Score=146.26 Aligned_cols=73 Identities=32% Similarity=0.534 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. . +.|||++||+++++.. +|+++.
T Consensus 180 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tvIivsH~~~~~~~~~d~i~~ 253 (286)
T PRK14275 180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-G-SYTIMIVTHNMQQASRVSDYTMF 253 (286)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999875 3 5899999999999865 788753
No 250
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.5e-24 Score=144.70 Aligned_cols=73 Identities=32% Similarity=0.522 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ +.|+|++||+++++.. +|+++.
T Consensus 166 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~ 239 (272)
T PRK14236 166 AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAF 239 (272)
T ss_pred cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEE
Confidence 568999999999999999999999999999999999999999999999853 5899999999999865 788653
No 251
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6e-24 Score=148.64 Aligned_cols=73 Identities=32% Similarity=0.563 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.+...+.+.|.++.+ +.|+|++||+++++.. +|+++.
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999998753 5899999999999887 898764
No 252
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.7e-24 Score=143.82 Aligned_cols=73 Identities=33% Similarity=0.566 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+.++..+++.+.++. + +.|+|++||+++++.. +|+++.
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~ 220 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAF 220 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEE
Confidence 46799999999999999999999999999999999999999999999884 4 6899999999998865 788643
No 253
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=142.82 Aligned_cols=73 Identities=29% Similarity=0.542 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.+.++. + +.|+|++||+++++.. +|+++.
T Consensus 161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEE
Confidence 57899999999999999999999999999999999999999999999884 4 6899999999998865 888653
No 254
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=143.41 Aligned_cols=74 Identities=19% Similarity=0.381 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||++.++.. +|+++.
T Consensus 141 ~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~ 215 (264)
T PRK13546 141 VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAW 215 (264)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEE
Confidence 568999999999999999999999999999999999999999999998854 58899999999999876 787653
No 255
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1e-23 Score=141.60 Aligned_cols=73 Identities=33% Similarity=0.522 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||+++.+|+++||||||+|||+.+++.+.+.+.++.+ +.|+|++||+++++.. +|+++.
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~ 220 (253)
T PRK14261 147 ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGF 220 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEE
Confidence 467999999999999999999999999999999999999999999998854 5899999999999865 787653
No 256
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=143.70 Aligned_cols=73 Identities=33% Similarity=0.495 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||+||++|||+|+.+|+++||||||+|||+.+++.+.+.|.++.+ +.|||++||+++++.. +|+++.
T Consensus 161 ~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~ 234 (276)
T PRK14271 161 PFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAAL 234 (276)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999998854 4799999999998875 787653
No 257
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.90 E-value=8.5e-24 Score=155.09 Aligned_cols=73 Identities=30% Similarity=0.496 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+...+.+.+.+..+ ++|+|+|||++..+..+|+++.
T Consensus 478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~~~~~D~Ii~ 550 (582)
T PRK11176 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEKADEILV 550 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999988642 6899999999999988999764
No 258
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.90 E-value=6.7e-24 Score=160.08 Aligned_cols=75 Identities=36% Similarity=0.548 Sum_probs=69.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceecC
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDN 77 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~~ 77 (79)
++.+||||||||++|||||+++|+++|||||||+||+.+.+.+.+.+.++.. |+|+|++||++..++.+|+++..
T Consensus 606 ~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~~adrIiVl 680 (709)
T COG2274 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIRSADRIIVL 680 (709)
T ss_pred CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhhhccEEEEc
Confidence 3568999999999999999999999999999999999999999999998843 79999999999999999998753
No 259
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=140.33 Aligned_cols=72 Identities=26% Similarity=0.541 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|+|++||+++++.. +|+++
T Consensus 144 ~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~ 216 (250)
T PRK14266 144 ALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTS 216 (250)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEE
Confidence 56899999999999999999999999999999999999999999999884 4 6899999999999877 56553
No 260
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.90 E-value=1.1e-23 Score=153.32 Aligned_cols=73 Identities=30% Similarity=0.476 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.+..+|+++.
T Consensus 456 g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHHhCCEEEe
Confidence 45799999999999999999999999999999999999999999998874 37999999999999988999874
No 261
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.6e-23 Score=137.28 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=63.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE-ecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT-THYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~-tH~~~~~~~-~d~i~~ 76 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+.+++.+++.+.++.++.+.|+|++ +|+.+++.. +|+++.
T Consensus 116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 568999999999999999999999999999999999999999999999876546665555 566666654 787653
No 262
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=5.9e-24 Score=145.38 Aligned_cols=78 Identities=26% Similarity=0.416 Sum_probs=72.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecCC
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDNY 78 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~~ 78 (79)
.|.+|||||+||++|||||+.+|+++++|||+++||...+.++.+++.++.++.|.|.+++|||+..+.. +|++..-|
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy 184 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMY 184 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEe
Confidence 3789999999999999999999999999999999999999999999999988889999999999999987 78876543
No 263
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=144.62 Aligned_cols=71 Identities=30% Similarity=0.586 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++++ +.|+|++||+++++.. +|++
T Consensus 198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEE
Confidence 568999999999999999999999999999999999999999999999864 4799999999999876 8875
No 264
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.90 E-value=1.4e-23 Score=154.51 Aligned_cols=73 Identities=29% Similarity=0.461 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+...+.+.+.+.. .++|+|++||+++.++.+|+++.
T Consensus 469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~~~~D~ii~ 541 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVRNADRILV 541 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHHHhCCEEEE
Confidence 45799999999999999999999999999999999999999999998763 26899999999999988998764
No 265
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.90 E-value=1.2e-23 Score=153.78 Aligned_cols=72 Identities=26% Similarity=0.459 Sum_probs=66.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
..||||||||++||||++++|++++|||||++||+.+.+.+.+.|.+..+ ++|+|++||+......+|+++.
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~~~~~D~ii~ 539 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEKADRIVV 539 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhHHHHhCCEEEE
Confidence 57999999999999999999999999999999999999999999988743 6899999999999888998764
No 266
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=141.05 Aligned_cols=73 Identities=34% Similarity=0.571 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|+|++||+++++.. +|+++.
T Consensus 159 ~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~ 232 (265)
T PRK14252 159 AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAY 232 (265)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEE
Confidence 468999999999999999999999999999999999999999999998853 5899999999999865 788754
No 267
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=2e-23 Score=141.69 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||+|||||++|||+++.+|+++||||||++||+.++..+.+.+.++.++ +.|+|++||+++++.. +|+++.
T Consensus 137 ~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~ 211 (255)
T cd03236 137 IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHC 211 (255)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998654 7999999999999885 888653
No 268
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.90 E-value=1.9e-23 Score=152.94 Aligned_cols=75 Identities=23% Similarity=0.424 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..++.+.|+|++||+++....+|+++.
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~ 521 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLE 521 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEE
Confidence 358999999999999999999999999999999999999999998876654447899999999998888998764
No 269
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.90 E-value=1.1e-23 Score=137.21 Aligned_cols=71 Identities=27% Similarity=0.239 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
+.+||+|||||++||||++.+|++++|||||+|||+.+++.+.+.+.++.+ .|.|+|++||+...+.. +++
T Consensus 125 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~~~-~~~ 195 (198)
T TIGR01189 125 AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGLVE-ARE 195 (198)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccccc-eEE
Confidence 568999999999999999999999999999999999999999999998854 47899999999754433 444
No 270
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.90 E-value=1.9e-23 Score=152.81 Aligned_cols=74 Identities=28% Similarity=0.419 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++.. .|+|+|++||+++.+..+|+++.
T Consensus 452 g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~~~~d~i~~ 525 (544)
T TIGR01842 452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSLLGCVDKILV 525 (544)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence 468999999999999999999999999999999999999999999988743 47899999999998888998764
No 271
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=2.4e-23 Score=140.50 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+..+..+++.+.++. + +.|+|++||+++.+..+|+++.
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~dri~~ 226 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTILDADLVLV 226 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHhCCEEEE
Confidence 35899999999999999999999999999999999999999999998863 3 7899999999999887888753
No 272
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=2.3e-23 Score=153.35 Aligned_cols=74 Identities=16% Similarity=0.359 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 141 ~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIiv 215 (549)
T PRK13545 141 VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALW 215 (549)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999998754 48899999999999876 787653
No 273
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.90 E-value=2.1e-23 Score=153.56 Aligned_cols=73 Identities=26% Similarity=0.420 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..+ ++|+|++||++.....+|+++.
T Consensus 474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~~~D~ii~ 546 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIVEADTILV 546 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999988743 6899999999999988998754
No 274
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=3.3e-23 Score=141.53 Aligned_cols=74 Identities=27% Similarity=0.430 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHD---PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~---p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||+||++||++|+.+ |+++||||||+|||+..+..+.+.+.++.+ .|.|+|++||+++++..+|+++.
T Consensus 167 ~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~i~~aD~ii~ 243 (261)
T cd03271 167 ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDVIKCADWIID 243 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence 568999999999999999996 799999999999999999999999999864 48899999999999988888765
No 275
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.90 E-value=2.3e-23 Score=155.82 Aligned_cols=73 Identities=32% Similarity=0.445 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..+ ++|+|++||+++.+..+|+++.
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~~~~D~iiv 671 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLLDLVDRIIV 671 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhCCEEEE
Confidence 458999999999999999999999999999999999999999999988743 7899999999999988999764
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.90 E-value=3.5e-23 Score=129.96 Aligned_cols=69 Identities=32% Similarity=0.438 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+||+||+||++||||++.+|+++|+||||+|||+.++..+.+.++++ +.|++++||+.+++.. +|+++.
T Consensus 70 ~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~ 139 (144)
T cd03221 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIE 139 (144)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEE
Confidence 38999999999999999999999999999999999999999998865 3699999999999876 688753
No 277
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=2.9e-23 Score=142.26 Aligned_cols=72 Identities=26% Similarity=0.421 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
..||+|||||++||||++.+|+++||||||++||+.+...+.+.|.+.. .++|||++||+++++..+|+++.
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~~dri~v 208 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLECQRFLV 208 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHhCCEEEE
Confidence 4599999999999999999999999999999999999999999999763 37999999999999888898754
No 278
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.90 E-value=2.2e-23 Score=156.08 Aligned_cols=71 Identities=34% Similarity=0.510 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+++.+.+.+ .++|+|++||+++.+..+|+++.
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~~D~Iiv 683 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIV 683 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999998875 37899999999999999999764
No 279
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.90 E-value=2.6e-23 Score=153.54 Aligned_cols=73 Identities=26% Similarity=0.420 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+..||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+.+.. + +.|+|++||+++.+..+|+++.
T Consensus 469 ~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~tvI~isH~~~~~~~~d~i~~ 541 (585)
T TIGR01192 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-K-NRTTFIIAHRLSTVRNADLVLF 541 (585)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEEcChHHHHcCCEEEE
Confidence 45799999999999999999999999999999999999999999998763 3 7899999999999988998764
No 280
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-23 Score=152.96 Aligned_cols=73 Identities=37% Similarity=0.557 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+..|||||+||+++|||+..+++++||||||++||.++.+.+.+.+.++++ ++|++++||++..+..+|+|+.
T Consensus 454 G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~~D~I~v 526 (559)
T COG4988 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAADADRIVV 526 (559)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhcCCEEEE
Confidence 567999999999999999999999999999999999999999999999865 5899999999999999999875
No 281
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4e-23 Score=139.74 Aligned_cols=73 Identities=29% Similarity=0.441 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+..||+|||||++||||++.+|+++||||||+|||+.++..+.+.|.++. + +.|+|++||+++++.. +|+++.
T Consensus 151 ~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~ 224 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNPQQVARVADYVAF 224 (257)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999884 3 5899999999999854 787653
No 282
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.89 E-value=3e-23 Score=155.01 Aligned_cols=71 Identities=27% Similarity=0.409 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+++.+.+.+. ++|+|++||+++.+..+|+++.
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iiv 656 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYV 656 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEE
Confidence 4679999999999999999999999999999999999999999988764 4799999999999999999764
No 283
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1e-22 Score=128.47 Aligned_cols=70 Identities=46% Similarity=0.705 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
||+||+||++|+|+++.+|++++|||||+|||+.++..+.+.+.++.+. +.|++++||+++++.. +|+++
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~ 151 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVI 151 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 8999999999999999999999999999999999999999999988654 7899999999999987 58764
No 284
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.89 E-value=5.2e-23 Score=151.10 Aligned_cols=74 Identities=27% Similarity=0.405 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+..+..|+|+|++||+++....+|+++.
T Consensus 469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~ 542 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK 542 (555)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999886653223347999999999998888998764
No 285
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.9e-23 Score=144.56 Aligned_cols=76 Identities=28% Similarity=0.464 Sum_probs=72.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+|.+|||||||||+|+|||+.+|++++||||.++||..-+.+++..+.++.++.+.-|++|||.++++.+ +|+++.
T Consensus 125 ~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~ 201 (352)
T COG4148 125 YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVV 201 (352)
T ss_pred CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEE
Confidence 5889999999999999999999999999999999999999999999999998889999999999999987 888753
No 286
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=4.5e-23 Score=151.65 Aligned_cols=73 Identities=33% Similarity=0.486 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.+..+|+++.
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~~~d~i~~ 521 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALTEASEILV 521 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHHcCCEEEE
Confidence 35799999999999999999999999999999999999999999998874 37899999999999888998754
No 287
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=4.9e-23 Score=151.72 Aligned_cols=73 Identities=38% Similarity=0.541 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.+..+|+++.
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~~~d~i~~ 545 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGLEQFDRICV 545 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHHhCCEEEE
Confidence 45799999999999999999999999999999999999999999998874 37899999999999988998764
No 288
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.8e-23 Score=150.40 Aligned_cols=72 Identities=28% Similarity=0.380 Sum_probs=65.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+||||||||++|||+++.+|+++||||||+|||+.+++.+.+.+.++ +.|||++|||++++.. +|+++.
T Consensus 435 ~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~ 507 (530)
T PRK15064 435 SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIE 507 (530)
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEE
Confidence 36799999999999999999999999999999999999999999988865 3499999999999876 787653
No 289
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=6.5e-23 Score=138.71 Aligned_cols=75 Identities=28% Similarity=0.456 Sum_probs=70.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.++||+|||+|+.|||||+.+|++|+||||.+|+.+....++.+.++++.++.|.||++|.|||+.+.. ||+++.
T Consensus 147 A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~V 222 (250)
T COG0411 147 AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVV 222 (250)
T ss_pred hhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEe
Confidence 358999999999999999999999999999999999999999999999977678999999999999987 888764
No 290
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.3e-23 Score=150.18 Aligned_cols=71 Identities=30% Similarity=0.336 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||++|+.+|+++||||||+|||+.++..+.+.+.+ .|.|||++||+++++.. +|+++.
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEE
Confidence 568999999999999999999999999999999999999999988753 37899999999999876 787653
No 291
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.8e-23 Score=138.25 Aligned_cols=75 Identities=36% Similarity=0.521 Sum_probs=69.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
++++||||||||+.|||||+.+|++++||||+++||.-+++.+.+.+.+++++.|+.++++||+++++.- +++++
T Consensus 129 ~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLv 204 (259)
T COG4525 129 YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLV 204 (259)
T ss_pred ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeE
Confidence 4679999999999999999999999999999999999999999999999999999999999999999865 66654
No 292
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.89 E-value=6.4e-23 Score=153.67 Aligned_cols=72 Identities=36% Similarity=0.601 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+. + ++|+|++||+++.+..+|+++.
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~-~~T~IiitHr~~~~~~~D~i~~ 680 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--Q-DKTIIFVAHRLSVAKQSDKIIV 680 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--c-CCEEEEEecchHHHHcCCEEEE
Confidence 4679999999999999999999999999999999999999999999874 2 6899999999999988999764
No 293
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.89 E-value=6.2e-23 Score=150.25 Aligned_cols=73 Identities=26% Similarity=0.460 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+++.+.+.. + ++|+|++||+++....+|+++.
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~-~~t~IiitH~~~~~~~~d~vi~ 546 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-K-GRTTLIIAHRLATVLKADRIVV 546 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-C-CCEEEEEecchHHHHhCCEEEE
Confidence 35799999999999999999999999999999999999999999999874 3 7999999999999888998754
No 294
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=5.5e-23 Score=163.63 Aligned_cols=75 Identities=31% Similarity=0.522 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|.+.....++|+|+|||.+..++.+|+|+.
T Consensus 1356 G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivv 1430 (1466)
T PTZ00265 1356 GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEE
Confidence 467999999999999999999999999999999999999999999988742347999999999999999999764
No 295
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=7.2e-23 Score=153.23 Aligned_cols=73 Identities=32% Similarity=0.485 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+..+|+++.
T Consensus 591 g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~ii~ 663 (694)
T TIGR01846 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTVRACDRIIV 663 (694)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHHHhCCEEEE
Confidence 46899999999999999999999999999999999999999999999873 37899999999999988998764
No 296
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=1.2e-22 Score=139.66 Aligned_cols=73 Identities=30% Similarity=0.474 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL-VQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l-~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||++|||+|+.+|+++||||||+|||+.++..+.+.+ .++ .+ +.|||++||+++++..+|+++.
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-~~-~~tIiiisH~~~~~~~~d~i~~ 230 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-MA-NKTRILVTSKMEHLKKADKILI 230 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh-hC-CCEEEEEeCChHHHHhCCEEEE
Confidence 3689999999999999999999999999999999999999998765 444 33 6899999999999877888653
No 297
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=7.2e-23 Score=151.97 Aligned_cols=73 Identities=26% Similarity=0.366 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||+||+.+|+++||||||++||+..+..+.+.+.++. + |.|||++||+++++.. +|+++.
T Consensus 210 ~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIivsHd~~~l~~~~D~v~v 283 (590)
T PRK13409 210 ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVVEHDLAVLDYLADNVHI 283 (590)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 57899999999999999999999999999999999999999999999985 4 8999999999999876 787654
No 298
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=3.2e-23 Score=141.26 Aligned_cols=73 Identities=29% Similarity=0.590 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||.|++||+.+..+++++|+++|||||||||||.+.+.+.+.+.++. +.|.|||++||.|+.++. ||+++
T Consensus 128 Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk-~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 128 IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK-EEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH-hcCCEEEEecchHHHHHHHhhhhh
Confidence 56899999999999999999999999999999999999999999999985 569999999999999987 88764
No 299
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=7e-23 Score=163.01 Aligned_cols=75 Identities=29% Similarity=0.467 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|.++.++.|+|+|++||++..+..+|+++.
T Consensus 577 g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iiv 651 (1466)
T PTZ00265 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFV 651 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999998865458999999999999988998764
No 300
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=1.5e-22 Score=136.12 Aligned_cols=74 Identities=30% Similarity=0.513 Sum_probs=69.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
.++|||||||.++|||||+.+|++++||||+.||-|...+++++.+++++++.|.||++|.+|...+.. +|+.+
T Consensus 134 aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~y 208 (237)
T COG0410 134 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY 208 (237)
T ss_pred ccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEE
Confidence 478999999999999999999999999999999999999999999999987778999999999999876 78754
No 301
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=4.8e-23 Score=148.00 Aligned_cols=76 Identities=32% Similarity=0.483 Sum_probs=72.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.|.+|||||||||.||.||+++|+++|.||||++||...+.+++++|+++.++.|.+++++|||+..+.. +|++..
T Consensus 154 yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 154 YPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred CCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence 3789999999999999999999999999999999999999999999999988889999999999999987 888764
No 302
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.6e-23 Score=152.66 Aligned_cols=71 Identities=25% Similarity=0.426 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|.++ .| |||+||||+.++.. +|+++.
T Consensus 428 ~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~~~~~~~d~i~~ 499 (638)
T PRK10636 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRHLLRSTTDDLYL 499 (638)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999876 24 99999999999876 787653
No 303
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.89 E-value=8.6e-23 Score=149.81 Aligned_cols=73 Identities=30% Similarity=0.509 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+..||||||||++||||++++|++++|||||+++|+.+...+.+.+.+.. + ++|+++++|.+..+..+|+++.
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~-~rT~iiIaHRlsti~~aD~IiV 535 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-K-GRTTLIIAHRLSTIKNADRIIV 535 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-c-CCEEEEEeccHhHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999999775 3 5799999999999999999764
No 304
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.88 E-value=9.1e-23 Score=149.74 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||+|||+.+++.+.+.|.++ . + |||++|||++++.. +|+++.
T Consensus 441 ~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-~-~viivsHd~~~~~~~~d~i~~ 512 (552)
T TIGR03719 441 VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--A-G-CAVVISHDRWFLDRIATHILA 512 (552)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--C-C-eEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999876 2 4 89999999999876 788653
No 305
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.88 E-value=1.5e-22 Score=132.89 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+|||||++||++++ .+|++++|||||+|||+.....+.+.+.++.+ +.|||++||+++++..+|+++.
T Consensus 111 ~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~~~~~~d~v~~ 187 (197)
T cd03278 111 LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVITHRKGTMEAADRLYG 187 (197)
T ss_pred hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHhhcceEEE
Confidence 5789999999999999997 46799999999999999999999999998743 5899999999998877888764
No 306
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=7.7e-23 Score=133.52 Aligned_cols=73 Identities=38% Similarity=0.628 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
|-.|||||+|||+|||||+.+|+++++||||++|||.-..++.++++++. +.|.|-+++||..+.++. +.+++
T Consensus 139 plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~-~tgitqvivthev~va~k~as~vv 212 (242)
T COG4161 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEVEVARKTASRVV 212 (242)
T ss_pred ceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeehhHHHhhhhheE
Confidence 45799999999999999999999999999999999999999999999985 569999999999999876 55553
No 307
>KOG0055|consensus
Probab=99.88 E-value=7.3e-23 Score=159.60 Aligned_cols=73 Identities=27% Similarity=0.485 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
..+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.+.. .|+|.|+|+|++..++.+|+++.
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStIrnaD~I~v 559 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLSTIRNADKIAV 559 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhhhccCEEEE
Confidence 45799999999999999999999999999999999999999999998764 38899999999999999998764
No 308
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.88 E-value=7.4e-23 Score=147.02 Aligned_cols=76 Identities=29% Similarity=0.494 Sum_probs=71.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.|.++|||||||++||||++.+|++++||||||+||...+.++.++|+++.++.|.+.+|+|||+..++. ||+++.
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viV 499 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIV 499 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEE
Confidence 3789999999999999999999999999999999999999999999999988889999999999999986 787764
No 309
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=1e-22 Score=149.67 Aligned_cols=71 Identities=28% Similarity=0.364 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||+|+.+|+++||||||++||+.++..+.+.|.++ +.|||++||+++++.. +|+++.
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~~~~~d~i~~ 232 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFLDNVAGWILE 232 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEE
Confidence 5689999999999999999999999999999999999999999988875 2499999999999876 777653
No 310
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=151.66 Aligned_cols=71 Identities=27% Similarity=0.302 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||+.++.. +|+++.
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~ 218 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIH 218 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEE
Confidence 5689999999999999999999999999999999999999998888764 4699999999999876 787654
No 311
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.88 E-value=1.3e-22 Score=151.16 Aligned_cols=71 Identities=28% Similarity=0.393 Sum_probs=64.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||+|+.+|+++||||||++||+.++..+.+.|.++ +.|||+||||..++.. +|+++.
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~ 225 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVD 225 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEE
Confidence 5789999999999999999999999999999999999999999998876 2499999999999876 787754
No 312
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.88 E-value=1.9e-22 Score=133.36 Aligned_cols=73 Identities=18% Similarity=0.123 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.||+|||||++||||++.+|+++|||||++++|+.++..+.+.+.+..+ +.|+|++||++.++.. +|+++.
T Consensus 102 ~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~ 175 (213)
T PRK15177 102 VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHNPRLIKEHCHAFGV 175 (213)
T ss_pred HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECCHHHHHHhcCeeEE
Confidence 568999999999999999999999999999999999999999998866544 3579999999999875 787653
No 313
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=2e-22 Score=148.18 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=64.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++ . | |||++|||++++.. +|+++.
T Consensus 443 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-~-tvi~vtHd~~~~~~~~d~i~~ 514 (556)
T PRK11819 443 VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--P-G-CAVVISHDRWFLDRIATHILA 514 (556)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--C-C-eEEEEECCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999876 2 4 89999999999876 788653
No 314
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=1.9e-22 Score=163.90 Aligned_cols=73 Identities=37% Similarity=0.722 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+++||||||||+++|+||+.+|++++|||||+||||.+++.+++.+.++.++ |+|||++||++++++. ||+++
T Consensus 2068 ~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~ 2141 (2272)
T TIGR01257 2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLA 2141 (2272)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 5789999999999999999999999999999999999999999999998654 8999999999999986 88864
No 315
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.88 E-value=2e-22 Score=151.54 Aligned_cols=71 Identities=28% Similarity=0.455 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+ .. ...++|+|++||+++.+..+|+++.
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl~~i~~aD~Iiv 685 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRLSTVERADQILV 685 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccHHHHHhCCEEEE
Confidence 45799999999999999999999999999999999999888887 22 2247899999999999988999764
No 316
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.88 E-value=1.9e-22 Score=148.03 Aligned_cols=71 Identities=30% Similarity=0.396 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+++||||||++||+.++..+.+.|.++ +.|||++||+++++.. +|+++.
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~ 230 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILE 230 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEE
Confidence 5689999999999999999999999999999999999999999988765 2499999999999876 787653
No 317
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=2.3e-22 Score=133.88 Aligned_cols=73 Identities=34% Similarity=0.554 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
..+||||||+|+.|||||+.+|++++|||||+|+||.+...+.+++..+. +.|..|+++-||..+... +||.+
T Consensus 137 a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHNVREtL~i~dRaY 210 (243)
T COG1137 137 AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHNVRETLDICDRAY 210 (243)
T ss_pred ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceEEEccccHHHHHhhhheEE
Confidence 35899999999999999999999999999999999999999999999885 459999999999988765 88764
No 318
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-22 Score=147.89 Aligned_cols=73 Identities=33% Similarity=0.586 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+..|||||+||++|||+|+++.+++||||||.|||+.+.+++++.+.+.++ |+|+|++||++..++.+|+|+.
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIiv 544 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIV 544 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEE
Confidence 468999999999999999999999999999999999999999999998754 7999999999999999999654
No 319
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.87 E-value=2.3e-22 Score=146.32 Aligned_cols=62 Identities=32% Similarity=0.532 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+.. .++|+|++||++
T Consensus 468 G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 468 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 45799999999999999999999999999999999999999999998763 378999999974
No 320
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=3.1e-22 Score=149.11 Aligned_cols=71 Identities=24% Similarity=0.271 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||++|+.+|++|||||||+|||+.+++.+.+.+.++ +.|||+||||..++.. +|+++.
T Consensus 438 ~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~ 509 (635)
T PRK11147 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWI 509 (635)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEE
Confidence 5789999999999999999999999999999999999999999888765 3499999999999876 777653
No 321
>PLN03211 ABC transporter G-25; Provisional
Probab=99.87 E-value=3e-22 Score=150.11 Aligned_cols=74 Identities=30% Similarity=0.448 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HH-Hhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE-EA-RQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~-~~-~~~d~i~~ 76 (79)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++++ .|+|||++||++. .+ ..+|+++.
T Consensus 204 ~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iil 279 (659)
T PLN03211 204 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLV 279 (659)
T ss_pred CCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEE
Confidence 457999999999999999999999999999999999999999999999875 4899999999987 34 44788753
No 322
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.87 E-value=3.8e-22 Score=149.36 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
.+||||||||++||||++++|+++||||||++||+...+.+.+.+.+ .|.|+|++||+++.+..+|+++.
T Consensus 581 ~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~~~~d~il~ 650 (659)
T TIGR00954 581 DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWKYHEYLLY 650 (659)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHHHhCCEEEE
Confidence 68999999999999999999999999999999999999999887764 27899999999999888998764
No 323
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=3.6e-22 Score=162.38 Aligned_cols=73 Identities=38% Similarity=0.710 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||+||+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++.. +|+++.
T Consensus 1059 ~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~-g~TIIltTHdmdea~~laDrI~i 1132 (2272)
T TIGR01257 1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RS-GRTIIMSTHHMDEADLLGDRIAI 1132 (2272)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hC-CCEEEEEECCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998 44 8999999999999976 888653
No 324
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.87 E-value=6e-22 Score=130.53 Aligned_cols=75 Identities=23% Similarity=0.250 Sum_probs=67.5
Q ss_pred CCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 2 EISSRGGQQRR------VSFAVALMHDPELLILDEPTVGVDPLLRQ-SIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqr------v~laral~~~p~~lllDEP~~glD~~~~~-~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
+.+||+||+|| ++++++++.+|+++++||||++||+..+. .+.+.+.++.++.|.|+|++||+++.+..+|++
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i 192 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHI 192 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEE
Confidence 57899999996 78999999999999999999999999999 999999988655478999999999988778887
Q ss_pred ec
Q psy5634 75 ID 76 (79)
Q Consensus 75 ~~ 76 (79)
+.
T Consensus 193 ~~ 194 (204)
T cd03240 193 YR 194 (204)
T ss_pred EE
Confidence 63
No 325
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=5e-22 Score=130.48 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=66.2
Q ss_pred CCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEecCHHHHHhhcce
Q psy5634 1 MEISSRGGQQRRVSFAVAL----MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD--GNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral----~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~--~g~tvi~~tH~~~~~~~~d~i 74 (79)
++++||+|||||++||+++ +.+|+++||||||+|+|+..+..+.+.|.+..++ .+.||+++||+++.+...|+|
T Consensus 106 ~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v 185 (198)
T cd03276 106 DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDV 185 (198)
T ss_pred cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccce
Confidence 3678999999999999999 5899999999999999999999999999987654 346899999999999887775
No 326
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.87 E-value=1.4e-21 Score=129.05 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-
Q psy5634 2 EISSRGGQQRRVSFAVALMH----------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ- 70 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~----------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~- 70 (79)
+.+||+||+||+++|||++. +|+++|+||||++||+..+..+.+.+.++.++ +.|+|++||+++++..
T Consensus 121 ~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~~~~~~ 199 (213)
T cd03279 121 VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEELKERI 199 (213)
T ss_pred ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchHHHHhh
Confidence 56899999999999999985 57899999999999999999999999988544 8899999999998877
Q ss_pred hccee
Q psy5634 71 AHTVI 75 (79)
Q Consensus 71 ~d~i~ 75 (79)
+++++
T Consensus 200 ~~~i~ 204 (213)
T cd03279 200 PQRLE 204 (213)
T ss_pred CcEEE
Confidence 45543
No 327
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=8.4e-22 Score=148.93 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=63.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||+++.+|+++||||||+|||+.+++.+.+.+.++ .| |||++|||+.++.. +|+++.
T Consensus 625 ~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~i~~~~drv~~ 696 (718)
T PLN03073 625 MYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHLISGSVDELWV 696 (718)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHHHHHhCCEEEE
Confidence 6789999999999999999999999999999999999999988877654 24 99999999999976 787653
No 328
>KOG0058|consensus
Probab=99.86 E-value=5.2e-22 Score=148.76 Aligned_cols=73 Identities=29% Similarity=0.495 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||+||||||++||.++||||.||+||..+...+.+.+.+..+ ++|||++.|.+..++.+|+|+.
T Consensus 602 G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~Ad~Ivv 674 (716)
T KOG0058|consen 602 GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRHADQIVV 674 (716)
T ss_pred cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhhccEEEE
Confidence 468999999999999999999999999999999999999999999988754 5899999999999999998753
No 329
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=1.8e-21 Score=130.97 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+.+||+|||||+++|++++ .+|+++++||||++||+..++.+.+.+.++. + |.|+|++||+.+....+|+++
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHHhCCEEE
Confidence 5789999999999999998 5789999999999999999999999999874 3 789999999987777789875
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=99.86 E-value=1.1e-21 Score=148.26 Aligned_cols=71 Identities=30% Similarity=0.389 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++||++|+.+|+++||||||++||+.++..+.+.|.++ +.|+|++||+.+++.. +|+++.
T Consensus 342 ~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 342 TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999988765 5799999999999876 787653
No 331
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=145.66 Aligned_cols=74 Identities=39% Similarity=0.481 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++.+..+|+++.
T Consensus 142 ~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~~~~~d~i~~ 215 (648)
T PRK10535 142 PSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVAAQAERVIE 215 (648)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999998864 48999999999998877888753
No 332
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=1.4e-21 Score=131.50 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHD----PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~----p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
.+||+|||||++||++++.+ |+++||||||+|||+..+..+.+.+.+++++ |.++|++||+.+....+|+++.
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~~~~d~i~~ 230 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFFSKADALVG 230 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHHhhCCeEEE
Confidence 68999999999999999864 8999999999999999999999999998644 8899999999888877998764
No 333
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=3e-21 Score=128.62 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||+++. +|+++|+||||+|||+..++.+++.+.++.+ +.++|++||..+....+|+++.
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~~~~~~d~i~~ 232 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPELLEVADKFYG 232 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHhhCCEEEE
Confidence 46899999999999999973 5899999999999999999999999998743 6889999999776666888753
No 334
>PLN03232 ABC transporter C family member; Provisional
Probab=99.86 E-value=1.6e-21 Score=155.49 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+++.. .++|+|+|+|+++.+..+|+|+.
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlV 1441 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIIDCDKILV 1441 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHhCCEEEE
Confidence 45899999999999999999999999999999999999999999998764 37999999999999999999864
No 335
>KOG0055|consensus
Probab=99.85 E-value=1.6e-21 Score=152.27 Aligned_cols=74 Identities=24% Similarity=0.446 Sum_probs=67.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
++.+||||||||+|||||+++||++|||||.||+||.++.+.+.+.|.+.. .|+|+|++.|.+..+..+|.|..
T Consensus 1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqnaD~I~V 1196 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQNADVIAV 1196 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhcCCEEEE
Confidence 356899999999999999999999999999999999999999999998763 38999999999999999998753
No 336
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=4.1e-21 Score=148.12 Aligned_cols=74 Identities=30% Similarity=0.430 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||+||+.||++|+.+| +++||||||+|||+.....+.+.|.++.+ .|.|||+|+|+++++..+|+++.
T Consensus 485 ~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 485 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHhhCCEEEE
Confidence 5789999999999999999986 89999999999999999999999999865 48999999999999888898764
No 337
>PLN03130 ABC transporter C family member; Provisional
Probab=99.85 E-value=3.4e-21 Score=154.45 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||+++|..+.+.+.+.+++.. .++|+|+++|.++.+..+|+|+.
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~~DrIlV 1444 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILV 1444 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHhCCEEEE
Confidence 45899999999999999999999999999999999999999999999874 37999999999999999999864
No 338
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.85 E-value=4.9e-21 Score=139.90 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=69.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||.||||.|+||||+..+++++||||||+.|+....+.++++++++. +.|.++||+||.++++.. ||++..
T Consensus 143 v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~Ei~~i~DritV 217 (500)
T COG1129 143 VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLDEVFEIADRITV 217 (500)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHhcCEEEE
Confidence 67899999999999999999999999999999999999999999999985 569999999999999987 888754
No 339
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.85 E-value=4.3e-21 Score=148.24 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||+||+.||++|+.+| +++||||||+|||+.....+++.|.++.+ .|.|||+|+|+++++..+|+++.
T Consensus 487 ~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 487 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence 5689999999999999999997 99999999999999999999999999854 58999999999999888898764
No 340
>KOG0057|consensus
Probab=99.85 E-value=2.7e-21 Score=141.93 Aligned_cols=74 Identities=27% Similarity=0.475 Sum_probs=68.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
++..|||||||||+++||++.+|+++++||||++||..+.+++++.+.+. ..++|+|++-|++..+..+|+|+.
T Consensus 484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l~ll~~~DkI~~ 557 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRLDLLKDFDKIIV 557 (591)
T ss_pred cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecchhHhcCCEEEE
Confidence 35679999999999999999999999999999999999999999999984 348999999999999999999864
No 341
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.85 E-value=4.4e-21 Score=153.12 Aligned_cols=73 Identities=26% Similarity=0.268 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||+++|+.+...+.+.+++.. .++|+|+|+|+++.+..+|+|+.
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~~DrIlV 1491 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMDYTRVIV 1491 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEE
Confidence 46899999999999999999999999999999999999999999998764 37899999999999999999864
No 342
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.85 E-value=5e-21 Score=142.36 Aligned_cols=72 Identities=35% Similarity=0.560 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HH-Hhhccee
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE-EA-RQAHTVI 75 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~-~~-~~~d~i~ 75 (79)
+.||||||||++||++|+.+|++++|||||+|||+.+...+++.+++++++ |.|+|+++|++. .+ ..+|+++
T Consensus 165 ~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ 238 (617)
T TIGR00955 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKII 238 (617)
T ss_pred CCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEE
Confidence 479999999999999999999999999999999999999999999998754 899999999984 44 5588865
No 343
>PLN03232 ABC transporter C family member; Provisional
Probab=99.84 E-value=5.5e-21 Score=152.42 Aligned_cols=73 Identities=22% Similarity=0.398 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||+.++|+++||||||++||+.+.+.+++. +.... .++|+|++||++..+..+|+++.
T Consensus 738 G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~~aD~Ii~ 811 (1495)
T PLN03232 738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLPLMDRIIL 811 (1495)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHHhCCEEEE
Confidence 457999999999999999999999999999999999999988765 44332 37899999999999888998764
No 344
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.84 E-value=3.8e-21 Score=141.60 Aligned_cols=70 Identities=34% Similarity=0.420 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||||||.||+||++|..+|++|||||||++||..+..-+-+.|.++ .| |+|+||||..+... |.+|+
T Consensus 151 ~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 151 VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheE
Confidence 4689999999999999999999999999999999999999888887754 36 99999999999987 44443
No 345
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=6.2e-21 Score=124.72 Aligned_cols=77 Identities=27% Similarity=0.389 Sum_probs=70.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH-HhhcceecC
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA-RQAHTVIDN 77 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~-~~~d~i~~~ 77 (79)
++.+||||||||++|+|-|...|++++|||||++||+.+++.+-+++.++.++...+++.+|||.+.+ ..+|+++.-
T Consensus 130 ~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl 207 (223)
T COG4619 130 NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITL 207 (223)
T ss_pred hhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEe
Confidence 35689999999999999999999999999999999999999999999999887889999999999985 458887754
No 346
>PLN03140 ABC transporter G family member; Provisional
Probab=99.84 E-value=7.2e-21 Score=151.69 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH-H-Hhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE-A-RQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~-~-~~~d~i~~ 76 (79)
+.||||||||++||++|+.+|++++|||||+|||+.++..+++.+++++++ |.|||+++|+++. + ..+|+++.
T Consensus 1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vll 1092 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLL 1092 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEE
Confidence 589999999999999999999999999999999999999999999998754 8999999999973 3 45787653
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.84 E-value=5.5e-21 Score=151.79 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH-HHHH-hhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI-EEAR-QAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~-~~~~-~~d~i~~ 76 (79)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|+|+++|++ +.+. .+|+++.
T Consensus 207 ~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~ 283 (1394)
T TIGR00956 207 VRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIV 283 (1394)
T ss_pred CCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Confidence 4679999999999999999999999999999999999999999999999766689999999996 4554 4888754
No 348
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.84 E-value=9.1e-21 Score=151.17 Aligned_cols=73 Identities=32% Similarity=0.533 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||++||+...+.+++. +..+. + |+|+|++||+++.+..+|+++.
T Consensus 546 g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~-~~tvilvtH~~~~~~~ad~ii~ 619 (1490)
T TIGR01271 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-S-NKTRILVTSKLEHLKKADKILL 619 (1490)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCChHHHHhCCEEEE
Confidence 468999999999999999999999999999999999999999974 55553 3 7999999999999888998764
No 349
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.84 E-value=1.2e-20 Score=150.46 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||+++|+.+...+.+.|++.. .++|||+++|.++.+..+|+|+.
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlv 1423 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLV 1423 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEE
Confidence 35799999999999999999999999999999999999999999998864 36999999999999999999764
No 350
>PTZ00243 ABC transporter; Provisional
Probab=99.84 E-value=1.2e-20 Score=151.07 Aligned_cols=73 Identities=25% Similarity=0.360 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHD-PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~-p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++ |++|||||||++||+.+.+.+.+.|.+..+ ++|+|+|+|+++.+..+|+|+.
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~~DrIlV 1516 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS--AYTVITIAHRLHTVAQYDKIIV 1516 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC--CCEEEEEeccHHHHHhCCEEEE
Confidence 468999999999999999995 899999999999999999999999987643 6899999999999999999864
No 351
>PLN03130 ABC transporter C family member; Provisional
Probab=99.83 E-value=1.5e-20 Score=150.78 Aligned_cols=73 Identities=23% Similarity=0.414 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||+.++|+++||||||++||+...+.+++ .+.... .++|+|++||++..+..+|+++.
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~~aD~Ii~ 811 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLSQVDRIIL 811 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHHhCCEEEE
Confidence 45799999999999999999999999999999999999888765 455443 37999999999999989998764
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.83 E-value=1.3e-20 Score=150.50 Aligned_cols=75 Identities=31% Similarity=0.469 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT-KDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~-~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||+..+|+++||||||++||+...+.+++.+.+.. ...++|+|++||+++.+..+|+++.
T Consensus 758 g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~ 833 (1522)
T TIGR00957 758 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV 833 (1522)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEE
Confidence 56899999999999999999999999999999999999999999886531 1237899999999999988998764
No 353
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.83 E-value=1.1e-20 Score=138.02 Aligned_cols=74 Identities=27% Similarity=0.458 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||.||||.|||.|+.+|++|||||||.|+|..++.++++++.+++++ |.+||++|.+++++.. ||||+.
T Consensus 399 v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlV 473 (500)
T COG1129 399 IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILV 473 (500)
T ss_pred hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEE
Confidence 5789999999999999999999999999999999999999999999999865 9999999999999875 999864
No 354
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.9e-20 Score=127.03 Aligned_cols=68 Identities=43% Similarity=0.630 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecCHHHHHh
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTHYIEEARQ 70 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-~g~tvi~~tH~~~~~~~ 70 (79)
.+||-|||||+.|||||+.+|+++||||||+|||...++.+.+.|.+++.. .+.++|+|||+.+++-.
T Consensus 170 ~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~ 238 (257)
T COG1119 170 GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP 238 (257)
T ss_pred hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccc
Confidence 579999999999999999999999999999999999999999999998643 47899999999998865
No 355
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.83 E-value=3.4e-20 Score=143.29 Aligned_cols=74 Identities=28% Similarity=0.439 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||+||+.||++|+.+| +++||||||+|||+..+..+++.|.++.+ .|.|||++||+++++..+|+++.
T Consensus 828 ~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~i~~aD~ii~ 904 (943)
T PRK00349 828 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDVIKTADWIID 904 (943)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEE
Confidence 5689999999999999999999 99999999999999999999999999864 48999999999999988888765
No 356
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=1.9e-20 Score=129.16 Aligned_cols=75 Identities=33% Similarity=0.509 Sum_probs=70.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+++.||-|||.|+.||.+|+++|++++|||||-|||...+..+.+.+++++++.+.||+++||+++.+.. |++++
T Consensus 153 ~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~ 228 (325)
T COG4586 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228 (325)
T ss_pred hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheE
Confidence 3578999999999999999999999999999999999999999999999998889999999999998876 88764
No 357
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=3.8e-20 Score=122.70 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+..||+|||||++||+|++. +|+++++||||+|||+.++..+.+.+.++. + +.|+|++||+.+....+|+++.
T Consensus 125 ~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~-~~~~iivs~~~~~~~~~d~v~~ 201 (212)
T cd03274 125 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-K-NAQFIVISLRNNMFELADRLVG 201 (212)
T ss_pred hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECcHHHHHhCCEEEE
Confidence 46899999999999999974 579999999999999999999999999874 3 5789999999776667998764
No 358
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=7.9e-21 Score=126.60 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
.+||||||||..+|..++++.++++||||.++||.+-.-.+++.+++++++.|+||++|-||++++.. +|.++
T Consensus 134 d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IV 207 (252)
T COG4604 134 DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIV 207 (252)
T ss_pred HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhhee
Confidence 47999999999999999999999999999999999999999999999999999999999999999986 67765
No 359
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.83 E-value=2.4e-20 Score=148.18 Aligned_cols=71 Identities=25% Similarity=0.423 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH--Hhhccee
Q psy5634 4 SSRGGQQRRVSFAVALMHDPE-LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA--RQAHTVI 75 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~-~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~--~~~d~i~ 75 (79)
+||||||||++||++|+.+|+ +++|||||+|||+.++..+++.|+++++ .|.|||+++|+++.. ..+|+++
T Consensus 901 ~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl 974 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLL 974 (1394)
T ss_pred CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEE
Confidence 799999999999999999997 9999999999999999999999999865 489999999999853 4578765
No 360
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.83 E-value=7.3e-20 Score=118.70 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 4 SSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 4 ~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
-||+||+||+++||+++ .+|+++++|||++++|+.....+.+.+.++.+. |.++|++||+.+.+..+|+++.
T Consensus 94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~~adrvi~ 169 (178)
T cd03239 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFENADKLIG 169 (178)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHhhCCeEEE
Confidence 38999999999999996 689999999999999999999999999988654 7899999999998888888754
No 361
>PTZ00243 ABC transporter; Provisional
Probab=99.83 E-value=3.4e-20 Score=148.40 Aligned_cols=74 Identities=24% Similarity=0.392 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||++.+|+++||||||++||+...+.+++.+..... .|+|+|++||+++.+..+|+++.
T Consensus 780 g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~~ad~ii~ 853 (1560)
T PTZ00243 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVVPRADYVVA 853 (1560)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999998888765432222 37999999999999988898754
No 362
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=5.9e-20 Score=121.16 Aligned_cols=74 Identities=30% Similarity=0.475 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
|.++||||+||+.|||-|+..|+++++||||.|||...+..++++++.+.++.|.+++++|||+..+.- +++..
T Consensus 149 PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlm 223 (258)
T COG4107 149 PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLM 223 (258)
T ss_pred ccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcce
Confidence 678999999999999999999999999999999999999999999999999999999999999998865 66643
No 363
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.82 E-value=6e-20 Score=133.44 Aligned_cols=72 Identities=33% Similarity=0.455 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
+.+||-|+||||.|.++|.++|++|||||||+-|.|...+++++.++++.+ .|+|||++||.++++.. +|++
T Consensus 138 V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrv 210 (501)
T COG3845 138 VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLKEVMAIADRV 210 (501)
T ss_pred eecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhhCee
Confidence 578999999999999999999999999999999999999999999999865 59999999999999987 8875
No 364
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=9.1e-20 Score=140.71 Aligned_cols=74 Identities=27% Similarity=0.438 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMH---DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~---~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||+||++||++|+. +|+++||||||+|||+..+..+.+.|.++.+ .|.|||++||+++++..+|+++.
T Consensus 826 ~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~i~~aD~ii~ 902 (924)
T TIGR00630 826 ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDVIKTADYIID 902 (924)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence 46899999999999999997 5999999999999999999999999999864 48999999999999988898765
No 365
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=7.8e-20 Score=147.07 Aligned_cols=74 Identities=27% Similarity=0.415 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||+||+.||++|+.+| +++||||||+|||+..++.+.+.|+++.++ |.|||+|||+++....+|+++.
T Consensus 474 ~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~-G~TVIvVeHd~~vi~~aDrVi~ 549 (1809)
T PRK00635 474 LATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQ-GNTVLLVEHDEQMISLADRIID 549 (1809)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHhCCEEEE
Confidence 4689999999999999999999 899999999999999999999999998654 8999999999997766898764
No 366
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=9.9e-20 Score=146.50 Aligned_cols=74 Identities=30% Similarity=0.465 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALM---HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~---~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||+||++||++|+ .+|+++||||||+|||+...+.+++.|.++.+ .|.|||++||+++++..+|+++.
T Consensus 807 ~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~i~~aDrVi~ 883 (1809)
T PRK00635 807 LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVVKVADYVLE 883 (1809)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEE
Confidence 4689999999999999998 69999999999999999999999999999865 48999999999999966888764
No 367
>PLN03140 ABC transporter G family member; Provisional
Probab=99.80 E-value=4.8e-20 Score=147.01 Aligned_cols=75 Identities=24% Similarity=0.250 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH-HHHH-hhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI-EEAR-QAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~-~~~~-~~d~i~~ 76 (79)
++.|||||||||+||++|+.+|++++|||||+|||+.+..++.+.|+++++..|.|+|+++|++ +++. .+|+++.
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vil 410 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIIL 410 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEE
Confidence 4689999999999999999999999999999999999999999999999766689999999986 3544 4888754
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.80 E-value=1.9e-19 Score=132.63 Aligned_cols=70 Identities=27% Similarity=0.351 Sum_probs=63.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+..||||||.|+.+|+.++.+|.+|||||||+.||..+.+.+.+.|.++ ..|||+||||..++.. +.+++
T Consensus 437 v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~ 507 (530)
T COG0488 437 VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIW 507 (530)
T ss_pred hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEE
Confidence 5689999999999999999999999999999999999999999988876 3499999999999987 66654
No 369
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.80 E-value=5e-19 Score=112.74 Aligned_cols=71 Identities=30% Similarity=0.366 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 4 SSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+||+||+||++++++|+. +|+++++|||++|+|+..+..+.+.+.++.++ |.++|++||+.+....+|+++
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~ 151 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLI 151 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEE
Confidence 589999999999999987 78999999999999999999999999988666 889999999999988888865
No 370
>KOG0059|consensus
Probab=99.79 E-value=3.2e-19 Score=137.18 Aligned_cols=72 Identities=39% Similarity=0.798 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
++.||||+|+|+++|.|++.+|++++|||||+|+||.+++.+++++.+..++ |+++|++||.+++++. |+|+
T Consensus 696 ~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 696 VRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRT 768 (885)
T ss_pred hhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhh
Confidence 5789999999999999999999999999999999999999999999998654 5599999999999987 7874
No 371
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.9e-19 Score=118.91 Aligned_cols=73 Identities=27% Similarity=0.379 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 3 ISSRGGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
.+|||||||||.+||.|++ ++++++|||||++||..-+..+++..++++++ |..|+.|-||++.+.. +|+++
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDriv 212 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIV 212 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheee
Confidence 4799999999999999986 44689999999999999999999999999876 6899999999999875 89876
Q ss_pred c
Q psy5634 76 D 76 (79)
Q Consensus 76 ~ 76 (79)
-
T Consensus 213 l 213 (259)
T COG4559 213 L 213 (259)
T ss_pred e
Confidence 3
No 372
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.78 E-value=4.1e-19 Score=117.93 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEecCHHHHHh-hcc
Q psy5634 2 EISSRGGQQRRVSFAVAL----MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGN-KTVIITTHYIEEARQ-AHT 73 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral----~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH~~~~~~~-~d~ 73 (79)
+.+||+||||++.+++++ +.+|+++++||||+|||+..+..+++.+.+..++.| .|+|++||++..... +|+
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~ 201 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEK 201 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCc
Confidence 578999999998877554 589999999999999999999999999999865524 689999999866543 554
No 373
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.78 E-value=7.9e-19 Score=128.48 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+..||||||||+++||||..+|.+++||||-++||......+.+.+.... ..|.|+|++||.+.....+|++..
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHRPs~L~~~Dkilv 543 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRPSALASVDKILV 543 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecCHHHHhhcceeee
Confidence 35799999999999999999999999999999999999999999999885 458999999999999999999764
No 374
>KOG0062|consensus
Probab=99.78 E-value=2.9e-19 Score=130.80 Aligned_cols=65 Identities=32% Similarity=0.368 Sum_probs=58.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
.++||||||.|++|||||..+||+|||||||+.||..+..-+-+.|..+ +.|+|+||||..+...
T Consensus 196 t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 196 TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNFLNT 260 (582)
T ss_pred ccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHHHHH
Confidence 4689999999999999999999999999999999999887776666543 5799999999998876
No 375
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2e-18 Score=117.94 Aligned_cols=70 Identities=23% Similarity=0.341 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 4 SSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
.||+||+||+++|++++. +|+++++|||+++||+.....+.+.+.+..+ +.|+|++||++.....+|+++
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~~~~d~~~ 243 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVAAMADNHF 243 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHHHhcCcEE
Confidence 599999999999987654 9999999999999999999999999998753 689999999998776688764
No 376
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=4.6e-19 Score=114.60 Aligned_cols=75 Identities=27% Similarity=0.440 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
|.+||||||-||++-|+|+..|+.++|||||+.||...+.++.+.+.+..+..|..+++||||.+.+....++++
T Consensus 132 P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie 206 (213)
T COG4136 132 PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIE 206 (213)
T ss_pred hhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeee
Confidence 568999999999999999999999999999999999999999998888778889999999999998876667664
No 377
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=2.2e-18 Score=115.97 Aligned_cols=74 Identities=28% Similarity=0.464 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.-|||||||-++++.|.+++|++++|||.|++|||.....+++.=.++.++.+.|.+||||+++.+-. .+|.+
T Consensus 146 iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlI 220 (263)
T COG1101 146 IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLI 220 (263)
T ss_pred hhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEE
Confidence 456999999999999999999999999999999999999999999888888889999999999998865 55544
No 378
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.76 E-value=4.5e-18 Score=125.72 Aligned_cols=71 Identities=30% Similarity=0.390 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 3 ISSRGGQQRRVSFAVALMHD----PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~----p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
..|||||+||++||++++.. |+++|||||++|+|+.....+.+.+.++. + +.+||++||++..+..+|+++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~~~~~~ad~~~ 513 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLPQVAAHADAHF 513 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChHHHHHhcCeEE
Confidence 46899999999999999985 69999999999999999999999999985 3 789999999999888788865
No 379
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.75 E-value=2.6e-18 Score=125.53 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=63.6
Q ss_pred CCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 2 EISSRGGQQRRVSFAVALM----------HDPELLILDEPT-VGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~----------~~p~~lllDEP~-~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
+.+|||||+||++||++|+ .+|+++|||||| ++||+.....+.+.+.++ . |.|||++||+......
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~-~~~iiiish~~~~~~~ 542 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--K-DTNVFVISHKDHDPQK 542 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--C-CCeEEEEECchhchhh
Confidence 4689999999999999988 599999999998 789999999999999887 2 7899999999877777
Q ss_pred hcceec
Q psy5634 71 AHTVID 76 (79)
Q Consensus 71 ~d~i~~ 76 (79)
+|+++.
T Consensus 543 ~d~~~~ 548 (562)
T PHA02562 543 FDRHLK 548 (562)
T ss_pred hhcEEE
Confidence 887653
No 380
>KOG0061|consensus
Probab=99.75 E-value=2.6e-18 Score=128.31 Aligned_cols=72 Identities=32% Similarity=0.518 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH--HHHhhccee
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE--EARQAHTVI 75 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~--~~~~~d~i~ 75 (79)
+.+||||||||+||.-|+.+|.++++||||+|||..+..++.+.|++++++ |+|||++=|.+. ...-.|+++
T Consensus 169 rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~ 242 (613)
T KOG0061|consen 169 RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLL 242 (613)
T ss_pred CccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhh
Confidence 569999999999999999999999999999999999999999999999887 999999999974 233356543
No 381
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=7.7e-18 Score=131.00 Aligned_cols=73 Identities=23% Similarity=0.242 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-
Q psy5634 2 EISSRGGQQRRVSFAVALMH----------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ- 70 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~----------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~- 70 (79)
+.+|||||++|++||+||+. +|+++|+||||+|||+.+...+++.|.++.. .|.+|+|+||++++...
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHhh
Confidence 57899999999999999986 7999999999999999999999999999865 68999999999999876
Q ss_pred hccee
Q psy5634 71 AHTVI 75 (79)
Q Consensus 71 ~d~i~ 75 (79)
+++|+
T Consensus 1027 ~~~i~ 1031 (1042)
T TIGR00618 1027 PHRIL 1031 (1042)
T ss_pred CCEEE
Confidence 56653
No 382
>PRK10869 recombination and repair protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=122.70 Aligned_cols=70 Identities=24% Similarity=0.385 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 4 SSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
.+||||+||++||++++. +|+++|||||++|+|......+.+.+.++. + +.+||+|||++..+..+|+++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~-~~qvi~iTH~~~~~~~ad~~~ 503 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-E-STQVMCVTHLPQVAGCGHQHF 503 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHhCCEEE
Confidence 589999999999999997 589999999999999999999999999885 3 689999999999888788754
No 383
>PRK03918 chromosome segregation protein; Provisional
Probab=99.73 E-value=2.1e-17 Score=125.76 Aligned_cols=74 Identities=30% Similarity=0.331 Sum_probs=63.4
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQR------RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kq------rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+..|||||++ |++++++++.+|+++|+||||+|||+..+..+.+.|..+... +.+||++||+..+...+|+++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHhCCeEE
Confidence 4689999999 455666888999999999999999999999999999887543 679999999998776788865
Q ss_pred c
Q psy5634 76 D 76 (79)
Q Consensus 76 ~ 76 (79)
.
T Consensus 865 ~ 865 (880)
T PRK03918 865 R 865 (880)
T ss_pred E
Confidence 3
No 384
>KOG0054|consensus
Probab=99.73 E-value=1.4e-17 Score=131.99 Aligned_cols=75 Identities=31% Similarity=0.484 Sum_probs=66.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
++-+||||||||+++|||+-+++|+++||.|++++|....+.+++....-.- .++|+|+|||.+++...+|.|+.
T Consensus 640 rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~~ad~Iiv 714 (1381)
T KOG0054|consen 640 RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLPHADQIIV 714 (1381)
T ss_pred CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhhhCCEEEE
Confidence 4568999999999999999999999999999999999999998876664332 37999999999999999998763
No 385
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=7.7e-18 Score=110.60 Aligned_cols=74 Identities=27% Similarity=0.381 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
|.++|||+||||.|||+++.+-++++|||||+.||..++.-+.+++.+. +..|.+++=+-||.+.-+. +||++.
T Consensus 150 PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHDeevre~vadR~~~ 224 (235)
T COG4778 150 PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHDEEVREAVADRLLD 224 (235)
T ss_pred CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-HhcCceEEEeeccHHHHHHHhhheee
Confidence 6789999999999999999999999999999999999999999999886 5569999999999766555 788653
No 386
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=1.1e-17 Score=111.49 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
..||.||||++.|+..++++|+++++|||++|+......+..+++++++. +.+|++|.|||.++.. ++++
T Consensus 146 ~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~V 216 (249)
T COG4674 146 ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKV 216 (249)
T ss_pred hhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhhee
Confidence 46999999999999999999999999999999999999999999999864 5899999999999987 6654
No 387
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.8e-18 Score=121.10 Aligned_cols=72 Identities=28% Similarity=0.512 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
-.|||||||||+|||+++.+|++++|||.|++||..+.+++...+.+.. .|.|.+++.|.+..+-.+|.|+.
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlsti~~adeiiv 469 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTIIDADEIIV 469 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhccCCceEEE
Confidence 4699999999999999999999999999999999999999999999875 37899999999999999998764
No 388
>PRK01156 chromosome segregation protein; Provisional
Probab=99.71 E-value=4.8e-17 Score=124.65 Aligned_cols=75 Identities=32% Similarity=0.358 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-cEEEEEecCHHHHHhhcc
Q psy5634 2 EISSRGGQQRRVSF------AVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG-N-KTVIITTHYIEEARQAHT 73 (79)
Q Consensus 2 ~~~lS~G~kqrv~l------aral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~-g-~tvi~~tH~~~~~~~~d~ 73 (79)
+..|||||+++++| |++++.+|++++|||||++||+.....+.+++....+.. | .++|++||+..++..||+
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ 878 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADV 878 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCe
Confidence 56899999999975 589999999999999999999999999999887654432 3 489999999998877888
Q ss_pred eec
Q psy5634 74 VID 76 (79)
Q Consensus 74 i~~ 76 (79)
++.
T Consensus 879 ii~ 881 (895)
T PRK01156 879 AYE 881 (895)
T ss_pred EEE
Confidence 764
No 389
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=4.3e-17 Score=129.14 Aligned_cols=69 Identities=26% Similarity=0.318 Sum_probs=62.3
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEecCHHHHHh
Q psy5634 2 EISSRGGQQR------RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK----DGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 2 ~~~lS~G~kq------rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~----~~g~tvi~~tH~~~~~~~ 70 (79)
.+.|||||+| |++||++++.+|++++|||||+|||+.+...+...|.++.. ..|.+||++||++.++..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 4689999999 99999999999999999999999999999999988887642 237899999999998875
No 390
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.71 E-value=2.7e-17 Score=126.29 Aligned_cols=72 Identities=22% Similarity=0.242 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+..|||||+++++||++++ .+|+++|||||+++||+.....+.++|..+.+ +.++||+||++.+...||+++
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~~~~d~~~ 1162 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTMEVADQLY 1162 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHHHHhhhHe
Confidence 5789999999999999984 67799999999999999999999999998753 478999999999887788864
No 391
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.2e-17 Score=107.11 Aligned_cols=66 Identities=27% Similarity=0.249 Sum_probs=59.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
+.+||.|||+||+|||-.+..++++||||||++||......+-..+...+.. |..||.+||..--+
T Consensus 128 ~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~~ 193 (209)
T COG4133 128 VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLPI 193 (209)
T ss_pred hhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcC-CCEEEEecCCccCC
Confidence 5689999999999999999999999999999999999999999988887655 66899999986443
No 392
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.70 E-value=9.4e-17 Score=125.31 Aligned_cols=70 Identities=23% Similarity=0.204 Sum_probs=63.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh
Q psy5634 1 MEISSRGGQQRRVSFAVALMH--------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQA 71 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~--------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~ 71 (79)
++.+|||||+++++|++||+. +|+++|+||||++||+.....+++.|..+.+ .|.||+||||...+....
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHHhc
Confidence 367899999999999999996 8999999999999999999999999999864 589999999987776654
No 393
>KOG0927|consensus
Probab=99.69 E-value=7.1e-17 Score=118.91 Aligned_cols=71 Identities=27% Similarity=0.341 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+|||||+.|++|||+|..+|++++|||||++||+.+..-+-+.|.++ .+ .++++++|..+++.. |-+|+
T Consensus 219 ~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-d~--~~lVi~sh~QDfln~vCT~Ii 290 (614)
T KOG0927|consen 219 VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DR--IILVIVSHSQDFLNGVCTNII 290 (614)
T ss_pred hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc-cC--ceEEEEecchhhhhhHhhhhh
Confidence 4589999999999999999999999999999999999988888777765 22 289999999999877 44444
No 394
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.69 E-value=7.9e-17 Score=117.39 Aligned_cols=75 Identities=25% Similarity=0.350 Sum_probs=69.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
++.+||||+.|||+||.+|.+++|+++||||.+-||...+-.+.+.+++...+.++|.++|.||+-++.. +|+++
T Consensus 452 ~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~i 527 (591)
T COG1245 452 PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527 (591)
T ss_pred ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEE
Confidence 3578999999999999999999999999999999999999999999999988888999999999988876 78764
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.69 E-value=1.2e-16 Score=104.58 Aligned_cols=72 Identities=22% Similarity=0.166 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
.+++|+||+|++.+++++ .+|+++++|||++|+|+..+..+.. .+.++. +.|.++|++||+.+....+|+++
T Consensus 89 ~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~-~~~~~vi~~tH~~~l~~~~d~~~ 161 (200)
T cd03280 89 LSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL-ERGALVIATTHYGELKAYAYKRE 161 (200)
T ss_pred cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECCHHHHHHHHhcCC
Confidence 357899999999999885 7999999999999999999999865 566654 45899999999976655677643
No 396
>KOG0056|consensus
Probab=99.68 E-value=3.2e-17 Score=120.71 Aligned_cols=73 Identities=25% Similarity=0.479 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+-.|||||||||+|||+++.+|.+++|||.|++||..+.+.+...+.+++. ++|.|++.|.+..+-.+|.|+.
T Consensus 672 GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivnAD~ILv 744 (790)
T KOG0056|consen 672 GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVNADLILV 744 (790)
T ss_pred ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheecccEEEE
Confidence 447999999999999999999999999999999999999999999999975 6899999999999888887653
No 397
>KOG0062|consensus
Probab=99.67 E-value=1.4e-16 Score=116.87 Aligned_cols=69 Identities=32% Similarity=0.426 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
.+||||||-||++|.+...+|.+|+|||||+.||..+...+.+.|+.+ +..||+||||.+++.. |..++
T Consensus 481 ~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~W 550 (582)
T KOG0062|consen 481 ASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKELW 550 (582)
T ss_pred cccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeE
Confidence 579999999999999999999999999999999999999998888765 2369999999999987 55544
No 398
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.66 E-value=2.8e-16 Score=104.41 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=70.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++..||.||||||++||||+.+|+++|.||..++||...+.++.+++.++.++.|.+.|+|+.++..++. +|+++.
T Consensus 146 ~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viV 222 (267)
T COG4167 146 YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLV 222 (267)
T ss_pred chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEE
Confidence 3567999999999999999999999999999999999999999999999988889999999999999987 787764
No 399
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.9e-16 Score=105.00 Aligned_cols=70 Identities=27% Similarity=0.423 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh--cce
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQA--HTV 74 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~--d~i 74 (79)
.+|||+|+|..|+.+++.+|++.|||||-||||..+-+.+.+.+..+. +.|.+++++||....+... |++
T Consensus 144 GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr-~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 144 GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR-EEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHhhcCCCEE
Confidence 699999999999999999999999999999999999999999999885 5589999999999888764 554
No 400
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=7.2e-16 Score=104.59 Aligned_cols=74 Identities=24% Similarity=0.408 Sum_probs=68.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
++++||.||+-|++++.|...+|++||+||-.+--|+..+++..+.+.++.++ +.|+|+|||+++.+++ ||+++
T Consensus 144 PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~i 218 (249)
T COG1134 144 PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLGAIKQYCDRAI 218 (249)
T ss_pred chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhcCeeE
Confidence 36789999999999999999999999999999999999999999999998654 6999999999999987 88854
No 401
>KOG0927|consensus
Probab=99.65 E-value=1.6e-16 Score=117.02 Aligned_cols=69 Identities=29% Similarity=0.390 Sum_probs=61.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
.++||+|||+||.+|+.++.+|.+++|||||+|||......+.+.|.++ ..+||++|||..++.+ ++++
T Consensus 507 ~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi 576 (614)
T KOG0927|consen 507 MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEI 576 (614)
T ss_pred hhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHh
Confidence 4689999999999999999999999999999999999999998887764 3479999999998876 5554
No 402
>KOG0054|consensus
Probab=99.64 E-value=7.1e-16 Score=122.42 Aligned_cols=73 Identities=26% Similarity=0.338 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.++|.||||.+|+||||++++++++|||.|+++|+.+-..+.+.|++..+ ++||+.+.|.++.+..+|+|+.
T Consensus 1273 G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~DrVlV 1345 (1381)
T KOG0054|consen 1273 GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDRVLV 1345 (1381)
T ss_pred CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCeEEE
Confidence 578999999999999999999999999999999999999999999998654 6999999999999999999864
No 403
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.64 E-value=6.7e-16 Score=119.16 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+..||||||++++||++++. +|++++||||+++||+..+..+.++|.++.. +.++|++||+......+|+++
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~~~~d~~~ 1147 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMIEYADRAI 1147 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHhcceeE
Confidence 56899999999999999985 7899999999999999999999999988743 478999999998887788875
No 404
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.63 E-value=1.6e-16 Score=107.56 Aligned_cols=77 Identities=29% Similarity=0.498 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecCC
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDNY 78 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~~ 78 (79)
|.+|.-|+.|||.||.|++.+|+++|.||||+.+++.++.++++++.+++...|.||++++||+..+.+ +|++-..|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence 678899999999999999999999999999999999999999999999988889999999999999887 88865443
No 405
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.63 E-value=1.1e-15 Score=111.52 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
+++||||+-||++||.+++++++++++|||++-||...+-...+.++++++. +++||+|.||+..... +|-+
T Consensus 211 v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~v 283 (591)
T COG1245 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFV 283 (591)
T ss_pred hhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhhee
Confidence 4689999999999999999999999999999999999999999999999765 8999999999987765 5543
No 406
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.62 E-value=1e-15 Score=116.66 Aligned_cols=73 Identities=30% Similarity=0.444 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
.+|||||.||+-||.-|.... -++||||||+||...-.+++++.|.++.. .|.|||++.||++.++.+|.|+.
T Consensus 821 tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLdVIk~AD~IID 896 (935)
T COG0178 821 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLDVIKTADWIID 896 (935)
T ss_pred ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecccceEeecCEEEE
Confidence 589999999999999999887 99999999999999999999999999975 48999999999999999999875
No 407
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.61 E-value=2e-15 Score=112.57 Aligned_cols=66 Identities=29% Similarity=0.379 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
..||+|||||+++||.+.++|++++|||.|++||+.+...+++.+++.. .+.|||-|+|....-..
T Consensus 514 ~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~~ 579 (604)
T COG4178 514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPTLWNF 579 (604)
T ss_pred hhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchhhHHH
Confidence 3599999999999999999999999999999999999999999998754 37999999998765443
No 408
>PRK02224 chromosome segregation protein; Provisional
Probab=99.60 E-value=3.3e-15 Score=114.20 Aligned_cols=75 Identities=24% Similarity=0.324 Sum_probs=63.4
Q ss_pred CCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 2 EISSRGGQQR------RVSFAVALMHD-----P-ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 2 ~~~lS~G~kq------rv~laral~~~-----p-~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
+..||||||+ |++++++++.+ | +++|+||||+++|+.....+.+.|..+...+..+||++||+..++.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 4689999999 88888888864 2 6799999999999999999999998875432248999999999988
Q ss_pred hhcceec
Q psy5634 70 QAHTVID 76 (79)
Q Consensus 70 ~~d~i~~ 76 (79)
.+|+++.
T Consensus 859 ~ad~~~~ 865 (880)
T PRK02224 859 AADDLVR 865 (880)
T ss_pred hcCeeEE
Confidence 8888754
No 409
>KOG0066|consensus
Probab=99.53 E-value=9.8e-15 Score=107.01 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=58.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
..+|||||+.||++|-.-+..|+++||||||++||..+...+.+.|.++ ...|||||||-..+..
T Consensus 702 ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 702 IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERLIVE 766 (807)
T ss_pred eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccceeee
Confidence 3579999999999999999999999999999999999999999988876 2369999999887754
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.52 E-value=6e-14 Score=91.85 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQAHT 73 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~~d~ 73 (79)
+.+|.+++| +..+.+++.+|+++|+|||++|+|+.....+... +..+ .+.+.++|++||+.+++..+++
T Consensus 90 s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l-~~~~~~vi~~tH~~~~~~~~~~ 159 (202)
T cd03243 90 STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHL-LEKGCRTLFATHFHELADLPEQ 159 (202)
T ss_pred eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCeEEEECChHHHHHHhhc
Confidence 356666665 6666788899999999999999999998887654 4444 3458899999999988877663
No 411
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.52 E-value=3.1e-14 Score=103.87 Aligned_cols=75 Identities=27% Similarity=0.421 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN 77 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~ 77 (79)
..+||||.+||+-+||=|..+|+++|+-+||.|||..+.+.+.+.+.+.. +.|++|+++|-+++++.. +|+|..-
T Consensus 401 a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r-~~G~AVLLiS~dLDEil~lsDrIaVi 476 (501)
T COG3845 401 ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR-DAGKAVLLISEDLDEILELSDRIAVI 476 (501)
T ss_pred hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH-hcCCEEEEEehhHHHHHHhhheeeee
Confidence 46899999999999999999999999999999999999999999999985 459999999999999876 8987653
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.51 E-value=7.5e-14 Score=93.28 Aligned_cols=70 Identities=20% Similarity=0.095 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 3 ISSRGGQQRRVSFAVAL--MHDPELLILDEP---TVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 3 ~~lS~G~kqrv~laral--~~~p~~lllDEP---~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
..+|.|+++++.+++++ +.+|+++|+||| |+++|+..... ..+..+.++.|.++|++||+.+....+|++
T Consensus 88 ~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH~~el~~~~~~~ 162 (222)
T cd03285 88 KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLFATHFHELTALADEV 162 (222)
T ss_pred cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEEEechHHHHHHhhcC
Confidence 57999999999999999 899999999999 88899887754 333444333478999999975554446653
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=3.8e-14 Score=96.58 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 4 SSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 4 ~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
.+|+||+|++++|++|+ .+|+++++||||++||+..++.+.+.+.+. + .+++++|+...+..
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~ 253 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDA 253 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccc
Confidence 48999999999999985 799999999999999999999998888754 2 35666666555443
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.51 E-value=8.2e-14 Score=90.40 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHhhc
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEARQAH 72 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~~~d 72 (79)
++||+|++|...+.. .+.+|+++|+|||++|+|+.....+.. +++.+.++.+.++|++||+.+....++
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD 129 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence 467777776433332 234999999999999999998887654 445554334789999999997655454
No 415
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.50 E-value=1.9e-14 Score=88.21 Aligned_cols=31 Identities=48% Similarity=0.836 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTV 33 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~ 33 (79)
..||+|||||++||+|++.+|+++||||||+
T Consensus 107 ~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 107 SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 6899999999999999999999999999996
No 416
>KOG0065|consensus
Probab=99.48 E-value=1.4e-14 Score=114.43 Aligned_cols=72 Identities=24% Similarity=0.398 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH--HHHhhccee
Q psy5634 3 ISSRGGQQRRVSFAVALMHDP-ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE--EARQAHTVI 75 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p-~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~--~~~~~d~i~ 75 (79)
..||.+||||+.||--|+.+| .+|+|||||+|||..+...+++.++++++ .|.||+++=|.+. ..+..|+++
T Consensus 928 ~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LL 1002 (1391)
T KOG0065|consen 928 SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELL 1002 (1391)
T ss_pred CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHH
Confidence 469999999999999999999 99999999999999999999999999986 5999999999985 345677653
No 417
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.48 E-value=9.5e-15 Score=96.55 Aligned_cols=73 Identities=22% Similarity=0.411 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHHhc-----C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH-hhcc
Q psy5634 2 EISSRGGQQRRVSFAVALMH-----D--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR-QAHT 73 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~-----~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~-~~d~ 73 (79)
..+|||||-|||-+|...+. | .+++++|||.++||...+..+-..+.+++.. |.+|||++||++-.. .+|+
T Consensus 123 ~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~ 201 (248)
T COG4138 123 TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHR 201 (248)
T ss_pred hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHH
Confidence 56899999999999977654 3 3799999999999999999999999999865 999999999998654 4776
Q ss_pred ee
Q psy5634 74 VI 75 (79)
Q Consensus 74 i~ 75 (79)
++
T Consensus 202 ~w 203 (248)
T COG4138 202 AW 203 (248)
T ss_pred HH
Confidence 53
No 418
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=2.8e-13 Score=96.20 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 4 SSRGGQQRRVSFAVALMH---------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~---------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
.+|.||+|++.+|..|+. +|+++|||||+++||+..++.+++.+.+. |.+++++||+.+.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence 589999999999999999 99999999999999999999999888643 679999999987653
No 419
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.43 E-value=7.8e-13 Score=102.22 Aligned_cols=73 Identities=29% Similarity=0.328 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634 2 EISSRGGQQRRVSFAVALM------HD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHT 73 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~------~~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~ 73 (79)
+.+||||++-.++||.+|+ .+ -+++++||||..||+...+.++++|..+... +.+|++|||+.++...+|.
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEELKERADV 891 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHHHhCCe
Confidence 5789999999888876654 45 7999999999999999999999999998654 8999999999999888887
Q ss_pred ee
Q psy5634 74 VI 75 (79)
Q Consensus 74 i~ 75 (79)
++
T Consensus 892 ~i 893 (908)
T COG0419 892 RI 893 (908)
T ss_pred EE
Confidence 54
No 420
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.43 E-value=6.4e-13 Score=101.69 Aligned_cols=73 Identities=27% Similarity=0.457 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
.+|||||.||+.||.-+-.+= =+++||||+.||-+.-.+++.+.|+++ ++.|.|+|+|.||.+.+..+|.++.
T Consensus 480 ~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~L-RDlGNTviVVEHDedti~~AD~iID 554 (935)
T COG0178 480 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRL-RDLGNTVIVVEHDEDTIRAADHIID 554 (935)
T ss_pred CCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHH-HhcCCeEEEEecCHHHHhhcCEEEe
Confidence 589999999999999998773 689999999999999999999999998 5669999999999999999999875
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.43 E-value=1.3e-12 Score=85.94 Aligned_cols=70 Identities=31% Similarity=0.412 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 4 SSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 4 ~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
.||||||..++||.-|+ .++++++||||.++||+..+..+.+.|.+..+ +.-+|++||+......+|+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~~a~~~~ 209 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHNPEMFEDADKLI 209 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-HHHHTT-SEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence 58999999999987653 46799999999999999999999999998743 478999999999988888754
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=1.6e-12 Score=86.07 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
+.+|+|++|. ..+.+++.+|+++++|||++|+|+.....+.. ++..+. +.|.++|++||+.+++..
T Consensus 90 S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~-~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 90 STFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI-KKESTVFFATHFRDIAAI 156 (204)
T ss_pred hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHHHHHH
Confidence 4688999975 55566889999999999999999987666544 455554 458999999999998765
No 423
>KOG0066|consensus
Probab=99.39 E-value=8.9e-14 Score=102.05 Aligned_cols=64 Identities=36% Similarity=0.359 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
..+|||+|.||++||||...|-+++|||||+.||....--+-+.|.-+ .+|.+|||||..+...
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDS 474 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccchHHH
Confidence 369999999999999999999999999999999988776666665554 4699999999998876
No 424
>PRK00064 recF recombination protein F; Reviewed
Probab=99.39 E-value=1.3e-12 Score=92.49 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 3 ISSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
..+|.||+|++.+|+.|+ .+|+++|+|||+++||+..++.+++.+.+. +..++++||+.+.+..
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~ 344 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLAD 344 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhh
Confidence 468999999999999986 799999999999999999999998877653 3579999998876543
No 425
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.5e-12 Score=94.23 Aligned_cols=74 Identities=24% Similarity=0.464 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
-.||-|||||+++..|++-+.+++++||=.+..||..++.+...+.-..++.|+||+.+|||-.-...+||++.
T Consensus 447 ~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~ 520 (546)
T COG4615 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE 520 (546)
T ss_pred cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHH
Confidence 36999999999999999999999999999999999999999998888778889999999999877777887654
No 426
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.35 E-value=2.3e-12 Score=102.99 Aligned_cols=60 Identities=28% Similarity=0.429 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 2 EISSRGGQQRRVS----FAVA--------LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 2 ~~~lS~G~kqrv~----lara--------l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+.|||||||++. +|++ +..+|++++|||||+|+|+.+...+++++.++ |.++||+||.+
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 4689999999996 5644 55899999999999999999999999988876 67899999875
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.34 E-value=3.2e-12 Score=97.96 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
.++||+||++++.+++++ .+|.++|+|||++|+||.....+... +..+ .+.|.++|++||+.+....
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l-~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL-RKRGAKIIATTHYKELKAL 455 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECChHHHHHH
Confidence 467999999999999988 79999999999999999999988654 4444 4458899999999887765
No 428
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.34 E-value=8.5e-12 Score=79.68 Aligned_cols=65 Identities=29% Similarity=0.392 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 3 ISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
..+|.|+++.+.++..+...+ .++++|||-++|+|.....+.+.|.+..+ .+.-+|++||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence 468999999999888887776 89999999999999999999999987754 478999999998654
No 429
>KOG2355|consensus
Probab=99.29 E-value=3e-12 Score=86.46 Aligned_cols=67 Identities=28% Similarity=0.445 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
...|-|||+||.|+..|++.-++++|||.|-.||..++..+++.+++.++..|.||+++||-.+-.+
T Consensus 146 HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe 212 (291)
T KOG2355|consen 146 HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLE 212 (291)
T ss_pred eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchh
Confidence 4579999999999999999999999999999999999999999999999888999999999765433
No 430
>KOG0060|consensus
Probab=99.28 E-value=1.4e-11 Score=91.86 Aligned_cols=63 Identities=25% Similarity=0.299 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
.||+||+||+++||.+.++|++.+|||-|+++|......+.+.+++ .|.|.|-|+|....-+.
T Consensus 570 vLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 570 VLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRKSLWKF 632 (659)
T ss_pred hcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHHHHHhh
Confidence 5999999999999999999999999999999999988888776554 48999999998776543
No 431
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.28 E-value=3.4e-11 Score=79.27 Aligned_cols=62 Identities=31% Similarity=0.311 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHhh
Q psy5634 9 QQRRVSFAVALMH--DPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEARQA 71 (79)
Q Consensus 9 ~kqrv~laral~~--~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~~~ 71 (79)
+.+++.-+...+. +|+++|+|||++|+|+..+..+.. ++..+.+ .|.++|++||+++++...
T Consensus 90 e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 90 ELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhh
Confidence 4455555555555 999999999999999999987654 6676654 489999999999987654
No 432
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=6e-11 Score=78.82 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc--CCcEEEEEecCHHHHHh
Q psy5634 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKD--GNKTVIITTHYIEEARQ 70 (79)
Q Consensus 8 G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i-~~~l~~~~~~--~g~tvi~~tH~~~~~~~ 70 (79)
-+-||++++++++.+|.++|+|||++|+|+.....+ ...++.+.+. .+.++|++||+.+.+..
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 457999999999999999999999999999865554 5677776543 13589999999998765
No 433
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.21 E-value=4.8e-11 Score=91.48 Aligned_cols=66 Identities=24% Similarity=0.273 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIW-NHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~-~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
.++||+||+++..+++.+ .+|.++|+|||++|+||.....+. .++..+. +.|.++|++||+.+...
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~-~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLL-KQNAQVLITTHYKELKA 449 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHHHHH
Confidence 467999999999998876 789999999999999999999985 5565554 45889999999987643
No 434
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.18 E-value=5.7e-11 Score=86.63 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i 74 (79)
.++||-|||.|+.||.+++..|.+++.||-.+.||+.+...+.+.+.+++++.|.|++++||+.++... =|++
T Consensus 505 f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 505 FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred HhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 368999999999999999999999999999999999999999999999999899999999999998765 3554
No 435
>KOG0063|consensus
Probab=99.14 E-value=5.6e-11 Score=86.80 Aligned_cols=75 Identities=24% Similarity=0.299 Sum_probs=65.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||++||+++|.+|-..+++++.|||.+-||...+...-..++++.-..++|-++|.||.-.+.. +|+++.
T Consensus 454 vq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrviv 529 (592)
T KOG0063|consen 454 VQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 529 (592)
T ss_pred hhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEE
Confidence 457999999999999999999999999999999999998887777777654557899999999877765 888764
No 436
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.09 E-value=4.5e-10 Score=74.74 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=44.1
Q ss_pred CCCHHHHHH----HHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634 4 SSRGGQQRR----VSFAVAL--MHDPELLILDEP---TVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHT 73 (79)
Q Consensus 4 ~lS~G~kqr----v~laral--~~~p~~lllDEP---~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~ 73 (79)
++|.|+.+. ..+++++ +.+|+++|+||| |+++|.... ...++..+.+..+.++|++||+.+....+++
T Consensus 85 ~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~ 161 (216)
T cd03284 85 DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYHELTELEGK 161 (216)
T ss_pred hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcHHHHHHhhc
Confidence 466666543 3465555 469999999999 777776542 2333444433337899999999866554443
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.03 E-value=6.2e-10 Score=70.98 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=52.1
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 2 EISSRGGQQR------RVSFAVALMHDPELLILDEPTVGVD---PLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 2 ~~~lS~G~kq------rv~laral~~~p~~lllDEP~~glD---~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
+..+|+|++| +.....+...+|+++++|||++.+| +..+..+.+.+..+.+ .|.|+|+++|+...
T Consensus 69 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~ 142 (187)
T cd01124 69 PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGL 142 (187)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccC
Confidence 3467999988 4555555677999999999999999 7778888888877754 48999999998764
No 438
>PRK14079 recF recombination protein F; Provisional
Probab=99.03 E-value=4.7e-10 Score=79.28 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 4 SSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 4 ~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
-+|+||++++.+|+.|+ .+|+++++|||+++||+..+..+.+.+..
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~ 317 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS 317 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc
Confidence 47999999999999999 89999999999999999999999887754
No 439
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=99.03 E-value=9.4e-10 Score=64.50 Aligned_cols=47 Identities=28% Similarity=0.306 Sum_probs=36.0
Q ss_pred CCCCHHHH-HHHHHHHHH------hc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 3 ISSRGGQQ-RRVSFAVAL------MH------DPELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 3 ~~lS~G~k-qrv~laral------~~------~p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
+++||||| ..+.++.++ .. .|++++|||||+++|+...+.+++++++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 57999999 444444332 22 3799999999999999999999998763
No 440
>KOG0064|consensus
Probab=99.02 E-value=3.1e-10 Score=84.59 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
-||||+|||+++||.+-++|++.+|||-|++..+.....+++..++ .|.+.+-+||.+..-+
T Consensus 612 ~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrpslwk 673 (728)
T KOG0064|consen 612 VLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPSLWK 673 (728)
T ss_pred hccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCccHHH
Confidence 4999999999999999999999999999999999999998876654 4899999999987654
No 441
>KOG0063|consensus
Probab=99.00 E-value=8.3e-10 Score=80.79 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=61.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
+.+||||+-||.++|.+.+++.+++++|||.+-||.+.+-+-...++.+..- ..=||+|.||+.....
T Consensus 211 ~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p-~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 211 VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINP-DRYIIVVEHDLSVLDY 278 (592)
T ss_pred hhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCC-CCeEEEEEeechHHHh
Confidence 4579999999999999999999999999999999999999998889988654 6789999999987755
No 442
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.96 E-value=1.3e-09 Score=71.43 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q psy5634 9 QQRRVSFAVALMHDPELLILDEPT-----VGVDPLLRQSIWNHLVQIT 51 (79)
Q Consensus 9 ~kqrv~laral~~~p~~lllDEP~-----~glD~~~~~~i~~~l~~~~ 51 (79)
+++++.||++++.+|+++++|||| +|||+..++.+.+.+.+++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 889999999999999999999999 9999999999999999875
No 443
>KOG0065|consensus
Probab=98.94 E-value=5.2e-10 Score=89.11 Aligned_cols=76 Identities=25% Similarity=0.257 Sum_probs=65.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH--HHhhcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE--ARQAHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~--~~~~d~i~~ 76 (79)
+++..|||||+||+++-+++.+|+++.+||+|.|||..+.-++.+.++.+++..+.|++++-+.... ..-.|+++-
T Consensus 257 ~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~l 334 (1391)
T KOG0065|consen 257 MVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVIL 334 (1391)
T ss_pred ccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheee
Confidence 4578999999999999999999999999999999999999999999999988778899998887532 233666543
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.87 E-value=1.6e-08 Score=67.64 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 10 QRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 10 kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
-++++-....+.+|.++|+|||++|+++.....+... ++.+.+..+.++|++||+++.+..
T Consensus 97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 4444444445579999999999999999999998887 455543338999999999988765
No 445
>PF13175 AAA_15: AAA ATPase domain
Probab=98.79 E-value=2.9e-08 Score=69.60 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 2 EISSRGGQQRRVSFAVALM------HD-PE---LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~------~~-p~---~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
...+|.|.++.+.++..+. .+ +. ++++|||-+.|.|..++.+++.|.++....+..||++||.+.+
T Consensus 339 l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 339 LSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 3578999998888776542 12 22 9999999999999999999999999987668899999999764
No 446
>PRK13695 putative NTPase; Provisional
Probab=98.76 E-value=2.8e-08 Score=63.49 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDE--PTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDE--P~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
.+|++++.+..+++..+.+|+++++|| |+.++++.. .+.+.+.. +.|.++|+++|+......+|++..
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~ 147 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKS 147 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHH-hCCCeEEEEECchhhHHHHHHHhc
Confidence 589999999999999999999999999 555555544 44455544 347899999998654444565543
No 447
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.72 E-value=1.1e-07 Score=63.85 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 9 QQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 9 ~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i-~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
+-++++-+.--+.+|.++|+|||++|.|+.....+ ..++..+.+..+.++|++||+.+....
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 34444444445678999999999999998777774 456666654447899999999987653
No 448
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.71 E-value=4e-08 Score=78.07 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
...||||||-.++||..++ ...++++|||--++||..+...+.++|.+.. .+.-+|+|||.......+|+.+
T Consensus 1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s--~~sQFIvIThr~~~m~~ad~l~ 1139 (1163)
T COG1196 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS--KETQFIVITHRKGTMEAADRLV 1139 (1163)
T ss_pred hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC--cCCeEEEEEcChHHHHHHHHHe
Confidence 3569999999999988665 4569999999999999999999999999985 3688999999998887777643
No 449
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.54 E-value=4.6e-07 Score=68.45 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 2 EISSRGGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~------~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
+..|||||+|-+++|..++. ..++ ++||||+.||+..+..+.. .+... +.-||+.|||-++-.
T Consensus 549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~----~~QvIils~d~e~~~ 618 (650)
T TIGR03185 549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA----SHQVLLLSTDEEVDE 618 (650)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc----CCeEEEEechHhhCH
Confidence 45799999999876654432 3566 4699999999999999875 44432 457888889876543
No 450
>KOG0964|consensus
Probab=98.53 E-value=8.1e-08 Score=75.07 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 3 ISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
.+||||||--||||..++. +++++||||--++||++.+..+..+++++... .-+|.+|-.++.+..+|+++
T Consensus 1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~--aQFI~TTFRpEll~vAdKfy 1170 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS--AQFITTTFRPELLSVADKFY 1170 (1200)
T ss_pred HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc--cceEeecccHHHHHHHHhhh
Confidence 4799999999999987764 35999999999999999999999999999753 67888888888888787654
No 451
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.47 E-value=6.5e-07 Score=69.59 Aligned_cols=55 Identities=29% Similarity=0.431 Sum_probs=48.1
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 15 FAVALMHDPELLILDEPTVGV-DPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 15 laral~~~p~~lllDEP~~gl-D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
+.+++..+|.++++|||+.+| |+..++.+.+.++...+ .|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhh
Confidence 567888999999999999999 79999999999988754 47899999999998754
No 452
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.46 E-value=7.5e-07 Score=69.00 Aligned_cols=51 Identities=33% Similarity=0.517 Sum_probs=44.6
Q ss_pred HHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 18 ALMHDPELLILDEPTVGV-DPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 18 al~~~p~~lllDEP~~gl-D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
.+..+|.++++|||+.+| |+...+.+.+.++...+ .|.+++++||+++.+.
T Consensus 648 ~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 648 RLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAE 699 (818)
T ss_pred hcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHh
Confidence 346899999999999999 69999999999998754 4789999999998874
No 453
>PF13166 AAA_13: AAA domain
Probab=98.41 E-value=2.7e-06 Score=64.27 Aligned_cols=68 Identities=24% Similarity=0.342 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHHh--c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEecCHHHHHh
Q psy5634 3 ISSRGGQQRRVSFAVALM--H-------DPELLILDEPTVGVDPLLRQSIWNHLVQITK-DGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~--~-------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~-~~g~tvi~~tH~~~~~~~ 70 (79)
..||-|+|.-+++|-.|+ . +..++++|.|-+.||...+..+...|.+... ....-||+-|||..+...
T Consensus 499 ~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~ 576 (712)
T PF13166_consen 499 KILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKE 576 (712)
T ss_pred CccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHH
Confidence 579999999999987553 2 5689999999999999999999999998851 225789999999988754
No 454
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.37 E-value=2.5e-06 Score=60.58 Aligned_cols=67 Identities=27% Similarity=0.393 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 2 EISSRGGQQRRVSFAVALMHD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
...||-|+-+-++++-+|... |.++++|||-.+|-|..-..+...+.+.++. + -||++||...++..
T Consensus 268 ~~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~-s-Qv~VsTHS~rLl~~ 336 (373)
T COG4637 268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKR-S-QVIVSTHSPRLLNA 336 (373)
T ss_pred hhhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhcc-c-eEEEEeCCHHHHhh
Confidence 357999999999999999864 8999999999999999999999999887654 3 89999999988754
No 455
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.34 E-value=2.9e-06 Score=56.79 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
.|.|+-=.--+.+.+ ++.-+++||||-++|.|.-+-++..++.++.+. |.-+||+||.+-...
T Consensus 130 ~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlA 192 (233)
T COG3910 130 MSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLA 192 (233)
T ss_pred hccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhhee
Confidence 577775544444443 577899999999999999999999999999765 789999999986543
No 456
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.28 E-value=6.6e-07 Score=59.84 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=40.8
Q ss_pred HHhcCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 18 ALMHDPELLILDEPTV------GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 18 al~~~p~~lllDEP~~------glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+...+|+++++| |++ ..|+.....+++.+.+++++.|.++++++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 345799999999 765 479999999999999988777999999999864
No 457
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.27 E-value=4.3e-06 Score=56.14 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 5 SRGGQQRRVSFAVALM----HDPELLILDEPTVGV----DPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 5 lS~G~kqrv~laral~----~~p~~lllDEP~~gl----D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
+|+++.++-.+.+.+- .+|+++++|||++++ |+...+.+.+.++.+.+. |.|+++ ||+...
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~-t~~~~~ 164 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIIL-TANPKE 164 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEE-Eecccc
Confidence 4555544444443333 369999999999999 888888899988887554 666655 555443
No 458
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.24 E-value=5.3e-07 Score=61.51 Aligned_cols=69 Identities=19% Similarity=0.163 Sum_probs=53.8
Q ss_pred CCCCCHHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q psy5634 2 EISSRGGQ--------QRRVSFAVALMHDPELLILDEPTVGVDPLLRQS-IWNHLVQITKDGNKTVIITTHYIEEARQAH 72 (79)
Q Consensus 2 ~~~lS~G~--------kqrv~laral~~~p~~lllDEP~~glD~~~~~~-i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d 72 (79)
+..+|||+ +|++++||++..++.+.+| ||+.+|+..... +. +.+. +..+.|.|+.||.+.....++
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~-~~~~~~~ivls~~la~~~~~p 201 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEF-KGTGNMELVLDRRLAERRIFP 201 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHH-hcCCCcEEEEchHHhhCCCCC
Confidence 45689999 9999999999899999999 999999544332 33 3333 334689999999998877766
Q ss_pred cee
Q psy5634 73 TVI 75 (79)
Q Consensus 73 ~i~ 75 (79)
.|.
T Consensus 202 aI~ 204 (249)
T cd01128 202 AID 204 (249)
T ss_pred eEE
Confidence 653
No 459
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.24 E-value=9.1e-06 Score=60.93 Aligned_cols=70 Identities=26% Similarity=0.393 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHH--HhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 4 SSRGGQQRRVSFAVA--LMHD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 4 ~lS~G~kqrv~lara--l~~~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
.-|||+-.|+.||.- ++.. .+.+||||--+|+.=.....|-+.|+++.+ +.-|++|||-+..+..+|..+
T Consensus 431 vASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~--~~QVl~VTHlPQVAa~ad~H~ 504 (557)
T COG0497 431 VASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE--HHQVLCVTHLPQVAAMADTHF 504 (557)
T ss_pred hcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc--CceEEEEecHHHHHhhhcceE
Confidence 469999999999873 3333 569999999999999999999999999864 578999999999998888643
No 460
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.15 E-value=1.7e-05 Score=52.76 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 5 SRGGQQRRVSFAVALMH--DPELLILDEPTVG---VDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 5 lS~G~kqrv~laral~~--~p~~lllDEP~~g---lD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
.|.++++.+..+...+. +|+++++|||++. .|......++..+..+.+ .|.|+++++|...
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~ 166 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYA 166 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc
Confidence 46788899999988887 9999999999954 555555555555655544 4789999999754
No 461
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.12 E-value=1.8e-05 Score=54.67 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=31.2
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 15 FAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 15 laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
...+.+.+|+++++|||++ .+.+..++... + .|.++|++||+...
T Consensus 187 ~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~-~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H-AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h-CCCEEEEEechhHH
Confidence 3444557999999999973 23344444443 3 48999999998665
No 462
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.10 E-value=2.6e-05 Score=47.69 Aligned_cols=61 Identities=23% Similarity=0.216 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 6 RGGQQRRVSFAVALMHDPELLILDEPTV----------GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 6 S~G~kqrv~laral~~~p~~lllDEP~~----------glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
+.+..++...+++...+|+++++|||++ +.+....+.+.++. +..++.+.|+|+++|....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 69 AAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELL-ERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHH-HHHhcCCceEEEEEecCCc
Confidence 3455566778889999999999999994 45555556665554 4446668999999997643
No 463
>KOG0962|consensus
Probab=98.06 E-value=1.1e-05 Score=64.95 Aligned_cols=68 Identities=26% Similarity=0.301 Sum_probs=55.4
Q ss_pred CCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----hcCCcEEEEEecCHHHHHh
Q psy5634 3 ISSRGGQQR------RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT----KDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 3 ~~lS~G~kq------rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~----~~~g~tvi~~tH~~~~~~~ 70 (79)
+--|.|||- |+|+|-.++.++.+|-|||||++||..+...+...+.++. +..+.-.|++|||-.++..
T Consensus 1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~ 1259 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQL 1259 (1294)
T ss_pred cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHH
Confidence 345788875 6777888999999999999999999999988777766654 2346789999999998754
No 464
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.06 E-value=2.7e-05 Score=60.80 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q psy5634 4 SSRGGQQRRVSFAVALMH--DPELLILDEP---TVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAH 72 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~--~p~~lllDEP---~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d 72 (79)
.+|.-+.....++.+|-. ++.++|+||| |+.+|-. ...+.++..+.+..|.+++++||+.+....++
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--aia~aile~l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SIAWAVAEYLHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HHHHHHHHHHHhcCCceEEEEechHHHHHHhh
Confidence 466667777888777766 8999999999 6666622 33445555555544689999999976654443
No 465
>KOG0933|consensus
Probab=98.06 E-value=3e-06 Score=66.69 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 3 ISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
..||||||..|||+..|+ .+++++||||.-++||-.-.+.|-.+|+... .+.-+|+||=--.....++++
T Consensus 1081 ~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF--~~sQFIVVSLKeGMF~NANvL 1154 (1174)
T KOG0933|consen 1081 SELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--THSQFIVVSLKEGMFNNANVL 1154 (1174)
T ss_pred HHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC--CCCeEEEEEchhhccccchhh
Confidence 469999999999877554 4679999999999999999999999988754 367899998655555555543
No 466
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.02 E-value=1.9e-05 Score=61.09 Aligned_cols=51 Identities=29% Similarity=0.434 Sum_probs=43.2
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 18 ALMHDPELLILDEPTVGVD-PLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 18 al~~~p~~lllDEP~~glD-~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
.+-.+|.++++|||+.+|| +.....+.+.++...+ .|.+++++||+++.+.
T Consensus 631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLADID 682 (811)
T ss_pred HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHh
Confidence 3456899999999999999 7788888888888754 5789999999998765
No 467
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.85 E-value=7.7e-05 Score=57.73 Aligned_cols=52 Identities=29% Similarity=0.434 Sum_probs=44.4
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 18 ALMHDPELLILDEPTVGVD-PLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 18 al~~~p~~lllDEP~~glD-~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
.+..+|.++++|||...|| +...+.+.+.++... +.|..++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLR-KLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHh
Confidence 4567899999999999999 888888999888874 457899999999987654
No 468
>KOG0996|consensus
Probab=97.83 E-value=1.8e-05 Score=63.10 Aligned_cols=72 Identities=21% Similarity=0.167 Sum_probs=58.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 1 MEISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
++.+||||+|-.-+||..++. ..+++++||--++||..+...+.+.+++..+ +.-+|+||=.-+..+-+++.
T Consensus 1192 ~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTk--NAQFIIISLRnnMFELa~rL 1267 (1293)
T KOG0996|consen 1192 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTK--NAQFIIISLRNNMFELANRL 1267 (1293)
T ss_pred hcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhcc--CCeEEEEEehhhHHHHHhhh
Confidence 367999999999999998875 4599999999999999999999999987543 56788888665555555553
No 469
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.71 E-value=0.00046 Score=46.60 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecCHHHHHh
Q psy5634 4 SSRGGQQRRVSFAVAL--MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTHYIEEARQ 70 (79)
Q Consensus 4 ~lS~G~kqrv~laral--~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-~g~tvi~~tH~~~~~~~ 70 (79)
.+|.=+.-...+...+ +.+..++|+||+..|-++.....+...+.+...+ .+..++++||+.+....
T Consensus 102 ~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 102 GLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp SSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred ccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 3555444444444444 5577899999999999999999877766665544 47889999999876543
No 470
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.00017 Score=50.93 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=35.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 26 LILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 26 lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
+++|||+.+||+..++.+.+.+.+.. .+.++|++||+.+.+.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP--PQVVFLLVSHAADKVL 157 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc--CCCEEEEEeCChHhCh
Confidence 55789999999999999999998873 3688999999987543
No 471
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.48 E-value=0.0004 Score=45.47 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 14 SFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
++.++|..+|+++++|||. |+.....+ .+.+. .|..++.++|..+.....++++
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~-~G~~v~~t~Ha~~~~~~~~Rl~ 119 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAE-TGHLVMSTLHTNSAAKTIDRII 119 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHH-cCCEEEEEecCCcHHHHHhHHH
Confidence 5778999999999999996 55543333 23333 4788999999887665566654
No 472
>KOG0018|consensus
Probab=97.32 E-value=0.00039 Score=55.41 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 3 ISSRGGQQRRVSFAVALMHD----PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~----p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
.+||||+|--.+||..++-+ +++++|||.-++||..+..++...|+ ..+.-+|++|=-..+...+|-.
T Consensus 1050 ~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr----~~~~Q~IvISLK~~~y~kadaL 1121 (1141)
T KOG0018|consen 1050 DNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR----SSNFQFIVISLKEEFYQKADAL 1121 (1141)
T ss_pred hhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh----cCCceEEEEeccHHHhhhhhce
Confidence 47999999999999888754 69999999999999999999998887 2356788888776676666654
No 473
>PF13514 AAA_27: AAA domain
Probab=97.18 E-value=0.0015 Score=52.24 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHH------HHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 2 EISSRGGQQRRVS------FAVAL-MHDPEL-LILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 2 ~~~lS~G~kqrv~------laral-~~~p~~-lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
+..||.|.+=.+. ++..+ -.++++ +|+|+||-+.|..-...++++|.++.++ .-||+-||+...+.
T Consensus 1023 ~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~--~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1023 VEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRR--RQVIYFTCHEHLVE 1096 (1111)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccC--CeEEEEeccHHHHH
Confidence 3469999976554 44455 345566 8999999999999999999999998653 46888888877665
No 474
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.0016 Score=49.55 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHhc---CC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 4 SSRGGQQRRVSFAVALMH---DP-----ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~---~p-----~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
.||-|++.-++++-.|+. +| +++++|.|.+.+|..-....+..++..+. .++-||+-|||-.+++
T Consensus 529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t-~~kQviVLtHntYF~r 601 (758)
T COG4694 529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKT-NIKQVIVLTHNTYFYR 601 (758)
T ss_pred cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHh-CceEEEEEeccceehH
Confidence 599999999998877654 44 57899999999999999999999998865 4899999999976654
No 475
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=97.15 E-value=0.0037 Score=49.12 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecCHHHHHh
Q psy5634 5 SRGGQQRRVSFAVAL--MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTHYIEEARQ 70 (79)
Q Consensus 5 lS~G~kqrv~laral--~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-~g~tvi~~tH~~~~~~~ 70 (79)
+|-=+.....++..| +.++.++|+||+..|.++.....+...+.+...+ .|..++++||..+....
T Consensus 652 ~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l 720 (840)
T TIGR01070 652 RSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTAL 720 (840)
T ss_pred cchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHH
Confidence 344444444444444 4678999999999999988888865555444333 57889999999876543
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.13 E-value=0.00094 Score=49.03 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q psy5634 2 EISSRGGQQRRVSFAVALM-------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAH 72 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~-------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d 72 (79)
..+.|.|+|+|++.+.+.+ .++-++++|+||+..|+. +++...+.+... .|.+..+.||.....+++.
T Consensus 219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~L~ERag 293 (432)
T PRK06793 219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKKLLERSG 293 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchhHHHHhc
Confidence 3578999999999998877 789999999999999986 566555555533 4788888888766666654
No 477
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.96 E-value=0.021 Score=33.04 Aligned_cols=61 Identities=33% Similarity=0.375 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-----HHHHHHhcCCcEEEEEecC
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN-----HLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~-----~l~~~~~~~g~tvi~~tH~ 64 (79)
..++++..+..+.++-..+|.++++||+..-.+......... .........+..+|+++|.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 356677888888888888889999999999999888776553 1222233456888888884
No 478
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.93 E-value=0.00017 Score=53.10 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 4 SSRGGQQRRVSFA--VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 4 ~lS~G~kqrv~la--ral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.+|+|++||+.|+ .++...|+.. ...++.+++++..+. +.|.|+|+++|+.+.
T Consensus 115 ~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 115 AIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLK-QIGVTTVMTTERIEE 169 (484)
T ss_pred HHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHH-HCCCEEEEEecCccc
Confidence 4566666666666 3444443332 456778888887764 458999999998764
No 479
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.77 E-value=0.0037 Score=43.58 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
.-.+..+|-.+|+++++|||.+ .+.+..+.... .++.+++.++|..+.....+++
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~~~~~~~Rl 262 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHAGSPEEAFEQL 262 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeCCCHHHHHHHH
Confidence 3456778999999999999996 34456666553 4345679999988755445554
No 480
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0052 Score=44.33 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 4 SSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 4 ~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
-.|-||++-+.++.-|+ ..+++++|||-++-||+.-+..+++. . +.+.-+++++-+.+...
T Consensus 275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~----~~~~Q~fvT~t~~~~~~ 344 (363)
T COG1195 275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-I----ELGVQVFVTTTDLEDID 344 (363)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-c----ccCCeEEEEccCHHHhh
Confidence 47999999999887665 47899999999999999999988775 2 22455667666665544
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.62 E-value=0.005 Score=43.55 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 13 VSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 13 v~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
-++.++|-.+|+++++||+. |+.+....++ .+ ..|.+++.+.|-.+.....+++
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa-~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELALT----AA-ETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-HcCCcEEEEEcCCCHHHHHHHH
Confidence 35778899999999999996 7776654433 22 3488899999986655444554
No 482
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.57 E-value=0.00075 Score=43.53 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH--HH-hhccee
Q psy5634 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE--AR-QAHTVI 75 (79)
Q Consensus 7 ~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~--~~-~~d~i~ 75 (79)
.|+-.|..|+.++..+|+.+..+| +.+||...+.+.+.+.+.. +.|.+|++.+|.+.+ .. .+|.++
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv 128 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVI 128 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEE
Confidence 477889999999999999988777 8899999999999888764 346789999998865 22 366654
No 483
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.32 E-value=0.0034 Score=51.91 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHh--------c--------CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 2 EISSRGGQQRRVSFAVALM--------H--------DP-ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~--------~--------~p-~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
.+.||||||..+.+...++ . -| ++++|||. +++|..+...+++.+..+ |.-+||+|
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~----~~q~i~~t 1435 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL----DMQLLIAA 1435 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc----CCcEEEec
Confidence 4679999999888776665 1 12 45699999 999999999998887643 55566655
No 484
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.26 E-value=0.011 Score=43.26 Aligned_cols=49 Identities=8% Similarity=0.308 Sum_probs=36.0
Q ss_pred cCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhcCCcEEEEEe-cCHHHHHh
Q psy5634 21 HDPELLILDEPTVGVDPL-LRQSIWNHLVQITKDGNKTVIITT-HYIEEARQ 70 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~-~~~~i~~~l~~~~~~~g~tvi~~t-H~~~~~~~ 70 (79)
.+|++|++|||...++.. ..++++..+..+.+. |..+|++| |++.....
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~-~k~iIitsd~~p~~l~~ 243 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSE 243 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc-CCeEEEECCCCHHHHHH
Confidence 379999999999888765 446788888777554 56677766 77766543
No 485
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.25 E-value=0.017 Score=45.42 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHH---HHHH----hc----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 3 ISSRGGQQRRVSF---AVAL----MH----DP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 3 ~~lS~G~kqrv~l---aral----~~----~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..+|||||++++. |.+| +. .| ..+||||.|+--|+.....++..+.++ |.-.+++|-.
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f----glh~v~iTPl 1059 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF----GLHAVFITPL 1059 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc----CceEEEechH
Confidence 3689999999864 3333 32 22 479999999999999999999888765 6778888854
No 486
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.03 E-value=0.019 Score=42.32 Aligned_cols=45 Identities=27% Similarity=0.281 Sum_probs=35.6
Q ss_pred CC--CCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEecCHHHHHhhccee
Q psy5634 30 EP--TVGVDPLLRQSIWNHLVQITK-DGNK-----TVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 30 EP--~~glD~~~~~~i~~~l~~~~~-~~g~-----tvi~~tH~~~~~~~~d~i~ 75 (79)
|| ++|+||.....+.+++.+..+ +.|. ||++.+||+++ .-+|++.
T Consensus 273 e~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~ 325 (438)
T PRK07721 273 EPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVR 325 (438)
T ss_pred CCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEE
Confidence 76 799999999999999998753 3474 99999999985 3356543
No 487
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.018 Score=43.90 Aligned_cols=47 Identities=28% Similarity=0.505 Sum_probs=40.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh
Q psy5634 23 PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQA 71 (79)
Q Consensus 23 p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~ 71 (79)
|.++|.+||-+.|-|..+..+++.+..+. .+.-+|++||...++..+
T Consensus 302 ~~ILLiEEPEahLHPq~q~~l~~ll~~l~--~~~Q~IvTThS~~~~s~~ 348 (581)
T COG3593 302 PNILLIEEPEAHLHPQLQAVLWDLLNNLP--LGLQRIVTTHSPHLLSLA 348 (581)
T ss_pred cceEEEeCchhhcCHHHHHHHHHHHhcCC--cceEEEEEcCCccccccc
Confidence 44999999999999999998888887764 468999999999887653
No 488
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=95.61 E-value=0.057 Score=40.00 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH---------------HHHHHHHHhcCCcEEEEEecCHH-H
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI---------------WNHLVQITKDGNKTVIITTHYIE-E 67 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i---------------~~~l~~~~~~~g~tvi~~tH~~~-~ 67 (79)
+=||-.-|-..|..||-.++++||+||=|++-..-.+... .+.++++.++.|.+.|+|.=-.. .
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy 401 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDY 401 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhh
Confidence 3488889999999999999999999999999876654333 33345555666876666665444 4
Q ss_pred HHhhccee
Q psy5634 68 ARQAHTVI 75 (79)
Q Consensus 68 ~~~~d~i~ 75 (79)
...+|+++
T Consensus 402 ~~vAD~Vi 409 (448)
T PF09818_consen 402 FDVADRVI 409 (448)
T ss_pred HhhCCEEE
Confidence 45588865
No 489
>PRK06893 DNA replication initiation factor; Validated
Probab=95.57 E-value=0.04 Score=36.77 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=32.0
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 20 MHDPELLILDEPTVGV-DPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 20 ~~~p~~lllDEP~~gl-D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
..+++++++||+.... +......++.++.+..+ .|.+++++|++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~-~~~~illits~~ 134 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE-QGKTLLLISADC 134 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH-cCCcEEEEeCCC
Confidence 3578999999998754 56666678888877644 466776666553
No 490
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.49 E-value=0.07 Score=31.20 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEecCHH
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK----DGNKTVIITTHYIE 66 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~----~~g~tvi~~tH~~~ 66 (79)
..........++.++++||.-.. ++.....+.+.+..... ..+..+|+++++..
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 34455667778999999998665 55666777777777643 24788999988654
No 491
>COG1106 Predicted ATPases [General function prediction only]
Probab=95.35 E-value=0.088 Score=38.17 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 4 SSRGGQQRRVSFAVALMH-DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~-~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
..|-|-++...+.-++.. +-.++++||+-++|-|.....+.+.+.+-.......++++||+.....
T Consensus 251 ~~~~G~kk~~~i~~~l~~~~~k~l~iDEie~~lHp~lm~~~l~~~~~~~~~~niq~~~TTH~~e~id 317 (371)
T COG1106 251 EEGEGFKKALIIVPLLSDLNDKVLLIDEIENGLHPSLMILILETLEDKVKNNNIQVFLTTHSTEFID 317 (371)
T ss_pred eecchHHHHHHHHhhhhhcCCceEEeehhhhccCHHHHHHHHHHHHhhcccceEEEEeecccHHHHH
Confidence 457788888877666554 448999999999999999999999998876655688999999987654
No 492
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.29 E-value=0.039 Score=37.14 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=36.7
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCH-------H-HHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 11 RRVSFAVALM--HDPELLILDEPTVGVDP-------L-LRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 11 qrv~laral~--~~p~~lllDEP~~glD~-------~-~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
..+..++.++ .+|+++++|..+.-.+. . ....+...|+.++++.+.|+++++|-.
T Consensus 127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred HHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 3344444444 47999999986543322 1 234566677788788899999999854
No 493
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.28 E-value=0.13 Score=37.39 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH---hcCCcEEEEEecCHHHH
Q psy5634 14 SFAVALMHDPELLILDE----------PTVGVDPLLRQSIWNHLVQIT---KDGNKTVIITTHYIEEA 68 (79)
Q Consensus 14 ~laral~~~p~~lllDE----------P~~glD~~~~~~i~~~l~~~~---~~~g~tvi~~tH~~~~~ 68 (79)
.+..|....|.++++|| +.+|.|......+.+++..+- ...+..+|++||.++.+
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 34456677899999999 456677777777777666542 22367899999987654
No 494
>KOG0250|consensus
Probab=95.27 E-value=0.014 Score=46.85 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEecCHHHHHhhcce
Q psy5634 2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGN-KTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH~~~~~~~~d~i 74 (79)
...||||+|.-+.++..|. ...++..|||=---+|..++...+++|.+.+.+.+ -.|+++-|++..+...+.|
T Consensus 987 ~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~l~~~~~i 1064 (1074)
T KOG0250|consen 987 TRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFITPQDISKLNSDDGI 1064 (1074)
T ss_pred ccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEccccHhhhccccce
Confidence 4679999999888877664 47899999999999999999999999999876554 5677777888777665544
No 495
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.05 Score=38.80 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=42.4
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 15 FAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 15 laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
+++....+-.++|..+|-+.|.|..+..+.+++.+.+. .|.-+++-||.-..+
T Consensus 253 L~lli~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~-~gvqvVveTHSdhii 305 (374)
T COG4938 253 LMLLIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAA-RGVQVVVETHSDHII 305 (374)
T ss_pred HHeeeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHh-cCcEEEEEechHHHh
Confidence 34434445578889999999999999999999998865 589999999975444
No 496
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.04 E-value=0.079 Score=34.85 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=31.9
Q ss_pred cCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 21 HDPELLILDE-----PTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 21 ~~p~~lllDE-----P~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
.+++.+++|- |+.+.|...++.+.+++..+. +.|.|+++++|.
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk-~~~~tvll~s~~ 153 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLR-ETGVTTILTSEA 153 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHH-hCCCEEEEEEcc
Confidence 3689999993 344555666777888887774 558999999995
No 497
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.68 E-value=0.094 Score=33.76 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=41.8
Q ss_pred HHHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH--HHhhccee
Q psy5634 13 VSFAVALM--HDPELLILDEPTVG--VDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE--ARQAHTVI 75 (79)
Q Consensus 13 v~laral~--~~p~~lllDEP~~g--lD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~--~~~~d~i~ 75 (79)
...|+..+ .+.++++|||-... ++....+.+.+.+.+ +..+..+|++.++... ...+|.|-
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~--rp~~~evIlTGr~~p~~l~e~AD~VT 150 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA--KPEDLELVLTGRNAPKELIEAADLVT 150 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCceee
Confidence 34444444 45799999998765 445566778887775 3447899999999753 34477653
No 498
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=94.09 E-value=0.17 Score=38.97 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=38.4
Q ss_pred hcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 20 MHDPELLILDEPTVGVD-PLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD-~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
-..|.++++||.-.-++ +...+.+.+.++.. ++.|..++++||++..+.
T Consensus 627 ~~~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~-RK~~~~~~~~TQ~~~d~~ 676 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGNPVFAAKIRDWLKTL-RKANGIVVLATQSINDAL 676 (785)
T ss_pred CCCCeEEEEechhhhcCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHh
Confidence 45789999999877775 76777777776665 556889999999998764
No 499
>PRK04296 thymidine kinase; Provisional
Probab=93.72 E-value=0.28 Score=31.85 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=27.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
.+++++++||- --++. +++.+++..+ +..|.+||++.++
T Consensus 77 ~~~dvviIDEa-q~l~~---~~v~~l~~~l-~~~g~~vi~tgl~ 115 (190)
T PRK04296 77 EKIDCVLIDEA-QFLDK---EQVVQLAEVL-DDLGIPVICYGLD 115 (190)
T ss_pred CCCCEEEEEcc-ccCCH---HHHHHHHHHH-HHcCCeEEEEecC
Confidence 37899999998 22443 3355555544 4458999999999
No 500
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.62 E-value=0.19 Score=31.87 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHh--cCCCEEEEeCCCC----CCCH-HHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 15 FAVALM--HDPELLILDEPTV----GVDP-LLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 15 laral~--~~p~~lllDEP~~----glD~-~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
+...+. .+|+++++|--++ +-+. .....+++.+++++++.|.+|+++.|--
T Consensus 132 l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 189 (193)
T PF13481_consen 132 LEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHTN 189 (193)
T ss_dssp HHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE-
T ss_pred HHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 344444 3799999994322 2222 2235788888888877799999998853
Done!