Query psy5634
Match_columns 79
No_of_seqs 212 out of 1439
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:40:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 8.3E-30 2.8E-34 169.6 8.9 75 2-76 143-217 (235)
2 3tui_C Methionine import ATP-b 100.0 6E-29 2.1E-33 175.2 10.5 76 1-76 160-236 (366)
3 2pcj_A ABC transporter, lipopr 100.0 9.4E-29 3.2E-33 163.4 9.5 74 2-76 138-211 (224)
4 3gfo_A Cobalt import ATP-bindi 100.0 3.6E-29 1.2E-33 170.3 7.2 75 2-76 141-216 (275)
5 1b0u_A Histidine permease; ABC 100.0 1.1E-28 3.7E-33 166.4 9.4 74 2-76 151-225 (262)
6 4g1u_C Hemin import ATP-bindin 100.0 1.1E-28 3.6E-33 167.0 8.7 75 2-76 139-220 (266)
7 2onk_A Molybdate/tungstate ABC 100.0 7.8E-29 2.7E-33 165.6 7.8 75 2-76 124-199 (240)
8 2olj_A Amino acid ABC transpor 100.0 2E-28 6.8E-33 165.7 9.8 74 2-76 157-231 (263)
9 1ji0_A ABC transporter; ATP bi 100.0 2.9E-28 9.9E-33 162.4 10.3 74 2-76 137-211 (240)
10 3fvq_A Fe(3+) IONS import ATP- 100.0 2.1E-28 7.1E-33 172.0 9.7 76 1-76 135-211 (359)
11 1g6h_A High-affinity branched- 100.0 1.1E-28 3.7E-33 165.8 7.8 74 2-76 151-225 (257)
12 2nq2_C Hypothetical ABC transp 100.0 3E-28 1E-32 163.8 9.6 75 2-76 126-201 (253)
13 2ixe_A Antigen peptide transpo 100.0 2.5E-28 8.6E-33 165.4 9.1 75 2-76 154-228 (271)
14 3rlf_A Maltose/maltodextrin im 99.9 3.3E-28 1.1E-32 172.1 8.9 76 1-76 130-206 (381)
15 1vpl_A ABC transporter, ATP-bi 99.9 7.6E-28 2.6E-32 162.2 9.6 74 2-76 144-218 (256)
16 3d31_A Sulfate/molybdate ABC t 99.9 6.7E-28 2.3E-32 168.7 9.6 76 1-76 124-200 (348)
17 1z47_A CYSA, putative ABC-tran 99.9 5.3E-28 1.8E-32 169.6 9.0 76 1-76 142-218 (355)
18 2yz2_A Putative ABC transporte 99.9 5.5E-28 1.9E-32 163.2 8.2 74 2-76 136-210 (266)
19 2yyz_A Sugar ABC transporter, 99.9 7.9E-28 2.7E-32 168.9 9.2 76 1-76 130-206 (359)
20 1g29_1 MALK, maltose transport 99.9 8.9E-28 3E-32 169.2 9.2 76 1-76 136-212 (372)
21 1oxx_K GLCV, glucose, ABC tran 99.9 5.4E-28 1.8E-32 169.3 8.0 75 2-76 138-213 (353)
22 2ff7_A Alpha-hemolysin translo 99.9 1.4E-27 4.7E-32 159.9 9.4 73 2-76 143-215 (247)
23 2it1_A 362AA long hypothetical 99.9 7.8E-28 2.7E-32 169.1 8.0 75 2-76 131-206 (362)
24 1v43_A Sugar-binding transport 99.9 1.2E-27 4E-32 168.7 8.4 76 1-76 138-214 (372)
25 2ihy_A ABC transporter, ATP-bi 99.9 9.9E-28 3.4E-32 163.3 6.7 74 2-76 159-235 (279)
26 2d2e_A SUFC protein; ABC-ATPas 99.9 1.2E-27 4.1E-32 160.2 6.9 74 2-76 140-216 (250)
27 2ghi_A Transport protein; mult 99.9 2.7E-27 9.2E-32 159.5 8.5 73 2-76 153-225 (260)
28 2qi9_C Vitamin B12 import ATP- 99.9 3.2E-27 1.1E-31 158.6 8.5 74 2-76 124-205 (249)
29 3nh6_A ATP-binding cassette SU 99.9 6.1E-27 2.1E-31 161.5 10.1 73 2-76 188-260 (306)
30 2zu0_C Probable ATP-dependent 99.9 2.6E-27 8.9E-32 160.1 7.8 72 4-76 164-237 (267)
31 1mv5_A LMRA, multidrug resista 99.9 1.5E-27 5E-32 159.1 6.4 73 2-76 137-209 (243)
32 1sgw_A Putative ABC transporte 99.9 9.5E-28 3.2E-32 158.3 4.1 73 2-75 131-204 (214)
33 3ozx_A RNAse L inhibitor; ATP 99.9 9.8E-27 3.3E-31 169.8 9.5 75 2-76 383-458 (538)
34 2pze_A Cystic fibrosis transme 99.9 8.2E-27 2.8E-31 154.5 7.3 73 2-76 128-201 (229)
35 2cbz_A Multidrug resistance-as 99.9 7.4E-27 2.5E-31 155.5 6.3 73 2-76 125-200 (237)
36 3j16_B RLI1P; ribosome recycli 99.9 2.1E-26 7.3E-31 170.1 9.2 75 2-76 465-540 (608)
37 2pjz_A Hypothetical protein ST 99.9 2.6E-26 8.9E-31 155.3 7.9 71 2-76 126-198 (263)
38 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 8.6E-26 2.9E-30 142.1 8.8 74 2-76 55-134 (148)
39 1yqt_A RNAse L inhibitor; ATP- 99.9 6.6E-26 2.3E-30 165.2 8.8 75 2-76 399-474 (538)
40 1yqt_A RNAse L inhibitor; ATP- 99.9 1.4E-25 4.9E-30 163.5 9.6 74 2-76 156-230 (538)
41 3bk7_A ABC transporter ATP-bin 99.9 1.5E-25 5.3E-30 165.4 9.5 75 2-76 469-544 (607)
42 2bbs_A Cystic fibrosis transme 99.9 7.6E-26 2.6E-30 154.8 7.1 73 2-76 157-230 (290)
43 3bk7_A ABC transporter ATP-bin 99.9 2.4E-25 8.1E-30 164.4 9.6 74 2-76 226-300 (607)
44 2yl4_A ATP-binding cassette SU 99.9 3.5E-25 1.2E-29 162.2 10.3 73 2-76 481-553 (595)
45 3qf4_A ABC transporter, ATP-bi 99.9 3.3E-25 1.1E-29 162.4 10.2 73 2-76 477-549 (587)
46 3b5x_A Lipid A export ATP-bind 99.9 3E-25 1E-29 162.2 9.7 73 2-76 478-550 (582)
47 3ux8_A Excinuclease ABC, A sub 99.9 1.7E-25 5.9E-30 165.5 8.4 74 2-76 200-275 (670)
48 3b60_A Lipid A export ATP-bind 99.9 2.7E-25 9.2E-30 162.5 9.2 73 2-76 478-550 (582)
49 3ux8_A Excinuclease ABC, A sub 99.9 3.9E-25 1.3E-29 163.6 9.7 74 2-76 541-617 (670)
50 4a82_A Cystic fibrosis transme 99.9 3.3E-25 1.1E-29 162.0 8.3 73 2-76 475-547 (578)
51 3qf4_B Uncharacterized ABC tra 99.9 4E-25 1.4E-29 162.2 8.3 72 3-76 490-561 (598)
52 3j16_B RLI1P; ribosome recycli 99.9 9.7E-25 3.3E-29 161.2 10.0 75 1-76 218-293 (608)
53 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 7.8E-25 2.7E-29 153.1 8.8 74 2-76 277-356 (365)
54 3ozx_A RNAse L inhibitor; ATP 99.9 8.2E-25 2.8E-29 159.7 9.0 72 2-75 136-208 (538)
55 3gd7_A Fusion complex of cysti 99.9 2.2E-25 7.6E-30 157.8 4.7 71 4-76 155-225 (390)
56 3pih_A Uvrabc system protein A 99.9 1E-23 3.4E-28 161.3 10.1 74 2-76 803-879 (916)
57 3g5u_A MCG1178, multidrug resi 99.9 2E-23 6.7E-28 163.2 7.6 73 2-76 1169-1241(1284)
58 3pih_A Uvrabc system protein A 99.9 2.6E-23 9E-28 159.0 7.7 74 2-76 462-537 (916)
59 3g5u_A MCG1178, multidrug resi 99.9 6.5E-23 2.2E-27 160.3 10.1 73 2-76 524-596 (1284)
60 4aby_A DNA repair protein RECN 99.9 1.3E-22 4.3E-27 141.7 9.8 70 5-76 296-367 (415)
61 2iw3_A Elongation factor 3A; a 99.9 7.7E-23 2.6E-27 157.3 9.2 71 2-76 546-617 (986)
62 2vf7_A UVRA2, excinuclease ABC 99.9 6.9E-23 2.4E-27 155.7 8.5 74 2-76 728-804 (842)
63 2r6f_A Excinuclease ABC subuni 99.9 1E-22 3.5E-27 156.3 9.3 74 2-76 843-919 (972)
64 4f4c_A Multidrug resistance pr 99.9 4E-23 1.4E-27 161.8 5.9 73 2-76 1215-1287(1321)
65 2ygr_A Uvrabc system protein A 99.9 1.8E-22 6.3E-27 155.2 9.2 74 2-76 861-937 (993)
66 4f4c_A Multidrug resistance pr 99.9 7.8E-23 2.7E-27 160.2 7.2 73 2-76 552-624 (1321)
67 2iw3_A Elongation factor 3A; a 99.9 8.8E-23 3E-27 157.0 7.2 71 2-76 899-970 (986)
68 3kta_B Chromosome segregation 99.9 4.3E-22 1.5E-26 127.9 9.3 72 2-75 62-137 (173)
69 4ad8_A DNA repair protein RECN 99.9 1.9E-22 6.3E-27 145.7 7.9 73 2-76 394-469 (517)
70 3qkt_A DNA double-strand break 99.9 3.6E-22 1.2E-26 137.9 8.7 73 2-75 246-324 (339)
71 2r6f_A Excinuclease ABC subuni 99.9 3.4E-22 1.2E-26 153.4 8.3 74 2-76 502-577 (972)
72 2ygr_A Uvrabc system protein A 99.9 5.9E-22 2E-26 152.4 9.6 74 2-76 519-594 (993)
73 2vf7_A UVRA2, excinuclease ABC 99.9 9.3E-22 3.2E-26 149.5 8.0 74 2-76 377-452 (842)
74 4gp7_A Metallophosphoesterase; 99.8 2.1E-22 7.3E-27 127.4 2.3 72 3-75 82-169 (171)
75 1e69_A Chromosome segregation 99.8 3.1E-21 1.1E-25 132.3 7.9 71 2-74 217-291 (322)
76 1w1w_A Structural maintenance 99.8 1E-19 3.6E-24 128.6 9.0 72 3-75 332-407 (430)
77 3auy_A DNA double-strand break 99.8 4.2E-19 1.4E-23 123.8 8.6 72 2-75 278-356 (371)
78 1ye8_A Protein THEP1, hypothet 99.8 1.5E-19 5.2E-24 115.8 5.0 68 2-73 74-152 (178)
79 2o5v_A DNA replication and rep 99.7 6.4E-18 2.2E-22 118.5 6.0 65 4-75 265-338 (359)
80 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.6E-18 5.5E-23 124.7 0.5 66 3-73 234-313 (460)
81 3b85_A Phosphate starvation-in 99.7 1.1E-18 3.8E-23 114.3 -3.4 56 8-70 108-163 (208)
82 1tf7_A KAIC; homohexamer, hexa 99.6 4.7E-16 1.6E-20 112.4 3.1 72 2-75 351-438 (525)
83 3thx_B DNA mismatch repair pro 99.6 6.8E-15 2.3E-19 112.9 7.6 71 2-73 733-804 (918)
84 3thx_A DNA mismatch repair pro 99.5 4.2E-14 1.4E-18 108.6 9.3 72 3-74 720-794 (934)
85 1tq4_A IIGP1, interferon-induc 99.5 4.9E-16 1.7E-20 110.7 -4.3 71 5-75 155-248 (413)
86 2o8b_B DNA mismatch repair pro 99.4 5.6E-13 1.9E-17 103.2 8.4 71 3-74 850-922 (1022)
87 1cr0_A DNA primase/helicase; R 99.4 1.2E-12 4.1E-17 87.9 7.1 62 3-65 128-197 (296)
88 1nlf_A Regulatory protein REPA 99.3 1.3E-12 4.5E-17 87.3 5.6 64 2-68 116-184 (279)
89 2w0m_A SSO2452; RECA, SSPF, un 99.3 3.6E-12 1.2E-16 81.5 6.9 72 5-76 104-188 (235)
90 1znw_A Guanylate kinase, GMP k 99.3 5E-14 1.7E-18 90.8 -2.8 72 5-76 121-200 (207)
91 2pt7_A CAG-ALFA; ATPase, prote 99.3 1.2E-12 4.1E-17 90.5 3.5 61 7-75 225-285 (330)
92 1ewq_A DNA mismatch repair pro 99.2 8E-12 2.7E-16 94.5 6.1 63 4-70 635-703 (765)
93 1wb9_A DNA mismatch repair pro 99.2 1.7E-11 5.7E-16 93.1 6.3 70 3-73 668-738 (800)
94 2ehv_A Hypothetical protein PH 99.2 2.3E-11 7.8E-16 78.8 4.3 59 9-68 122-185 (251)
95 1z6g_A Guanylate kinase; struc 99.1 6.1E-14 2.1E-18 91.5 -8.5 72 4-75 122-205 (218)
96 2cvh_A DNA repair and recombin 99.1 2.3E-10 7.8E-15 72.9 6.3 63 4-66 84-157 (220)
97 3b9q_A Chloroplast SRP recepto 99.0 7.7E-11 2.6E-15 80.7 1.8 50 4-63 204-255 (302)
98 2eyu_A Twitching motility prot 99.0 6.5E-10 2.2E-14 74.6 5.6 56 12-75 88-143 (261)
99 4a74_A DNA repair and recombin 99.0 2.5E-10 8.7E-15 73.0 3.1 70 6-75 101-195 (231)
100 1pzn_A RAD51, DNA repair and r 99.0 6.4E-10 2.2E-14 77.2 5.2 63 6-68 208-289 (349)
101 3sop_A Neuronal-specific septi 99.0 5.1E-11 1.8E-15 80.3 -0.8 56 3-67 97-152 (270)
102 2og2_A Putative signal recogni 99.0 2.7E-10 9.1E-15 79.9 2.8 51 4-64 261-313 (359)
103 3jvv_A Twitching mobility prot 98.9 3E-09 1E-13 74.3 5.3 55 14-76 188-242 (356)
104 1tf7_A KAIC; homohexamer, hexa 98.7 2.6E-08 8.9E-13 72.0 7.1 65 11-76 126-206 (525)
105 3aez_A Pantothenate kinase; tr 98.7 9.8E-11 3.4E-15 80.5 -5.8 57 3-68 175-231 (312)
106 2qnr_A Septin-2, protein NEDD5 98.7 4.3E-10 1.5E-14 76.6 -2.8 56 3-66 112-168 (301)
107 2v9p_A Replication protein E1; 98.6 3.5E-11 1.2E-15 82.8 -10.0 51 2-74 198-248 (305)
108 2obl_A ESCN; ATPase, hydrolase 98.6 2.1E-09 7.2E-14 74.8 -1.2 61 3-74 170-236 (347)
109 1pui_A ENGB, probable GTP-bind 98.6 1.6E-08 5.4E-13 63.9 2.3 50 4-53 149-199 (210)
110 3ec2_A DNA replication protein 98.6 2.1E-07 7.3E-12 58.0 7.3 47 19-66 97-144 (180)
111 2i3b_A HCR-ntpase, human cance 98.6 2.1E-09 7.3E-14 69.2 -2.3 45 4-48 83-133 (189)
112 2dpy_A FLII, flagellum-specifi 98.6 5.8E-09 2E-13 74.6 -0.4 53 4-66 258-318 (438)
113 3asz_A Uridine kinase; cytidin 98.4 1.2E-11 4.2E-16 79.0 -15.3 64 2-65 87-161 (211)
114 1rj9_A FTSY, signal recognitio 98.3 9.4E-08 3.2E-12 65.4 1.2 56 5-67 203-260 (304)
115 1sxj_E Activator 1 40 kDa subu 98.3 6.8E-07 2.3E-11 60.5 5.2 45 19-66 131-175 (354)
116 1n0w_A DNA repair protein RAD5 98.3 1.1E-06 3.8E-11 56.4 5.8 48 21-68 118-177 (243)
117 2jeo_A Uridine-cytidine kinase 98.3 3.8E-08 1.3E-12 64.6 -1.5 53 2-66 114-166 (245)
118 2kjq_A DNAA-related protein; s 98.2 1.7E-06 5.8E-11 53.4 5.1 44 19-64 80-124 (149)
119 1lw7_A Transcriptional regulat 98.2 1.7E-07 6E-12 64.7 -0.0 60 5-64 259-328 (365)
120 3szr_A Interferon-induced GTP- 98.2 3.8E-07 1.3E-11 67.3 1.7 49 20-68 144-199 (608)
121 2ewv_A Twitching motility prot 98.1 3.8E-06 1.3E-10 58.7 5.3 56 12-75 199-254 (372)
122 2qag_C Septin-7; cell cycle, c 98.1 4E-07 1.4E-11 64.8 -0.5 57 5-67 119-179 (418)
123 1nij_A Hypothetical protein YJ 98.0 7.1E-07 2.4E-11 60.9 -0.6 49 4-65 141-189 (318)
124 3lda_A DNA repair protein RAD5 98.0 9.5E-06 3.2E-10 57.4 4.8 45 21-65 272-328 (400)
125 2bbw_A Adenylate kinase 4, AK4 97.9 2.4E-07 8.1E-12 60.6 -4.0 35 17-51 158-197 (246)
126 1udx_A The GTP-binding protein 97.9 4.3E-06 1.5E-10 59.5 2.1 56 3-63 251-306 (416)
127 2dr3_A UPF0273 protein PH0284; 97.8 4.4E-05 1.5E-09 48.8 5.9 47 21-67 127-175 (247)
128 1odf_A YGR205W, hypothetical 3 97.8 2E-07 6.8E-12 63.4 -5.6 36 3-38 133-168 (290)
129 2r6a_A DNAB helicase, replicat 97.6 0.00019 6.5E-09 50.9 7.2 59 3-63 294-362 (454)
130 1s96_A Guanylate kinase, GMP k 97.6 0.00015 5.1E-09 47.2 5.7 45 16-70 101-145 (219)
131 3euj_A Chromosome partition pr 97.6 0.00023 7.8E-09 51.7 6.9 57 3-64 378-451 (483)
132 2bdt_A BH3686; alpha-beta prot 97.5 2.8E-07 9.5E-12 57.8 -7.9 65 6-75 96-168 (189)
133 2f1r_A Molybdopterin-guanine d 97.5 8.1E-07 2.8E-11 56.3 -5.8 52 4-55 103-164 (171)
134 2xau_A PRE-mRNA-splicing facto 97.4 5E-05 1.7E-09 57.4 2.4 66 4-70 190-257 (773)
135 2zr9_A Protein RECA, recombina 97.4 0.00032 1.1E-08 48.6 6.2 56 11-66 126-199 (349)
136 2ce7_A Cell division protein F 97.3 0.00049 1.7E-08 49.7 6.2 62 7-68 93-167 (476)
137 1zp6_A Hypothetical protein AT 97.1 2.6E-05 8.8E-10 48.5 -2.0 41 3-51 108-148 (191)
138 1ls1_A Signal recognition part 97.1 0.005 1.7E-07 41.5 8.7 54 7-62 165-219 (295)
139 4a1f_A DNAB helicase, replicat 97.0 0.003 1E-07 43.8 7.3 56 3-63 108-164 (338)
140 2e87_A Hypothetical protein PH 96.9 0.0024 8.1E-08 43.9 6.2 61 3-66 230-293 (357)
141 1vma_A Cell division protein F 96.8 0.00082 2.8E-08 45.9 3.0 30 4-33 165-197 (306)
142 2ius_A DNA translocase FTSK; n 96.8 2.3E-05 8E-10 57.2 -4.9 50 16-66 290-343 (512)
143 1lw7_A Transcriptional regulat 96.8 0.00085 2.9E-08 46.2 3.0 29 4-32 296-329 (365)
144 2qag_B Septin-6, protein NEDD5 96.6 0.0017 6E-08 46.4 3.8 53 13-65 167-219 (427)
145 2px0_A Flagellar biosynthesis 96.1 0.0063 2.2E-07 41.1 4.2 54 12-70 174-231 (296)
146 2z4s_A Chromosomal replication 95.9 0.016 5.4E-07 41.0 5.7 44 21-65 193-237 (440)
147 1oix_A RAS-related protein RAB 95.9 0.0017 6E-08 40.3 0.5 38 11-50 152-189 (191)
148 3b9p_A CG5977-PA, isoform A; A 95.5 0.05 1.7E-06 35.7 6.5 61 6-66 97-170 (297)
149 3e70_C DPA, signal recognition 95.5 0.019 6.4E-07 39.5 4.5 49 10-65 231-279 (328)
150 3bh0_A DNAB-like replicative h 95.4 0.03 1E-06 37.8 5.3 55 5-64 134-190 (315)
151 2gza_A Type IV secretion syste 95.4 0.011 3.8E-07 40.8 3.0 61 6-74 236-296 (361)
152 1fnn_A CDC6P, cell division co 95.3 0.02 6.8E-07 38.5 4.1 47 21-68 124-172 (389)
153 2z43_A DNA repair and recombin 94.6 0.031 1.1E-06 37.8 3.5 56 11-66 189-259 (324)
154 2qm8_A GTPase/ATPase; G protei 94.5 0.018 6.1E-07 39.5 2.2 45 4-52 210-260 (337)
155 1v5w_A DMC1, meiotic recombina 94.3 0.061 2.1E-06 36.8 4.5 56 12-67 205-276 (343)
156 2f9l_A RAB11B, member RAS onco 94.1 0.036 1.2E-06 34.2 2.9 37 13-51 130-166 (199)
157 1ni3_A YCHF GTPase, YCHF GTP-b 94.1 0.00024 8.2E-09 50.2 -8.1 52 22-75 139-193 (392)
158 1g5t_A COB(I)alamin adenosyltr 93.6 0.054 1.8E-06 35.0 2.9 64 10-75 106-175 (196)
159 2oap_1 GSPE-2, type II secreti 93.5 7.2E-06 2.5E-10 59.6 -17.2 54 4-70 400-455 (511)
160 1u94_A RECA protein, recombina 93.3 0.32 1.1E-05 33.6 6.8 56 11-66 128-201 (356)
161 3szr_A Interferon-induced GTP- 93.1 0.065 2.2E-06 39.5 3.2 55 8-63 169-223 (608)
162 1lvg_A Guanylate kinase, GMP k 93.0 0.0017 5.9E-08 41.0 -4.7 51 18-68 120-177 (198)
163 3hr8_A Protein RECA; alpha and 92.9 0.78 2.7E-05 31.8 8.3 54 11-64 126-197 (356)
164 2eyu_A Twitching motility prot 92.6 2.6E-05 8.9E-10 52.1 -14.3 56 4-63 172-238 (261)
165 3c8u_A Fructokinase; YP_612366 92.3 0.00027 9.2E-09 44.9 -9.2 29 4-32 111-140 (208)
166 3k1j_A LON protease, ATP-depen 92.2 0.023 7.8E-07 41.6 -0.3 46 3-49 182-227 (604)
167 1l8q_A Chromosomal replication 92.0 0.53 1.8E-05 31.2 6.3 44 20-64 96-140 (324)
168 1in4_A RUVB, holliday junction 91.9 0.012 4E-07 40.0 -2.0 47 2-69 160-206 (334)
169 2x8a_A Nuclear valosin-contain 91.4 0.0011 3.9E-08 44.1 -7.4 42 4-47 137-190 (274)
170 2qby_A CDC6 homolog 1, cell di 91.1 0.14 4.8E-06 34.1 2.6 45 22-67 128-175 (386)
171 1njg_A DNA polymerase III subu 90.5 0.36 1.2E-05 29.5 4.0 42 22-66 126-167 (250)
172 2w58_A DNAI, primosome compone 90.5 0.22 7.4E-06 30.7 3.0 48 20-68 113-163 (202)
173 3t34_A Dynamin-related protein 90.4 0.28 9.4E-06 33.4 3.7 59 4-63 154-212 (360)
174 2q6t_A DNAB replication FORK h 90.4 0.79 2.7E-05 32.2 6.1 50 15-64 301-362 (444)
175 2ewv_A Twitching motility prot 90.4 4.3E-05 1.5E-09 53.3 -15.6 58 5-65 284-351 (372)
176 4ag6_A VIRB4 ATPase, type IV s 90.1 0.37 1.3E-05 33.0 4.1 47 22-69 262-311 (392)
177 1xp8_A RECA protein, recombina 89.9 1.8 6.1E-05 30.0 7.5 56 11-66 139-212 (366)
178 3bos_A Putative DNA replicatio 89.8 0.41 1.4E-05 29.6 3.9 44 21-64 103-147 (242)
179 1sxj_D Activator 1 41 kDa subu 89.5 0.51 1.8E-05 31.2 4.4 42 22-66 133-174 (353)
180 2r8r_A Sensor protein; KDPD, P 89.3 0.25 8.6E-06 32.6 2.7 46 17-63 79-125 (228)
181 1jcn_A Inosine monophosphate d 88.1 0.0046 1.6E-07 44.6 -6.9 46 17-68 28-73 (514)
182 2qgz_A Helicase loader, putati 87.3 0.24 8.3E-06 33.3 1.7 44 20-64 212-257 (308)
183 2i1q_A DNA repair and recombin 87.1 0.66 2.3E-05 30.9 3.7 50 15-64 194-258 (322)
184 3cf0_A Transitional endoplasmi 86.6 1.8 6.2E-05 28.6 5.6 55 13-67 99-166 (301)
185 3h4m_A Proteasome-activating n 86.4 1.1 3.6E-05 28.9 4.3 55 13-67 101-168 (285)
186 1p9r_A General secretion pathw 85.3 0.0085 2.9E-07 42.5 -6.6 23 3-27 292-314 (418)
187 1q57_A DNA primase/helicase; d 84.2 5.6 0.00019 28.1 7.5 54 12-65 342-404 (503)
188 1ega_A Protein (GTP-binding pr 83.8 0.95 3.3E-05 30.1 3.2 56 5-67 101-161 (301)
189 2chg_A Replication factor C sm 83.7 2.5 8.5E-05 25.3 4.9 43 21-66 101-143 (226)
190 2q6t_A DNAB replication FORK h 83.5 5 0.00017 28.0 7.0 55 4-63 264-318 (444)
191 2yhs_A FTSY, cell division pro 82.4 0.87 3E-05 33.3 2.7 48 10-63 398-447 (503)
192 1x52_A Pelota homolog, CGI-17; 82.0 1.8 6.2E-05 25.7 3.7 52 16-68 47-100 (124)
193 3io5_A Recombination and repai 81.9 8.1 0.00028 26.8 7.4 59 8-66 93-173 (333)
194 2b8t_A Thymidine kinase; deoxy 81.2 2.6 8.7E-05 27.3 4.4 37 22-64 89-125 (223)
195 4dgh_A Sulfate permease family 80.6 6.1 0.00021 22.7 7.6 48 19-67 45-93 (130)
196 2rcn_A Probable GTPase ENGC; Y 80.0 0.49 1.7E-05 32.9 0.7 17 2-19 312-328 (358)
197 3d8b_A Fidgetin-like protein 1 79.9 6.9 0.00024 26.4 6.5 55 12-66 166-232 (357)
198 3ny7_A YCHM protein, sulfate t 79.1 6.4 0.00022 22.4 5.4 46 21-68 44-90 (118)
199 3bt7_A TRNA (uracil-5-)-methyl 78.9 3.9 0.00013 27.9 5.0 38 22-68 295-332 (369)
200 3kl4_A SRP54, signal recogniti 78.9 4 0.00014 29.0 5.2 50 14-64 171-223 (433)
201 1jr3_A DNA polymerase III subu 78.7 2.6 8.8E-05 28.0 3.9 42 22-66 119-160 (373)
202 3bh0_A DNAB-like replicative h 78.5 4.9 0.00017 26.8 5.3 50 15-64 170-230 (315)
203 2qtf_A Protein HFLX, GTP-bindi 78.2 0.63 2.2E-05 32.1 0.8 44 5-52 305-353 (364)
204 3llm_A ATP-dependent RNA helic 77.0 5.6 0.00019 25.0 5.1 50 17-67 171-222 (235)
205 1zxx_A 6-phosphofructokinase; 76.8 9.6 0.00033 26.1 6.4 48 12-64 175-223 (319)
206 4fcw_A Chaperone protein CLPB; 75.9 5.2 0.00018 25.8 4.8 36 14-50 110-146 (311)
207 1pfk_A Phosphofructokinase; tr 75.9 10 0.00035 26.0 6.4 48 12-64 176-224 (320)
208 1ypw_A Transitional endoplasmi 75.5 3.1 0.0001 31.6 4.0 57 12-68 287-353 (806)
209 4dgf_A Sulfate transporter sul 75.5 9.5 0.00032 22.0 6.9 47 20-67 49-96 (135)
210 3hu3_A Transitional endoplasmi 75.3 4.7 0.00016 28.9 4.7 54 14-67 289-352 (489)
211 3oiz_A Antisigma-factor antago 75.1 5 0.00017 22.2 4.0 44 20-64 41-85 (99)
212 1jr3_D DNA polymerase III, del 73.9 5.2 0.00018 26.6 4.4 46 17-64 71-116 (343)
213 3co5_A Putative two-component 73.5 11 0.00037 21.8 5.8 40 22-63 75-114 (143)
214 3bgw_A DNAB-like replicative h 73.2 6 0.0002 27.9 4.8 54 5-63 263-318 (444)
215 2vhj_A Ntpase P4, P4; non- hyd 72.4 14 0.00049 25.5 6.4 48 15-63 176-234 (331)
216 2dy1_A Elongation factor G; tr 72.4 9 0.00031 28.4 5.8 44 19-68 96-139 (665)
217 3u61_B DNA polymerase accessor 72.2 7.2 0.00025 25.5 4.8 42 22-66 105-147 (324)
218 3llo_A Prestin; STAS domain, c 72.0 12 0.00041 21.6 7.5 46 21-67 62-108 (143)
219 3o63_A Probable thiamine-phosp 71.9 18 0.00061 23.6 6.6 55 15-70 49-110 (243)
220 2orv_A Thymidine kinase; TP4A 71.9 8.1 0.00028 25.4 4.9 38 21-65 89-126 (234)
221 1iqp_A RFCS; clamp loader, ext 71.6 8.2 0.00028 24.8 4.9 43 21-66 109-151 (327)
222 3cmw_A Protein RECA, recombina 70.1 18 0.00061 30.2 7.4 53 12-64 798-868 (1706)
223 1sxj_B Activator 1 37 kDa subu 68.9 6.3 0.00022 25.3 3.9 42 22-66 107-148 (323)
224 3i42_A Response regulator rece 68.6 12 0.00041 20.3 5.6 42 20-64 45-86 (127)
225 2qz4_A Paraplegin; AAA+, SPG7, 68.5 19 0.00063 22.4 6.9 53 14-66 90-156 (262)
226 1iy2_A ATP-dependent metallopr 67.5 0.018 6.2E-07 37.7 -8.7 26 4-31 169-194 (278)
227 2p65_A Hypothetical protein PF 67.3 0.87 3E-05 26.9 -0.5 45 22-66 115-163 (187)
228 4a1f_A DNAB helicase, replicat 67.0 14 0.00048 25.3 5.5 55 14-68 145-209 (338)
229 1d2n_A N-ethylmaleimide-sensit 66.0 8.8 0.0003 24.5 4.1 54 15-68 117-180 (272)
230 1ixz_A ATP-dependent metallopr 65.5 0.016 5.6E-07 37.3 -9.1 27 4-32 145-171 (254)
231 3cmw_A Protein RECA, recombina 65.1 36 0.0012 28.5 8.1 52 13-64 450-519 (1706)
232 2zts_A Putative uncharacterize 64.9 15 0.0005 22.6 4.9 46 20-65 133-182 (251)
233 3nhm_A Response regulator; pro 64.7 15 0.00051 20.0 6.1 42 19-63 44-85 (133)
234 2dpm_A M.dpnii 1, protein (ade 64.5 27 0.00091 23.2 6.4 48 22-70 187-248 (284)
235 3gl9_A Response regulator; bet 64.2 15 0.00052 20.0 5.3 42 19-63 43-84 (122)
236 2kln_A Probable sulphate-trans 64.0 18 0.00061 20.6 5.2 51 15-66 37-91 (130)
237 3grc_A Sensor protein, kinase; 63.8 16 0.00056 20.1 6.6 44 20-66 48-91 (140)
238 3bgw_A DNAB-like replicative h 63.6 29 0.00098 24.4 6.7 44 21-64 307-359 (444)
239 1a5t_A Delta prime, HOLB; zinc 63.6 6.3 0.00021 26.3 3.1 43 21-66 107-149 (334)
240 3gt7_A Sensor protein; structu 63.6 18 0.00062 20.5 5.8 40 20-62 49-88 (154)
241 2orw_A Thymidine kinase; TMTK, 63.6 5.6 0.00019 24.5 2.7 39 22-66 76-114 (184)
242 2gno_A DNA polymerase III, gam 63.5 5.8 0.0002 26.5 3.0 42 22-66 82-123 (305)
243 2hqs_H Peptidoglycan-associate 63.4 18 0.00062 20.6 4.8 45 20-64 2-46 (118)
244 3q6v_A Beta-lactamase; metallo 63.0 15 0.00051 22.5 4.7 38 23-64 35-72 (233)
245 1jjv_A Dephospho-COA kinase; P 62.7 0.28 9.7E-06 30.3 -3.5 65 6-75 61-128 (206)
246 4b4t_L 26S protease subunit RP 61.6 40 0.0014 23.9 7.3 57 11-67 263-332 (437)
247 2jjq_A Uncharacterized RNA met 61.4 30 0.001 24.2 6.4 41 22-69 353-393 (425)
248 1jql_B DNA polymerase III, del 60.9 10 0.00034 22.2 3.4 43 18-63 72-114 (140)
249 1mb3_A Cell division response 60.8 17 0.00059 19.4 5.2 41 20-63 43-83 (124)
250 3f6p_A Transcriptional regulat 60.3 18 0.00062 19.5 5.6 39 20-64 44-83 (120)
251 3lte_A Response regulator; str 59.9 19 0.00065 19.5 5.5 42 19-63 47-88 (132)
252 3cmu_A Protein RECA, recombina 59.5 41 0.0014 28.8 7.6 53 14-66 800-870 (2050)
253 3n53_A Response regulator rece 59.4 14 0.00049 20.4 3.8 41 20-63 44-84 (140)
254 3lnc_A Guanylate kinase, GMP k 59.3 0.45 1.5E-05 30.1 -3.0 55 20-74 146-205 (231)
255 4eyb_A Beta-lactamase NDM-1; m 59.2 19 0.00064 23.1 4.8 38 23-64 84-121 (270)
256 2v1u_A Cell division control p 58.9 7 0.00024 25.7 2.7 44 22-65 130-177 (387)
257 3t6k_A Response regulator rece 58.5 21 0.00073 19.7 6.3 41 20-63 46-86 (136)
258 1xx6_A Thymidine kinase; NESG, 58.2 11 0.00039 23.5 3.5 38 22-65 81-118 (191)
259 3n70_A Transport activator; si 58.0 17 0.00056 21.0 4.0 40 22-64 76-115 (145)
260 2hig_A 6-phospho-1-fructokinas 57.8 16 0.00056 26.5 4.6 48 12-64 278-326 (487)
261 4b4t_J 26S protease regulatory 57.7 32 0.0011 24.3 6.0 55 13-67 232-299 (405)
262 4h51_A Aspartate aminotransfer 57.7 16 0.00054 25.5 4.4 32 4-37 206-237 (420)
263 3mca_B Protein DOM34, elongati 57.6 26 0.00088 24.5 5.5 43 24-67 310-352 (390)
264 3heb_A Response regulator rece 57.5 17 0.00057 20.5 3.9 41 20-63 57-97 (152)
265 3r7a_A Phosphoglycerate mutase 57.5 16 0.00056 22.8 4.2 27 40-66 155-185 (237)
266 2g1p_A DNA adenine methylase; 57.5 32 0.0011 22.6 5.8 48 22-70 174-235 (278)
267 3lxx_A GTPase IMAP family memb 57.4 32 0.0011 21.3 6.1 44 20-63 110-154 (239)
268 4b4t_M 26S protease regulatory 57.3 29 0.00099 24.6 5.8 56 12-67 264-332 (434)
269 1ixk_A Methyltransferase; open 57.2 19 0.00065 23.9 4.6 42 23-65 188-249 (315)
270 3b55_A Succinoglycan biosynthe 57.1 17 0.00058 25.9 4.6 55 18-73 70-124 (451)
271 3c3m_A Response regulator rece 57.0 23 0.00078 19.6 6.2 41 20-63 45-85 (138)
272 3cmu_A Protein RECA, recombina 56.9 44 0.0015 28.5 7.4 55 11-65 448-520 (2050)
273 1jbk_A CLPB protein; beta barr 56.9 4.6 0.00016 23.5 1.4 46 21-66 114-162 (195)
274 1p6q_A CHEY2; chemotaxis, sign 56.0 22 0.00076 19.2 4.8 41 20-63 49-89 (129)
275 4h3d_A 3-dehydroquinate dehydr 55.5 9.7 0.00033 25.1 2.9 55 4-65 93-149 (258)
276 1ujc_A Phosphohistidine phosph 55.4 15 0.0005 21.9 3.5 26 41-66 86-111 (161)
277 4b4t_K 26S protease regulatory 55.1 44 0.0015 23.6 6.4 54 13-66 256-322 (428)
278 2qp9_X Vacuolar protein sortin 54.7 45 0.0016 22.3 6.3 53 14-66 135-198 (355)
279 1jbe_A Chemotaxis protein CHEY 54.7 23 0.0008 19.0 5.5 41 20-63 47-87 (128)
280 1k68_A Phytochrome response re 54.5 24 0.00082 19.1 4.5 26 21-49 54-79 (140)
281 2zay_A Response regulator rece 54.3 26 0.00088 19.4 5.6 40 21-63 51-90 (147)
282 3lua_A Response regulator rece 54.3 25 0.00087 19.3 5.5 41 21-63 49-89 (140)
283 2j48_A Two-component sensor ki 54.2 22 0.00074 18.5 5.4 40 21-63 44-83 (119)
284 1qvr_A CLPB protein; coiled co 54.1 10 0.00035 28.7 3.2 32 17-49 654-686 (854)
285 3t15_A Ribulose bisphosphate c 54.1 34 0.0012 22.3 5.5 13 20-32 97-109 (293)
286 3to5_A CHEY homolog; alpha(5)b 54.0 30 0.001 20.1 5.9 44 18-64 53-97 (134)
287 1h2e_A Phosphatase, YHFR; hydr 53.4 21 0.00073 21.9 4.2 26 41-66 127-153 (207)
288 3mbk_A Ubiquitin-associated an 53.4 23 0.00079 22.6 4.5 27 41-67 168-197 (264)
289 3hjg_A Putative alpha-ribazole 53.4 18 0.0006 22.5 3.8 28 39-66 125-152 (213)
290 2a6p_A Possible phosphoglycera 53.2 17 0.0006 22.4 3.8 27 40-66 128-155 (208)
291 2qgm_A Succinoglycan biosynthe 53.0 25 0.00084 25.0 4.8 56 17-73 68-123 (445)
292 3kht_A Response regulator; PSI 52.9 26 0.00088 19.4 4.2 41 20-63 49-89 (144)
293 3v2d_F 50S ribosomal protein L 52.6 39 0.0013 21.7 5.4 58 10-69 105-165 (210)
294 2qzj_A Two-component response 52.3 28 0.00096 19.2 4.6 38 20-63 46-83 (136)
295 3cf2_A TER ATPase, transitiona 52.3 28 0.00094 26.8 5.3 57 12-68 287-353 (806)
296 3cu5_A Two component transcrip 52.2 29 0.00098 19.3 6.1 39 20-63 47-85 (141)
297 2vo9_A EAD500, L-alanyl-D-glut 52.1 24 0.00081 22.0 4.2 33 32-65 30-62 (179)
298 4a3s_A 6-phosphofructokinase; 51.9 20 0.00067 24.4 4.1 47 12-63 175-222 (319)
299 3ajd_A Putative methyltransfer 51.8 8.8 0.0003 24.8 2.3 42 22-64 156-213 (274)
300 3iog_A Beta-lactamase; hydrola 51.4 22 0.00075 21.6 4.0 37 24-64 33-69 (227)
301 1lv7_A FTSH; alpha/beta domain 51.3 42 0.0014 21.0 5.6 52 15-66 97-161 (257)
302 3d4i_A STS-2 protein; PGM, 2H- 51.0 25 0.00085 22.5 4.3 26 41-66 177-205 (273)
303 3c7t_A Ecdysteroid-phosphate p 50.8 19 0.00066 22.9 3.8 25 42-66 168-195 (263)
304 1svm_A Large T antigen; AAA+ f 50.4 0.13 4.5E-06 36.0 -7.2 32 2-33 280-312 (377)
305 3pxi_A Negative regulator of g 50.3 38 0.0013 25.2 5.7 27 22-49 579-605 (758)
306 4b4t_I 26S protease regulatory 49.9 34 0.0012 24.5 5.2 57 12-68 265-334 (437)
307 3f6c_A Positive transcription 49.8 30 0.001 18.7 6.4 41 20-65 44-84 (134)
308 4b4t_H 26S protease regulatory 49.6 54 0.0018 23.7 6.2 56 11-66 291-359 (467)
309 2j9r_A Thymidine kinase; TK1, 49.3 7.6 0.00026 25.1 1.6 38 22-65 101-138 (214)
310 1qhf_A Protein (phosphoglycera 48.9 22 0.00075 22.3 3.8 28 39-66 154-184 (240)
311 3syl_A Protein CBBX; photosynt 48.9 49 0.0017 21.1 7.2 41 22-64 130-178 (309)
312 1th8_B Anti-sigma F factor ant 48.8 31 0.0011 18.7 5.5 53 14-67 33-87 (116)
313 3cnb_A DNA-binding response re 48.5 32 0.0011 18.7 6.2 41 20-63 52-92 (143)
314 3n1g_B Desert hedgehog protein 48.3 26 0.00089 22.0 3.9 41 22-62 63-108 (170)
315 1ojl_A Transcriptional regulat 48.0 40 0.0014 22.1 5.1 42 22-64 96-146 (304)
316 3m0z_A Putative aldolase; MCSG 47.8 4.5 0.00016 27.0 0.3 34 14-50 178-211 (249)
317 1i3c_A Response regulator RCP1 47.8 35 0.0012 19.1 5.1 26 21-49 60-85 (149)
318 3ilh_A Two component response 47.7 33 0.0011 18.7 6.6 40 21-63 59-100 (146)
319 3t8y_A CHEB, chemotaxis respon 47.2 39 0.0013 19.4 6.1 28 20-50 69-96 (164)
320 3m6y_A 4-hydroxy-2-oxoglutarat 47.1 4.7 0.00016 27.2 0.3 33 14-49 201-233 (275)
321 3gp3_A 2,3-bisphosphoglycerate 47.1 21 0.00071 22.7 3.4 27 40-66 164-193 (257)
322 2chq_A Replication factor C sm 46.7 5.4 0.00018 25.6 0.6 43 21-66 101-143 (319)
323 2jba_A Phosphate regulon trans 46.7 17 0.00058 19.5 2.7 41 21-64 45-86 (127)
324 2a9o_A Response regulator; ess 46.5 31 0.0011 18.1 6.0 27 20-49 43-69 (120)
325 1hqc_A RUVB; extended AAA-ATPa 46.3 52 0.0018 21.1 5.4 29 21-50 89-117 (324)
326 3k7i_B IHH, HHG-2, indian hedg 46.2 6.2 0.00021 25.3 0.8 30 21-50 70-99 (187)
327 1e9r_A Conjugal transfer prote 46.1 14 0.00047 25.4 2.6 44 22-69 279-322 (437)
328 1fzt_A Phosphoglycerate mutase 46.1 18 0.00061 22.3 2.9 26 41-66 138-166 (211)
329 1e58_A Phosphoglycerate mutase 46.0 26 0.00088 22.1 3.8 28 39-66 156-186 (249)
330 2i4r_A V-type ATP synthase sub 45.8 30 0.001 19.7 3.6 26 40-65 38-63 (102)
331 2f6q_A Peroxisomal 3,2-trans-e 45.5 49 0.0017 21.6 5.2 38 25-63 38-77 (280)
332 3kyj_B CHEY6 protein, putative 45.2 32 0.0011 19.0 3.8 15 22-36 60-74 (145)
333 2qvg_A Two component response 45.1 37 0.0013 18.6 6.1 41 21-64 58-98 (143)
334 3rrv_A Enoyl-COA hydratase/iso 45.0 46 0.0016 21.8 5.0 38 25-62 40-80 (276)
335 3lxw_A GTPase IMAP family memb 44.9 23 0.00079 22.4 3.4 58 9-67 89-151 (247)
336 2bjv_A PSP operon transcriptio 44.9 44 0.0015 21.0 4.8 42 22-64 100-150 (265)
337 3r9t_A ECHA1_1; ssgcid, seattl 44.8 54 0.0019 21.2 5.3 38 25-62 21-61 (267)
338 2hhj_A Bisphosphoglycerate mut 44.6 23 0.0008 22.7 3.4 28 39-66 161-191 (267)
339 1tmy_A CHEY protein, TMY; chem 44.6 35 0.0012 18.0 5.7 39 20-63 45-83 (120)
340 3rsi_A Putative enoyl-COA hydr 44.5 54 0.0019 21.2 5.2 38 25-62 21-61 (265)
341 3eie_A Vacuolar protein sortin 44.5 64 0.0022 21.1 6.7 53 14-66 102-165 (322)
342 3vfd_A Spastin; ATPase, microt 44.5 70 0.0024 21.5 6.3 53 14-66 199-263 (389)
343 3cg4_A Response regulator rece 44.4 38 0.0013 18.5 6.3 42 20-64 49-90 (142)
344 1sxj_C Activator 1 40 kDa subu 44.4 35 0.0012 22.4 4.4 42 21-65 109-150 (340)
345 2a7k_A CARB; crotonase, antibi 44.2 60 0.002 20.7 5.6 38 25-62 12-52 (250)
346 1mj3_A Enoyl-COA hydratase, mi 44.2 57 0.0019 21.0 5.3 38 25-62 19-58 (260)
347 2pbp_A Enoyl-COA hydratase sub 44.1 61 0.0021 20.8 5.5 38 25-62 17-57 (258)
348 4dcu_A GTP-binding protein ENG 43.9 21 0.0007 24.9 3.2 55 9-68 89-144 (456)
349 1k66_A Phytochrome response re 43.8 39 0.0013 18.4 4.5 17 21-37 61-77 (149)
350 3h1g_A Chemotaxis protein CHEY 43.8 38 0.0013 18.3 5.6 39 22-63 51-89 (129)
351 1nzy_A Dehalogenase, 4-chlorob 43.4 59 0.002 21.0 5.3 38 25-62 15-55 (269)
352 2rjn_A Response regulator rece 43.4 42 0.0015 18.7 6.3 40 20-64 49-88 (154)
353 3tlf_A Enoyl-COA hydratase/iso 43.3 51 0.0017 21.4 5.0 38 25-62 23-63 (274)
354 1zgz_A Torcad operon transcrip 43.2 37 0.0013 18.0 6.9 38 20-63 44-81 (122)
355 3o8o_B 6-phosphofructokinase s 43.1 1.1E+02 0.0037 23.5 7.2 51 12-63 203-254 (766)
356 2r6a_A DNAB helicase, replicat 42.8 82 0.0028 21.8 6.9 55 4-63 267-321 (454)
357 2ej5_A Enoyl-COA hydratase sub 42.8 62 0.0021 20.7 5.3 39 25-63 15-56 (257)
358 3fdu_A Putative enoyl-COA hydr 42.6 62 0.0021 21.0 5.3 38 25-62 17-57 (266)
359 1uwv_A 23S rRNA (uracil-5-)-me 42.3 61 0.0021 22.4 5.5 40 22-69 356-395 (433)
360 4emb_A 2,3-bisphosphoglycerate 42.3 27 0.00092 22.5 3.4 27 40-66 182-211 (274)
361 3hno_A Pyrophosphate-dependent 42.1 17 0.00057 25.9 2.5 46 12-62 196-246 (419)
362 3mxo_A Serine/threonine-protei 42.0 40 0.0014 20.5 4.1 27 39-65 113-145 (202)
363 3q9s_A DNA-binding response re 42.0 41 0.0014 21.0 4.2 39 19-63 78-116 (249)
364 1zh2_A KDP operon transcriptio 41.9 38 0.0013 17.8 4.4 17 20-36 43-59 (121)
365 1xp2_A EAD500, PLY500, L-alany 41.9 43 0.0015 21.2 4.2 31 33-64 31-61 (179)
366 2jk1_A HUPR, hydrogenase trans 41.7 43 0.0015 18.3 5.6 40 20-64 42-82 (139)
367 3m4x_A NOL1/NOP2/SUN family pr 41.5 24 0.00081 25.2 3.3 16 21-36 174-189 (456)
368 1dz3_A Stage 0 sporulation pro 41.5 42 0.0014 18.1 6.7 41 20-64 46-87 (130)
369 1tue_A Replication protein E1; 41.4 38 0.0013 21.9 4.0 13 21-33 102-114 (212)
370 1uiy_A Enoyl-COA hydratase; ly 41.3 68 0.0023 20.5 5.6 39 25-63 11-52 (253)
371 2q35_A CURF; crotonase, lyase; 41.3 66 0.0023 20.5 5.2 38 25-62 15-55 (243)
372 3kkk_A Phosphoglycerate mutase 41.2 29 0.00099 21.9 3.4 28 39-66 165-195 (258)
373 3l3s_A Enoyl-COA hydratase/iso 41.2 70 0.0024 20.6 5.7 38 25-62 19-58 (263)
374 2wji_A Ferrous iron transport 41.2 50 0.0017 18.9 4.9 25 44-69 98-122 (165)
375 2vgn_A DOM34; translation term 41.1 53 0.0018 22.8 5.0 51 16-67 306-358 (386)
376 3eod_A Protein HNR; response r 41.1 42 0.0014 18.0 4.8 41 20-64 49-89 (130)
377 3f2i_A ALR0221 protein; alpha- 40.9 51 0.0018 19.9 4.4 42 23-67 72-114 (172)
378 3ilx_A First ORF in transposon 40.7 55 0.0019 19.2 5.3 51 9-63 21-71 (143)
379 3i47_A Enoyl COA hydratase/iso 40.6 73 0.0025 20.7 5.4 38 25-62 16-56 (268)
380 1ex9_A Lactonizing lipase; alp 40.5 63 0.0021 20.7 5.0 52 15-66 31-84 (285)
381 3gow_A PAAG, probable enoyl-CO 40.4 62 0.0021 20.7 5.0 38 25-62 12-52 (254)
382 1xhf_A DYE resistance, aerobic 40.3 42 0.0014 17.8 6.6 38 20-63 45-82 (123)
383 1sbo_A Putative anti-sigma fac 40.2 43 0.0015 17.8 8.0 52 15-67 35-88 (110)
384 3qxz_A Enoyl-COA hydratase/iso 39.5 67 0.0023 20.7 5.1 38 25-62 19-59 (265)
385 3t3w_A Enoyl-COA hydratase; ss 39.5 63 0.0022 21.1 5.0 38 25-62 32-72 (279)
386 2qai_A V-type ATP synthase sub 39.2 55 0.0019 18.8 4.2 28 38-65 31-58 (111)
387 2qni_A AGR_C_517P, uncharacter 39.2 45 0.0015 20.9 4.1 27 40-66 138-166 (219)
388 3trr_A Probable enoyl-COA hydr 39.2 66 0.0022 20.7 5.0 38 25-62 19-59 (256)
389 3evz_A Methyltransferase; NYSG 39.1 17 0.00057 22.3 2.0 43 23-65 124-183 (230)
390 3qmj_A Enoyl-COA hydratase, EC 39.1 66 0.0023 20.6 5.0 38 25-62 18-58 (256)
391 3lke_A Enoyl-COA hydratase; ny 38.7 76 0.0026 20.5 5.2 39 25-63 16-57 (263)
392 3qxi_A Enoyl-COA hydratase ECH 38.7 67 0.0023 20.8 5.0 38 25-62 27-67 (265)
393 1gml_A T-complex protein 1 sub 38.6 63 0.0022 19.8 4.6 47 20-67 25-90 (178)
394 1qkk_A DCTD, C4-dicarboxylate 38.6 52 0.0018 18.4 5.2 38 21-63 46-83 (155)
395 3o8b_A HCV NS3 protease/helica 38.6 76 0.0026 23.8 5.7 28 22-50 318-345 (666)
396 3d8h_A Glycolytic phosphoglyce 38.5 39 0.0013 21.7 3.8 28 39-66 174-204 (267)
397 1rii_A 2,3-bisphosphoglycerate 38.4 39 0.0013 21.8 3.8 27 40-66 157-186 (265)
398 3q58_A N-acetylmannosamine-6-p 38.3 77 0.0026 20.2 5.5 49 17-70 96-144 (229)
399 3t8b_A 1,4-dihydroxy-2-naphtho 38.2 73 0.0025 21.6 5.2 38 25-62 69-109 (334)
400 1w25_A Stalked-cell differenti 37.9 93 0.0032 21.1 5.9 27 20-49 43-69 (459)
401 3hrx_A Probable enoyl-COA hydr 37.9 45 0.0016 21.3 4.0 38 25-62 12-52 (254)
402 2qsj_A DNA-binding response re 37.9 53 0.0018 18.2 4.4 38 21-63 49-86 (154)
403 3pe8_A Enoyl-COA hydratase; em 37.7 67 0.0023 20.7 4.8 39 25-63 21-62 (256)
404 2ftc_D Mitochondrial ribosomal 37.6 73 0.0025 19.8 6.0 39 10-50 73-114 (175)
405 4hbz_A Putative phosphohistidi 37.6 35 0.0012 21.0 3.3 26 41-67 99-124 (186)
406 1s8n_A Putative antiterminator 37.5 64 0.0022 19.1 6.1 40 20-64 56-95 (205)
407 3tsm_A IGPS, indole-3-glycerol 37.2 90 0.0031 20.7 7.9 51 15-71 135-185 (272)
408 3eul_A Possible nitrate/nitrit 37.2 55 0.0019 18.2 6.2 39 20-63 59-97 (152)
409 4f47_A Enoyl-COA hydratase ECH 37.1 82 0.0028 20.4 5.2 38 25-62 32-72 (278)
410 3qre_A Enoyl-COA hydratase, EC 37.1 80 0.0027 20.9 5.2 38 25-62 42-82 (298)
411 4e7p_A Response regulator; DNA 37.0 55 0.0019 18.2 6.1 40 19-63 63-102 (150)
412 3h81_A Enoyl-COA hydratase ECH 36.7 70 0.0024 20.9 4.9 38 25-62 37-77 (278)
413 1dci_A Dienoyl-COA isomerase; 36.7 71 0.0024 20.6 4.9 38 25-62 16-56 (275)
414 3oc7_A Enoyl-COA hydratase; se 36.6 75 0.0026 20.5 4.9 38 25-62 23-63 (267)
415 4fzw_C 1,2-epoxyphenylacetyl-C 36.5 88 0.003 20.3 5.6 38 25-62 27-67 (274)
416 1qo0_D AMIR; binding protein, 36.4 51 0.0017 19.4 3.9 38 20-63 50-87 (196)
417 2j5i_A P-hydroxycinnamoyl COA 36.3 87 0.003 20.3 5.3 38 25-62 21-60 (276)
418 3hdg_A Uncharacterized protein 36.3 53 0.0018 17.8 5.6 39 20-63 49-87 (137)
419 1mqo_A Beta-lactamase II; alph 36.3 73 0.0025 19.4 5.1 38 23-64 50-87 (227)
420 1dbw_A Transcriptional regulat 36.2 51 0.0017 17.6 5.6 39 20-63 45-83 (126)
421 2ka5_A Putative anti-sigma fac 36.2 58 0.002 18.3 8.7 52 14-66 42-95 (125)
422 3myb_A Enoyl-COA hydratase; ss 36.2 72 0.0025 20.9 4.9 38 25-62 38-78 (286)
423 1fs5_A Glucosamine-6-phosphate 36.2 11 0.00039 24.3 0.9 34 5-38 202-250 (266)
424 3b2n_A Uncharacterized protein 36.2 53 0.0018 17.8 6.8 39 20-63 47-85 (133)
425 2b4a_A BH3024; flavodoxin-like 36.0 54 0.0019 17.8 5.1 37 21-62 59-95 (138)
426 3sll_A Probable enoyl-COA hydr 36.0 82 0.0028 20.7 5.1 39 25-63 36-77 (290)
427 2qxy_A Response regulator; reg 35.9 55 0.0019 17.8 6.2 38 20-63 46-83 (142)
428 1ne7_A Glucosamine-6-phosphate 35.7 13 0.00044 24.6 1.1 34 5-38 202-250 (289)
429 3g64_A Putative enoyl-COA hydr 35.4 74 0.0025 20.7 4.8 38 25-62 29-69 (279)
430 3swx_A Probable enoyl-COA hydr 35.1 90 0.0031 20.1 5.3 38 25-62 21-61 (265)
431 1wxx_A TT1595, hypothetical pr 35.1 42 0.0014 22.7 3.6 42 22-64 279-327 (382)
432 3r9q_A Enoyl-COA hydratase/iso 34.7 85 0.0029 20.3 5.0 38 25-62 23-63 (262)
433 2aiz_P Outer membrane protein 34.7 68 0.0023 18.6 6.0 46 19-64 25-70 (134)
434 1mvo_A PHOP response regulator 34.7 56 0.0019 17.6 6.6 39 20-63 45-83 (136)
435 2rdm_A Response regulator rece 34.6 55 0.0019 17.5 6.3 37 22-63 50-87 (132)
436 3f3k_A Uncharacterized protein 34.6 61 0.0021 20.6 4.2 12 55-66 168-179 (265)
437 4fzw_A 2,3-dehydroadipyl-COA h 34.6 87 0.003 20.1 5.0 38 25-62 17-56 (258)
438 3igs_A N-acetylmannosamine-6-p 34.5 90 0.0031 19.9 5.5 50 16-70 95-144 (232)
439 4di1_A Enoyl-COA hydratase ECH 34.5 97 0.0033 20.3 5.6 38 25-62 36-74 (277)
440 3hv2_A Response regulator/HD d 34.4 62 0.0021 18.0 6.8 39 20-63 56-94 (153)
441 3pea_A Enoyl-COA hydratase/iso 34.4 92 0.0032 20.0 5.6 39 25-63 18-58 (261)
442 2r25_B Osmosensing histidine p 34.4 59 0.002 17.7 6.5 26 21-49 51-76 (133)
443 3td3_A Outer membrane protein 34.3 64 0.0022 18.1 4.6 41 24-64 14-54 (123)
444 3kqf_A Enoyl-COA hydratase/iso 34.3 82 0.0028 20.3 4.9 38 25-62 21-61 (265)
445 1pjh_A Enoyl-COA isomerase; EC 34.3 86 0.0029 20.4 5.0 38 25-62 21-61 (280)
446 4eml_A Naphthoate synthase; 1, 34.2 86 0.003 20.4 5.0 38 25-62 22-62 (275)
447 1sqg_A SUN protein, FMU protei 34.1 27 0.00094 24.1 2.6 15 22-36 315-329 (429)
448 1wz8_A Enoyl-COA hydratase; ly 34.1 70 0.0024 20.6 4.5 38 25-62 23-62 (264)
449 1a6d_A Thermosome (alpha subun 34.1 44 0.0015 24.3 3.7 46 20-66 231-295 (545)
450 1yfk_A Phosphoglycerate mutase 34.0 51 0.0017 21.0 3.8 27 40-66 160-189 (262)
451 2fhx_A SPM-1; metallo-beta-lac 33.9 65 0.0022 19.8 4.2 37 24-64 41-77 (246)
452 3lao_A Enoyl-COA hydratase/iso 33.6 91 0.0031 20.0 5.0 39 25-63 24-65 (258)
453 3a10_A Response regulator; pho 33.2 55 0.0019 17.0 6.3 39 20-63 43-81 (116)
454 2fbm_A Y chromosome chromodoma 33.1 1E+02 0.0036 20.2 5.9 38 25-62 35-75 (291)
455 3opy_B 6-phosphofructo-1-kinas 33.0 1.3E+02 0.0046 23.7 6.4 50 12-62 381-431 (941)
456 3t89_A 1,4-dihydroxy-2-naphtho 32.9 92 0.0031 20.5 5.0 38 25-62 40-80 (289)
457 3cwo_X Beta/alpha-barrel prote 32.8 81 0.0028 18.8 5.6 28 20-50 23-50 (237)
458 3o8l_A 6-phosphofructokinase, 32.5 94 0.0032 23.9 5.4 49 12-62 579-628 (762)
459 1hzd_A AUH, AU-binding protein 32.5 62 0.0021 21.0 4.0 38 25-62 24-64 (272)
460 2kpt_A Putative secreted prote 32.4 82 0.0028 18.8 4.8 35 27-62 17-51 (148)
461 2vx2_A Enoyl-COA hydratase dom 32.2 63 0.0022 21.2 4.1 38 25-62 45-85 (287)
462 3p5m_A Enoyl-COA hydratase/iso 32.2 69 0.0024 20.5 4.2 38 25-62 18-58 (255)
463 4dad_A Putative pilus assembly 32.1 66 0.0023 17.6 5.7 38 21-63 66-103 (146)
464 2d00_A V-type ATP synthase sub 31.8 50 0.0017 18.8 3.1 25 41-65 32-56 (109)
465 1a7t_A Metallo-beta-lactamase; 31.8 78 0.0027 19.4 4.3 37 24-64 47-83 (232)
466 4hl2_A Beta-lactamase NDM-1; s 31.8 91 0.0031 19.1 4.8 37 24-64 58-94 (243)
467 2qv0_A Protein MRKE; structura 31.7 66 0.0023 17.5 5.8 39 21-64 54-92 (143)
468 1xwi_A SKD1 protein; VPS4B, AA 31.7 1.1E+02 0.0038 20.1 7.5 19 14-32 97-115 (322)
469 1sfl_A 3-dehydroquinate dehydr 31.6 1E+02 0.0035 19.7 6.0 57 4-65 77-135 (238)
470 1srr_A SPO0F, sporulation resp 31.5 62 0.0021 17.1 7.2 39 20-63 45-83 (124)
471 1ef8_A Methylmalonyl COA decar 31.3 71 0.0024 20.5 4.1 38 25-62 16-55 (261)
472 3obw_A Protein pelota homolog; 31.3 56 0.0019 22.6 3.8 42 24-67 304-345 (364)
473 3o8o_A 6-phosphofructokinase s 31.3 1.3E+02 0.0045 23.2 6.0 50 12-62 204-254 (787)
474 1we3_A CPN60(groel); chaperoni 31.1 27 0.00091 25.5 2.2 41 20-66 213-253 (543)
475 2gwr_A DNA-binding response re 31.1 91 0.0031 18.9 6.1 17 21-37 48-64 (238)
476 2oqr_A Sensory transduction pr 31.1 87 0.003 18.7 6.4 40 20-65 46-85 (230)
477 3ju1_A Enoyl-COA hydratase/iso 31.1 1.1E+02 0.0038 21.3 5.3 38 25-62 54-93 (407)
478 3njd_A Enoyl-COA hydratase; ss 31.0 79 0.0027 21.2 4.4 38 25-62 47-87 (333)
479 2igt_A SAM dependent methyltra 30.8 70 0.0024 21.4 4.2 40 22-61 225-272 (332)
480 3cfy_A Putative LUXO repressor 30.8 70 0.0024 17.5 6.2 39 20-63 46-84 (137)
481 3l6n_A Metallo-beta-lactamase; 30.8 59 0.002 19.6 3.5 38 23-64 40-77 (219)
482 2fao_A Probable ATP-dependent 30.7 59 0.002 22.2 3.8 36 21-56 130-166 (309)
483 3rqi_A Response regulator prot 30.7 62 0.0021 18.9 3.6 40 19-63 48-87 (184)
484 2r5f_A Transcriptional regulat 30.7 6.8 0.00023 25.7 -0.9 29 5-33 230-259 (264)
485 3moy_A Probable enoyl-COA hydr 30.6 1.1E+02 0.0037 19.7 5.0 38 25-62 22-61 (263)
486 1a6d_B Thermosome (beta subuni 30.5 67 0.0023 23.3 4.2 46 20-66 232-296 (543)
487 3g40_A Na-K-CL cotransporter; 30.2 1.3E+02 0.0045 20.4 5.8 59 3-64 90-148 (294)
488 1szo_A 6-oxocamphor hydrolase; 30.1 93 0.0032 20.0 4.6 37 26-62 29-68 (257)
489 3nwy_A Uridylate kinase; allos 30.1 94 0.0032 20.6 4.6 29 33-62 67-95 (281)
490 2as0_A Hypothetical protein PH 30.0 46 0.0016 22.6 3.2 42 22-64 289-337 (396)
491 2gnp_A Transcriptional regulat 29.9 7.4 0.00025 25.5 -0.9 29 5-33 227-256 (266)
492 1o7j_A L-asparaginase; atomic 29.9 64 0.0022 21.9 3.8 40 30-69 60-99 (327)
493 1a04_A Nitrate/nitrite respons 29.8 90 0.0031 18.5 5.9 38 20-62 49-86 (215)
494 2uzf_A Naphthoate synthase; ly 29.8 1.1E+02 0.0039 19.7 5.5 38 25-62 25-65 (273)
495 1b9m_A Protein (mode); DNA-bin 29.7 2.7 9.3E-05 27.0 -3.0 24 2-25 71-94 (265)
496 2www_A Methylmalonic aciduria 29.5 29 0.001 23.4 2.1 38 22-68 252-289 (349)
497 3nco_A Endoglucanase fncel5A; 29.4 87 0.003 20.3 4.4 34 14-47 125-161 (320)
498 1sg4_A 3,2-trans-enoyl-COA iso 29.4 1.1E+02 0.0038 19.6 4.8 39 25-63 17-57 (260)
499 2wlt_A L-asparaginase; hydrola 29.4 65 0.0022 21.9 3.8 39 30-68 60-98 (332)
500 1tlj_A Hypothetical UPF0130 pr 29.4 34 0.0012 22.1 2.3 11 55-65 67-77 (213)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=8.3e-30 Score=169.58 Aligned_cols=75 Identities=33% Similarity=0.508 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+.++.++.|.|||++|||++.+..+|+++.
T Consensus 143 ~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~ 217 (235)
T 3tif_A 143 PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIY 217 (235)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876558999999999997766888754
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=6e-29 Score=175.16 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=71.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|++++++.|.|||++||+++++.. ||+++.
T Consensus 160 ~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 4789999999999999999999999999999999999999999999999977779999999999999976 888753
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=9.4e-29 Score=163.40 Aligned_cols=74 Identities=30% Similarity=0.493 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++ |.|||++||+++++..+|+++.
T Consensus 138 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~v~~ 211 (224)
T 2pcj_A 138 PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELAELTHRTLE 211 (224)
T ss_dssp GGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHTTSSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998766 8999999999998855888753
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=3.6e-29 Score=170.28 Aligned_cols=75 Identities=37% Similarity=0.519 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|+++||||||+|||+.++..+++.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 141 ~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~ 216 (275)
T 3gfo_A 141 THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFV 216 (275)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999863348999999999999876 888753
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=1.1e-28 Score=166.44 Aligned_cols=74 Identities=38% Similarity=0.592 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+.++.++ |.|||++||+++++.. +|+++.
T Consensus 151 ~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~ 225 (262)
T 1b0u_A 151 PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIF 225 (262)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5789999999999999999999999999999999999999999999998665 8999999999999875 888753
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=1.1e-28 Score=167.03 Aligned_cols=75 Identities=31% Similarity=0.368 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 2 EISSRGGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
+.+||||||||++|||||+. +|+++||||||+|||+..+..+++.++++.++.|.|||++|||++++.. +|++
T Consensus 139 ~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 139 YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEE
T ss_pred cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEE
Confidence 56899999999999999999 9999999999999999999999999999877667899999999999875 8887
Q ss_pred ec
Q psy5634 75 ID 76 (79)
Q Consensus 75 ~~ 76 (79)
+.
T Consensus 219 ~v 220 (266)
T 4g1u_C 219 ML 220 (266)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 7
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=7.8e-29 Score=165.65 Aligned_cols=75 Identities=31% Similarity=0.424 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 124 ~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~ 199 (240)
T 2onk_A 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV 199 (240)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999865558999999999998865 788653
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=2e-28 Score=165.69 Aligned_cols=74 Identities=31% Similarity=0.519 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++ |.|||++||+++++.. +|+++.
T Consensus 157 ~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~ 231 (263)
T 2olj_A 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLF 231 (263)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998665 8999999999999875 788753
No 9
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=2.9e-28 Score=162.42 Aligned_cols=74 Identities=27% Similarity=0.487 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ .|.|||++||+++++.. +|+++.
T Consensus 137 ~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~ 211 (240)
T 1ji0_A 137 GGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYV 211 (240)
T ss_dssp SSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence 678999999999999999999999999999999999999999999999865 58999999999988765 888753
No 10
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=2.1e-28 Score=172.00 Aligned_cols=76 Identities=36% Similarity=0.524 Sum_probs=70.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.+.++.++.|.|+|+||||++++.. +|+++.
T Consensus 135 ~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~v 211 (359)
T 3fvq_A 135 YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAV 211 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEE
Confidence 3678999999999999999999999999999999999999999998888877779999999999999976 898753
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=1.1e-28 Score=165.83 Aligned_cols=74 Identities=28% Similarity=0.514 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+.++.++ |.|||++||+++++.. +|+++.
T Consensus 151 ~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~ 225 (257)
T 1g6h_A 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYV 225 (257)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEE
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998655 8999999999998865 888753
No 12
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=3e-28 Score=163.76 Aligned_cols=75 Identities=28% Similarity=0.391 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus 126 ~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~ 201 (253)
T 2nq2_C 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLL 201 (253)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999866558999999999999865 888753
No 13
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=2.5e-28 Score=165.44 Aligned_cols=75 Identities=29% Similarity=0.398 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++.|.|||++||+++++..+|+++.
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~ 228 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILF 228 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999998865558999999999999877888754
No 14
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.95 E-value=3.3e-28 Score=172.11 Aligned_cols=76 Identities=29% Similarity=0.447 Sum_probs=70.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||++||+..+.++++.|+++.++.|.|+|+||||++++.. +|+++.
T Consensus 130 ~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~v 206 (381)
T 3rlf_A 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV 206 (381)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEE
T ss_pred ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999977668999999999999976 888753
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=7.6e-28 Score=162.19 Aligned_cols=74 Identities=30% Similarity=0.415 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 144 ~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~ 218 (256)
T 1vpl_A 144 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIAL 218 (256)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEE
Confidence 568999999999999999999999999999999999999999999999865 48999999999999986 888753
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=6.7e-28 Score=168.69 Aligned_cols=76 Identities=34% Similarity=0.507 Sum_probs=70.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus 124 ~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~v 200 (348)
T 3d31_A 124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV 200 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999877668999999999999875 788753
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=5.3e-28 Score=169.64 Aligned_cols=76 Identities=33% Similarity=0.493 Sum_probs=69.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus 142 ~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 218 (355)
T 1z47_A 142 FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLV 218 (355)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999876668999999999999876 888753
No 18
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=5.5e-28 Score=163.20 Aligned_cols=74 Identities=34% Similarity=0.536 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++ |.|||++||+++++.. +|+++.
T Consensus 136 ~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~ 210 (266)
T 2yz2_A 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVV 210 (266)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998665 8999999999999876 888653
No 19
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=7.9e-28 Score=168.94 Aligned_cols=76 Identities=30% Similarity=0.428 Sum_probs=69.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus 130 ~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v 206 (359)
T 2yyz_A 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV 206 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999876668999999999999875 888753
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=8.9e-28 Score=169.17 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=69.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus 136 ~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence 3678999999999999999999999999999999999999999999999876668999999999999875 888753
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=5.4e-28 Score=169.27 Aligned_cols=75 Identities=31% Similarity=0.395 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus 138 ~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v 213 (353)
T 1oxx_K 138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV 213 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876668999999999999876 888753
No 22
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=1.4e-27 Score=159.92 Aligned_cols=73 Identities=32% Similarity=0.509 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++ ++ |.|||++||+++.+..+|+++.
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~-g~tviivtH~~~~~~~~d~v~~ 215 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CK-GRTVIIIAHRLSTVKNADRIIV 215 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HT-TSEEEEECSSGGGGTTSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cC-CCEEEEEeCCHHHHHhCCEEEE
Confidence 4689999999999999999999999999999999999999999999998 44 8999999999998877888754
No 23
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=7.8e-28 Score=169.11 Aligned_cols=75 Identities=37% Similarity=0.516 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus 131 ~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 206 (362)
T 2it1_A 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAV 206 (362)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999876668999999999999875 888753
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.94 E-value=1.2e-27 Score=168.71 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=70.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus 138 ~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 214 (372)
T 1v43_A 138 YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 214 (372)
T ss_dssp CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4689999999999999999999999999999999999999999999999876668999999999999875 888753
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=9.9e-28 Score=163.28 Aligned_cols=74 Identities=35% Similarity=0.507 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTV--IITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tv--i~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.|.++.++ |.|| |++||+++++.. +|+++.
T Consensus 159 ~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~ 235 (279)
T 2ihy_A 159 IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILL 235 (279)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998766 8899 999999998865 788653
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=1.2e-27 Score=160.21 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCC-CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hcceec
Q psy5634 2 EIS-SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVID 76 (79)
Q Consensus 2 ~~~-lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~~ 76 (79)
+.+ ||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 140 ~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~ 216 (250)
T 2d2e_A 140 LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHV 216 (250)
T ss_dssp TTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEE
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEE
Confidence 456 999999999999999999999999999999999999999999998854 58999999999998876 488753
No 27
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.94 E-value=2.7e-27 Score=159.50 Aligned_cols=73 Identities=26% Similarity=0.480 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+.++. + |.|||++||+++.+..+|+++.
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~~~d~i~~ 225 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTISSAESIIL 225 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGSTTCSEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEEE
Confidence 46899999999999999999999999999999999999999999999884 4 7899999999998877888753
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=3.2e-27 Score=158.64 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcc
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPE-------LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHT 73 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~-------~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~ 73 (79)
+.+||||||||++|||||+.+|+ ++||||||+|||+..+..+.+.+.++.++ |.|||++||+++++.. +|+
T Consensus 124 ~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~ 202 (249)
T 2qi9_C 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHR 202 (249)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCE
Confidence 56899999999999999999999 99999999999999999999999998655 8999999999999864 788
Q ss_pred eec
Q psy5634 74 VID 76 (79)
Q Consensus 74 i~~ 76 (79)
++.
T Consensus 203 v~~ 205 (249)
T 2qi9_C 203 AWL 205 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.94 E-value=6.1e-27 Score=161.48 Aligned_cols=73 Identities=25% Similarity=0.485 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||++||+.+...+++.|.++.+ +.|+|+|||+++.+..+|+++.
T Consensus 188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~aD~i~v 260 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVNADQILV 260 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHTCSEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHcCCEEEE
Confidence 468999999999999999999999999999999999999999999998753 6899999999999988999764
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.94 E-value=2.6e-27 Score=160.06 Aligned_cols=72 Identities=26% Similarity=0.373 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hcceec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVID 76 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~~ 76 (79)
+||||||||++|||||+.+|+++||||||+|||+.+++.+++.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~~ 237 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHV 237 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEEE
Confidence 5999999999999999999999999999999999999999999998754 48999999999998875 688653
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=1.5e-27 Score=159.14 Aligned_cols=73 Identities=23% Similarity=0.435 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+.++. + |.|||++||+++.+..+|+++.
T Consensus 137 ~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~v~~ 209 (243)
T 1mv5_A 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIVDADKIYF 209 (243)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHHHCSEEEE
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHHhCCEEEE
Confidence 45899999999999999999999999999999999999999999999885 4 8999999999998877888753
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=9.5e-28 Score=158.34 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++ |.|||++||+++++.. +|+++
T Consensus 131 ~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 131 LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGG
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 5689999999999999999999999999999999999999999999998654 7899999999998876 56654
No 33
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=9.8e-27 Score=169.81 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=70.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|.+++++.|.|||+||||++++.. ||+++.
T Consensus 383 ~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~v 458 (538)
T 3ozx_A 383 VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV 458 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999999999999999999999999999999999999977678999999999999986 898764
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.94 E-value=8.2e-27 Score=154.51 Aligned_cols=73 Identities=32% Similarity=0.487 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL-VQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l-~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+ .++. + |.|||++||+++++..+|+++.
T Consensus 128 ~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~ 201 (229)
T 2pze_A 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLKKADKILI 201 (229)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHHHCSEEEE
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-C-CCEEEEEcCChHHHHhCCEEEE
Confidence 4689999999999999999999999999999999999999999864 4442 3 7899999999998877888653
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.93 E-value=7.4e-27 Score=155.49 Aligned_cols=73 Identities=29% Similarity=0.503 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV---QITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~---~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+. ++ + .|.|||++||+++.+..+|+++.
T Consensus 125 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~~~d~v~~ 200 (237)
T 2cbz_A 125 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYLPQVDVIIV 200 (237)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTGGGSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999885 33 2 37999999999988777888753
No 36
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.1e-26 Score=170.08 Aligned_cols=75 Identities=25% Similarity=0.285 Sum_probs=69.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|.++.++.|.|||+||||++++.. +|+++.
T Consensus 465 ~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrviv 540 (608)
T 3j16_B 465 VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIV 540 (608)
T ss_dssp SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 679999999999999999999999999999999999999999999999866568999999999999986 888764
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=2.6e-26 Score=155.29 Aligned_cols=71 Identities=25% Similarity=0.253 Sum_probs=64.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hc-ceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AH-TVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d-~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+.++. . |+|++||+++++.. +| +++.
T Consensus 126 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~ 198 (263)
T 2pjz_A 126 LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYF 198 (263)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEE
Confidence 56899999999999999999999999999999999999999999998763 2 99999999998865 88 7653
No 38
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.93 E-value=8.6e-26 Score=142.06 Aligned_cols=74 Identities=30% Similarity=0.321 Sum_probs=64.9
Q ss_pred CCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFA------VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~la------ral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+.+||||||||++|| |+++.+|++++|||||+|||+..+..+.+.+.++.++ |.|||++||+.+....+|+++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~d~ii 133 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAADHVI 133 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGCSEEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHHHHHhCCEEE
Confidence 568999999999876 8999999999999999999999999999999987554 789999999996544578765
Q ss_pred c
Q psy5634 76 D 76 (79)
Q Consensus 76 ~ 76 (79)
.
T Consensus 134 ~ 134 (148)
T 1f2t_B 134 R 134 (148)
T ss_dssp E
T ss_pred E
Confidence 3
No 39
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.93 E-value=6.6e-26 Score=165.21 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=69.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|.+++++.|.|||++|||++++.. ||+++.
T Consensus 399 ~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~v 474 (538)
T 1yqt_A 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMV 474 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999865558999999999999976 888753
No 40
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=1.4e-25 Score=163.45 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.+ .|.|||+|||+++++.. +|+++.
T Consensus 156 ~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~v 230 (538)
T 1yqt_A 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHV 230 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999876 48999999999999876 788764
No 41
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=1.5e-25 Score=165.36 Aligned_cols=75 Identities=23% Similarity=0.381 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|.++.++.|.|||++|||++++.. +|+++.
T Consensus 469 ~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~v 544 (607)
T 3bk7_A 469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 544 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999999876668999999999999976 888753
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.92 E-value=7.6e-26 Score=154.83 Aligned_cols=73 Identities=32% Similarity=0.483 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL-VQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l-~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+ .++ .+ |.|||++||+++++..+|+++.
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~-~~-~~tviivtHd~~~~~~~d~i~~ 230 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MA-NKTRILVTSKMEHLKKADKILI 230 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC-TT-TSEEEEECCCHHHHHHSSEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh-hC-CCEEEEEecCHHHHHcCCEEEE
Confidence 3689999999999999999999999999999999999999999864 344 33 7899999999998877888754
No 43
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=2.4e-25 Score=164.38 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++ |.|||+||||++++.. +|+++.
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~v 300 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHV 300 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEE
Confidence 5689999999999999999999999999999999999999999999998764 8999999999999876 788753
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.92 E-value=3.5e-25 Score=162.22 Aligned_cols=73 Identities=27% Similarity=0.470 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||++||+.+++.+.+.+.++.+ |+|+|++||+++.+..+|+++.
T Consensus 481 ~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~ 553 (595)
T 2yl4_A 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTIKNANMVAV 553 (595)
T ss_dssp SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHHHHSSEEEE
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHcCCEEEE
Confidence 478999999999999999999999999999999999999999999998854 7899999999999888998763
No 45
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=3.3e-25 Score=162.45 Aligned_cols=73 Identities=36% Similarity=0.472 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+.++. .|+|+|++||+++.+..+|+++.
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~v 549 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTALLADKILV 549 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHTTSSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHHhCCEEEE
Confidence 56899999999999999999999999999999999999999999998873 38999999999999988999764
No 46
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.92 E-value=3e-25 Score=162.21 Aligned_cols=73 Identities=36% Similarity=0.510 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+.++. + |+|+|++||+++.+..+|+++.
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~d~i~~ 550 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIEQADEILV 550 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHhCCEEEE
Confidence 46899999999999999999999999999999999999999999999874 3 8999999999999888998764
No 47
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=1.7e-25 Score=165.46 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~--~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||||||+|||||+.+|+ +|||||||+|||+..+..+++.|+++.+ .|.|||+||||++++..+|+++.
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~d~ii~ 275 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTMLAADYLID 275 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhhCCEEEE
Confidence 46899999999999999999998 9999999999999999999999999865 48999999999998878898763
No 48
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.92 E-value=2.7e-25 Score=162.48 Aligned_cols=73 Identities=30% Similarity=0.490 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+.++. + |+|+|++||+++.+..+|+++.
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~d~i~~ 550 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIEQADEIVV 550 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTTTCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHHhCCEEEE
Confidence 46899999999999999999999999999999999999999999999885 3 8999999999998888898764
No 49
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=3.9e-25 Score=163.55 Aligned_cols=74 Identities=28% Similarity=0.467 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||||||+|||||+.+| ++|||||||+|||+..+..+++.+.++.++ |.|||+||||++++..+|+++.
T Consensus 541 ~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~i~~ 617 (670)
T 3ux8_A 541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVIKTADYIID 617 (670)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEE
T ss_pred chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHhCCEEEE
Confidence 5689999999999999999887 599999999999999999999999998654 8999999999999877999764
No 50
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.92 E-value=3.3e-25 Score=162.04 Aligned_cols=73 Identities=27% Similarity=0.463 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||++||+.+...+.+.+.++. + ++|+|++||+++.+..+|+++.
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~~d~i~~ 547 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-K-DRTTLIVAHRLSTITHADKIVV 547 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGTTTCSEEEE
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHcCCEEEE
Confidence 35899999999999999999999999999999999999999999998874 3 6899999999999888998764
No 51
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=4e-25 Score=162.19 Aligned_cols=72 Identities=29% Similarity=0.439 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
.+||||||||++|||||+++|+++||||||++||+.+...+.+.+.++. + |+|+|++||+++.+..+|+++.
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~~d~i~~ 561 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-E-GKTSIIIAHRLNTIKNADLIIV 561 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-T-TSEEEEESCCTTHHHHCSEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHcCCEEEE
Confidence 5899999999999999999999999999999999999999999999874 3 8999999999999988998764
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.7e-25 Score=161.24 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
.+.+||||||||++|||||+.+|+++||||||++||+..+..+++.++++.+ .|.|||++||+++++.. +|+++.
T Consensus 218 ~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~v 293 (608)
T 3j16_B 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCI 293 (608)
T ss_dssp CTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHHHHHHHCSEEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3679999999999999999999999999999999999999999999999865 48899999999999986 788754
No 53
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.91 E-value=7.8e-25 Score=153.08 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFAVALM------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+.+||||||||++||+||+ .+|+++||||||+|||+..+..+++.+.++.+ .|.|||+|||+++++..+|+++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHHHTTCSCEE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEE
Confidence 4689999999999999999 79999999999999999999999999999864 4899999999999977788875
Q ss_pred c
Q psy5634 76 D 76 (79)
Q Consensus 76 ~ 76 (79)
.
T Consensus 356 ~ 356 (365)
T 3qf7_A 356 R 356 (365)
T ss_dssp E
T ss_pred E
Confidence 3
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.91 E-value=8.2e-25 Score=159.66 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+.+|||||||||+|||||+.+|+++||||||++||+..+..+++.|+++. + |.|||+|||+++++.. +|+++
T Consensus 136 ~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~ 208 (538)
T 3ozx_A 136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIH 208 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEE
Confidence 56899999999999999999999999999999999999999999999984 4 8999999999999876 77765
No 55
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.2e-25 Score=157.84 Aligned_cols=71 Identities=25% Similarity=0.377 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++. .+.|+|++||+++.+..+|+++.
T Consensus 155 ~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~~~aDri~v 225 (390)
T 3gd7_A 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAMLECDQFLV 225 (390)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGGTTCSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHHHhCCEEEE
Confidence 499999999999999999999999999999999999999999998753 37899999999887767898754
No 56
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=1e-23 Score=161.32 Aligned_cols=74 Identities=30% Similarity=0.465 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||||||+|||+|+++| +++||||||+|||+...+.+++.|.++.+ .|.|||+||||++++..+|+++.
T Consensus 803 ~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~i~~ADrIiv 879 (916)
T 3pih_A 803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNLDVIKNADHIID 879 (916)
T ss_dssp STTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTTCSEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEE
Confidence 5689999999999999999875 79999999999999999999999999865 48999999999999988999874
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.89 E-value=2e-23 Score=163.24 Aligned_cols=73 Identities=26% Similarity=0.459 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||+|||+.+.+.+.+.+.+. . .|+|+|++||+++++..+|+++.
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~-~~~tvi~isH~l~~i~~~dri~v 1241 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-R-EGRTCIVIAHRLSTIQNADLIVV 1241 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-S-SSSCEEEECSCTTGGGSCSEEEE
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-C-CCCEEEEEecCHHHHHcCCEEEE
Confidence 4689999999999999999999999999999999999999999999875 3 48999999999999988999764
No 58
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=2.6e-23 Score=159.04 Aligned_cols=74 Identities=28% Similarity=0.478 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~--~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||+|+.+|+ ++||||||+|||+.....+++.|+++.+ .|.|||+||||++++..+|+++.
T Consensus 462 ~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd~~~~~~aD~ii~ 537 (916)
T 3pih_A 462 ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHDEEVIRNADHIID 537 (916)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCCHHHHHTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEE
Confidence 46899999999999999999887 9999999999999999999999999854 58999999999999888998864
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.88 E-value=6.5e-23 Score=160.31 Aligned_cols=73 Identities=27% Similarity=0.477 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++||||||++||+.+...+.+.+.+.. + |+|+|++||+++.+..+|+++.
T Consensus 524 g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~i~~~d~i~v 596 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-E-GRTTIVIAHRLSTVRNADVIAG 596 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-T-TSEEEEECSCHHHHTTCSEEEE
T ss_pred CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHcCCEEEE
Confidence 46899999999999999999999999999999999999999999888763 3 8999999999999988999864
No 60
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=1.3e-22 Score=141.73 Aligned_cols=70 Identities=24% Similarity=0.412 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 5 SRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
||||||||++||++|+.+| ++|||||||+|||+..+..+.+.|.++. + |.|||+|||+++++..+|+++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHHTTCSEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHhhcCeEEE
Confidence 7999999999999999999 9999999999999999999999999985 3 7899999999988877888753
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=7.7e-23 Score=157.28 Aligned_cols=71 Identities=24% Similarity=0.295 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+ .|.|+|++||+++++.. +|+++.
T Consensus 546 ~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~ 617 (986)
T 2iw3_A 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIIN 617 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEE
Confidence 468999999999999999999999999999999999999999999886 37899999999999976 787653
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=6.9e-23 Score=155.71 Aligned_cols=74 Identities=27% Similarity=0.468 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHD---PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~---p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||++|+.+ |+++||||||+|||+..+..+++.|.++.++ |.|||++|||++++..+|+++.
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~i~~aDrii~ 804 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHKMQVVAASDWVLD 804 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHhCCEEEE
Confidence 568999999999999999996 7999999999999999999999999998654 8999999999999977898764
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.88 E-value=1e-22 Score=156.29 Aligned_cols=74 Identities=28% Similarity=0.459 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||++|+.+| +++||||||+|||+..+..+++.|.++.+ .|.|||++|||++++..+|+++.
T Consensus 843 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i~~aDrIiv 919 (972)
T 2r6f_A 843 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVIKTADYIID 919 (972)
T ss_dssp GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTTCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHhCCEEEE
Confidence 5689999999999999999865 99999999999999999999999999865 48999999999999877898764
No 64
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.87 E-value=4e-23 Score=161.82 Aligned_cols=73 Identities=26% Similarity=0.434 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++|||||+++|+++|||||||+||+.+.+.+.+.|.+.. .|+|+|+|+|.+..+..+|+|+.
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~aD~I~V 1287 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMNADCIAV 1287 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTTCSEEEE
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHhCCEEEE
Confidence 46899999999999999999999999999999999999999999988764 37999999999999999999864
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=1.8e-22 Score=155.19 Aligned_cols=74 Identities=27% Similarity=0.413 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||||||+||++|+.+| +++||||||+|||+..+..+++.|.++.+ .|.|||++|||++++..+|+++.
T Consensus 861 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i~~aDrIiv 937 (993)
T 2ygr_A 861 APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVIEHNLDVIKTSDWIID 937 (993)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHhCCEEEE
Confidence 5689999999999999999865 99999999999999999999999999865 48999999999999877898764
No 66
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.87 E-value=7.8e-23 Score=160.17 Aligned_cols=73 Identities=32% Similarity=0.500 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+||||||||++||||+.++|+++||||||++||+.+...+.+.+.++.+ |+|+|++||++..+..+|+|+.
T Consensus 552 G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i~~aD~Iiv 624 (1321)
T 4f4c_A 552 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTIRNADLIIS 624 (1321)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTTTTCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHHHhCCEEEE
Confidence 568999999999999999999999999999999999999999999988753 7999999999999999999864
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.87 E-value=8.8e-23 Score=156.98 Aligned_cols=71 Identities=28% Similarity=0.343 Sum_probs=63.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
+++||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|.++ |.|||++|||++++.. +|+++.
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~e~v~~l~DrViv 970 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSAEFTKNLTEEVWA 970 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCHHHHTTTCCEEEC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEE
Confidence 5689999999999999999999999999999999999999888877643 5699999999999875 788764
No 68
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.87 E-value=4.3e-22 Score=127.88 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+..||||||||++||++++. +|+++||||||+|||+.+...+.+.+.++.+ +.++|++||+......+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHHHhCCEEE
Confidence 45799999999999999974 4699999999999999999999999988753 468999999988777788875
No 69
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.87 E-value=1.9e-22 Score=145.72 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=67.1
Q ss_pred CCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISS-RGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~l-S~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+..| ||||+||++||++|+.+| +++||||||+|||+.....+.+.|.++.+ |.|||+|||+++.+..+|+++.
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhCCEEEE
Confidence 3567 999999999999999999 99999999999999999999999999864 7899999999998888888753
No 70
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.87 E-value=3.6e-22 Score=137.91 Aligned_cols=73 Identities=30% Similarity=0.346 Sum_probs=64.0
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 2 EISSRGGQQR------RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 2 ~~~lS~G~kq------rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+.+||||||| |+++|++++.+|+++||||||+|||+..+..+.+.+.++.++ |.|||++||+.+....+|+++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGCSEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhCCEEE
Confidence 4679999999 677888889999999999999999999999999999988654 789999999977655688765
No 71
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.86 E-value=3.4e-22 Score=153.43 Aligned_cols=74 Identities=24% Similarity=0.369 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||+||++||++|..+| ++|||||||+|||+...+.+++.|+++. +.|.|||+|+|+++++..+|+++.
T Consensus 502 ~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl~~i~~ADrIi~ 577 (972)
T 2r6f_A 502 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHDEDTMLAADYLID 577 (972)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCCHHHHHSCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhCCEEEE
Confidence 4689999999999999999985 9999999999999999999999999985 568999999999999888999875
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.86 E-value=5.9e-22 Score=152.42 Aligned_cols=74 Identities=23% Similarity=0.426 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||+||++||++|..+ |++|||||||+|||+...+.+++.|+++. +.|.|||+|||+++++..+|+++.
T Consensus 519 ~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl~~i~~ADrIi~ 594 (993)
T 2ygr_A 519 AATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLR-DLGNTLIVVEHDEDTIEHADWIVD 594 (993)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCHHHHHTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHH-HcCCEEEEECCCHHHHHhCCEEEE
Confidence 468999999999999999999 59999999999999999999999999985 458999999999999888999865
No 73
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=9.3e-22 Score=149.54 Aligned_cols=74 Identities=22% Similarity=0.448 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+.+|||||||||+||++|+.+| +++||||||+|||+...+.+++.+.++. +.|.|||+|||+++++..+|+++.
T Consensus 377 ~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~-~~G~TVIvVeHdl~~l~~aD~ii~ 452 (842)
T 2vf7_A 377 TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK-RGGNSLFVVEHDLDVIRRADWLVD 452 (842)
T ss_dssp GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCCHHHHTTCSEEEE
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH-HcCCEEEEEcCCHHHHHhCCEEEE
Confidence 4689999999999999999999 5999999999999999999999999985 458999999999998877898764
No 74
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=2.1e-22 Score=127.45 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPL----------------LRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~----------------~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
...|+|+|||++|||+++.+|++++|||||++||+. ....+.+.+.++.++ |.|+|++||+++
T Consensus 82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~ 160 (171)
T 4gp7_A 82 NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPE 160 (171)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHH
Confidence 457999999999999999999999999999999999 558888888887665 899999999999
Q ss_pred HHHhhccee
Q psy5634 67 EARQAHTVI 75 (79)
Q Consensus 67 ~~~~~d~i~ 75 (79)
++..++++.
T Consensus 161 ~~~~~~~~~ 169 (171)
T 4gp7_A 161 EVEEVVFER 169 (171)
T ss_dssp HHHHEEEEE
T ss_pred Hhhhhhhcc
Confidence 998776653
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=3.1e-21 Score=132.34 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
+.+||+|||||++||++|+ .+|+++||||||++||+...+.+.+.+.++. + |.++|++||+.+....+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCTTGGGGCSEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCHHHHhhCceE
Confidence 3589999999999999997 6889999999999999999999999999873 3 78999999997655557764
No 76
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.81 E-value=1e-19 Score=128.58 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 3 ISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
..|||||||+++||++|+ .+|+++|||||+++||+..+..+.+.+.++.+ .+.++|++||+......+|+++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~~~~~d~~~ 407 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMFEKSDALV 407 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHHTTCSEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEEE
Confidence 459999999999999999 58999999999999999999999999988743 3789999999987777788865
No 77
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.78 E-value=4.2e-19 Score=123.77 Aligned_cols=72 Identities=33% Similarity=0.362 Sum_probs=61.3
Q ss_pred CCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 2 EISSRGGQQRRV------SFAVALMHD-PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv------~laral~~~-p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
+..|||||+||+ ++|++++.+ |+++||||||+|||+..+..+.+.+.++. . +.+||++||+++....+|++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IPQMIIITHHRELEDVADVI 355 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CSEEEEEESCGGGGGGCSEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CCeEEEEEChHHHHhhCCEE
Confidence 357999999988 567889999 99999999999999999999999998863 3 46899999998754557776
Q ss_pred e
Q psy5634 75 I 75 (79)
Q Consensus 75 ~ 75 (79)
+
T Consensus 356 ~ 356 (371)
T 3auy_A 356 I 356 (371)
T ss_dssp E
T ss_pred E
Confidence 5
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.78 E-value=1.5e-19 Score=115.78 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec---CHHHHHh-
Q psy5634 2 EISSRGGQQRRVSFAVA-----LMHDPELLILDE--PTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH---YIEEARQ- 70 (79)
Q Consensus 2 ~~~lS~G~kqrv~lara-----l~~~p~~lllDE--P~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH---~~~~~~~- 70 (79)
+.+||||||||+++|++ ++.+|++++||| ||+++|+...+.+.+.+.+ .+.|+|++|| +.+++..
T Consensus 74 ~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 74 GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHH
T ss_pred ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHH
Confidence 34799999999999996 999999999999 9999999999888877654 4677888885 8888765
Q ss_pred hcc
Q psy5634 71 AHT 73 (79)
Q Consensus 71 ~d~ 73 (79)
+++
T Consensus 150 ~~r 152 (178)
T 1ye8_A 150 RRL 152 (178)
T ss_dssp HTC
T ss_pred Hhc
Confidence 554
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.72 E-value=6.4e-18 Score=118.51 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 4 SSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 4 ~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
.||+|||||++||++|+ .+|+++||||||++||+..+..+++.+.++. .|+|++||. +. .+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~--~~~~i 337 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP--GAALT 337 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT--TCSEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc--cCCEE
Confidence 59999999999999999 8999999999999999999999999987752 699999994 33 55554
Q ss_pred e
Q psy5634 75 I 75 (79)
Q Consensus 75 ~ 75 (79)
+
T Consensus 338 ~ 338 (359)
T 2o5v_A 338 L 338 (359)
T ss_dssp E
T ss_pred E
Confidence 3
No 80
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.6e-18 Score=124.66 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH------HHH
Q psy5634 3 ISSRGGQQRRVSFAVA--LMHDPEL----LILDE-PTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE------EAR 69 (79)
Q Consensus 3 ~~lS~G~kqrv~lara--l~~~p~~----lllDE-P~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~------~~~ 69 (79)
.+||||||||+++||+ |+.+|++ +|||| ||++||+. .+.+.+++. +.+.|+|++||+.+ ++.
T Consensus 234 ~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~ 308 (460)
T 2npi_A 234 KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKK 308 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHH
Confidence 4799999999999999 9999999 99999 99999999 555544443 34789999999877 554
Q ss_pred h-hcc
Q psy5634 70 Q-AHT 73 (79)
Q Consensus 70 ~-~d~ 73 (79)
. +|+
T Consensus 309 ~~~dr 313 (460)
T 2npi_A 309 TFGPE 313 (460)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 4 676
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.66 E-value=1.1e-18 Score=114.33 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 8 G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
|||||++|||||+.+|+++||||||+| ++..+++.|.++ + .|.||| +|||++++..
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC------
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC
Confidence 999999999999999999999999999 788888888887 4 488999 9999987754
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.58 E-value=4.7e-16 Score=112.43 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhcCCcEEEEEecCH----------H
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPL-----LRQSIWNHLVQITKDGNKTVIITTHYI----------E 66 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~-----~~~~i~~~l~~~~~~~g~tvi~~tH~~----------~ 66 (79)
+.+||+||+||+.+++++..+|+++++| ||++||+. .+..+.+++..+. +.|.|+|++||+. .
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~ 428 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDS 428 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSS
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH-hCCCEEEEEECcccccCcccccCc
Confidence 4579999999999999999999999999 99999999 9999999888775 4589999999998 5
Q ss_pred HHHh-hccee
Q psy5634 67 EARQ-AHTVI 75 (79)
Q Consensus 67 ~~~~-~d~i~ 75 (79)
.+.. +|+++
T Consensus 429 ~l~~~~D~vi 438 (525)
T 1tf7_A 429 HISTITDTII 438 (525)
T ss_dssp CCTTTCSEEE
T ss_pred ccceeeeEEE
Confidence 5554 67765
No 83
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.56 E-value=6.8e-15 Score=112.86 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIW-NHLVQITKDGNKTVIITTHYIEEARQAHT 73 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~-~~l~~~~~~~g~tvi~~tH~~~~~~~~d~ 73 (79)
.+++|+||+|++.++++ +.+|+++|||||++|+|+.....+. .++..+.++.|.|+|++||+++.+..+++
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 35789999999999998 8999999999999999999999987 66666655568999999999987654443
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.52 E-value=4.2e-14 Score=108.64 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 3 ISSRGGQQRRVSFAVAL--MHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 3 ~~lS~G~kqrv~laral--~~~p~~lllDEP~~glD~~~~~~i-~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
..+|+|++++..+++++ +.+|+++|||||++|+|+.....+ +.++..+.++.|.++|++||+.+.+..+|++
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~ 794 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQI 794 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTC
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhccc
Confidence 46888888888888888 999999999999999999998888 5666666554589999999998877667764
No 85
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.47 E-value=4.9e-16 Score=110.72 Aligned_cols=71 Identities=7% Similarity=0.082 Sum_probs=59.8
Q ss_pred CCHH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC----CcEEEEEecC
Q psy5634 5 SRGG--QQRRVSFAVALMH----------DPELLILDEPTVGVDPLLRQSIWNHLVQITK----DG----NKTVIITTHY 64 (79)
Q Consensus 5 lS~G--~kqrv~laral~~----------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~----~~----g~tvi~~tH~ 64 (79)
||+| |+||+.||++|+. +|+++++||||+|||+..+.++++.++++.+ +. ..+++++||+
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence 7899 9999999999999 9999999999999999999999999998752 22 3678899998
Q ss_pred HHH--HHh-hccee
Q psy5634 65 IEE--ARQ-AHTVI 75 (79)
Q Consensus 65 ~~~--~~~-~d~i~ 75 (79)
++. +.. +|++.
T Consensus 235 l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 235 VCHYDFPVLMDKLI 248 (413)
T ss_dssp TTSTTHHHHHHHHH
T ss_pred CCccCHHHHHHHHH
Confidence 775 544 55543
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.41 E-value=5.6e-13 Score=103.15 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLR-QSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~-~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
+++|+++++ ++++++++.+|+++|||||++|+|+... ..++.++..+.++.|.++|++||+.+++.. +|++
T Consensus 850 stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 850 STFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCS
T ss_pred hhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcc
Confidence 456777765 9999999999999999999999999985 447788888765558999999999999875 5553
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.37 E-value=1.2e-12 Score=87.93 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=49.4
Q ss_pred CCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 3 ISSRGGQ-QRRVSFAVALMHDPELLILDEPTV---G---VDP-LLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 3 ~~lS~G~-kqrv~laral~~~p~~lllDEP~~---g---lD~-~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.++|.++ +|++. ++++..+|+++++|||++ + +|+ .....+.+.|++++++.|.|||++||+.
T Consensus 128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 4688888 66666 999999999999999999 5 455 6667888999998777789999999995
No 88
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.34 E-value=1.3e-12 Score=87.35 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=51.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTV--GVDPLLR---QSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~--glD~~~~---~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
+..||+|+++++ ++++.+|+++++|||++ ++|+... ..+++.|.+++++.|.|||+++|+....
T Consensus 116 ~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 116 PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 567999997765 68888999999999999 9997443 7788888888766689999999998765
No 89
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.32 E-value=3.6e-12 Score=81.47 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEecCH--------HHHHh-h
Q psy5634 5 SRGGQQRRVSFAVALMHDPE--LLILDEPTVGV--DPLLRQSIWNHLVQITKDGNKTVIITTHYI--------EEARQ-A 71 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~--~lllDEP~~gl--D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~--------~~~~~-~ 71 (79)
.|.++.++...+.+...+|+ ++++|||++++ |+.....+++.+.+++++.|.|||++||+. ..+.. +
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 48888888888777778999 99999999877 998889999999998777799999999998 33554 6
Q ss_pred cceec
Q psy5634 72 HTVID 76 (79)
Q Consensus 72 d~i~~ 76 (79)
|+++.
T Consensus 184 d~vi~ 188 (235)
T 2w0m_A 184 DGIIR 188 (235)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 77653
No 90
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.30 E-value=5e-14 Score=90.75 Aligned_cols=72 Identities=10% Similarity=0.221 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHH---HHhcCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634 5 SRGGQQRRVSFAV---ALMHDPELLILDEPTVGV----DPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID 76 (79)
Q Consensus 5 lS~G~kqrv~lar---al~~~p~~lllDEP~~gl----D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~ 76 (79)
++|.+.++-.... +|+.+|++++|||||+|+ |+..+.++.+.+.++.++.|.|+|++|||++++.. +|+++.
T Consensus 121 ~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 121 LAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence 3444444444444 788999999999999998 78899999999999876568999999999999976 888754
No 91
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.29 E-value=1.2e-12 Score=90.48 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 7 ~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
|||+||++|++||..+|+++++|||++. ++.+.+..+. .++.|+|+++|+.+....+|+++
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEECSSHHHHHHHHH
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEcccHHHHHhhhhe
Confidence 7999999999999999999999999982 3456666653 43568999999998655677764
No 92
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.25 E-value=8e-12 Score=94.48 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 4 SSRGGQQRRVSFAVAL--MHDPELLILDEP---TVGVDPLLR-QSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 4 ~lS~G~kqrv~laral--~~~p~~lllDEP---~~glD~~~~-~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
.+|+|+++++.+++++ +.+|+++||||| |+++|+... ..+.+.+.+ .|.++|++||+.++...
T Consensus 635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 635 GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFELTAL 703 (765)
T ss_dssp CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHHTC
T ss_pred cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHh
Confidence 5899999999999999 999999999999 888998875 467776654 37899999999987653
No 93
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.21 E-value=1.7e-11 Score=93.10 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKDGNKTVIITTHYIEEARQAHT 73 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i-~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~ 73 (79)
+++|+++++ ++.+...+.+|+++|||||++|+|+.....+ +.++..+.++.|.++|++||+.+.+..+|+
T Consensus 668 stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~ 738 (800)
T 1wb9_A 668 STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK 738 (800)
T ss_dssp --CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhh
Confidence 356777765 4444556899999999999999999887775 677777755458999999999987655554
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.16 E-value=2.3e-11 Score=78.80 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 9 QQRRVSFAVALMHDPELLILDEPTVGVD-----PLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 9 ~kqrv~laral~~~p~~lllDEP~~glD-----~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
+.........-..+|+++++|||++++| +..++.+.+++..+.+ .|.|||++||+++.+
T Consensus 122 ~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 122 NFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPDPQ 185 (251)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC---
T ss_pred HHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCCCC
Confidence 3333333444457999999999999997 6767778888887754 489999999999887
No 95
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.15 E-value=6.1e-14 Score=91.50 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc------CCcEEEEEecCHHHHHh-h
Q psy5634 4 SSRGGQQRRVSF-----AVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD------GNKTVIITTHYIEEARQ-A 71 (79)
Q Consensus 4 ~lS~G~kqrv~l-----aral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~------~g~tvi~~tH~~~~~~~-~ 71 (79)
+|||||+||+++ +++++.+|++++||||++++|......+.+.+.+..++ .+...|+++|+++++.. +
T Consensus 122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~ 201 (218)
T 1z6g_A 122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQL 201 (218)
T ss_dssp CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHH
Confidence 689999999999 89999999999999999999998888888777765432 45788999999988754 5
Q ss_pred ccee
Q psy5634 72 HTVI 75 (79)
Q Consensus 72 d~i~ 75 (79)
++++
T Consensus 202 ~~ii 205 (218)
T 1z6g_A 202 KNYL 205 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 96
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.08 E-value=2.3e-10 Score=72.88 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=48.7
Q ss_pred CCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 4 SSRGGQ--QRRVSFAVALMHD-PELLILDEPTVGVDPLL--------RQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 4 ~lS~G~--kqrv~laral~~~-p~~lllDEP~~glD~~~--------~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+.|+++ +++++.+++++.+ |+++++|||++.+|+.. ...+++.|++++++.|.|+|+++|...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 345553 5688888899986 99999999999999732 244566677777666899999999865
No 97
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.01 E-value=7.7e-11 Score=80.69 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~--~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
+|| |||+++||+++.+|+ +++|| ||+|+|+... +.++.++.|.|+|++||
T Consensus 204 eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 204 ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTK 255 (302)
T ss_dssp HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEEC
T ss_pred HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeC
Confidence 467 899999999999999 99999 9999998854 23444445899999999
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.99 E-value=6.5e-10 Score=74.60 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+++|+++|..+|+++++|||+ |+.....++ +. +. .|.+|++++|+.+....+|+++
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~~~~~~dri~ 143 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNTAIDTIHRIV 143 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSSHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcchHHHHHHHHh
Confidence 799999999999999999999 888765443 32 33 4889999999987555567654
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.97 E-value=2.5e-10 Score=73.02 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=46.9
Q ss_pred CHHH-HHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 6 RGGQ-QRRVSFAVALMH-------DPELLILDEPTVGVDPLL------------RQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 6 S~G~-kqrv~laral~~-------~p~~lllDEP~~glD~~~------------~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
+.++ ++.+..++.++. +|+++++|||++++|+.. ...+++.+.+++++.|.|||++||..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 3443 333555555555 999999999999999841 23677778877766689999999955
Q ss_pred HH----HHh-hccee
Q psy5634 66 EE----ARQ-AHTVI 75 (79)
Q Consensus 66 ~~----~~~-~d~i~ 75 (79)
.. +.. +|+++
T Consensus 181 ~~~g~~~~~~~d~~l 195 (231)
T 4a74_A 181 ANGGHILAHSATLRV 195 (231)
T ss_dssp ---------CCSEEE
T ss_pred cCcchhhHhhceEEE
Confidence 44 554 56654
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.97 E-value=6.4e-10 Score=77.22 Aligned_cols=63 Identities=17% Similarity=0.085 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 6 RGGQQRRVSFAVALM-------HDPELLILDEPTVGVDPLL------------RQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 6 S~G~kqrv~laral~-------~~p~~lllDEP~~glD~~~------------~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
|.++++++.++++++ .+|+++++||||+++|+.. ..+++..|.+++++.|.|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 578899999999999 6899999999999999852 356667777777777899999999875
Q ss_pred HH
Q psy5634 67 EA 68 (79)
Q Consensus 67 ~~ 68 (79)
..
T Consensus 288 ~~ 289 (349)
T 1pzn_A 288 RP 289 (349)
T ss_dssp --
T ss_pred cc
Confidence 43
No 101
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.95 E-value=5.1e-11 Score=80.33 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.+|||||+||+++|||++. ++++|||+.|||+.. .++++.+.+ . .++|++.|..+.
T Consensus 97 ~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 97 EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAKADT 152 (270)
T ss_dssp HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETTGGG
T ss_pred HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEecccc
Confidence 4699999999999999886 999999999999987 344455533 3 788888887653
No 102
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.95 E-value=2.7e-10 Score=79.91 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 4 SSRGGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~--~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
+|| +||++|||+++.+|+ +++|| ||+|+|+.... .++.+..|.|+|++||.
T Consensus 261 eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 261 ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 467 899999999999999 99999 99999988542 33444458999999993
No 103
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.85 E-value=3e-09 Score=74.33 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634 14 SFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~ 76 (79)
+|++||..+|+++++|||+ |+...+ .+.+.+. .|.++++++|+.+.+..+|+++.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~-~G~~vl~t~H~~~~~~~~dRli~ 242 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIR----LALTAAE-TGHLVFGTLHTTSAAKTIDRVVD 242 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH-TTCEEEEEESCSSHHHHHHHHHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh-cCCEEEEEEccChHHHHHHHHhh
Confidence 8999999999999999999 655533 3344443 48999999999998876888754
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.73 E-value=2.6e-08 Score=71.97 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=51.9
Q ss_pred HHHHHHHHHh-cCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH---------Hh-hcce
Q psy5634 11 RRVSFAVALM-HDPELLILDEPTV-----GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA---------RQ-AHTV 74 (79)
Q Consensus 11 qrv~laral~-~~p~~lllDEP~~-----glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~---------~~-~d~i 74 (79)
+.-.+...|. .+|+++++||||+ ++|+..++.+++++.++.+ .|.|+|++||+++++ .. +|++
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~v 204 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNV 204 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEE
Confidence 3444555664 6899999999997 4699999999999998865 489999999999874 44 7876
Q ss_pred ec
Q psy5634 75 ID 76 (79)
Q Consensus 75 ~~ 76 (79)
+.
T Consensus 205 i~ 206 (525)
T 1tf7_A 205 VI 206 (525)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 105
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.72 E-value=9.8e-11 Score=80.45 Aligned_cols=57 Identities=14% Similarity=0.036 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
..|||||+||+++|++++.+|+++|+|||+..+|+.. . .+.+..+ ..|+++|+.+..
T Consensus 175 ~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~---~l~~~~D-~~I~V~a~~~~~ 231 (312)
T 3aez_A 175 PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----L---MVSDLFD-FSLYVDARIEDI 231 (312)
T ss_dssp EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----C---CGGGGCS-EEEEEEECHHHH
T ss_pred ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----H---HHHHhcC-cEEEEECCHHHH
Confidence 4799999999999999999999999999999998521 1 1222223 457778887664
No 106
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.71 E-value=4.3e-10 Score=76.60 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTV-GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~-glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
.++|||+|||+.++|+++ ++++||||+ |||+... +.++++.++.+.++|+++||+.
T Consensus 112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 358999999999888886 999999998 5999873 4455554444789999999973
No 107
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.63 E-value=3.5e-11 Score=82.84 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
+..|||||||| |||++.+|++|| |++||+.+...+.. +||++..+..+|++
T Consensus 198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~~~~~aD~i 248 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQTFRFEQPC 248 (305)
T ss_dssp TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEEEEECCCCC
T ss_pred ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHHHHHhCCEE
Confidence 45899999999 999999999999 99999998888752 16766555555655
No 108
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.63 E-value=2.1e-09 Score=74.83 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEecCHHHHHhhcce
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK-DGNK-----TVIITTHYIEEARQAHTV 74 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~-~~g~-----tvi~~tH~~~~~~~~d~i 74 (79)
..||+|| |++++| +.+|++ |+|+|+.....+.+++.+..+ +.|. ||+++|||++. .-+|++
T Consensus 170 ~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~-~i~d~v 236 (347)
T 2obl_A 170 TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND-PIGDEV 236 (347)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC-HHHHHH
T ss_pred HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC-hhhhhe
Confidence 4689999 899998 577777 999999999999999988754 4577 99999999872 225553
No 109
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.60 E-value=1.6e-08 Score=63.85 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=45.3
Q ss_pred CCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q psy5634 4 SSRGGQQRR-VSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD 53 (79)
Q Consensus 4 ~lS~G~kqr-v~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~ 53 (79)
.+|+||+|+ +..+++++.+|..+++||||+++|+....++++.+.++..+
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 589999999 89999999999999999999999999999999999987644
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.59 E-value=2.1e-07 Score=57.98 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=39.5
Q ss_pred HhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 19 LMHDPELLILDEPTV-GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 19 l~~~p~~lllDEP~~-glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
.+.+|+++++|||++ ++|+..+..+.+++....+ .|.++|++||...
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence 456999999999985 9999999999998887654 4789999999753
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.57 E-value=2.1e-09 Score=69.15 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=35.4
Q ss_pred CCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q psy5634 4 SSRGGQQRRV-SFAV---ALMHDPELLILDE--PTVGVDPLLRQSIWNHLV 48 (79)
Q Consensus 4 ~lS~G~kqrv-~lar---al~~~p~~lllDE--P~~glD~~~~~~i~~~l~ 48 (79)
++|+|||+++ ++.+ |++.+|+++|+|| |+..+|+...+.+.+.+.
T Consensus 83 ~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 83 DLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp CHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 5899999888 4444 5789999999999 899999887666655543
No 112
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.57 E-value=5.8e-09 Score=74.58 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCc-----EEEEEecCHH
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK---DGNK-----TVIITTHYIE 66 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~---~~g~-----tvi~~tH~~~ 66 (79)
.||+|| ||+++| +.+|++ |+|+|+.....+.+++.++.+ +.|. ||+++|||++
T Consensus 258 ~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 258 RYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp HHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred HHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence 589999 999998 888888 999999999999999988755 2364 9999999996
No 113
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.45 E-value=1.2e-11 Score=79.04 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=54.3
Q ss_pred CCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 2 EISSRGGQ----QRRVSFAVALMHDPELLILDEPTVG-------VDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 2 ~~~lS~G~----kqrv~laral~~~p~~lllDEP~~g-------lD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
+.++|+|+ +||++++++++.+|.++++|||+++ ||+.....+.+.+.+..++.|.|++.++|+.
T Consensus 87 ~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 87 VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34688886 4688899999999999999999999 9999999898888876555588999999974
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.35 E-value=9.4e-08 Score=65.42 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 5 SRGGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~--~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
++...+||+++||+++.+|+ ++.|| |+++ ..+.+.+.++.+..|.|+|++||+...
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------QNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------THHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------HHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 34566899999999999999 44555 4444 445555566554458999999998543
No 115
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=6.8e-07 Score=60.52 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=37.3
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+..+|+++++|||++ ||+...+.+.+.+.+.. .+.++|++||+..
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS 175 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHH
Confidence 366899999999999 99999999999988763 3689999999864
No 116
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.33 E-value=1.1e-06 Score=56.38 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=32.4
Q ss_pred cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 21 HDPELLILDEPTVGVDPL-------L-----RQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~-------~-----~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
.+|+++++|||++.+|+. . ...++..+.+++++.|.|||+++|.....
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 589999999999999975 2 34566667777666689999999976543
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.30 E-value=3.8e-08 Score=64.56 Aligned_cols=53 Identities=6% Similarity=-0.032 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+..||+||+||+++ ++++.+|+++|+|||....+.. +.++ .+.+|+++||+..
T Consensus 114 ~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~~~ 166 (245)
T 2jeo_A 114 VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDSDV 166 (245)
T ss_dssp ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCHHH
T ss_pred cccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCHHH
Confidence 35799999999988 6888899999999999888764 2222 2689999999743
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.24 E-value=1.7e-06 Score=53.37 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=34.8
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE-EEEEecC
Q psy5634 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKT-VIITTHY 64 (79)
Q Consensus 19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~t-vi~~tH~ 64 (79)
++.+|+++++|||++ +++..++.+++++....++ |.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCC
Confidence 466899999999998 6655588899988877544 677 8888884
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.21 E-value=1.7e-07 Score=64.74 Aligned_cols=60 Identities=10% Similarity=-0.107 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 5 SRGGQQRRVSFAVALM-HDPELLILDE---PT------VGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 5 lS~G~kqrv~laral~-~~p~~lllDE---P~------~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
+|+|++++..+++++. .+|++++||| |+ .++|+..+..+.+.+.++.++.|.++++++|.
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 259 IQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred HHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4567777887877764 6999999999 65 58999999999999988766557899999985
No 120
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.20 E-value=3.8e-07 Score=67.27 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=40.9
Q ss_pred hcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEecCHHHH
Q psy5634 20 MHDPELLILDEP------TVGVDPLLRQSIWNHLVQITK-DGNKTVIITTHYIEEA 68 (79)
Q Consensus 20 ~~~p~~lllDEP------~~glD~~~~~~i~~~l~~~~~-~~g~tvi~~tH~~~~~ 68 (79)
...|+++++||| |+|||+..+..+.+++.++.+ ..+.++++++|+.+.+
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 346999999999 999999999999999999654 3478999999997644
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.12 E-value=3.8e-06 Score=58.69 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI 75 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~ 75 (79)
+.+|+++|..+|+++++|||+ |+..... .+.. + ..|.+++.++|+.+....+++++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~-~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-A-ETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-H-TTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-H-hcCCEEEEEECcchHHHHHHHHH
Confidence 468999999999999999999 6665433 3333 2 34789999999976444466653
No 122
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.07 E-value=4e-07 Score=64.85 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 5 SRGGQQRRVSFAVALMHDPE---LLILDEPT-VGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~---~lllDEP~-~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
++.+++++++|+|+++.+|+ ++++|||| .|+|+... .++..+. . +.++|+|.|..+.
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKADT 179 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEcccC
Confidence 45667788889999999999 99999999 69998873 3344443 3 6778888776543
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.97 E-value=7.1e-07 Score=60.91 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
++|+||+||+..+++++.+|+++ ||| .++.+.+++++ .+.+|+++||+.
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~ 189 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGD 189 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccC
Confidence 47999999999989999999987 998 66777777763 478999999964
No 124
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.95 E-value=9.5e-06 Score=57.45 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=35.5
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 21 HDPELLILDEPTVGVDPLLR------------QSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~------------~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+|+++++|||++.+|+... .+++..|++++++.|.|||+++|..
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 57999999999999997543 5677888888877799999999983
No 125
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.89 E-value=2.4e-07 Score=60.58 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=30.5
Q ss_pred HHH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHH
Q psy5634 17 VAL-MHDPELLILD----EPTVGVDPLLRQSIWNHLVQIT 51 (79)
Q Consensus 17 ral-~~~p~~lllD----EP~~glD~~~~~~i~~~l~~~~ 51 (79)
+++ +.+|+++++| |||+++|+...+.+.+.+.++.
T Consensus 158 ~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 158 YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 566 8999999999 9999999998888888877653
No 126
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.89 E-value=4.3e-06 Score=59.49 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
.+||+|++|++.++++|+..|.++++ +.+|+... ...+.+.+..++.+.+++++|-
T Consensus 251 ~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 251 KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 35899999999999999999999999 99998766 4445555555555777777664
No 127
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.82 E-value=4.4e-05 Score=48.83 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=35.8
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 21 HDPELLILDEPTVGV--DPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 21 ~~p~~lllDEP~~gl--D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.+|+++++|+|++.+ |+....+++..+.+.+++.|.|||+++|....
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 589999999999887 55445555566667666778999999998764
No 128
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.81 E-value=2e-07 Score=63.38 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPL 38 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~ 38 (79)
..+||||+||+++|++...+|+++|+|||++++|+.
T Consensus 133 ~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 133 KSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp TTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred cccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 468999999999873333399999999999999985
No 129
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.62 E-value=0.00019 Score=50.92 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 3 ISSRGGQQRRVSFAVALM--HDPELLILDEPTVGVD--------PLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~--~~p~~lllDEP~~glD--------~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
..+|.++.+ +.++.+. .+|+++++|+++...+ ......+.+.|+.++++.|.+||+++|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 357888776 4556665 6899999999987763 334466777788888777999999999
No 130
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.58 E-value=0.00015 Score=47.22 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=37.0
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 16 AVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 16 aral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
+..++..++++||| ||+.....+.+.+. .+.||+++||+++++..
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHHHHHH
Confidence 34556678999999 99999999987654 37999999999987654
No 131
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.55 E-value=0.00023 Score=51.66 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 3 ISSRGGQQRRVSFAVALM--H---------------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~--~---------------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
+.+||||+|-.-++.+.+ . .-+++++||. +-+|....+.++++++++ |.-+|+++=+
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~ 451 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE 451 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc
Confidence 579999999655544332 2 2368999999 999999999998888754 7888898866
No 132
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.51 E-value=2.8e-07 Score=57.77 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC-HHHHHh-hccee
Q psy5634 6 RGGQQRRVSFAV------ALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY-IEEARQ-AHTVI 75 (79)
Q Consensus 6 S~G~kqrv~lar------al~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~-~~~~~~-~d~i~ 75 (79)
|+|+++++.++. ++..+|+...+|+ ++|+..... ++.+..+. +.+.++|.+||. ++.+.. +++++
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh
Confidence 666666666666 7777887777773 899988888 78777764 447899999998 777765 66654
No 133
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.51 E-value=8.1e-07 Score=56.28 Aligned_cols=52 Identities=12% Similarity=0.124 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEE-------EEeCCCCC---CCHHHHHHHHHHHHHHHhcCC
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELL-------ILDEPTVG---VDPLLRQSIWNHLVQITKDGN 55 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~l-------llDEP~~g---lD~~~~~~i~~~l~~~~~~~g 55 (79)
.|||||+||++||||++.+|++. .-|.|..+ +|....+.+.+.+.+..++.|
T Consensus 103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhccC
Confidence 49999999999999999999873 23444321 233455777788877766654
No 134
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.45 E-value=5e-05 Score=57.44 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEE-EecCHHHHHh
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTV-GVDPLLRQSIWNHLVQITKDGNKTVII-TTHYIEEARQ 70 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~-glD~~~~~~i~~~l~~~~~~~g~tvi~-~tH~~~~~~~ 70 (79)
-+|.|+.++..+++.++.+++++|+|||.. ++|......+++.+.... ....++++ +||+.+.+..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHH
Confidence 368999999999999999999999999996 999877766666665543 23567777 5998765543
No 135
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.44 E-value=0.00032 Score=48.58 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCCC----------H---HHHHHHHHHHHHH---HhcCCcEEEEEecCHH
Q psy5634 11 RRVSFAVALMHD--PELLILDEPTVGVD----------P---LLRQSIWNHLVQI---TKDGNKTVIITTHYIE 66 (79)
Q Consensus 11 qrv~laral~~~--p~~lllDEP~~glD----------~---~~~~~i~~~l~~~---~~~~g~tvi~~tH~~~ 66 (79)
+.+.++++++.+ |+++++|||++.+. + ...+.+.+.+.++ +++.|.|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 456677777755 99999999999883 2 1112333334433 4566899999999653
No 136
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.33 E-value=0.00049 Score=49.72 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---hcCCcEEEEEecCHHHH
Q psy5634 7 GGQQRRVSFAVALMHDPELLILDEP----------TVGVDPLLRQSIWNHLVQIT---KDGNKTVIITTHYIEEA 68 (79)
Q Consensus 7 ~G~kqrv~laral~~~p~~lllDEP----------~~glD~~~~~~i~~~l~~~~---~~~g~tvi~~tH~~~~~ 68 (79)
++++.|..+.+|....|.++++||+ +.|.|+...+.+.+++..+- ...+..||.+||.++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 5678888999999999999999999 34666665555555555442 23468899999987643
No 137
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.12 E-value=2.6e-05 Score=48.47 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT 51 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~ 51 (79)
..+|+|++|+++++|++.++|+++ +|+...+.+++.+..+.
T Consensus 108 ~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 108 HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 358999999999999999999876 58888777777766553
No 138
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.06 E-value=0.005 Score=41.55 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 7 GGQQRRVSFAVALMHDPELLILDEP-TVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 7 ~G~kqrv~laral~~~p~~lllDEP-~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
..+.+|.+++.+...+++++|+||| +.++|.....++....... . ...+++++.
T Consensus 165 p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~-~-~~~~~lv~~ 219 (295)
T 1ls1_A 165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL-G-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH-C-CSEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc-C-CCEEEEEEe
Confidence 3455688888888899999999999 9999998888887766554 2 234554444
No 139
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.99 E-value=0.003 Score=43.79 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEec
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG-NKTVIITTH 63 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~-g~tvi~~tH 63 (79)
+.||.++.+|+..|...+.++++++.|+|...+ ..+...++++.++. |..+|++-|
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHHHHHHHHHhcCCCCEEEEec
Confidence 468999999999999999999999999986543 34555556665555 788888875
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.0024 Score=43.85 Aligned_cols=61 Identities=8% Similarity=0.108 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe--cCHH
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT--HYIE 66 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t--H~~~ 66 (79)
..+|+|+++.+. +.+...++-++++| +|..++|......++..+.+... +..+|++. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 457889988776 55555677889999 99999999988888777766532 67788887 7763
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.79 E-value=0.00082 Score=45.90 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=27.2
Q ss_pred CCCHHHHHHH---HHHHHHhcCCCEEEEeCCCC
Q psy5634 4 SSRGGQQRRV---SFAVALMHDPELLILDEPTV 33 (79)
Q Consensus 4 ~lS~G~kqrv---~laral~~~p~~lllDEP~~ 33 (79)
.+|+|+.+++ ++++++..+|+++|+|+|..
T Consensus 165 ~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 165 HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 5688999999 89999999999999999975
No 142
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.79 E-value=2.3e-05 Score=57.17 Aligned_cols=50 Identities=10% Similarity=0.200 Sum_probs=34.6
Q ss_pred HHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH---HhcCCcEEEEEecCHH
Q psy5634 16 AVALMHDPE-LLILDEPTVGVDPLLRQSIWNHLVQI---TKDGNKTVIITTHYIE 66 (79)
Q Consensus 16 aral~~~p~-~lllDEP~~glD~~~~~~i~~~l~~~---~~~~g~tvi~~tH~~~ 66 (79)
++++...|. ++++||+.+-++.. ...+.+.+.++ .+..|.++|++||.+.
T Consensus 290 a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 290 HPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred ccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 344566787 89999998888733 23444444444 3445889999999976
No 143
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.76 E-value=0.00085 Score=46.16 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy5634 4 SSRGGQQRRVSFAVAL---MH--DPELLILDEPT 32 (79)
Q Consensus 4 ~lS~G~kqrv~laral---~~--~p~~lllDEP~ 32 (79)
.+|+|++||.+++++| .. ++.++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 76 89999999996
No 144
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.61 E-value=0.0017 Score=46.42 Aligned_cols=53 Identities=2% Similarity=-0.151 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 13 VSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 13 v~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
+.++++|..+++++++|+|+..|.+.....+.+.+.+..+..|..|+++|.+-
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 78999999999999999999999999999999999874456689999988653
No 145
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.13 E-value=0.0063 Score=41.13 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCcEEEE-EecCHHHHHh
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK---DGNKTVII-TTHYIEEARQ 70 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~---~~g~tvi~-~tH~~~~~~~ 70 (79)
+.+++ .+.+|+++|+| |+|+|+.....+.++ .+... ..+.++++ ++|..+.+..
T Consensus 174 ~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el-~~~l~~~~~~~~~lVl~at~~~~~~~~ 231 (296)
T 2px0_A 174 QQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDEL-KETIPFESSIQSFLVLSATAKYEDMKH 231 (296)
T ss_dssp HHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHH-HHHSCCCTTEEEEEEEETTBCHHHHHH
T ss_pred HHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHH-HHHHhhcCCCeEEEEEECCCCHHHHHH
Confidence 44455 45899999999 889998766555443 33322 22334555 5898777665
No 146
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.94 E-value=0.016 Score=40.98 Aligned_cols=44 Identities=11% Similarity=0.338 Sum_probs=34.6
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 21 HDPELLILDEPTVGVDP-LLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~-~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+|++|++||+..-.+. ...+.++..+.... +.|..+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCC
Confidence 38999999999776653 66777888888765 4478899999973
No 147
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.88 E-value=0.0017 Score=40.29 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy5634 11 RRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQI 50 (79)
Q Consensus 11 qrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~ 50 (79)
+....|++++.+|++.++| |+++|....+++++.+.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999998887653
No 148
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.50 E-value=0.05 Score=35.66 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhc---CCcEEEEEecCHH
Q psy5634 6 RGGQQRRVSFAVALMHDPELLILDEPTVGVDP----------LLRQSIWNHLVQITKD---GNKTVIITTHYIE 66 (79)
Q Consensus 6 S~G~kqrv~laral~~~p~~lllDEP~~glD~----------~~~~~i~~~l~~~~~~---~g~tvi~~tH~~~ 66 (79)
+++++.+..+..+...+|.++++||+.+-.+. .....++..+...... .+..+|.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 45677788888888889999999999765542 2333444444433211 2456777888754
No 149
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.49 E-value=0.019 Score=39.49 Aligned_cols=49 Identities=14% Similarity=-0.002 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 10 QRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 10 kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+...+++++..++.++++|.++. . .+.+.++.+.+..+.|+|++||.-
T Consensus 231 ~eL~~i~ral~~de~llvLDa~t~-~------~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 231 DEMKKIARVTKPNLVIFVGDALAG-N------AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGGGT-T------HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHHhcCCCCEEEEecHHH-H------HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 445568899998888889985554 2 444555556555689999999953
No 150
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.39 E-value=0.03 Score=37.78 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEecC
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKT--VIITTHY 64 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~t--vi~~tH~ 64 (79)
||.++++|+..|...+.++++++.|+|... ...+...+.++.++.|.. +|++-|-
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 788899999999988889999999998643 334555556655555667 8888763
No 151
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.36 E-value=0.011 Score=40.85 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634 6 RGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74 (79)
Q Consensus 6 S~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i 74 (79)
+++...+..|+.++..+|+.+++|||.. .++.+.+..+ ..+..|++.++|.......++|+
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l-~~g~~~~l~t~H~~~~~~~~~Rl 296 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVA-ASGHGGSITSCHAGSCELTFERL 296 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHH-HTTCCSCEEEEECSSHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHH-hcCCCeEEEEECCCCHHHHHHHH
Confidence 3556788899999999999999999985 2345556655 34456789999987644445654
No 152
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.29 E-value=0.02 Score=38.49 Aligned_cols=47 Identities=15% Similarity=0.027 Sum_probs=35.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCcEEEEEecCHHHH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITK--DGNKTVIITTHYIEEA 68 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~--~~g~tvi~~tH~~~~~ 68 (79)
.+|.++++||+... |+.....+...+.+... ..+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999776 88887777777655433 1478999999987543
No 153
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.59 E-value=0.031 Score=37.77 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=38.0
Q ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCCH--------H----HHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 11 RRVSFAVALM---HDPELLILDEPTVGVDP--------L----LRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 11 qrv~laral~---~~p~~lllDEP~~glD~--------~----~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+.+..++.++ .+|+++++|+.++-... . ...++...|..++++.+.+||+++|-..
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 4566666666 67999999998865432 1 1244556666776677899999998654
No 154
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.53 E-value=0.018 Score=39.47 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy5634 4 SSRGGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWNHLVQITK 52 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~ 52 (79)
.+|+|+++++..+++++. +|+++. +|++|.....++++.+.+...
T Consensus 210 ~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 210 RRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 468899999999999887 688876 899999999999999988654
No 155
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.28 E-value=0.061 Score=36.75 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=36.8
Q ss_pred HHHHHHHHh----cCCCEEEEeCCCCCCCHH------------HHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 12 RVSFAVALM----HDPELLILDEPTVGVDPL------------LRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 12 rv~laral~----~~p~~lllDEP~~glD~~------------~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.+..++.++ .+++++++|+.++-.... ...++...|..++++.+.+||+++|....
T Consensus 205 ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 205 LLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp HHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred HHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceec
Confidence 344444555 579999999998765331 13455566677777778999999997543
No 156
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.14 E-value=0.036 Score=34.20 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy5634 13 VSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT 51 (79)
Q Consensus 13 v~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~ 51 (79)
...|++++.+|++.++| ++++|.....++++.+.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45688999999999999 99999999999988877643
No 157
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.05 E-value=0.00024 Score=50.24 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=40.4
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634 22 DP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI 75 (79)
Q Consensus 22 ~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~ 75 (79)
+| ++.++|||+.++|+...++.++.+.......|.|++ +|....+.. ++++.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~ 193 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVY 193 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHH
Confidence 78 999999999999999999999988876223466653 998877655 55543
No 158
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.55 E-value=0.054 Score=35.00 Aligned_cols=64 Identities=25% Similarity=0.216 Sum_probs=40.6
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH--HHHhhccee
Q psy5634 10 QRRVSFAVALM--HDPELLILDEPTV--GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE--EARQAHTVI 75 (79)
Q Consensus 10 kqrv~laral~--~~p~~lllDEP~~--glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~--~~~~~d~i~ 75 (79)
+..+..++..+ .+.+++||||... .++.....++++.+.+ +-.+..||+++.+.. .+..+|.|-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~--Rp~~~~vIlTGr~ap~~l~e~AD~VT 175 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA--RPGHQTVIITGRGCHRDILDLADTVS 175 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT--SCTTCEEEEECSSCCHHHHHHCSEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh--CcCCCEEEEECCCCcHHHHHhCccee
Confidence 33444555666 5579999999865 2333334567777764 334689999999864 334567553
No 159
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.45 E-value=7.2e-06 Score=59.61 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE--EecCHHHHHh
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII--TTHYIEEARQ 70 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~--~tH~~~~~~~ 70 (79)
.+|+||+||.+++ ++ | ++|+|+.....+++.+.++. ..+.|+++ +||+++++..
T Consensus 400 ~~s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~-~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 400 WVRGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWD-PKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp EESSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEE-TTTTEEEECSCCTHHHHHHH
T ss_pred EEeCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEc-ccCCEEEEcccHHHHHHHHH
Confidence 3678887776553 12 6 99999988777777666664 34788875 9999998764
No 160
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.32 E-value=0.32 Score=33.61 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=33.8
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCHHH------------H----HHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 11 RRVSFAVALM--HDPELLILDEPTVGVDPLL------------R----QSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 11 qrv~laral~--~~p~~lllDEP~~glD~~~------------~----~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+...+++.++ .+++++++|++++-..... + .+++..|..++++.+.+||+++|-..
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~ 201 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 201 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 3445566564 6799999999987663211 1 22333344445666899999988643
No 161
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.15 E-value=0.065 Score=39.47 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 8 G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
+.++...+.+.++.+|..++++.+++++|.... ...+++.+....++.||+++||
T Consensus 169 ~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 169 IGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp HHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence 356788899999999999999999999998844 4567777765555688888888
No 162
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.04 E-value=0.0017 Score=41.04 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=33.1
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-------CCcEEEEEecCHHHH
Q psy5634 18 ALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-------GNKTVIITTHYIEEA 68 (79)
Q Consensus 18 al~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-------~g~tvi~~tH~~~~~ 68 (79)
+++.+|.+.+||||++++|..+.+.+.+.+.+..++ ...-.|++-++++.+
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~~~D~iivnd~le~a 177 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKA 177 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTCSEEEECSSHHHH
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCceEEEECCCHHHH
Confidence 566677777788889999988777787777665332 123345555565543
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.94 E-value=0.78 Score=31.85 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=35.7
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-H---------------HHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 11 RRVSFAVALM--HDPELLILDEPTVGVD-P---------------LLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 11 qrv~laral~--~~p~~lllDEP~~glD-~---------------~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
+.+.+++.++ .+|+++++|+-++-.. . ....+++..|..++++.+.+||++.|-
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 3445566554 4699999998655443 1 122334555667777779999999886
No 164
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.62 E-value=2.6e-05 Score=52.07 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHHH---------HHHHHHHHHHhcCCcEEEEEec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPEL--LILDEPTVGVDPLLRQ---------SIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~--lllDEP~~glD~~~~~---------~i~~~l~~~~~~~g~tvi~~tH 63 (79)
.+|+| ||+++++++..+|++ +|+||.|+.+|...+. ...+.+.. ..+ |.|.+.+.|
T Consensus 172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~-~~~-g~t~~~~a~ 238 (261)
T 2eyu_A 172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKL-YKQ-GLITLEDAM 238 (261)
T ss_dssp CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHH-HHT-TSSCHHHHH
T ss_pred ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHH-HHc-CCCCHHHHH
Confidence 36788 899999999999999 9999999999876321 23333333 343 666655544
No 165
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.34 E-value=0.00027 Score=44.89 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHH-HHHhcCCCEEEEeCCC
Q psy5634 4 SSRGGQQRRVSFA-VALMHDPELLILDEPT 32 (79)
Q Consensus 4 ~lS~G~kqrv~la-ral~~~p~~lllDEP~ 32 (79)
.+|+|++|+++++ ++++.++.++++|||.
T Consensus 111 ~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 111 DIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred cCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 5688999999887 7888888888888874
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.23 E-value=0.023 Score=41.62 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
+.+|+|++|++..++....++.++++||... |++..+..+.+.|.+
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 4578888999888888999999999999987 899999999888875
No 167
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.04 E-value=0.53 Score=31.18 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=30.6
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 20 MHDPELLILDEPTV-GVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~~-glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..+|+++++||+-. .-+....+.++..+...... |..+|+++++
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~~ 140 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDR 140 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 35699999999854 23446777888888776544 5566776653
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.90 E-value=0.012 Score=39.95 Aligned_cols=47 Identities=6% Similarity=-0.093 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
+..||+|++||+.++ .+||+...+.+.+++.+.++..+ ++|+.+.+.
T Consensus 160 ~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~ 206 (334)
T 1in4_A 160 SGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAE 206 (334)
T ss_dssp GGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHH
T ss_pred cccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHH
Confidence 357999999998544 67777788888888888765544 356665443
No 169
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.41 E-value=0.0011 Score=44.12 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTV------------GVDPLLRQSIWNHL 47 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~------------glD~~~~~~i~~~l 47 (79)
.|||||+|++.+++|+.++|+++ |||+. --|...+.++++.+
T Consensus 137 ~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 137 EMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 58999999999999999999985 99864 23666666666544
No 170
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.08 E-value=0.14 Score=34.06 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=25.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 22 DPELLILDEPTVGVD---PLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 22 ~p~~lllDEP~~glD---~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.|.++++||+....+ ......+.+.+... ...+.++|++||+.+.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFIGITNDVKF 175 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEEEEESCGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEEEEECCCCh
Confidence 388999999976542 22222333322211 2346889999998754
No 171
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.47 E-value=0.36 Score=29.46 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+|.++++||.-. +++.....+.+.+.+. ..+..+|++|++..
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 478999999755 7887777777666532 23678888888754
No 172
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.47 E-value=0.22 Score=30.70 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=24.9
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhcCCcEEEEEec-CHHHH
Q psy5634 20 MHDPELLILDEPTV-GVDPLLRQSIW-NHLVQITKDGNKTVIITTH-YIEEA 68 (79)
Q Consensus 20 ~~~p~~lllDEP~~-glD~~~~~~i~-~~l~~~~~~~g~tvi~~tH-~~~~~ 68 (79)
+.+++++++||+-. .+++.....++ .++...... +..+|++|+ .++..
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~-~~~~i~tsn~~~~~l 163 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFE-NLPTFFTSNFDMQQL 163 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHT-TCCEEEEESSCHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhC-CCCEEEEcCCCHHHH
Confidence 35678999999932 23333344344 355443333 445566555 55444
No 173
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=90.42 E-value=0.28 Score=33.38 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
+.++.++++..+++..+.+|+++|+.-..+..|... .....++..+...+..+++++|.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 356778899999999999999888874444445433 34455666654333357777765
No 174
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.41 E-value=0.79 Score=32.16 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=34.4
Q ss_pred HHHHHh--cCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 15 FAVALM--HDPELLILDEPTVGVDP----------LLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 15 laral~--~~p~~lllDEP~~glD~----------~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
.++.+. .+|+++++|....-... .....+...|+.++++.+.+||+++|-
T Consensus 301 ~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 301 RARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp HHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred HHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 344444 47999999987543321 223456777788888789999999983
No 175
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.40 E-value=4.3e-05 Score=53.32 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHH---H-----HHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 5 SRGGQQRRVSFAVALMHDPEL--LILDEPTVGVDPLL---R-----QSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~--lllDEP~~glD~~~---~-----~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
+|+| ||+++++++..+|.+ +|+||.|+.+|... . +.+.+...+... .|.|.+.+.|..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~-~g~t~~~~a~r~ 351 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK-QGLITLEDAMEA 351 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTT-TSSSCTTTTTSS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH-CCCCCHHHHHHH
Confidence 4778 889999999999999 99999999988641 1 122333333333 377777666654
No 176
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.09 E-value=0.37 Score=33.03 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=36.9
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 22 DPELLILDEPTVGVD---PLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 22 ~p~~lllDEP~~glD---~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
.|.++++||--.-++ +.....+.+.+++. ++.|..++++||++..+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~-Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI-RKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHG-GGGTCEEEEEESCGGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHh-hhhCeEEEEEcCCHHHhh
Confidence 588999999977663 66677777777665 566899999999997654
No 177
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.90 E-value=1.8 Score=30.01 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=33.5
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-----H--------HHHHHHHHH---HHHHHhcCCcEEEEEecCHH
Q psy5634 11 RRVSFAVALM--HDPELLILDEPTVGVD-----P--------LLRQSIWNH---LVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 11 qrv~laral~--~~p~~lllDEP~~glD-----~--------~~~~~i~~~---l~~~~~~~g~tvi~~tH~~~ 66 (79)
+.+.+++.++ .+++++++|..++=.. - ...+.+.+. |..++++.+.+||+++|-..
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~ 212 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE 212 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 3445566665 4699999999875431 0 111223344 44445677899999988643
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.76 E-value=0.41 Score=29.62 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=28.0
Q ss_pred cCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 21 HDPELLILDEPTVGV-DPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 21 ~~p~~lllDEP~~gl-D~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
.+|.++++||.-.-- +......+...+..........+|++++.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 568999999964432 23336677787777654422337777763
No 179
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.47 E-value=0.51 Score=31.18 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
++.++++|| ...+++.....+.+.+.+.. ....+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchh
Confidence 456999999 78899988888888877653 2456777776654
No 180
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.34 E-value=0.25 Score=32.56 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHHhcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 17 VALMHDPELLILDEPTVG-VDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 17 ral~~~p~~lllDEP~~g-lD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
.++..+|+++|+|||-.- .+.......++.+..... .|..++.++|
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N 125 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN 125 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence 345578999999997642 332222334444444433 4778888887
No 181
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=88.11 E-value=0.0046 Score=44.58 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=34.8
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 17 VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 17 ral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
|||..+ +++|+ ||++.+||. +..+. .++.+..+.++.+++|+++.+
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~---~eLt~~~~~~iP~vsa~md~~ 73 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLT---SALTRKITLKTPLISSPMDTV 73 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCC---EESSSSCEESSCEEECCCTTT
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEE---eeccCCeeEeceEEEEehhhh
Confidence 789999 99999 999999994 33332 234445577889999988765
No 182
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.30 E-value=0.24 Score=33.28 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecC
Q psy5634 20 MHDPELLILDEPT-VGVDPLLRQSIWN-HLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~-~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~ 64 (79)
+.++++|++||.- ..+++.....++. ++.....+ +..+|++|+.
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~-~~~~IitSN~ 257 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLE-ELPTFFTSNY 257 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHH-TCCEEEEESS
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHC-CCcEEEECCC
Confidence 4578999999983 3344444444544 55443233 4567777763
No 183
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.13 E-value=0.66 Score=30.89 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=32.5
Q ss_pred HHHHHh---cCCCEEEEeCCCCCCC--------HH----HHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 15 FAVALM---HDPELLILDEPTVGVD--------PL----LRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 15 laral~---~~p~~lllDEP~~glD--------~~----~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
.++.++ .+++++++|..++-.. .. ...++...|..++++.+.+||++.|-
T Consensus 194 ~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~ 258 (322)
T 2i1q_A 194 KIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV 258 (322)
T ss_dssp THHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred HHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce
Confidence 344444 4689999998764321 11 12445566677777778999998874
No 184
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.63 E-value=1.8 Score=28.55 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 13 VSFAVALMHDPELLILDEPTV-------------GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 13 v~laral~~~p~~lllDEP~~-------------glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
-.+..+....|.++++||.-+ +........++..+.......+..||.+|+..+.
T Consensus 99 ~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 99 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred HHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 344555567899999999632 2333334555555543323346778888887754
No 185
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.39 E-value=1.1 Score=28.92 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---hcCCcEEEEEecCHHH
Q psy5634 13 VSFAVALMHDPELLILDEPTV----------GVDPLLRQSIWNHLVQIT---KDGNKTVIITTHYIEE 67 (79)
Q Consensus 13 v~laral~~~p~~lllDEP~~----------glD~~~~~~i~~~l~~~~---~~~g~tvi~~tH~~~~ 67 (79)
-.+..+...+|.++++||.-. +-+......+...+..+. ...+..+|.+|+..+.
T Consensus 101 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 101 DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 344556667889999999732 135556666777666542 2235667778876543
No 186
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.35 E-value=0.0085 Score=42.53 Aligned_cols=23 Identities=22% Similarity=0.053 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEE
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLI 27 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~ll 27 (79)
.+|||||+|| |+|+++.+|++..
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccC
Confidence 3699999999 9999999999876
No 187
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=84.20 E-value=5.6 Score=28.11 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=34.8
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 12 RVSFAVALM--HDPELLILDEPTV---G---VDP-LLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 12 rv~laral~--~~p~~lllDEP~~---g---lD~-~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+..++.+. .+|+++++|--.. + -+. ....++...|+.++++.+.+||+++|-.
T Consensus 342 i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 333444443 4699999994432 1 121 3334567777888888899999999954
No 188
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=83.76 E-value=0.95 Score=30.14 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhcCCc--EEEEEecCHHH
Q psy5634 5 SRGGQQRRVSFAVALM--HDPELLILDEPTVGVDPLL-RQSIWNHLVQITKDGNK--TVIITTHYIEE 67 (79)
Q Consensus 5 lS~G~kqrv~laral~--~~p~~lllDEP~~glD~~~-~~~i~~~l~~~~~~~g~--tvi~~tH~~~~ 67 (79)
+|+|++ .+++.+. ..|.++++ +.+|... +..+.+.+.++.+..|. .+.+++|+..-
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 788876 4455555 67889998 7888776 56677777777654443 55566665443
No 189
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.69 E-value=2.5 Score=25.33 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=30.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
.++.++++||. ..+++.....+...+.+. ..+..+|++|....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 56889999995 556777777777776653 23566777777653
No 190
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.55 E-value=5 Score=28.01 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
.||..+.+++.-+...+.+.++++.|+|.. +. .++...++++.++.|..+|++-+
T Consensus 264 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 264 QLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 478888888888777777888999888743 33 23444455554445677777754
No 191
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=82.38 E-value=0.87 Score=33.26 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=30.7
Q ss_pred HHHHHHHHHHh-cCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 10 QRRVSFAVALM-HDP-ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 10 kqrv~laral~-~~p-~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
+|++.+++++. ..| .++|...|++|.|.. +.++.+.+..+.|.+++||
T Consensus 398 ~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 398 KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 56777777663 446 455555688886544 2233444445789999999
No 192
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=82.01 E-value=1.8 Score=25.72 Aligned_cols=52 Identities=27% Similarity=0.115 Sum_probs=34.4
Q ss_pred HHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 16 AVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 16 aral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
.+|+-.+. -+++.|+-+..-|+..+..+.+ |.+.+++.|..|.++|.+...-
T Consensus 47 ~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G 100 (124)
T 1x52_A 47 EKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSG 100 (124)
T ss_dssp HHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHH
T ss_pred HHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccH
Confidence 44555454 4566666655557878888888 5565566688888888765443
No 193
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.93 E-value=8.1 Score=26.81 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHH--h--cCCCEEEEeCCCCCCC-----H----------HHHHHHHHH---HHHHHhcCCcEEEEEecCH
Q psy5634 8 GQQRRVSFAVAL--M--HDPELLILDEPTVGVD-----P----------LLRQSIWNH---LVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 8 G~kqrv~laral--~--~~p~~lllDEP~~glD-----~----------~~~~~i~~~---l~~~~~~~g~tvi~~tH~~ 65 (79)
+++..+.++..+ + .+|++++.|.-++=.. - ...+.+-+. |..++++.+.++|++-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 444446666665 3 3699999997655431 0 112233333 3445677799999999986
Q ss_pred H
Q psy5634 66 E 66 (79)
Q Consensus 66 ~ 66 (79)
.
T Consensus 173 k 173 (333)
T 3io5_A 173 E 173 (333)
T ss_dssp -
T ss_pred e
Confidence 5
No 194
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=81.15 E-value=2.6 Score=27.27 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=26.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
+|+++++||--. +++. +.+.+..+.+. |..||++.|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~-gi~Vil~Gl~ 125 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAEN-GFVVIISGLD 125 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEECCS
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhC-CCeEEEEecc
Confidence 489999999953 5543 33444555444 8999999993
No 195
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=80.62 E-value=6.1 Score=22.65 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=39.4
Q ss_pred HhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 19 LMHDPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 19 l~~~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
+..+|+.+++| .....+|......+.+..+++. +.|..++++.-+...
T Consensus 45 ~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~~v 93 (130)
T 4dgh_A 45 IQETPQILILRLKWVPFMDITGIQTLEEMIQSFH-KRGIKVLISGANSRV 93 (130)
T ss_dssp SSSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHH-TTTCEEEEECCCHHH
T ss_pred hccCCCEEEEECCCCCcccHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHH
Confidence 34678999999 8999999999999998888774 558888888766544
No 196
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=79.95 E-value=0.49 Score=32.94 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy5634 2 EISSRGGQQRRVSFAVAL 19 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral 19 (79)
+.+|| ||+||+++|+++
T Consensus 312 ~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 312 HDADP-GCAIREAVENGA 328 (358)
T ss_dssp SSSCT-TCHHHHHHHHTS
T ss_pred cccCC-HHHHHHHHHhcC
Confidence 46899 999999999875
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.88 E-value=6.9 Score=26.41 Aligned_cols=55 Identities=27% Similarity=0.310 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCEEEEeCC-------CCCCCHHHHHHHHHHHHHHH---h--cCCcEEEEEecCHH
Q psy5634 12 RVSFAVALMHDPELLILDEP-------TVGVDPLLRQSIWNHLVQIT---K--DGNKTVIITTHYIE 66 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP-------~~glD~~~~~~i~~~l~~~~---~--~~g~tvi~~tH~~~ 66 (79)
+..+..+-..+|.++++||. ..+.+......+..++..+. . ..+..+|.+|+..+
T Consensus 166 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred HHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 34455555678999999997 23333333333333333321 1 22456666787654
No 198
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=79.09 E-value=6.4 Score=22.37 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=38.2
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 21 HDPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 21 ~~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
.+|+.+++| .....+|......+.+..+++ ++ |..++++.-+....
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~-~~-g~~l~l~~~~~~v~ 90 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRL-PE-GCELRVCNVEFQPL 90 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHC-CT-TCEEEEECCCHHHH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHH-HC-CCEEEEecCCHHHH
Confidence 678999999 889999999999998888776 56 88888887766543
No 199
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=78.92 E-value=3.9 Score=27.87 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=27.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
.+|++++|-|..|++....+. + +. +..++++|.+....
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~~~----l----~~-~g~ivyvsc~p~t~ 332 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETEKM----V----QA-YPRILYISCNPETL 332 (369)
T ss_dssp CEEEEEECCCTTCCCHHHHHH----H----TT-SSEEEEEESCHHHH
T ss_pred CCCEEEECcCccccHHHHHHH----H----hC-CCEEEEEECCHHHH
Confidence 579999999999998654332 2 22 56789999987654
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=78.92 E-value=4 Score=29.01 Aligned_cols=50 Identities=12% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 14 SFAVALMHDPELLILDEPT-VG--VDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~-~g--lD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
++..+...+++++|+|+|- .+ .|+....++..+.... +.....+++.++.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-KPDDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-CCSEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh-CCcceEEEEeCcc
Confidence 4555556799999999997 44 7888888877755544 3334445555543
No 201
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=78.68 E-value=2.6 Score=27.95 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
++.++++||. ..++....+.+.+.+.+. ..+..+|++|++..
T Consensus 119 ~~~vliiDe~-~~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEV-HMLSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECG-GGSCHHHHHHHHHHHHSC--CSSEEEEEEESCGG
T ss_pred CeEEEEEECc-chhcHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 5689999995 457777777777766543 23567777887654
No 202
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=78.53 E-value=4.9 Score=26.79 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=32.8
Q ss_pred HHHHHh--cCCC--EEEEeCCCC----C--CCH-HHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 15 FAVALM--HDPE--LLILDEPTV----G--VDP-LLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 15 laral~--~~p~--~lllDEP~~----g--lD~-~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
.++.+. .+++ ++++|--.. + -+. .....+...|+.++++.|.+||+++|-
T Consensus 170 ~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql 230 (315)
T 3bh0_A 170 KTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 230 (315)
T ss_dssp HHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 344443 3678 999994321 1 121 334566777888888889999999994
No 203
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=78.18 E-value=0.63 Score=32.13 Aligned_cols=44 Identities=9% Similarity=0.143 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHH----HHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy5634 5 SRGGQQRRVSFA----VAL-MHDPELLILDEPTVGVDPLLRQSIWNHLVQITK 52 (79)
Q Consensus 5 lS~G~kqrv~la----ral-~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~ 52 (79)
+|+|+++++.++ +.+ ..+|++ +|+|++|....+.+++.+.+...
T Consensus 305 ~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 305 INGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp CCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 566777777776 555 334444 79999999999999888887654
No 204
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=77.02 E-value=5.6 Score=25.02 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=30.0
Q ss_pred HHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEE-EecCHHH
Q psy5634 17 VALMHDPELLILDEPTV-GVDPLLRQSIWNHLVQITKDGNKTVII-TTHYIEE 67 (79)
Q Consensus 17 ral~~~p~~lllDEP~~-glD~~~~~~i~~~l~~~~~~~g~tvi~-~tH~~~~ 67 (79)
...+.+.+++++||.-. ++|........+.+.....+ -.++++ +|.+.+.
T Consensus 171 ~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~SAT~~~~~ 222 (235)
T 3llm_A 171 EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMSATIDTSM 222 (235)
T ss_dssp HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCHH
T ss_pred HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEecCCCHHH
Confidence 34578999999999976 68777664444444443222 234444 4554443
No 205
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=76.75 E-value=9.6 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEecC
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK-DGNKTVIITTHY 64 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~-~~g~tvi~~tH~ 64 (79)
.+++..+|+.+|+++++=|- ..| .+.+.+.+++..+ ..+.++|+++--
T Consensus 175 ~lAl~a~lA~ga~~iliPE~--~~~---~~~i~~~i~~~~~~gk~~~iIvvaEG 223 (319)
T 1zxx_A 175 DIAMRVGVACGADAIVIPER--PYD---VEEIANRLKQAQESGKDHGLVVVAEG 223 (319)
T ss_dssp HHHHHHHHHTTCSEEECTTS--CCC---HHHHHHHHHHHHHTTCCCEEEEEETT
T ss_pred HHHHHHHHhcCCCEEEeCCC--CCC---HHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 47889999999999999553 223 2456666666543 346678777753
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.94 E-value=5.2 Score=25.83 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=26.8
Q ss_pred HHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy5634 14 SFAVALMHDP-ELLILDEPTVGVDPLLRQSIWNHLVQI 50 (79)
Q Consensus 14 ~laral~~~p-~~lllDEP~~glD~~~~~~i~~~l~~~ 50 (79)
.+..++...| .++++||. ..+++.....+++.+.+.
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 3445555555 79999998 678888888888887753
No 207
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=75.90 E-value=10 Score=25.98 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEecC
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT-KDGNKTVIITTHY 64 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~-~~~g~tvi~~tH~ 64 (79)
.+++..+|+.+|+++++=|-- .| .+.+.+.+++.. +..+.++|+++--
T Consensus 176 ~lAl~a~lA~ga~~iliPE~~--~~---~~~i~~~i~~~~~~gk~~~iIvvaEG 224 (320)
T 1pfk_A 176 DLTLAAAIAGGCEFVVVPEVE--FS---REDLVNEIKAGIAKGKKHAIVAITEH 224 (320)
T ss_dssp HHHHHHHHHTTCSEEECTTSC--CC---HHHHHHHHHHHHHTTCSCEEEEEESS
T ss_pred HHHHHHHHhcCCCEEEeCCCC--CC---HHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 578899999999999995532 23 245566666544 2345677777653
No 208
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=75.50 E-value=3.1 Score=31.62 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC----------HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVD----------PLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD----------~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
+..+..+....|.++++||+-+.+. ......+...+.......+..+|.+||+.+.+
T Consensus 287 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 4445566677899999999844332 22223333333332223356888888886543
No 209
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=75.47 E-value=9.5 Score=22.04 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=38.2
Q ss_pred hcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 20 MHDPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 20 ~~~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
..+++.+++| .....+|......+.+..+++.+ .|..++++.-+...
T Consensus 49 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~v 96 (135)
T 4dgf_A 49 EETPKVFILRMRRVPVIDATGMHALWEFQESCEK-RGTILLLSGVSDRL 96 (135)
T ss_dssp SSCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHH-HTCEEEEESCCHHH
T ss_pred cCCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHH
Confidence 3678999999 88999999999999998887754 47788888766544
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=75.29 E-value=4.7 Score=28.91 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 14 SFAVALMHDPELLILDEPT----------VGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~----------~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.+..|--..|.+|++||-- ..+.......++..+.......+..||.+|+..+.
T Consensus 289 ~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred HHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 4555666778999999961 22233444555555554433335666677776643
No 211
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=75.08 E-value=5 Score=22.20 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=35.8
Q ss_pred hcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 20 MHDPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 20 ~~~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..+|+.+++| .....+|......+.+..+++. +.|..+.++.-+
T Consensus 41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~ 85 (99)
T 3oiz_A 41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFR-REGAEVRIVGMN 85 (99)
T ss_dssp TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHH-HTTCEEEEESHH
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHH-hCCCEEEEEcCC
Confidence 3578999999 8899999999999999888775 457788877633
No 212
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=73.93 E-value=5.2 Score=26.57 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=31.3
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 17 VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 17 ral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..+..+.+++++||+-..+.....+.+.+.+.+.. .+..+|+++.+
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~--~~~~~il~~~~ 116 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH--DDLLLIVRGNK 116 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB--TTEEEEEEESC
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 45667889999999977677667777766665432 25556656654
No 213
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=73.48 E-value=11 Score=21.82 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=28.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
+..++++||. ..+++..+..+++.+.+.. ..+..+|.+|+
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~-~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAE-RCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHT-TTTCEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCC-CCCEEEEEecC
Confidence 4689999996 5678888888888777642 23456666665
No 214
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=73.25 E-value=6 Score=27.92 Aligned_cols=54 Identities=13% Similarity=0.261 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEec
Q psy5634 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKT--VIITTH 63 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~t--vi~~tH 63 (79)
|+..+.+++.-+...+.+.++++.|+|. +++.. +...++++.++.|.. +|++-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~---i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNY---IWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHH---HHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH---HHHHHHHHHHHhCCCCeEEEEec
Confidence 6667777887777777788899988874 54443 344445554444666 777754
No 215
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=72.40 E-value=14 Score=25.47 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=27.2
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCH-----------HHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 15 FAVALMHDPELLILDEPTVGVDP-----------LLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 15 laral~~~p~~lllDEP~~glD~-----------~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
+...+...+ ++++||-.+=-.. ....+++..|....++.|.++|++++
T Consensus 176 i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 176 IARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp HHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 444444444 9999996543221 11233444444455556889999887
No 216
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=72.39 E-value=9 Score=28.41 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=32.0
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
-..++-++++| |+.|+++..... ++.+. ..+..+|++.|.++..
T Consensus 96 ~~ad~~ilVvD-~~~g~~~qt~~~-~~~~~----~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 96 EAADAALVAVS-AEAGVQVGTERA-WTVAE----RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHCSEEEEEEE-TTTCSCHHHHHH-HHHHH----HTTCCEEEEEECGGGC
T ss_pred hhcCcEEEEEc-CCcccchhHHHH-HHHHH----HccCCEEEEecCCchh
Confidence 35678899999 999999887633 33332 2378889999988754
No 217
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=72.18 E-value=7.2 Score=25.48 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=29.6
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 22 DPELLILDEPTVGVD-PLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 22 ~p~~lllDEP~~glD-~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+++++++||.- .+. ......+...+.+.. .+..+|++|+...
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~--~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS--SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG--GGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC--CCcEEEEEeCCcc
Confidence 68999999984 344 666677777776653 2467888887654
No 218
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=71.95 E-value=12 Score=21.64 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=37.4
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 21 HDPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 21 ~~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.+++.+++| .....+|......+..+.+++. +.|..+.++.-+...
T Consensus 62 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~~v 108 (143)
T 3llo_A 62 ENIHTVILDFTQVNFMDSVGVKTLAGIVKEYG-DVGIYVYLAGCSAQV 108 (143)
T ss_dssp -CCSEEEEECTTCCCCCHHHHHHHHHHHHHHH-TTTCEEEEESCCHHH
T ss_pred CCceEEEEECCCCccccHHHHHHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence 368899999 8899999999999999888774 557888888766554
No 219
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=71.93 E-value=18 Score=23.59 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=40.4
Q ss_pred HHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 15 FAVALMHDPELLILDEPTVG-------VDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 15 laral~~~p~~lllDEP~~g-------lD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
+.+++..+.+++.|-|+... ++.....++...+.+++++.|.. +++..+.+.+..
T Consensus 49 ~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~-liInd~~~lA~~ 110 (243)
T 3o63_A 49 AEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGAL-FAVNDRADIARA 110 (243)
T ss_dssp HHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCE-EEEESCHHHHHH
T ss_pred HHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCE-EEEeCHHHHHHH
Confidence 34567788999999999865 88888888888888888776655 444455555543
No 220
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=71.93 E-value=8.1 Score=25.43 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=26.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+.+++++||--.-.+ ..++.+.+. +.|..||++.++.
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~----~~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMA----NAGKTVIVAALDG 126 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHH----HTTCEEEEECCSB
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHH----hCCCEEEEEeccc
Confidence 6789999999966544 333333333 3589999999993
No 221
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=71.64 E-value=8.2 Score=24.83 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=29.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
.++.++++||. ..+++.....+.+.+.+. ..+..+|+++.+..
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~--~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMF--SSNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhc--CCCCeEEEEeCCcc
Confidence 46889999996 456777777777776653 23566777776643
No 222
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.08 E-value=18 Score=30.22 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=32.6
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHH---HHhcCCcEEEEEecC
Q psy5634 12 RVSFAVALM--HDPELLILDEPTVGVD-P------------LLRQSIWNHLVQ---ITKDGNKTVIITTHY 64 (79)
Q Consensus 12 rv~laral~--~~p~~lllDEP~~glD-~------------~~~~~i~~~l~~---~~~~~g~tvi~~tH~ 64 (79)
....++.++ .+|+++++|+..+-.. . ...+++.+.+.+ ++++.|.+||+++|-
T Consensus 798 i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 334444333 5799999999876552 1 112334444444 466678999999883
No 223
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.91 E-value=6.3 Score=25.33 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
++.++++||. ..++....+.+.+.+.+. ..+..+|++|.+..
T Consensus 107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~--~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEA-DSMTAGAQQALRRTMELY--SNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHT--TTTEEEEEEESCGG
T ss_pred CceEEEEECc-ccCCHHHHHHHHHHHhcc--CCCceEEEEeCChh
Confidence 4889999995 446666667777766653 23567778887653
No 224
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=68.62 E-value=12 Score=20.30 Aligned_cols=42 Identities=5% Similarity=0.128 Sum_probs=25.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
-.+|+++|+|-...+.|- ..+.+.+++.....+..+|++|..
T Consensus 45 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 45 TRGYDAVFIDLNLPDTSG---LALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HSCCSEEEEESBCSSSBH---HHHHHHHHHSCCSSCCEEEEEECC
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhhhccCCCCEEEEECC
Confidence 367999999988777763 334454554311234556665543
No 225
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=68.51 E-value=19 Score=22.44 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHHHh---cCCcEEEEEecCHH
Q psy5634 14 SFAVALMHDPELLILDEPTVGV-----------DPLLRQSIWNHLVQITK---DGNKTVIITTHYIE 66 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~~gl-----------D~~~~~~i~~~l~~~~~---~~g~tvi~~tH~~~ 66 (79)
.+..+....|.++++||.-.-. +......+..++..+.. ..+..+|.+|+...
T Consensus 90 ~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 156 (262)
T ss_dssp HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh
Confidence 3444555679999999985421 23333444455544321 22456666776654
No 226
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=67.53 E-value=0.018 Score=37.75 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEP 31 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP 31 (79)
.||||++|++.+++|+..+|++ +|++
T Consensus 169 ~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 169 EMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp HHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred HHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 4789999999999999999987 5755
No 227
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=67.27 E-value=0.87 Score=26.85 Aligned_cols=45 Identities=20% Similarity=0.062 Sum_probs=24.2
Q ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 22 DPELLILDEPTVGV----DPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 22 ~p~~lllDEP~~gl----D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+|.++++||--.-. +......+.+.+.....+.+..+|.+++...
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 163 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE 163 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH
T ss_pred CceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 57899999952211 0111123444455544444567777776544
No 228
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=66.96 E-value=14 Score=25.28 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=36.5
Q ss_pred HHHHHHh--c-CCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 14 SFAVALM--H-DPELLILDEPTVGVDPL-------LRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 14 ~laral~--~-~p~~lllDEP~~glD~~-------~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
+.++.+. . ++++++.|--..=-.+. ...++...|+.++++.+.+||+++|--..+
T Consensus 145 ~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~ 209 (338)
T 4a1f_A 145 LQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSL 209 (338)
T ss_dssp HHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence 4444443 2 68999999543322221 245677778888888899999999965443
No 229
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=65.96 E-value=8.8 Score=24.49 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHHHHhcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHh----cC-CcEEEEEecCHHHH
Q psy5634 15 FAVALMHDPELLILDEPTV-----GVDPLLRQSIWNHLVQITK----DG-NKTVIITTHYIEEA 68 (79)
Q Consensus 15 laral~~~p~~lllDEP~~-----glD~~~~~~i~~~l~~~~~----~~-g~tvi~~tH~~~~~ 68 (79)
+..+...++.++++||.-. ..++.....+.+.|.+... .. +..+|.+|+..+..
T Consensus 117 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp HHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred HHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc
Confidence 4444556799999999411 1122223444555555432 11 23355667666543
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=65.55 E-value=0.016 Score=37.31 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPT 32 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~ 32 (79)
.||||++|++.+++|+..+|++ +|++.
T Consensus 145 ~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 145 EMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp HHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred HHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 4688899999999999999987 67764
No 231
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.07 E-value=36 Score=28.53 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=32.3
Q ss_pred HHHHHHHh--cCCCEEEEeCCCCCCCHH-------------HHHHHHHH---HHHHHhcCCcEEEEEecC
Q psy5634 13 VSFAVALM--HDPELLILDEPTVGVDPL-------------LRQSIWNH---LVQITKDGNKTVIITTHY 64 (79)
Q Consensus 13 v~laral~--~~p~~lllDEP~~glD~~-------------~~~~i~~~---l~~~~~~~g~tvi~~tH~ 64 (79)
+.+++.++ .+|+++++|..++=.... ..+.+.+. |..++++.|.+||+++|-
T Consensus 450 l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl 519 (1706)
T 3cmw_A 450 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 519 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 34445443 579999999987765411 11223333 444456678999999885
No 232
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=64.86 E-value=15 Score=22.62 Aligned_cols=46 Identities=17% Similarity=0.082 Sum_probs=33.1
Q ss_pred hcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 20 MHDPELLILDEPTV----GVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 20 ~~~p~~lllDEP~~----glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
..+|+++++|.-+. .-+.....++...|..++++.|.++++++|-.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 45799999995421 12444556677778888888899999999854
No 233
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=64.74 E-value=15 Score=20.01 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=24.4
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
--.+|+++|+|--..+.|- ..+.+.+++.....+..||++|.
T Consensus 44 ~~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 44 LAHPPDVLISDVNMDGMDG---YALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HHSCCSEEEECSSCSSSCH---HHHHHHHHHSTTTTTCCEEEEES
T ss_pred hcCCCCEEEEeCCCCCCCH---HHHHHHHHhCCccCCCCEEEEeC
Confidence 3468999999987777663 33444455431112344555554
No 234
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=64.49 E-value=27 Score=23.18 Aligned_cols=48 Identities=10% Similarity=0.236 Sum_probs=36.3
Q ss_pred CCCEEEEeCCCC--------------CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 22 DPELLILDEPTV--------------GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 22 ~p~~lllDEP~~--------------glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
+-+++.+|-|.. +.+.....++.+.+.++. +.|.-++++-++.+++..
T Consensus 187 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~-~~g~~~~lS~~d~~~i~~ 248 (284)
T 2dpm_A 187 TGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLS-DTGAYVMLSNSSSALVEE 248 (284)
T ss_dssp TTCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHH-TTTCEEEEEEESCHHHHH
T ss_pred CCCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHH-hcCCEEEEEcCCCHHHHH
Confidence 447899999863 356677788999998875 446789999998877754
No 235
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=64.24 E-value=15 Score=19.95 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=23.9
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
--.+|+++++|=-..+.|- -.+.+.+++.....+..+|++|-
T Consensus 43 ~~~~~dlvllD~~~p~~~g---~~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 43 SEFTPDLIVLXIMMPVMDG---FTVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp TTBCCSEEEECSCCSSSCH---HHHHHHHHTSTTTTTSCEEEEES
T ss_pred HhcCCCEEEEeccCCCCcH---HHHHHHHHhcccccCCCEEEEec
Confidence 3468999999977777773 23444444321112344555553
No 236
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=64.02 E-value=18 Score=20.60 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=38.6
Q ss_pred HHHHHhc---CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 15 FAVALMH---DPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 15 laral~~---~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+...+.. +++.+++| .-...+|......+.++.++.. +.|..++++.-...
T Consensus 37 l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~~ 91 (130)
T 2kln_A 37 ALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELL-RRGIVFAMARVKQD 91 (130)
T ss_dssp HHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHH-TTTEEEEEECCSSH
T ss_pred HHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence 3444444 57899999 8899999999999988888764 55888888776544
No 237
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=63.83 E-value=16 Score=20.11 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=27.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
-.+|+++|+|--..+.|- ..+.+.+++.....+..+|++|-..+
T Consensus 48 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 48 RRPYAAMTVDLNLPDQDG---VSLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp HSCCSEEEECSCCSSSCH---HHHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhCcccCCCCEEEEecCCC
Confidence 467999999988777774 33444455421223566777766543
No 238
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.65 E-value=29 Score=24.40 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=30.5
Q ss_pred cCCC--EEEEeCCCC----C--CC-HHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 21 HDPE--LLILDEPTV----G--VD-PLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 21 ~~p~--~lllDEP~~----g--lD-~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
.+|+ ++++|--.. + -+ ......+...|+.++++.|.+||+++|-
T Consensus 307 ~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 307 NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 359 (444)
T ss_dssp SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 4789 999995421 1 11 2234456677888888889999999994
No 239
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=63.63 E-value=6.3 Score=26.32 Aligned_cols=43 Identities=7% Similarity=0.075 Sum_probs=29.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
.+.+++++||. -.+.....+.+.+.+.+. ..+..+|++|++.+
T Consensus 107 ~~~kvviIdea-d~l~~~a~naLLk~lEep--~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDA-ALLTDAAANALLKTLEEP--PAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCG-GGBCHHHHHHHHHHHTSC--CTTEEEEEEESCGG
T ss_pred CCcEEEEECch-hhcCHHHHHHHHHHhcCC--CCCeEEEEEeCChH
Confidence 35689999997 456667777776665543 12567788888864
No 240
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=63.60 E-value=18 Score=20.54 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
-.+|+++|+|--..+.|- ..+.+.+++.....+..||++|
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 49 LTRPDLIISDVLMPEMDG---YALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp TCCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTSCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCcCCCCEEEEE
Confidence 457999999988777773 3344445543211244455555
No 241
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=63.58 E-value=5.6 Score=24.48 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=25.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+++++++||--. +++. +.+.+..+.++ |..|+++.++.+
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccc
Confidence 578999999743 4433 34455555554 788998888543
No 242
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=63.55 E-value=5.8 Score=26.53 Aligned_cols=42 Identities=7% Similarity=0.121 Sum_probs=27.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+.+++|+||+- .+.....+.+.+.+.+.. ....+|++|++..
T Consensus 82 ~~kvviIdead-~lt~~a~naLLk~LEep~--~~t~fIl~t~~~~ 123 (305)
T 2gno_A 82 TRKYVIVHDCE-RMTQQAANAFLKALEEPP--EYAVIVLNTRRWH 123 (305)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCC--TTEEEEEEESCGG
T ss_pred CceEEEeccHH-HhCHHHHHHHHHHHhCCC--CCeEEEEEECChH
Confidence 34789999873 456666677766665432 2567777887764
No 243
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=63.37 E-value=18 Score=20.61 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=31.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
+.-+.-++||-=.+.|++.....+.++...+....+..|.++.|-
T Consensus 2 i~~~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ght 46 (118)
T 2hqs_H 2 LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHA 46 (118)
T ss_dssp --CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred ccccceeEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 455677888888889999888877666555544445678888883
No 244
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=63.03 E-value=15 Score=22.51 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=26.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 23 PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 23 p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
-..+|+| +|.++...+.+.+.+.++. ......|+.||.
T Consensus 35 ~~~iLiD---~G~~~~~~~~~~~~l~~~~-~~~i~~ii~TH~ 72 (233)
T 3q6v_A 35 DGITIIG---ATWTPETAETLYKEIRKVS-PLPINEVINTNY 72 (233)
T ss_dssp SCEEEES---CCSSHHHHHHHHHHHHHHC-CCCEEEEECSSS
T ss_pred CeEEEEE---CCCCHHHHHHHHHHHHHhc-CCCcEEEEECCC
Confidence 4577778 4666766777777777653 335777888884
No 245
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=62.73 E-value=0.28 Score=30.31 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH---Hhhccee
Q psy5634 6 RGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA---RQAHTVI 75 (79)
Q Consensus 6 S~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~---~~~d~i~ 75 (79)
+.|+.+|..++..+..+|+..... .+.++|.....+.+.+... .+.++|+.+|.+.+. ..+|.++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~~~d~vi 128 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTALCDRIL 128 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGGGCSEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHhhCCEEE
Confidence 467888888888877777543222 2345565555554444322 245788888876554 2355544
No 246
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.59 E-value=40 Score=23.90 Aligned_cols=57 Identities=25% Similarity=0.411 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHH---HhcCCcEEEEEecCHHH
Q psy5634 11 RRVSFAVALMHDPELLILDEPTV----------GVDPLLRQSIWNHLVQI---TKDGNKTVIITTHYIEE 67 (79)
Q Consensus 11 qrv~laral~~~p~~lllDEP~~----------glD~~~~~~i~~~l~~~---~~~~g~tvi~~tH~~~~ 67 (79)
-|-.+..|-...|.++++||--+ +-|......+..+|..+ ....+..||.+|+.++.
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 34556667778999999999743 22333444444555544 12235678889987654
No 247
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=61.38 E-value=30 Score=24.21 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
..|++++|-|.+|++....+.+ ..+ +. ..++++|.+.....
T Consensus 353 ~fD~Vv~dPPr~g~~~~~~~~l----~~l-~p--~givyvsc~p~tla 393 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRLVKRL----NRE-KP--GVIVYVSCNPETFA 393 (425)
T ss_dssp TCSEEEECCCTTCSCHHHHHHH----HHH-CC--SEEEEEESCHHHHH
T ss_pred CCCEEEEcCCccchHHHHHHHH----Hhc-CC--CcEEEEECChHHHH
Confidence 5799999999999987544443 333 32 35888898887654
No 248
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=60.86 E-value=10 Score=22.25 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=28.7
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 18 ALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 18 al~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
.|..+.+++++.+|...+.....+.+.+.+.+.. ..|++++.|
T Consensus 72 slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~---~~~~lvi~~ 114 (140)
T 1jql_B 72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH---DDLLLIVRG 114 (140)
T ss_dssp CTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCC---SSCCEEEEC
T ss_pred CCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCC---CCEEEEEEe
Confidence 4567889999999987776666666766665442 234555544
No 249
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=60.84 E-value=17 Score=19.41 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++++|-...+.|-. .+.+.+++........+|++|.
T Consensus 43 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 43 ENKPDLILMDIQLPEISGL---EVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HHCCSEEEEESBCSSSBHH---HHHHHHHHSTTTTTSCEEEEC-
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHcCccccCCcEEEEEC
Confidence 3579999999877777632 3445555421112344555543
No 250
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=60.29 E-value=18 Score=19.51 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=22.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EecC
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII-TTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~-~tH~ 64 (79)
-.+|+++++|=-..+.|- .++.+.+++. .+..+|+ +++.
T Consensus 44 ~~~~dlii~D~~~p~~~g---~~~~~~lr~~---~~~~ii~~t~~~ 83 (120)
T 3f6p_A 44 ELQPDLILLDIMLPNKDG---VEVCREVRKK---YDMPIIMLTAKD 83 (120)
T ss_dssp TTCCSEEEEETTSTTTHH---HHHHHHHHTT---CCSCEEEEEESS
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhc---CCCCEEEEECCC
Confidence 467999999987766652 3344444432 2344444 4443
No 251
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=59.88 E-value=19 Score=19.54 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=24.3
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
--.+|+++|+|-...+.|- ..+.+.+++........|++++.
T Consensus 47 ~~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 47 STFEPAIMTLDLSMPKLDG---LDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HHTCCSEEEEESCBTTBCH---HHHHHHHHTTTCSSCCEEEEECC
T ss_pred HhcCCCEEEEecCCCCCCH---HHHHHHHHhcCccCCCeEEEEeC
Confidence 3468999999988777763 23444444332112345555554
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=59.49 E-value=41 Score=28.77 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=34.6
Q ss_pred HHHHHHh--cCCCEEEEeCCCCCC----------------CHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 14 SFAVALM--HDPELLILDEPTVGV----------------DPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 14 ~laral~--~~p~~lllDEP~~gl----------------D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
..++.+. .+|++++.|+-.+-. -.....++...|..++++.+.+||+++|-..
T Consensus 800 ~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r 870 (2050)
T 3cmu_A 800 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 870 (2050)
T ss_dssp HHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred HHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccc
Confidence 3445544 479999999832211 1122344555778888888999999999654
No 253
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=59.44 E-value=14 Score=20.42 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=19.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++|+|-...+.| ...+.+.+++.....+..+|++|-
T Consensus 44 ~~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 44 HHHPDLVILDMDIIGEN---SPNLCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp HHCCSEEEEETTC---------CHHHHHHTSTTCTTCCEEEEEC
T ss_pred cCCCCEEEEeCCCCCCc---HHHHHHHHHcCcccCCCCEEEEec
Confidence 35899999997665544 223444444432112344555443
No 254
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=59.25 E-value=0.45 Score=30.07 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=24.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEecCHHHHHh-hcce
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITK----DGNKTVIITTHYIEEARQ-AHTV 74 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~----~~g~tvi~~tH~~~~~~~-~d~i 74 (79)
+..|+..+++|++.+.|..+.+.+.+.+..... .....+++++|+++.+.. ..++
T Consensus 146 v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~ 205 (231)
T 3lnc_A 146 IMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNI 205 (231)
T ss_dssp EECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHH
Confidence 445566667788888887766666555544321 124578888998876643 4443
No 255
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=59.21 E-value=19 Score=23.13 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=25.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 23 PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 23 p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
-..+|.|= |.++...+++.+.+++... ...+-|+.||-
T Consensus 84 ~~~ilIDt---g~~~~~~~~l~~~i~~~~~-~~I~~Ii~TH~ 121 (270)
T 4eyb_A 84 GRVLVVDT---AWTDDQTAQILNWIKQEIN-LPVALAVVTHA 121 (270)
T ss_dssp TEEEEESC---CSSHHHHHHHHHHHHHHTC-CCEEEEEECSS
T ss_pred CEEEEEeC---CCCHHHHHHHHHHHHHhcC-CceEEEEeCCC
Confidence 45677774 4577777888887776532 24666888884
No 256
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=58.90 E-value=7 Score=25.70 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=23.8
Q ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHh---cCCcEEEEEecCH
Q psy5634 22 DPELLILDEPTVGVDPL-LRQSIWNHLVQITK---DGNKTVIITTHYI 65 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~-~~~~i~~~l~~~~~---~~g~tvi~~tH~~ 65 (79)
+|.++++||.-.-.+.. ....+..++..... ..+..+|++|+..
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 36799999985432211 33444444432211 3357888899876
No 257
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=58.46 E-value=21 Score=19.74 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=24.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++|+|=-..+.|- .++.+.+++........+|++|-
T Consensus 46 ~~~~dlvl~D~~lp~~~g---~~~~~~lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 46 KNLPDALICDVLLPGIDG---YTLCKRVRQHPLTKTLPILMLTA 86 (136)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHSGGGTTCCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHcCCCcCCccEEEEec
Confidence 468999999988777773 33445555432122344555443
No 258
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=58.17 E-value=11 Score=23.47 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=26.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
+.+++++||--. +|+.. .+.+.++... |..||++.++.
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~-~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAES-GRRVICAGLDM 118 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHT-TCEEEEEECSB
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhC-CCEEEEEeccc
Confidence 479999999543 66443 3445665544 88999998854
No 259
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=58.04 E-value=17 Score=21.02 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
+..++++||. ..+++..+..+.+.+... ..+..+|.+|+.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE--HRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS--SCSSCEEEEESS
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc--CCCEEEEEECCc
Confidence 5689999998 578888888888887432 224556666653
No 260
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=57.79 E-value=16 Score=26.52 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=33.1
Q ss_pred HHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 12 RVSFAVALMHD-PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 12 rv~laral~~~-p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
.+++..+|+.. |+++++=|-- .|.. .+.+.+++..+..+.+||+++--
T Consensus 278 ~LAl~agLA~g~ad~ilIPE~p--~~l~---~i~~~i~~r~~~k~~~IIvVaEG 326 (487)
T 2hig_A 278 FIAAQAAVASAQANICLVPENP--ISEQ---EVMSLLERRFCHSRSCVIIVAEG 326 (487)
T ss_dssp HHHHHHHHHHTCCSEEECTTSC--CCHH---HHHHHHHHHTTSCSEEEEEEETT
T ss_pred HHHHHHHHhhCCCCEEEeCCCC--CCHH---HHHHHHHHHHhcCCcEEEEEeCC
Confidence 47888999998 9999996542 2332 55666666544557788887754
No 261
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.68 E-value=32 Score=24.27 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHH---HhcCCcEEEEEecCHHH
Q psy5634 13 VSFAVALMHDPELLILDEPTVGV----------DPLLRQSIWNHLVQI---TKDGNKTVIITTHYIEE 67 (79)
Q Consensus 13 v~laral~~~p~~lllDEP~~gl----------D~~~~~~i~~~l~~~---~~~~g~tvi~~tH~~~~ 67 (79)
-.+..|-...|.++++||--+-. |......+..+|..+ ....+..||.+|+.++.
T Consensus 232 ~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 232 ELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp HHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred HHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 34555666789999999964322 333444455555443 22346678889986643
No 262
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=57.65 E-value=16 Score=25.48 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDP 37 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~ 37 (79)
.+|..+ +-.|+..+....=+++.||+..++..
T Consensus 206 ~~~~~~--~~~i~~~~~~~~~~~~~D~~Y~~~~~ 237 (420)
T 4h51_A 206 DPSQEQ--WNEIASLMLAKHHQVFFDSAYQGYAS 237 (420)
T ss_dssp CCCHHH--HHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred CCCHHH--HHHHHHHHHhcCceEeeehhhhhhcc
Confidence 344444 33445555566778999999999854
No 263
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=57.62 E-value=26 Score=24.51 Aligned_cols=43 Identities=28% Similarity=0.162 Sum_probs=31.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 24 ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 24 ~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.+++.|+-+..-|+..+..+.+++.. +++.|..|.++|.+-+.
T Consensus 310 tLLI~d~l~r~~d~~~r~~~~~L~e~-~~~~Gg~V~ivs~~~~~ 352 (390)
T 3mca_B 310 ELLISDSLFRSSDIATRKKWVSLVEG-VKEINCPVYIFSSLHES 352 (390)
T ss_dssp SCEEEETTCCCSCHHHHHHHHHHHHH-HHHTTCCEEEECTTSHH
T ss_pred EEEEecccccCCChhHHHHHHHHHHH-HHhcCCEEEEECCCCCc
Confidence 68999999988899888888765544 45557777777765443
No 264
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=57.54 E-value=17 Score=20.50 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=23.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++|+|--..+.|- ..+.+.+++.....+..+|++|.
T Consensus 57 ~~~~dliilD~~l~~~~g---~~~~~~lr~~~~~~~~pii~~t~ 97 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTG---IDILKLVKENPHTRRSPVVILTT 97 (152)
T ss_dssp TTCBEEEEECSBCSSSBH---HHHHHHHHHSTTTTTSCEEEEES
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHhcccccCCCEEEEec
Confidence 357999999987777663 33445555421122344444443
No 265
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=57.49 E-value=16 Score=22.81 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHh----cCCcEEEEEecCHH
Q psy5634 40 RQSIWNHLVQITK----DGNKTVIITTHYIE 66 (79)
Q Consensus 40 ~~~i~~~l~~~~~----~~g~tvi~~tH~~~ 66 (79)
..++...+.++.+ ..+.+|++|||-.-
T Consensus 155 ~~R~~~~l~~l~~~~~~~~~~~vlvVsHg~~ 185 (237)
T 3r7a_A 155 STRIKAEIDKISEEAAKDGGGNVLVVVHGLL 185 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEcCHHH
Confidence 3455566666543 34789999999653
No 266
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=57.48 E-value=32 Score=22.63 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=34.9
Q ss_pred CCCEEEEeCCCCC--------------CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 22 DPELLILDEPTVG--------------VDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 22 ~p~~lllDEP~~g--------------lD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
+-+++.+|-|... .+.....++.+.+.++.+ .|.-++++-++.+++..
T Consensus 174 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~-~~~~~~lS~~d~~~i~~ 235 (278)
T 2g1p_A 174 DSSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVE-RHIPVLISNHDTMLTRE 235 (278)
T ss_dssp TTEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHH-TTCCEEEEEECCHHHHH
T ss_pred CCCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHh-cCCeEEEEcCCCHHHHH
Confidence 3479999998743 355566778888888754 46679999988777654
No 267
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=57.40 E-value=32 Score=21.34 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=28.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITK-DGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~-~~g~tvi~~tH 63 (79)
..+|+++|+..+.+.++......+..+...... ....++|+.+|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 457899999999888887665555444332211 11257888888
No 268
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.26 E-value=29 Score=24.62 Aligned_cols=56 Identities=23% Similarity=0.378 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHH---HhcCCcEEEEEecCHHH
Q psy5634 12 RVSFAVALMHDPELLILDEPT----------VGVDPLLRQSIWNHLVQI---TKDGNKTVIITTHYIEE 67 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~----------~glD~~~~~~i~~~l~~~---~~~~g~tvi~~tH~~~~ 67 (79)
|-.+..|-...|.++++||-- .+-+......+..+|..+ ....+..||.+|+.++.
T Consensus 264 r~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 264 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp HHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred HHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 445566667789999999952 122333334444444443 12235677788887653
No 269
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=57.20 E-value=19 Score=23.87 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=26.0
Q ss_pred CCEEEEeCCCCCCC-----HH---------------HHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 23 PELLILDEPTVGVD-----PL---------------LRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 23 p~~lllDEP~~glD-----~~---------------~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
-|++++|=|++|+. |. .+..+++.+.+..+. |..++++|...
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp-GG~lv~stcs~ 249 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP-GGILVYSTCSL 249 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESCC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEeCCC
Confidence 48999999998754 21 123455555555554 55778877643
No 270
>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus cereus atcc 14579} SCOP: c.150.1.3 PDB: 2rad_A
Probab=57.08 E-value=17 Score=25.94 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=44.0
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634 18 ALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHT 73 (79)
Q Consensus 18 al~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~ 73 (79)
..+.++++++|=|++=|-......+. ++++.+.++.|.++|.+.-+.......|+
T Consensus 70 ~~i~~ariV~lGEatHG~~ef~~~r~-~l~r~Lve~~Gf~~va~E~d~~~~~~vn~ 124 (451)
T 3b55_A 70 NMVGSASIVGLGEATHGAHEVFTMKH-RIVKYLVSEKGFTNLVLEEGWDRALELDR 124 (451)
T ss_dssp HHHTTCSEEEEEESCTTBHHHHHHHH-HHHHHHHHHSCCCEEEEEEEHHHHHHHHH
T ss_pred HhhcCCCEEEEeCCCCCchHHHHHHH-HHHHHHHHhcCCeEEEEecChHHHHHHHH
Confidence 44679999999999999988877763 77777777789999999998876655444
No 271
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=56.98 E-value=23 Score=19.57 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++|+|--..+.|-. .+.+.+++........||++|.
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 45 ATPPDLVLLDIMMEPMDGW---ETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHSTTTTTSCEEEEES
T ss_pred ccCCCEEEEeCCCCCCCHH---HHHHHHHcCcccCCCCEEEEEC
Confidence 3579999999877777632 3444454421112345655554
No 272
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=56.95 E-value=44 Score=28.55 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HhcCCcEEEEEecCH
Q psy5634 11 RRVSFAVALM--HDPELLILDEPTVGVD-P------------LLRQSIWNHLVQI---TKDGNKTVIITTHYI 65 (79)
Q Consensus 11 qrv~laral~--~~p~~lllDEP~~glD-~------------~~~~~i~~~l~~~---~~~~g~tvi~~tH~~ 65 (79)
+-+.+++.++ .+|+++++|...+-.. . ...+.+.+.++.+ +++.+.+||+++|-.
T Consensus 448 ~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 448 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 3455566554 5799999998765442 1 1122344444444 677899999999853
No 273
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=56.86 E-value=4.6 Score=23.49 Aligned_cols=46 Identities=20% Similarity=0.061 Sum_probs=24.6
Q ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 21 HDPELLILDEPTVGVDP---LLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~---~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
.+|.++++||--.-... .....+.+.+..+....+..+|++|....
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 45779999997432211 11122334444444444667788877654
No 274
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=56.05 E-value=22 Score=19.15 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++++|--..+.|-. .+.+.+++.....+..+|++|.
T Consensus 49 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 89 (129)
T 1p6q_A 49 QNPHHLVISDFNMPKMDGL---GLLQAVRANPATKKAAFIILTA 89 (129)
T ss_dssp TSCCSEEEECSSSCSSCHH---HHHHHHTTCTTSTTCEEEECCS
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHhcCccccCCCEEEEeC
Confidence 3579999999877777632 3344444321112445665554
No 275
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=55.54 E-value=9.7 Score=25.06 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 4 SSRGGQQRRVSFAVALMHD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+.+.+..+..+.+.++.. ++++=+ |-+ .+.. +.+.+.+.+++.|..||++.||.
T Consensus 93 ~~~~~~~~~~~ll~~~~~~~~~d~iDv-El~--~~~~----~~~~l~~~a~~~~~kiI~S~Hdf 149 (258)
T 4h3d_A 93 EKLISRDYYTTLNKEISNTGLVDLIDV-ELF--MGDE----VIDEVVNFAHKKEVKVIISNHDF 149 (258)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCCSEEEE-EGG--GCHH----HHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHhcCCchhhHH-hhh--ccHH----HHHHHHHHHHhCCCEEEEEEecC
Confidence 3445556677776666543 555433 322 2222 23334444445678899999975
No 276
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=55.39 E-value=15 Score=21.85 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 41 QSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 41 ~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
..+.+.+.++.+..+.++++|||..-
T Consensus 86 ~r~~~~l~~~~~~~~~~vlvV~H~~~ 111 (161)
T 1ujc_A 86 GLVSAYLQALTNEGVASVLVISHLPL 111 (161)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTH
T ss_pred HHHHHHHHHHhccCCCeEEEEeCHHH
Confidence 45556666654334679999999864
No 277
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.05 E-value=44 Score=23.59 Aligned_cols=54 Identities=24% Similarity=0.392 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHH---HhcCCcEEEEEecCHH
Q psy5634 13 VSFAVALMHDPELLILDEP----------TVGVDPLLRQSIWNHLVQI---TKDGNKTVIITTHYIE 66 (79)
Q Consensus 13 v~laral~~~p~~lllDEP----------~~glD~~~~~~i~~~l~~~---~~~~g~tvi~~tH~~~ 66 (79)
-.+..|-...|.++++||- ..+-|....+.+..+|..+ ....+..||.+|+.++
T Consensus 256 ~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 256 DVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp HHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 3455566678999999986 2233444444444444433 2334677888998664
No 278
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=54.72 E-value=45 Score=22.34 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCC----------HHHHHHHHHHHHHHHh-cCCcEEEEEecCHH
Q psy5634 14 SFAVALMHDPELLILDEPTVGVD----------PLLRQSIWNHLVQITK-DGNKTVIITTHYIE 66 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~~glD----------~~~~~~i~~~l~~~~~-~~g~tvi~~tH~~~ 66 (79)
.+..+-..+|.+|++||--+-.. ......++..+..... ..+..||.+|+..+
T Consensus 135 ~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 135 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp HHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred HHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 34444556899999999643221 1123334443333211 23556666787653
No 279
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=54.67 E-value=23 Score=19.02 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=22.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++++|--..+.|-. ++.+.+++........+|++|.
T Consensus 47 ~~~~dlvi~D~~l~~~~g~---~l~~~l~~~~~~~~~~ii~~s~ 87 (128)
T 1jbe_A 47 AGGYGFVISDWNMPNMDGL---ELLKTIRAXXAMSALPVLMVTA 87 (128)
T ss_dssp TCCCCEEEEESCCSSSCHH---HHHHHHHC--CCTTCCEEEEES
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhhcccCCCcEEEEec
Confidence 3579999999887777642 3444444321112344555543
No 280
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=54.46 E-value=24 Score=19.08 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=17.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
..|+++++|--..+.|- ..+.+.+++
T Consensus 54 ~~~dlvi~d~~~~~~~g---~~~~~~l~~ 79 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDG---REVLAEIKS 79 (140)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHHH
T ss_pred CCCcEEEEecCCCcccH---HHHHHHHHc
Confidence 47999999987777663 244455554
No 281
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=54.34 E-value=26 Score=19.41 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=22.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
..|+++|+|--..+.|- ..+.+.+++.....+..||++|.
T Consensus 51 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~ls~ 90 (147)
T 2zay_A 51 THPHLIITEANMPKISG---MDLFNSLKKNPQTASIPVIALSG 90 (147)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHTSTTTTTSCEEEEES
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHcCcccCCCCEEEEeC
Confidence 47999999987777663 23444454411112344555544
No 282
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=54.27 E-value=25 Score=19.31 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=22.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
.+|+++|+|--..+ ......+.+.+++.....+..||++|.
T Consensus 49 ~~~dlvi~D~~l~~--~~~g~~~~~~l~~~~~~~~~~ii~ls~ 89 (140)
T 3lua_A 49 DSITLIIMDIAFPV--EKEGLEVLSAIRNNSRTANTPVIIATK 89 (140)
T ss_dssp CCCSEEEECSCSSS--HHHHHHHHHHHHHSGGGTTCCEEEEES
T ss_pred CCCcEEEEeCCCCC--CCcHHHHHHHHHhCcccCCCCEEEEeC
Confidence 57999999965541 233455556666521122444555543
No 283
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=54.18 E-value=22 Score=18.48 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=23.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
..|+++++|-...+.+. ..+.+.+++.....+..+|++|.
T Consensus 44 ~~~dlii~d~~~~~~~~---~~~~~~l~~~~~~~~~~ii~~~~ 83 (119)
T 2j48_A 44 LQPIVILMAWPPPDQSC---LLLLQHLREHQADPHPPLVLFLG 83 (119)
T ss_dssp HCCSEEEEECSTTCCTH---HHHHHHHHHTCCCSSCCCEEEES
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhccccCCCCEEEEeC
Confidence 47999999987777664 23445555432112444555543
No 284
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=54.15 E-value=10 Score=28.73 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=22.0
Q ss_pred HHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 17 VALMHD-PELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 17 ral~~~-p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
.++-.. +.++++||. ..+++.....+.+.+.+
T Consensus 654 ~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 654 EAVRRRPYSVILFDEI-EKAHPDVFNILLQILDD 686 (854)
T ss_dssp HHHHHCSSEEEEESSG-GGSCHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEEecc-cccCHHHHHHHHHHhcc
Confidence 344434 589999999 45788777777666653
No 285
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=54.08 E-value=34 Score=22.26 Aligned_cols=13 Identities=8% Similarity=0.076 Sum_probs=10.7
Q ss_pred hcCCCEEEEeCCC
Q psy5634 20 MHDPELLILDEPT 32 (79)
Q Consensus 20 ~~~p~~lllDEP~ 32 (79)
...|.++++||--
T Consensus 97 ~~~~~vl~iDEiD 109 (293)
T 3t15_A 97 KGNMCCLFINDLD 109 (293)
T ss_dssp TSSCCCEEEECCC
T ss_pred cCCCeEEEEechh
Confidence 4579999999983
No 286
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=53.95 E-value=30 Score=20.10 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=26.4
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EecC
Q psy5634 18 ALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII-TTHY 64 (79)
Q Consensus 18 al~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~-~tH~ 64 (79)
.--.+|+++|+|=-.-++| .-++.+.+++.......-||+ ++|.
T Consensus 53 ~~~~~~DlillD~~MP~md---G~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 53 LKKGDFDFVVTDWNMPGMQ---GIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHCCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHhCCCCEEEEcCCCCCCC---HHHHHHHHHhCCCCCCCeEEEEECCC
Confidence 3346899999998888888 334455555432222344554 4544
No 287
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=53.44 E-value=21 Score=21.92 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCHH
Q psy5634 41 QSIWNHLVQITKD-GNKTVIITTHYIE 66 (79)
Q Consensus 41 ~~i~~~l~~~~~~-~g~tvi~~tH~~~ 66 (79)
+++...+.++.+. .+.+|++|||..-
T Consensus 127 ~R~~~~l~~l~~~~~~~~vlvVsHg~~ 153 (207)
T 1h2e_A 127 QRALEAVQSIVDRHEGETVLIVTHGVV 153 (207)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEcCHHH
Confidence 3344556555433 3679999999754
No 288
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=53.37 E-value=23 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHh---cCCcEEEEEecCHHH
Q psy5634 41 QSIWNHLVQITK---DGNKTVIITTHYIEE 67 (79)
Q Consensus 41 ~~i~~~l~~~~~---~~g~tvi~~tH~~~~ 67 (79)
.++...+.++.+ ..+.+|++|||..-.
T Consensus 168 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i 197 (264)
T 3mbk_A 168 NRSFQVTKEIISECKSKGNNILIVAHASSL 197 (264)
T ss_dssp HHHHHHHHHHHHHHTTSCSEEEEEECTTHH
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecHHHH
Confidence 345555555543 236799999998543
No 289
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=53.36 E-value=18 Score=22.51 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 39 LRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 39 ~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
...++...+.++.++...+|++|||..-
T Consensus 125 ~~~R~~~~l~~l~~~~~~~vlvVsHg~~ 152 (213)
T 3hjg_A 125 FSQRVSRAWSQIINDINDNLLIVTHGGV 152 (213)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCHHH
Confidence 3445556666665443468999999753
No 290
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=53.23 E-value=17 Score=22.45 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecCHH
Q psy5634 40 RQSIWNHLVQITKD-GNKTVIITTHYIE 66 (79)
Q Consensus 40 ~~~i~~~l~~~~~~-~g~tvi~~tH~~~ 66 (79)
..++...+.++.++ .+.+|++|||..-
T Consensus 128 ~~R~~~~l~~l~~~~~~~~vlvVsHg~~ 155 (208)
T 2a6p_A 128 NDRADSAVALALEHMSSRDVLFVSHGHF 155 (208)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEeCHHH
Confidence 34455556665432 3678999999754
No 291
>2qgm_A Succinoglycan biosynthesis protein; Q817Z0, NESG, X-RAY, BCR136, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus cereus atcc 14579} SCOP: c.150.1.3
Probab=52.95 E-value=25 Score=25.01 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=44.0
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634 17 VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHT 73 (79)
Q Consensus 17 ral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~ 73 (79)
...+.++++++|=|++=|-....+-+. ++++.+.++.|.++|.+.-+.......|+
T Consensus 68 ~~~~~~ariV~lGEatHG~~e~~~~r~-~l~r~Lve~~gf~~va~E~~~~~~~~vd~ 123 (445)
T 2qgm_A 68 KKMIGNAQYVGLGENTHGSSEIFTMKF-RLVKYLVTEMGFTNFAMEEDWGNGLKLNE 123 (445)
T ss_dssp HHHHTTCSEEEECCSSSCBHHHHHHHH-HHHHHHHHHHCCCEEEEEEEHHHHHHHHH
T ss_pred HHhhcCCCEEEEcCCCCCchHHHHHHH-HHHHHHHHhcCCeEEEEecChHHHHHHHH
Confidence 345679999999999999988777663 66777777778999999988876655544
No 292
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=52.90 E-value=26 Score=19.39 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=23.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++|+|--..+.|- ..+.+.+++.....+..+|++|.
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 49 QAKYDLIILDIGLPIANG---FEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp TCCCSEEEECTTCGGGCH---HHHHHHHHSSSTTTTCCEEEEET
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhcccccCCCEEEEeC
Confidence 467999999987766653 33444444311112444555553
No 293
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=52.61 E-value=39 Score=21.71 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 10 QRRVSFAVALMH---DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 10 kqrv~laral~~---~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
.+|+++..||.. +-++++.|+-. ++..-...+.+.|..+--..+..+++|+.+.....
T Consensus 105 ~rrlAl~sALs~k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~lg~~~~~~~LiV~~~~~~~~ 165 (210)
T 3v2d_F 105 VRKKGLAMAVADRAREGKLLLVEAFA--GVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRR 165 (210)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEESCCT--TCSSCHHHHHHHHHHTTCCSSSCEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEecccc--cCCccHHHHHHHHHHcCCCCCCceEEEeCChhHHH
Confidence 356777777754 45799999864 34444566677777763211234555555544443
No 294
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=52.33 E-value=28 Score=19.22 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=22.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++++|--..+.|- ..+.+.+++. ....+|++|.
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~l~~~l~~~---~~~~ii~ls~ 83 (136)
T 2qzj_A 46 SNKYDLIFLEIILSDGDG---WTLCKKIRNV---TTCPIVYMTY 83 (136)
T ss_dssp HCCCSEEEEESEETTEEH---HHHHHHHHTT---CCCCEEEEES
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHccC---CCCCEEEEEc
Confidence 457999999977666653 2344444432 1344555543
No 295
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=52.32 E-value=28 Score=26.80 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 12 RVSFAVALMHDPELLILDEPTV----------GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~----------glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
|-.+..|--..|.+|++||--+ ..+.....+++..+..+....+..||.+|..++.+
T Consensus 287 r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 3456667778899999998622 12223334444444444344467777888876543
No 296
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=52.21 E-value=29 Score=19.31 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=24.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++|+|-...+.|- ..+.+.+++.. .+..+|++|.
T Consensus 47 ~~~~dlvllD~~lp~~~g---~~l~~~l~~~~--~~~~ii~ls~ 85 (141)
T 3cu5_A 47 KHPPNVLLTDVRMPRMDG---IELVDNILKLY--PDCSVIFMSG 85 (141)
T ss_dssp TSCCSEEEEESCCSSSCH---HHHHHHHHHHC--TTCEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhhC--CCCcEEEEeC
Confidence 357999999988777763 34445555432 2445555554
No 297
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=52.05 E-value=24 Score=22.00 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 32 TVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 32 ~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+||++...+.+.+++.... +.|..+.+++=..
T Consensus 30 ~~gl~~~aa~al~~m~~~a~-~~Gi~l~i~sgyR 62 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMA-KEGIYLCVAQGYR 62 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHH-TTTCCEEEEECCC
T ss_pred ccccCHHHHHHHHHHHHHHH-HCCCeEEEEEEEC
Confidence 46899999999999888764 4587777766543
No 298
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=51.87 E-value=20 Score=24.44 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEec
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTH 63 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-~g~tvi~~tH 63 (79)
.+++..+|+..|+++++=|- ..|. +.+.+.+++..++ .+.++|+++-
T Consensus 175 ~lA~~a~la~ga~~iliPE~--~~~~---~~~~~~i~~~~~~g~~~~iivvaE 222 (319)
T 4a3s_A 175 DIALWAGLAGGAESILIPEA--DYDM---HEIIARLKRGHERGKKHSIIIVAE 222 (319)
T ss_dssp HHHHHHHHHHTCSEEEBTTB--CCCH---HHHHHHHHHHHTTTCCCEEEEEET
T ss_pred HHHHHHHhccCCCEEEecCC--CCCH---HHHHHHHHHHHHcCCCceEEEEEC
Confidence 47888899999999999653 3343 3455555554433 3567777764
No 299
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=51.85 E-value=8.8 Score=24.83 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=24.5
Q ss_pred CCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 22 DPELLILDEPTVGVDPL----------------LRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~----------------~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..|++++|=|++|+... ....+++.+.+..+. |..++++|..
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~stcs 213 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK-DGELVYSTCS 213 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE-EEEEEEEESC
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEECC
Confidence 45999999999986532 124455555555554 5577777754
No 300
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=51.41 E-value=22 Score=21.61 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=24.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 24 ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 24 ~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..+|+| +|..+...+.+.+.+.+. .......|+.||.
T Consensus 33 ~~iLiD---~G~~~~~~~~~~~~l~~~-~~~~i~~ii~TH~ 69 (227)
T 3iog_A 33 GVTVVG---ATWTPDTARELHKLIKRV-SRKPVLEVINTNY 69 (227)
T ss_dssp CEEEES---CCSSHHHHHHHHHHHHTT-CCSCEEEEECSSS
T ss_pred eEEEEE---CCCChHHHHHHHHHHHHh-cCCCeEEEEeCCC
Confidence 577777 456666677777777663 2234677888884
No 301
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=51.33 E-value=42 Score=20.95 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHH---HhcCCcEEEEEecCHH
Q psy5634 15 FAVALMHDPELLILDEP----------TVGVDPLLRQSIWNHLVQI---TKDGNKTVIITTHYIE 66 (79)
Q Consensus 15 laral~~~p~~lllDEP----------~~glD~~~~~~i~~~l~~~---~~~~g~tvi~~tH~~~ 66 (79)
+..+....|.++++||- ..+-.......+..++..+ ....+..+|.+|+..+
T Consensus 97 ~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 97 FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp HHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 34444556889999996 1111112222333333333 1233567778888764
No 302
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=51.03 E-value=25 Score=22.48 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhc---CCcEEEEEecCHH
Q psy5634 41 QSIWNHLVQITKD---GNKTVIITTHYIE 66 (79)
Q Consensus 41 ~~i~~~l~~~~~~---~g~tvi~~tH~~~ 66 (79)
+++...+.++.++ .+.+|++|||..-
T Consensus 177 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 205 (273)
T 3d4i_A 177 ERCAVSMGQIINTCPQDMGITLIVSHSSA 205 (273)
T ss_dssp HHHHHHHHHHHTTSTTCCSEEEEEECTTH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEechHH
Confidence 3344556665432 3679999999854
No 303
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=50.81 E-value=19 Score=22.93 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhc---CCcEEEEEecCHH
Q psy5634 42 SIWNHLVQITKD---GNKTVIITTHYIE 66 (79)
Q Consensus 42 ~i~~~l~~~~~~---~g~tvi~~tH~~~ 66 (79)
++...+.++.++ .+.+|++|||..-
T Consensus 168 Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 195 (263)
T 3c7t_A 168 RGEVAMQAAVNDTEKDGGNVIFIGHAIT 195 (263)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeCHHH
Confidence 344556655432 3578999999753
No 304
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=50.38 E-value=0.13 Score=35.98 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCCC
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPELLI-LDEPTV 33 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~ll-lDEP~~ 33 (79)
...+++|+++|+..+.++...|++++ ||+|+.
T Consensus 280 ~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 280 EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp SCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 34678889988887777778888877 887765
No 305
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.34 E-value=38 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=21.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
.+.+++|||. ..+++.....+.+.+.+
T Consensus 579 ~~~vl~lDEi-~~~~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 579 PYSVVLLDAI-EKAHPDVFNILLQVLED 605 (758)
T ss_dssp SSSEEEEECG-GGSCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCc-cccCHHHHHHHHHHhcc
Confidence 4589999998 45688888888887765
No 306
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.86 E-value=34 Score=24.48 Aligned_cols=57 Identities=28% Similarity=0.433 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHH---HhcCCcEEEEEecCHHHH
Q psy5634 12 RVSFAVALMHDPELLILDEPTV----------GVDPLLRQSIWNHLVQI---TKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~----------glD~~~~~~i~~~l~~~---~~~~g~tvi~~tH~~~~~ 68 (79)
|-.+..|-...|.++++||--+ +-+......+..+|..+ ....+..||.+|+.++.+
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 4455666667899999998632 22333444455555443 123456788899877653
No 307
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=49.78 E-value=30 Score=18.75 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=25.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
-.+|+++|+|-...+.|- ..+.+.+++.. .+..+|++|...
T Consensus 44 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~~~ 84 (134)
T 3f6c_A 44 TLKPDIVIIDVDIPGVNG---IQVLETLRKRQ--YSGIIIIVSAKN 84 (134)
T ss_dssp HHCCSEEEEETTCSSSCH---HHHHHHHHHTT--CCSEEEEEECC-
T ss_pred hcCCCEEEEecCCCCCCh---HHHHHHHHhcC--CCCeEEEEeCCC
Confidence 368999999988877764 33444455432 245566655543
No 308
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.60 E-value=54 Score=23.67 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---hcCCcEEEEEecCHH
Q psy5634 11 RRVSFAVALMHDPELLILDEPTVGV----------DPLLRQSIWNHLVQIT---KDGNKTVIITTHYIE 66 (79)
Q Consensus 11 qrv~laral~~~p~~lllDEP~~gl----------D~~~~~~i~~~l~~~~---~~~g~tvi~~tH~~~ 66 (79)
-|-.+..|-...|.++++||--+-. +......+..+|.++- ...+..||.+|+.++
T Consensus 291 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 291 VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 3456667777889999999985432 2333444455555441 223567788887654
No 309
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=49.27 E-value=7.6 Score=25.12 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=26.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
+.+++++||--. +|+... +.+.++... |..||+..++.
T Consensus 101 ~~dvViIDEaQF-~~~~~V----~~l~~l~~~-~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIV----EVVQVLANR-GYRVIVAGLDQ 138 (214)
T ss_dssp SCCEEEECCGGG-SCTTHH----HHHHHHHHT-TCEEEEEECSB
T ss_pred CCCEEEEECccc-CCHHHH----HHHHHHhhC-CCEEEEEeccc
Confidence 479999999855 654433 445555444 88999999943
No 310
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=48.94 E-value=22 Score=22.28 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=17.1
Q ss_pred HHHHHHHHHHH-HHh--cCCcEEEEEecCHH
Q psy5634 39 LRQSIWNHLVQ-ITK--DGNKTVIITTHYIE 66 (79)
Q Consensus 39 ~~~~i~~~l~~-~~~--~~g~tvi~~tH~~~ 66 (79)
..+++...+.+ +.+ ..+.+|++|||..-
T Consensus 154 ~~~R~~~~l~~~i~~~~~~~~~vlvVsHg~~ 184 (240)
T 1qhf_A 154 VIDRLLPYWQDVIAKDLLSGKTVMIAAHGNS 184 (240)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEeCHHH
Confidence 34455555555 332 14678999999753
No 311
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=48.94 E-value=49 Score=21.07 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=27.2
Q ss_pred CCCEEEEeCCCC--------CCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 22 DPELLILDEPTV--------GVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 22 ~p~~lllDEP~~--------glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
++.++++||--. ..+......+++.+.+. ..+..+|++|+.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 688999999742 33666667777766643 235667777754
No 312
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=48.82 E-value=31 Score=18.69 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=38.9
Q ss_pred HHHHHHhcC-CCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 14 SFAVALMHD-PELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 14 ~laral~~~-p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.+...+..+ ++.+++| .....+|......+....++..+ .|..+.++.-....
T Consensus 33 ~l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~v 87 (116)
T 1th8_B 33 QVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKN-VGGQMVVCAVSPAV 87 (116)
T ss_dssp HHHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHH-TTCCEEEESCCHHH
T ss_pred HHHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHH-hCCeEEEEeCCHHH
Confidence 344444444 7889999 78899999999999988877654 47778877665543
No 313
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=48.49 E-value=32 Score=18.74 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++++|--..+.|- ..+.+.+++.....+..+|++|.
T Consensus 52 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 52 TVKPDVVMLDLMMVGMDG---FSICHRIKSTPATANIIVIAMTG 92 (143)
T ss_dssp HTCCSEEEEETTCTTSCH---HHHHHHHHTSTTTTTSEEEEEES
T ss_pred hcCCCEEEEecccCCCcH---HHHHHHHHhCccccCCcEEEEeC
Confidence 357999999987777663 23444444421122455665554
No 314
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=48.31 E-value=26 Score=22.01 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=25.5
Q ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEe
Q psy5634 22 DPELLILDEP----TVGVDPLLRQSIWNHLVQITKDG-NKTVIITT 62 (79)
Q Consensus 22 ~p~~lllDEP----~~glD~~~~~~i~~~l~~~~~~~-g~tvi~~t 62 (79)
+|++++-||- ..-+|+...+.+..+-....... |.-+.++|
T Consensus 63 n~divFrDee~tg~~~~Md~rl~d~L~~L~~~v~~~~~g~pi~V~S 108 (170)
T 3n1g_B 63 NPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTE 108 (170)
T ss_dssp CTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CCCcEEecccccCCcccCCHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 8999999999 55567776666655433332222 44555554
No 315
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=47.97 E-value=40 Score=22.12 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-h--------cCCcEEEEEecC
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQIT-K--------DGNKTVIITTHY 64 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~-~--------~~g~tvi~~tH~ 64 (79)
+..++++||. ..+.+.....++..+.+.. . ..+..+|.+|+.
T Consensus 96 ~~g~L~LDEi-~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 96 DGGTLFLDEI-GDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TTSEEEEESC-TTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCCEEEEecc-ccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 5679999996 5677777777777766431 0 123568888875
No 316
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=47.84 E-value=4.5 Score=26.99 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy5634 14 SFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQI 50 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~ 50 (79)
++|.|-+. -.++| |||.|+|..+..++.++..+.
T Consensus 178 avAka~a~-~g~~l--EPTGGIdl~N~~~I~~i~l~a 211 (249)
T 3m0z_A 178 AVAKACAA-HDFWL--EPTGGIDLENYSEILKIALDA 211 (249)
T ss_dssp HHHHHHHH-TTCEE--EEBSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHH-cCceE--CCCCCccHhhHHHHHHHHHHc
Confidence 44555554 34433 999999999999988877653
No 317
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=47.75 E-value=35 Score=19.06 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=17.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
..|+++++|--..+.|- ..+.+.+++
T Consensus 60 ~~~dlillD~~lp~~~g---~~l~~~l~~ 85 (149)
T 1i3c_A 60 PRPNLILLDLNLPKKDG---REVLAEIKQ 85 (149)
T ss_dssp CCCSEEEECSCCSSSCH---HHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHh
Confidence 36999999987777773 234444554
No 318
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=47.72 E-value=33 Score=18.74 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=24.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCcEEEEEec
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQIT--KDGNKTVIITTH 63 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~--~~~g~tvi~~tH 63 (79)
..|+++|+|--..+.|- ..+.+.+++.. ......+|++|.
T Consensus 59 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 59 RWPSIICIDINMPGING---WELIDLFKQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp CCCSEEEEESSCSSSCH---HHHHHHHHHHCGGGTTTCEEEEECS
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHHhhhhccCCCeEEEEeC
Confidence 67999999988777774 33445555521 122445555554
No 319
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=47.19 E-value=39 Score=19.37 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=18.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQI 50 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~ 50 (79)
-.+|+++|+|--..+.|- ..+.+.+++.
T Consensus 69 ~~~~dlvilD~~l~~~~g---~~l~~~lr~~ 96 (164)
T 3t8y_A 69 ELKPDVITMDIEMPNLNG---IEALKLIMKK 96 (164)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhc
Confidence 457999999987777663 3344445543
No 320
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=47.10 E-value=4.7 Score=27.23 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 14 SFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
++|.|-+. -.++| |||.|+|..+..++.++..+
T Consensus 201 avAkAca~-~g~~l--EPTGGIdl~Nf~~I~~i~l~ 233 (275)
T 3m6y_A 201 AVAKACAE-EGFAL--EPTGGIDKENFETIVRIALE 233 (275)
T ss_dssp HHHHHHHH-HTCEE--EEBSSCCTTTHHHHHHHHHH
T ss_pred HHHHHHHH-cCceE--CCCCCccHhHHHHHHHHHHH
Confidence 34444443 34433 99999999999988877665
No 321
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=47.06 E-value=21 Score=22.65 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHh---cCCcEEEEEecCHH
Q psy5634 40 RQSIWNHLVQITK---DGNKTVIITTHYIE 66 (79)
Q Consensus 40 ~~~i~~~l~~~~~---~~g~tvi~~tH~~~ 66 (79)
..++...+.++.. ..+.+|++|||..-
T Consensus 164 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 193 (257)
T 3gp3_A 164 VARVLPLWNESIAPAVKAGKQVLIAAHGNS 193 (257)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCcHH
Confidence 3455566665432 24679999999753
No 322
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=46.73 E-value=5.4 Score=25.62 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=26.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
.++.++++||. ..++......+.+.+.+. ..+..+|++|....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~--~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS 143 (319)
T ss_dssp CCCEEEEEETG-GGSCHHHHHTTGGGTSSS--SSSEEEEEEESCGG
T ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 45899999995 446666555555544332 13466777776654
No 323
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=46.72 E-value=17 Score=19.52 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=21.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EecC
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII-TTHY 64 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~-~tH~ 64 (79)
.+|+++++|--..+.|- ..+.+.+++.....+..+|+ +++.
T Consensus 45 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (127)
T 2jba_A 45 PWPDLILLAWMLPGGSG---IQFIKHLRRESMTRDIPVVMLTARG 86 (127)
T ss_dssp SCCSEEEEESEETTEEH---HHHHHHHHTSTTTTTSCEEEEEETT
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhCcccCCCCEEEEeCCC
Confidence 36999999976666553 23444444321112344444 4544
No 324
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=46.50 E-value=31 Score=18.11 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=18.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
-.+|+++++|--..+.|-. .+.+.+++
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~ 69 (120)
T 2a9o_A 43 AEQPDIIILDLMLPEIDGL---EVAKTIRK 69 (120)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHH
T ss_pred hCCCCEEEEeccCCCCCHH---HHHHHHHh
Confidence 3579999999877776632 34444554
No 325
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=46.31 E-value=52 Score=21.07 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=22.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQI 50 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~ 50 (79)
.++.++++||- ..+++.....+...+.+.
T Consensus 89 ~~~~~l~lDEi-~~l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 89 EEGDILFIDEI-HRLSRQAEEHLYPAMEDF 117 (324)
T ss_dssp CTTCEEEETTT-TSCCHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECC-cccccchHHHHHHHHHhh
Confidence 47899999997 467777777777777653
No 326
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=46.21 E-value=6.2 Score=25.30 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=21.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQI 50 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~ 50 (79)
.+|+|++-||..+|-|......+.+.|..+
T Consensus 70 ~n~dIvF~deE~tgadR~Mt~Rc~~kL~~L 99 (187)
T 3k7i_B 70 YNPDIIFKDEENTGADRLMTQRCKDRLNSL 99 (187)
T ss_dssp CCTTEEECCTTSSSGGGEECHHHHHHHHHH
T ss_pred CCCceEecCccCCCcchhhCHHHHHHHHHH
Confidence 478999999998887665555555555444
No 327
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=46.13 E-value=14 Score=25.37 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=30.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
.|-++++||-.+=.... .+.+.+... +..|..++++++++..+.
T Consensus 279 ~~~~~~lDE~~~l~~~~---~l~~~~~~~-R~~g~~~~~~~Qs~~ql~ 322 (437)
T 1e9r_A 279 RRLWLFIDELASLEKLA---SLADALTKG-RKAGLRVVAGLQSTSQLD 322 (437)
T ss_dssp CCEEEEESCGGGSCBCS---SHHHHHHHC-TTTTEEEEEEESCHHHHH
T ss_pred ccEEEEEEcccccccch---hHHHHHHHH-hccCCEEEEEecCHHHHH
Confidence 35689999986644311 344445544 567999999999998664
No 328
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=46.11 E-value=18 Score=22.30 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhc---CCcEEEEEecCHH
Q psy5634 41 QSIWNHLVQITKD---GNKTVIITTHYIE 66 (79)
Q Consensus 41 ~~i~~~l~~~~~~---~g~tvi~~tH~~~ 66 (79)
.++...+.++... .+.+|++|||..-
T Consensus 138 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 166 (211)
T 1fzt_A 138 ERVLPYYKSTIVPHILKGEKVLIAAHGNS 166 (211)
T ss_dssp HHHHHHHHHHHTTHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHHHHhhhhcCCCeEEEEeChHH
Confidence 3455666655321 3568999999753
No 329
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=46.00 E-value=26 Score=22.08 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=17.6
Q ss_pred HHHHHHHHHHH-HHh--cCCcEEEEEecCHH
Q psy5634 39 LRQSIWNHLVQ-ITK--DGNKTVIITTHYIE 66 (79)
Q Consensus 39 ~~~~i~~~l~~-~~~--~~g~tvi~~tH~~~ 66 (79)
...++...+.+ +.+ ..+.+|++|||..-
T Consensus 156 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 186 (249)
T 1e58_A 156 TIDRVIPYWNETILPRMKSGERVIIAAHGNS 186 (249)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcChHH
Confidence 34556666655 332 24678999999753
No 330
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=45.76 E-value=30 Score=19.66 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 40 RQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 40 ~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+++.+.|.++.++.+..||++|-+.
T Consensus 38 ~ee~~~~~~~l~~~~digIIlIte~i 63 (102)
T 2i4r_A 38 DEEIVKAVEDVLKRDDVGVVIMKQEY 63 (102)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEEGGG
T ss_pred HHHHHHHHHHHhhCCCeEEEEEeHHH
Confidence 45667777777776678999999754
No 331
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=45.51 E-value=49 Score=21.64 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=28.7
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
++-||-| .+.++.....++.+.+.+...+... +|++|-
T Consensus 38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg 77 (280)
T 2f6q_A 38 KIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTG 77 (280)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeC
Confidence 3457766 5999999999999999988665566 555553
No 332
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=45.21 E-value=32 Score=19.02 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.1
Q ss_pred CCCEEEEeCCCCCCC
Q psy5634 22 DPELLILDEPTVGVD 36 (79)
Q Consensus 22 ~p~~lllDEP~~glD 36 (79)
.|+++|+|--..+.|
T Consensus 60 ~~dlvilD~~l~~~~ 74 (145)
T 3kyj_B 60 NVDLILLDIEMPVMD 74 (145)
T ss_dssp TCCEEEECTTSCCCT
T ss_pred CCCEEEEeCCCCCCC
Confidence 799999997666655
No 333
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=45.09 E-value=37 Score=18.55 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=23.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..|+++|+|--..+.|- ..+.+.+++.....+..+|++|..
T Consensus 58 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNG---IEFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp CCCSEEEEETTCTTSCH---HHHHHHHTTSGGGTTCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHcCccccCCcEEEEeCC
Confidence 57999999987777663 234444443321124555555543
No 334
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=44.98 E-value=46 Score=21.78 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=28.2
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-|- +.+|+....++.+.+.+...+.. +.||+..
T Consensus 40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 80 (276)
T 3rrv_A 40 IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITG 80 (276)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 35677775 99999999999999998865544 4455544
No 335
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=44.92 E-value=23 Score=22.44 Aligned_cols=58 Identities=12% Similarity=-0.021 Sum_probs=35.5
Q ss_pred HHHHHHHHHHH---hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEecCHHH
Q psy5634 9 QQRRVSFAVAL---MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD--GNKTVIITTHYIEE 67 (79)
Q Consensus 9 ~kqrv~laral---~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~--~g~tvi~~tH~~~~ 67 (79)
++..-.+.+++ ..+++++|+--+.+.+.... ..+++.+.+.... .+.++|+++|-.+.
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 44445566665 37888888776655665543 3445556554322 25789999996654
No 336
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=44.91 E-value=44 Score=20.95 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---------hcCCcEEEEEecC
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQIT---------KDGNKTVIITTHY 64 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~---------~~~g~tvi~~tH~ 64 (79)
+..++++||. ..+++.....+++.+.+.. ...+..+|++|+.
T Consensus 100 ~~~~l~lDEi-~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 100 DGGTLFLDEL-ATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TTSEEEEESG-GGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CCcEEEEech-HhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 5689999997 4577777777877766421 0124567777775
No 337
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=44.84 E-value=54 Score=21.25 Aligned_cols=38 Identities=13% Similarity=0.367 Sum_probs=27.7
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-| -+.||.....++.+.+.+...+.. +.||+..
T Consensus 21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 61 (267)
T 3r9t_A 21 VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTG 61 (267)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4567766 699999999999999998765544 3444443
No 338
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=44.64 E-value=23 Score=22.70 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=17.6
Q ss_pred HHHHHHHHHHH-HHhc--CCcEEEEEecCHH
Q psy5634 39 LRQSIWNHLVQ-ITKD--GNKTVIITTHYIE 66 (79)
Q Consensus 39 ~~~~i~~~l~~-~~~~--~g~tvi~~tH~~~ 66 (79)
...++...+.+ +.+. .+.+|++|||..-
T Consensus 161 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 191 (267)
T 2hhj_A 161 VLERLLPYWNERIAPEVLRGKTILISAHGNS 191 (267)
T ss_dssp HHHHHHHHHHHHTHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcCcHH
Confidence 34556666665 4321 4678999999753
No 339
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=44.61 E-value=35 Score=18.04 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=23.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++++|--..+.|- ..+.+.+++.. .+..+|++|.
T Consensus 45 ~~~~dlil~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~ 83 (120)
T 1tmy_A 45 ELKPDIVTMDITMPEMNG---IDAIKEIMKID--PNAKIIVCSA 83 (120)
T ss_dssp HHCCSEEEEECSCGGGCH---HHHHHHHHHHC--TTCCEEEEEC
T ss_pred hcCCCEEEEeCCCCCCcH---HHHHHHHHhhC--CCCeEEEEeC
Confidence 357999999987766653 34445555432 2344555443
No 340
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=44.52 E-value=54 Score=21.16 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=28.0
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGNK-TVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g~-tvi~~t 62 (79)
++-|+-| -+.++.....++.+.+.+...+... .||+..
T Consensus 21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 61 (265)
T 3rsi_A 21 ILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61 (265)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4667777 4999999999999999987655443 444444
No 341
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=44.50 E-value=64 Score=21.08 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHh-cCCcEEEEEecCHH
Q psy5634 14 SFAVALMHDPELLILDEPTVG----------VDPLLRQSIWNHLVQITK-DGNKTVIITTHYIE 66 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~~g----------lD~~~~~~i~~~l~~~~~-~~g~tvi~~tH~~~ 66 (79)
.+..+-..+|.++++||--+= ........++..+..... ..+..||.+|+..+
T Consensus 102 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 102 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp HHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred HHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 344555678999999996421 122334445444443322 23455666777654
No 342
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=44.47 E-value=70 Score=21.52 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHh--cCCcEEEEEecCHH
Q psy5634 14 SFAVALMHDPELLILDEPTVG----------VDPLLRQSIWNHLVQITK--DGNKTVIITTHYIE 66 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~~g----------lD~~~~~~i~~~l~~~~~--~~g~tvi~~tH~~~ 66 (79)
.+..+-..+|.+|++||--.- ........++..+..... .....||.+|+..+
T Consensus 199 ~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 199 LFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp HHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred HHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 334445568899999998321 122233344444443322 12345666777654
No 343
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=44.42 E-value=38 Score=18.48 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=24.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
-..|+++|+|--..+.|- ..+.+.+++........||++|..
T Consensus 49 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 49 KGFSGVVLLDIMMPGMDG---WDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp TCCCEEEEEESCCSSSCH---HHHHHHHHHTTCCTTEEEEEEECT
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhhcccCCCCEEEEECC
Confidence 357999999987777663 234444554211224566666544
No 344
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.36 E-value=35 Score=22.42 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=28.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+++++++||.- .+.....+.+...+.+.. ....+|+++...
T Consensus 109 ~~~~viiiDe~~-~l~~~~~~~L~~~le~~~--~~~~~il~~n~~ 150 (340)
T 1sxj_C 109 KGFKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYA 150 (340)
T ss_dssp CSCEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCG
T ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhcCC--CCeEEEEEecCc
Confidence 357999999974 456677777777776642 245667777654
No 345
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=44.23 E-value=60 Score=20.68 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=28.1
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| -+.+++....++.+.+.+...+.. +.||+..
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg 52 (250)
T 2a7k_A 12 VITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYG 52 (250)
T ss_dssp EEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 4557766 599999999999999988765544 4555554
No 346
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=44.20 E-value=57 Score=20.99 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=28.1
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
++-||-| .+.+++....++.+.+.+...+.+.-+|++|
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 58 (260)
T 1mj3_A 19 LIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLT 58 (260)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEE
Confidence 4667877 6999999999999999987655443444444
No 347
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=44.12 E-value=61 Score=20.77 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=28.3
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| -+.++.....++.+.+.+...+.. +.||+..
T Consensus 17 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 57 (258)
T 2pbp_A 17 IIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTG 57 (258)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 4567777 599999999999999998765544 4555544
No 348
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=43.92 E-value=21 Score=24.92 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 9 QQRRVSFAVALMHDPELLILDEPT-VGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 9 ~kqrv~laral~~~p~~lllDEP~-~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
+.+....+...+.+++++|+.... .++.... ..+.+.+. +.+..++++.+..+..
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~----~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY----RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT----TCCSCEEEEEECC---
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH----HcCCCEEEEEECccch
Confidence 677777788888889988887554 3455543 34444433 3467788887766544
No 349
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=43.83 E-value=39 Score=18.44 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=13.9
Q ss_pred cCCCEEEEeCCCCCCCH
Q psy5634 21 HDPELLILDEPTVGVDP 37 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~ 37 (79)
..|+++++|--..+.|-
T Consensus 61 ~~~dlvi~D~~l~~~~g 77 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDG 77 (149)
T ss_dssp CCCSEEEECSCCSSSCH
T ss_pred CCCcEEEEECCCCCCCH
Confidence 57999999988777763
No 350
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=43.76 E-value=38 Score=18.32 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=22.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
+|+++++|--..+.|- ..+.+.+++........||++|.
T Consensus 51 ~~dlvi~D~~~p~~~g---~~~~~~lr~~~~~~~~pii~~s~ 89 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNG---LDLVKKVRSDSRFKEIPIIMITA 89 (129)
T ss_dssp TCCEEEECSCCSSSCH---HHHHHHHHTSTTCTTCCEEEEES
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCeEEEEeC
Confidence 6999999977777763 33444444321112344555553
No 351
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=43.44 E-value=59 Score=20.99 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=28.4
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| .+.+++....++.+.+.+...+.. +.||+..
T Consensus 15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 55 (269)
T 1nzy_A 15 EITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG 55 (269)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEEC
Confidence 4567877 699999999999999998765544 4455544
No 352
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=43.37 E-value=42 Score=18.72 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=24.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
-..|+++|+|-...+.|-. .+.+.+++.. ....+|++|..
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~--~~~~ii~ls~~ 88 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGGE---VFLEQVAKSY--PDIERVVISGY 88 (154)
T ss_dssp TSCCSEEEEESSCSSSCHH---HHHHHHHHHC--TTSEEEEEECG
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHhC--CCCcEEEEecC
Confidence 3579999999888777642 3445555432 24556655543
No 353
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=43.29 E-value=51 Score=21.36 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=28.3
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-| -+.+|.....++.+.+.+...+.. +.||+..
T Consensus 23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 63 (274)
T 3tlf_A 23 TITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTG 63 (274)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeC
Confidence 4667877 499999999999999998765544 3455444
No 354
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=43.24 E-value=37 Score=17.98 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=23.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++++|--..+.|-. .+.+.+++ .....+|++|.
T Consensus 44 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~---~~~~~ii~~s~ 81 (122)
T 1zgz_A 44 NQSVDLILLDINLPDENGL---MLTRALRE---RSTVGIILVTG 81 (122)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHT---TCCCEEEEEES
T ss_pred cCCCCEEEEeCCCCCCChH---HHHHHHHh---cCCCCEEEEEC
Confidence 3579999999877777632 34444443 22455555554
No 355
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=43.15 E-value=1.1e+02 Score=23.54 Aligned_cols=51 Identities=4% Similarity=0.199 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEec
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTH 63 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-~g~tvi~~tH 63 (79)
.+++..+|+..|+++++=|-...++. ..+.+.+.+++.... .+.+||+++-
T Consensus 203 ~LAl~aglA~gAd~ilIPE~p~~~~~-~~~~v~~~i~~~~~~gk~~~IVvVaE 254 (766)
T 3o8o_B 203 WLALLAGIATSADYIFIPEKPATSSE-WQDQMCDIVSKHRSRGKRTTIVVVAE 254 (766)
T ss_dssp HHHHHHHHHHTCSEEECTTCCCCTTH-HHHHHHHHHHHHHHTTCCCEEEEEET
T ss_pred HHHHHHHHhcCCCEEEccCCCCChHH-HHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 47888999999999999876555653 345666666654322 2456777763
No 356
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=42.83 E-value=82 Score=21.85 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
.|+..+.+++.-+...+...++++.|+| +++... +...++.+.++.+..+|++-+
T Consensus 267 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~--~~s~~~---i~~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 267 KLTPEDWGKLTMAMGSLSNAGIYIDDTP--SIRVSD---IRAKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCEEEECCT--TCCHHH---HHHHHHHHHTTTCCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHHH---HHHHHHHHHHHcCCCEEEEcc
Confidence 3555666666656555666778887765 455433 334455554444666777653
No 357
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=42.78 E-value=62 Score=20.73 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=28.6
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEec
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITTH 63 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH 63 (79)
++-||-| .+.+++....++.+.+.+...+.. ..||+...
T Consensus 15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 56 (257)
T 2ej5_A 15 WLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGA 56 (257)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC
Confidence 4557766 699999999999999998765544 45555543
No 358
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=42.63 E-value=62 Score=20.97 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=28.1
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGNK-TVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g~-tvi~~t 62 (79)
++-|+-| .+.++.....++.+.+.+...+... .||+..
T Consensus 17 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 57 (266)
T 3fdu_A 17 TLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRG 57 (266)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 4567877 6999999999999999987655443 444443
No 359
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=42.29 E-value=61 Score=22.43 Aligned_cols=40 Identities=8% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
..|++++|-|.+|++. +.+.+.+. . ...++++|.+.....
T Consensus 356 ~fD~Vv~dPPr~g~~~-----~~~~l~~~--~-p~~ivyvsc~p~tla 395 (433)
T 1uwv_A 356 GFDKVLLDPARAGAAG-----VMQQIIKL--E-PIRIVYVSCNPATLA 395 (433)
T ss_dssp CCSEEEECCCTTCCHH-----HHHHHHHH--C-CSEEEEEESCHHHHH
T ss_pred CCCEEEECCCCccHHH-----HHHHHHhc--C-CCeEEEEECChHHHH
Confidence 4799999999999862 33334433 2 357899999987543
No 360
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=42.25 E-value=27 Score=22.47 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHh---cCCcEEEEEecCHH
Q psy5634 40 RQSIWNHLVQITK---DGNKTVIITTHYIE 66 (79)
Q Consensus 40 ~~~i~~~l~~~~~---~~g~tvi~~tH~~~ 66 (79)
..++...+.++.. ..+.+|++|||-.-
T Consensus 182 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 211 (274)
T 4emb_A 182 VARVIPYWTDEIAKEVLEGKKVIVAAHGNS 211 (274)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeCHHH
Confidence 3445555555432 24678999999653
No 361
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=42.08 E-value=17 Score=25.87 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=29.1
Q ss_pred HHHHHHHHh-----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 12 RVSFAVALM-----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 12 rv~laral~-----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
.+++..+|+ ..|+++++=|-...+ +.+.+.+++..++.+.+||+++
T Consensus 196 ~lAl~aglA~~~~~~gad~ilIPE~~f~~-----~~~~~~i~~~~~~~~~~iIvVa 246 (419)
T 3hno_A 196 WIAAAGGLASSPEREIPVVILFPEISFDK-----QKFLAKVDSCVKKFGYCSVVVS 246 (419)
T ss_dssp HHHHGGGGGCCSSSCCCEEEECTTSCCCH-----HHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHhcccCCCCceEEEeCCCCCCH-----HHHHHHHHHHHHhCCCEEEEEe
Confidence 467888898 589999886643333 3445555544333456777776
No 362
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=42.04 E-value=40 Score=20.46 Aligned_cols=27 Identities=11% Similarity=-0.053 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhc------CCcEEEEEecCH
Q psy5634 39 LRQSIWNHLVQITKD------GNKTVIITTHYI 65 (79)
Q Consensus 39 ~~~~i~~~l~~~~~~------~g~tvi~~tH~~ 65 (79)
..+.+...+.++.+. .+.+|++|||-.
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~~~~~vlvVsHg~ 145 (202)
T 3mxo_A 113 DGARIEAAFRNYIHRADARQEEDSYEIFICHAN 145 (202)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCSCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhhhccCCCceEEEEeCHH
Confidence 345566666666542 256899999964
No 363
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=41.99 E-value=41 Score=21.04 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=21.8
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
--..|+++|+|--..+. ..-++.+.+++ .....||+.|-
T Consensus 78 ~~~~~DlvllD~~lp~~---~G~~l~~~lr~---~~~~~iI~lt~ 116 (249)
T 3q9s_A 78 REDHPDLILLDLGLPDF---DGGDVVQRLRK---NSALPIIVLTA 116 (249)
T ss_dssp HHSCCSEEEEECCSCHH---HHHHHHHHHHT---TCCCCEEEEES
T ss_pred hcCCCCEEEEcCCCCCC---CHHHHHHHHHc---CCCCCEEEEEC
Confidence 34679999999765543 33444444543 22344544443
No 364
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=41.91 E-value=38 Score=17.77 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=13.2
Q ss_pred hcCCCEEEEeCCCCCCC
Q psy5634 20 MHDPELLILDEPTVGVD 36 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD 36 (79)
-.+|+++++|--..+.|
T Consensus 43 ~~~~dlvi~D~~l~~~~ 59 (121)
T 1zh2_A 43 TRKPDLIILDLGLPDGD 59 (121)
T ss_dssp HHCCSEEEEESEETTEE
T ss_pred cCCCCEEEEeCCCCCCc
Confidence 35799999997666655
No 365
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=41.86 E-value=43 Score=21.18 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 33 VGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 33 ~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
+|||+.....+.+++... +..|..+.+++=.
T Consensus 31 ~gLdp~~a~al~~m~~aA-~~~Gi~l~v~sGy 61 (179)
T 1xp2_A 31 GGMYKITSDKTRNVIKKM-AKEGIYLCVAQGY 61 (179)
T ss_dssp TTSCHHHHHHHHHHHHHH-HTTTCCEEEEECC
T ss_pred cCCCHHHHHHHHHHHHHH-HHcCCeEEEEEee
Confidence 699999999998888765 4557766655543
No 366
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=41.66 E-value=43 Score=18.32 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=23.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EecC
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII-TTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~-~tH~ 64 (79)
-..|+++++|--..+.|- ..+.+.+++.. .+..+|+ +++.
T Consensus 42 ~~~~dlvl~D~~lp~~~g---~~~~~~l~~~~--~~~~ii~~s~~~ 82 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTG---VDFLTEVRERW--PETVRIIITGYT 82 (139)
T ss_dssp HSCEEEEEEESCCSSSCH---HHHHHHHHHHC--TTSEEEEEESCT
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHHhC--CCCcEEEEeCCC
Confidence 357999999987777773 23444455432 2334444 4443
No 367
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=41.50 E-value=24 Score=25.17 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.1
Q ss_pred cCCCEEEEeCCCCCCC
Q psy5634 21 HDPELLILDEPTVGVD 36 (79)
Q Consensus 21 ~~p~~lllDEP~~glD 36 (79)
...|.+++|=|++|.-
T Consensus 174 ~~FD~Il~DaPCSg~G 189 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEG 189 (456)
T ss_dssp TCEEEEEEECCCCCGG
T ss_pred ccCCEEEECCCCCCcc
Confidence 3469999999998864
No 368
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=41.47 E-value=42 Score=18.09 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=23.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEecC
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNK-TVIITTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~-tvi~~tH~ 64 (79)
-.+|+++++|--..+.|- ..+.+.+++.. .... .++++++.
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~~~~~l~~~~-~~~~~ii~ls~~~ 87 (130)
T 1dz3_A 46 EKRPDILLLDIIMPHLDG---LAVLERIRAGF-EHQPNVIMLTAFG 87 (130)
T ss_dssp HHCCSEEEEESCCSSSCH---HHHHHHHHHHC-SSCCEEEEEEETT
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHhcC-CCCCcEEEEecCC
Confidence 357999999987777763 23445555421 1233 44455554
No 369
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=41.37 E-value=38 Score=21.87 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=10.5
Q ss_pred cCCCEEEEeCCCC
Q psy5634 21 HDPELLILDEPTV 33 (79)
Q Consensus 21 ~~p~~lllDEP~~ 33 (79)
.+.++++|||...
T Consensus 102 ~~~kIiiLDEad~ 114 (212)
T 1tue_A 102 TDTKVAMLDDATT 114 (212)
T ss_dssp TTCSSEEEEEECH
T ss_pred CCCCEEEEECCCc
Confidence 3678999999863
No 370
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=41.26 E-value=68 Score=20.46 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=28.6
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEec
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITTH 63 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH 63 (79)
++-||-| .+.+++....++.+.+.+..++.. +.||+...
T Consensus 11 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 52 (253)
T 1uiy_A 11 VVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGR 52 (253)
T ss_dssp EEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 4557877 599999999999999988765444 45555543
No 371
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A
Probab=41.26 E-value=66 Score=20.49 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=27.2
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| .+.+++....++.+.+.+..++.. +.||+..
T Consensus 15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 55 (243)
T 2q35_A 15 QITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTG 55 (243)
T ss_dssp EEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4566766 699999999999999988765444 3444443
No 372
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=41.24 E-value=29 Score=21.92 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHh---cCCcEEEEEecCHH
Q psy5634 39 LRQSIWNHLVQITK---DGNKTVIITTHYIE 66 (79)
Q Consensus 39 ~~~~i~~~l~~~~~---~~g~tvi~~tH~~~ 66 (79)
...++...+.++.. ..+.+|++|||..-
T Consensus 165 ~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 195 (258)
T 3kkk_A 165 TVERVLPFWFDHIAPDILANKKVMVAAHGNS 195 (258)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCEEEEEcCHHH
Confidence 34455565555322 24678999999753
No 373
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=41.22 E-value=70 Score=20.62 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=27.8
Q ss_pred EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEPT-VGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP~-~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-|- +.+++....++.+.+.+...+.. +.||+..
T Consensus 19 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 58 (263)
T 3l3s_A 19 TLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHG 58 (263)
T ss_dssp EEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 46677665 99999999999999998765544 3444443
No 374
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=41.18 E-value=50 Score=18.90 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 44 WNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 44 ~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
...+.++.+ .+..++++.|..+...
T Consensus 98 ~~~~~~~~~-~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 98 LYLTLQLME-MGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHHHHHHH-TTCCEEEEEECHHHHH
T ss_pred HHHHHHHHh-cCCCEEEEEEchHhcc
Confidence 334444433 4788999999988754
No 375
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=41.14 E-value=53 Score=22.82 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=31.7
Q ss_pred HHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 16 AVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 16 aral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.+|+-.+. -+++.|+-+..-|+..+..+.. |.+.+++.|..|.++|.+-+.
T Consensus 306 ~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~-L~e~v~~~Gg~V~ivs~~~e~ 358 (386)
T 2vgn_A 306 VKAAEYGAISYLLLTDKVLHSDNIAQREEYLK-LMDSVESNGGKALVLSTLHSL 358 (386)
T ss_dssp HHHHHTTCEEEEEEETTGGGSSCHHHHHHHHH-HHHHHHHTTCEEEEECTTSHH
T ss_pred HHHHHcCCcEEEEEechhhcCCCchhhhHHHH-HHHHHHHcCCEEEEECCCCcc
Confidence 34444444 4666677666668877777544 444455667788888876443
No 376
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=41.10 E-value=42 Score=18.02 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=19.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
-.+|+++|+|-...+.| ...+.+.+++.. ..-..++++++.
T Consensus 49 ~~~~dlvi~d~~l~~~~---g~~~~~~l~~~~-~~~~ii~~t~~~ 89 (130)
T 3eod_A 49 GFTPDLMICDIAMPRMN---GLKLLEHIRNRG-DQTPVLVISATE 89 (130)
T ss_dssp TCCCSEEEECCC--------CHHHHHHHHHTT-CCCCEEEEECCC
T ss_pred cCCCCEEEEecCCCCCC---HHHHHHHHHhcC-CCCCEEEEEcCC
Confidence 45799999997665544 233444455432 222344444443
No 377
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=40.88 E-value=51 Score=19.94 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=22.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEecCHHH
Q psy5634 23 PELLILDEPTVGVDPLLRQSIWNHLVQIT-KDGNKTVIITTHYIEE 67 (79)
Q Consensus 23 p~~lllDEP~~glD~~~~~~i~~~l~~~~-~~~g~tvi~~tH~~~~ 67 (79)
+++-..|+-+.+-|+. .+.+.+.++. ...+.++++|+|+...
T Consensus 72 ~~~~~~~~L~~~~~~~---~~~~~l~~~~~~~~~~~vllVgH~P~l 114 (172)
T 3f2i_A 72 CQLEESNHLAPNGNIF---NWLDYWLKPKNFPENAQIAIVGHEPCL 114 (172)
T ss_dssp SCEEECGGGSTTCCHH---HHHHHTHHHHCCCTTCEEEEEECTTHH
T ss_pred CCeEECcccCCccCHH---HHHHHHHHhccCCCCCEEEEEeCChHH
Confidence 3444444433344433 3334444332 1346799999999754
No 378
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=40.70 E-value=55 Score=19.23 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 9 QQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 9 ~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
+.|+-.+- ..+.+..+++-|+- +|.+ ..+..+.+++... +.+..-+|++.+
T Consensus 21 ~~Q~~~l~-~~~~g~~~i~~D~~-SG~~-~~Rp~l~~ll~~~-~~g~id~vvv~~ 71 (143)
T 3ilx_A 21 ANQVKYLE-EQVKEYDLVITDIG-SGLN-MKRKGFLKLLRMI-LNNEVSRVITAY 71 (143)
T ss_dssp HHHHHHHH-HHCSCCSEEEEEES-CTTC-TTCHHHHHHHHHH-HTTCEEEEEESS
T ss_pred HHHHHHHH-HHhCCCeEEEEcCc-cccc-CCcHHHHHHHHHH-HhCCCCEEEEEe
Confidence 34544443 34447777666666 8887 4567777776665 443344555554
No 379
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=40.63 E-value=73 Score=20.66 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=28.2
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-| -+.++.....++.+.+.+...+.. +.||++.
T Consensus 16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 56 (268)
T 3i47_A 16 LLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKA 56 (268)
T ss_dssp EEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEEC
Confidence 4667877 489999999999999998765544 4555544
No 380
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18
Probab=40.53 E-value=63 Score=20.72 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=36.8
Q ss_pred HHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecCHH
Q psy5634 15 FAVALMHD-PELLILDEPTVGVDPLLRQSIWNHLVQITKDG-NKTVIITTHYIE 66 (79)
Q Consensus 15 laral~~~-p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~-g~tvi~~tH~~~ 66 (79)
++..|..+ -+++.+|-|..|-.....+.+.+.+.+..+.. ..-++++.|.+-
T Consensus 31 ~~~~L~~~G~~v~~~d~~g~g~s~~~~~~~~~~i~~~~~~~~~~~v~lvGhS~G 84 (285)
T 1ex9_A 31 IPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHG 84 (285)
T ss_dssp HHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHHHHHHHCCSCEEEEEETTH
T ss_pred HHHHHHhCCCEEEEEeCCCCCCchhhHHHHHHHHHHHHHHhCCCCEEEEEECHh
Confidence 44556554 79999999998888766666666666654332 356888999874
No 381
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=40.35 E-value=62 Score=20.74 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=28.4
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-| .+.+|+....++.+.+.+..++.. +.||+..
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg 52 (254)
T 3gow_A 12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTG 52 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 4667877 489999999999999998765544 4455544
No 382
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=40.29 E-value=42 Score=17.77 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++++|--..+.|-. .+.+.+++. .+..+|++|.
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~---~~~~ii~~s~ 82 (123)
T 1xhf_A 45 EYDINLVIMDINLPGKNGL---LLARELREQ---ANVALMFLTG 82 (123)
T ss_dssp HSCCSEEEECSSCSSSCHH---HHHHHHHHH---CCCEEEEEES
T ss_pred cCCCCEEEEcCCCCCCCHH---HHHHHHHhC---CCCcEEEEEC
Confidence 3579999999877777642 344445543 2455555544
No 383
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=40.19 E-value=43 Score=17.83 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=38.4
Q ss_pred HHHHHhcCC-CEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 15 FAVALMHDP-ELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 15 laral~~~p-~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
+...+...+ +.+++| .-...+|......+....++.. +.|..+.++.-....
T Consensus 35 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~~v 88 (110)
T 1sbo_A 35 LRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAK-INGKEFILSSLKESI 88 (110)
T ss_dssp HHTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHH-HTTCEEEEESCCHHH
T ss_pred HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 334444454 789999 8899999999999998887764 457788887665543
No 384
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0
Probab=39.53 E-value=67 Score=20.74 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=28.2
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-|- +.+|.....++.+.+.+..++.. +.||+..
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 59 (265)
T 3qxz_A 19 VLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTG 59 (265)
T ss_dssp EEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 46677774 89999999999999998865544 4445444
No 385
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=39.51 E-value=63 Score=21.08 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=28.3
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| .+.+|+....++.+.+.+..++.. +.||+..
T Consensus 32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 72 (279)
T 3t3w_A 32 TITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRA 72 (279)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 4667877 499999999999999998765544 3445444
No 386
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=39.23 E-value=55 Score=18.84 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 38 LLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 38 ~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
...+++.+.|+++.++.+..||++|.+.
T Consensus 31 t~~ee~~~~~~~l~~~~digIIlIte~i 58 (111)
T 2qai_A 31 ESVERARNKLRELLERDDVGIILITERL 58 (111)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEEHHH
T ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcHHH
Confidence 3446777888888776688999999653
No 387
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=39.19 E-value=45 Score=20.87 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcC--CcEEEEEecCHH
Q psy5634 40 RQSIWNHLVQITKDG--NKTVIITTHYIE 66 (79)
Q Consensus 40 ~~~i~~~l~~~~~~~--g~tvi~~tH~~~ 66 (79)
.+++...+.++.++. +.+|++|||..-
T Consensus 138 ~~Rv~~~l~~l~~~~~~~~~vlvVsHg~~ 166 (219)
T 2qni_A 138 QARIVEAVKAVLDRHDARQPIAFVGHGGV 166 (219)
T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeCHHH
Confidence 344556666665432 258999999753
No 388
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}
Probab=39.17 E-value=66 Score=20.71 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=28.1
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| -+.++.....++.+.+.+...+.. +.||+..
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 59 (256)
T 3trr_A 19 LITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITG 59 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 4667777 489999999999999998765544 4455544
No 389
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=39.10 E-value=17 Score=22.26 Aligned_cols=43 Identities=7% Similarity=0.003 Sum_probs=23.1
Q ss_pred CCEEEEeCCCCCCCHHH-----------------HHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 23 PELLILDEPTVGVDPLL-----------------RQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 23 p~~lllDEP~~glD~~~-----------------~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
-|+++.+-|+...+... ...+++.+.+..+.+|.-++++.|..
T Consensus 124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 183 (230)
T 3evz_A 124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE 183 (230)
T ss_dssp EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH
T ss_pred eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH
Confidence 47888887765433211 14455555555566566666667764
No 390
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=39.08 E-value=66 Score=20.58 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=27.8
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-|- +.+++....++.+.+.+...+.. +.||+..
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 58 (256)
T 3qmj_A 18 TLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTG 58 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 46678774 89999999999999988765544 3444433
No 391
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=38.72 E-value=76 Score=20.46 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=28.2
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEec
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITTH 63 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH 63 (79)
++-|+-| -+.+++....++.+.+.+...+.. +.||+...
T Consensus 16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 57 (263)
T 3lke_A 16 YITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSK 57 (263)
T ss_dssp EEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEES
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcC
Confidence 4556766 699999999999999998765444 45555443
No 392
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Probab=38.66 E-value=67 Score=20.78 Aligned_cols=38 Identities=13% Similarity=0.354 Sum_probs=28.1
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-| -+.++.....++.+.+.+...+.. +.||+..
T Consensus 27 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 67 (265)
T 3qxi_A 27 IITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTG 67 (265)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 4667777 489999999999999998765544 4455544
No 393
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=38.62 E-value=63 Score=19.79 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=29.3
Q ss_pred hcCCCEEEEeCCCCCCCH-------------------HHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 20 MHDPELLILDEPTVGVDP-------------------LLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~-------------------~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
+.+|+++++|=|..---+ ..++.+.+.+.++. +.|..||++.-..+.
T Consensus 25 i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~-~~g~nVVl~~k~I~d 90 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDII-QLKPDVVITEKGISD 90 (178)
T ss_dssp EESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHH-TTCCSEEEESSCBCH
T ss_pred cccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHh-hcCCcEEEECCcccH
Confidence 368999999977543211 13344566666664 457888888765543
No 394
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=38.60 E-value=52 Score=18.36 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=23.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
..|+++++|-...+.+.. .+.+.+++.. .+..+|++|.
T Consensus 46 ~~~dliild~~l~~~~g~---~~~~~l~~~~--~~~pii~ls~ 83 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDGL---ALFRKILALD--PDLPMILVTG 83 (155)
T ss_dssp TCCSEEEEESCCSSSCHH---HHHHHHHHHC--TTSCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhhC--CCCCEEEEEC
Confidence 469999999877776632 4445555432 2445555554
No 395
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=38.56 E-value=76 Score=23.82 Aligned_cols=28 Identities=25% Similarity=0.138 Sum_probs=21.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQI 50 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~ 50 (79)
+-+++++||- --+|......+..++...
T Consensus 318 ~l~~lVlDEA-H~l~~~~~~~l~~Il~~l 345 (666)
T 3o8b_A 318 AYDIIICDEC-HSTDSTTILGIGTVLDQA 345 (666)
T ss_dssp SCSEEEETTT-TCCSHHHHHHHHHHHHHT
T ss_pred cccEEEEccc-hhcCccHHHHHHHHHHhh
Confidence 4789999999 889988776666655544
No 396
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=38.55 E-value=39 Score=21.68 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=17.3
Q ss_pred HHHHHHHHHHH-HHh--cCCcEEEEEecCHH
Q psy5634 39 LRQSIWNHLVQ-ITK--DGNKTVIITTHYIE 66 (79)
Q Consensus 39 ~~~~i~~~l~~-~~~--~~g~tvi~~tH~~~ 66 (79)
..+++...+.+ +.. ..+.+|++|||..-
T Consensus 174 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 204 (267)
T 3d8h_A 174 TVERVKPYFEDVIAPSIMSGKSVLVSAHGNS 204 (267)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEEeCHHH
Confidence 34455565655 332 24678999999753
No 397
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=38.41 E-value=39 Score=21.84 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=16.7
Q ss_pred HHHHHHHHHH-HHh--cCCcEEEEEecCHH
Q psy5634 40 RQSIWNHLVQ-ITK--DGNKTVIITTHYIE 66 (79)
Q Consensus 40 ~~~i~~~l~~-~~~--~~g~tvi~~tH~~~ 66 (79)
..++...+.+ +.. ..+.+|++|||..-
T Consensus 157 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 186 (265)
T 1rii_A 157 VARFLPYFTDVIVGDLRVGKTVLIVAHGNS 186 (265)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEeChHH
Confidence 4445555555 322 24679999999753
No 398
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=38.27 E-value=77 Score=20.21 Aligned_cols=49 Identities=8% Similarity=0.108 Sum_probs=33.1
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 17 VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 17 ral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
.+...+.+++++|-. ..++|....++.+.++ +.|..++...|+.+++..
T Consensus 96 ~~~~aGad~I~l~~~-~~~~p~~l~~~i~~~~----~~g~~v~~~v~t~eea~~ 144 (229)
T 3q58_A 96 ALAQAGADIIAFDAS-FRSRPVDIDSLLTRIR----LHGLLAMADCSTVNEGIS 144 (229)
T ss_dssp HHHHHTCSEEEEECC-SSCCSSCHHHHHHHHH----HTTCEEEEECSSHHHHHH
T ss_pred HHHHcCCCEEEECcc-ccCChHHHHHHHHHHH----HCCCEEEEecCCHHHHHH
Confidence 456779999999965 4455644444444333 347888888999988754
No 399
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=38.22 E-value=73 Score=21.61 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=27.8
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCCc-EEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGNK-TVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g~-tvi~~t 62 (79)
+|-|+-|- +.+++....++.+.+.+...+... .||++.
T Consensus 69 ~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG 109 (334)
T 3t8b_A 69 RVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTG 109 (334)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeC
Confidence 46677774 999999999999999987655443 444443
No 400
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=37.89 E-value=93 Score=21.08 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=18.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
-..|+++|+|=-..++|-. ++.+.+++
T Consensus 43 ~~~~dlvllD~~mp~~~G~---~~~~~l~~ 69 (459)
T 1w25_A 43 RDLPDIILLDVMMPGMDGF---TVCRKLKD 69 (459)
T ss_dssp HHCCSEEEEESCCSSSCHH---HHHHHHHH
T ss_pred cCCCCEEEEcCCCCCCCHH---HHHHHHhc
Confidence 3579999999888777742 34444554
No 401
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=37.89 E-value=45 Score=21.32 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=28.1
Q ss_pred EEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEe
Q psy5634 25 LLILDE--PTVGVDPLLRQSIWNHLVQITKDGNK-TVIITT 62 (79)
Q Consensus 25 ~lllDE--P~~glD~~~~~~i~~~l~~~~~~~g~-tvi~~t 62 (79)
+|-||- +-+.|++....++.+.+.+..++... .||+..
T Consensus 12 ~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg 52 (254)
T 3hrx_A 12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTG 52 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 456674 47999999999999999988665554 445444
No 402
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=37.86 E-value=53 Score=18.24 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=17.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
..|+++|+|--..+.| ...+.+.+++.. .+..+|++|.
T Consensus 49 ~~~dlvi~d~~l~~~~---g~~~~~~l~~~~--~~~~ii~ls~ 86 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAE---AIDGLVRLKRFD--PSNAVALISG 86 (154)
T ss_dssp CCCSEEEECC---------CHHHHHHHHHHC--TTSEEEEC--
T ss_pred CCCCEEEEeCCCCCCc---hHHHHHHHHHhC--CCCeEEEEeC
Confidence 5699999997655443 233445455432 2445555554
No 403
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=37.72 E-value=67 Score=20.74 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=28.5
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEec
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGN-KTVIITTH 63 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH 63 (79)
++-|+-|- +.++.....++.+.+.+..++.. +.||+...
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~ 62 (256)
T 3pe8_A 21 TLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGA 62 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEES
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC
Confidence 35677774 89999999999999998865544 45555543
No 404
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=37.62 E-value=73 Score=19.80 Aligned_cols=39 Identities=21% Similarity=0.095 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy5634 10 QRRVSFAVALMH---DPELLILDEPTVGVDPLLRQSIWNHLVQI 50 (79)
Q Consensus 10 kqrv~laral~~---~p~~lllDEP~~glD~~~~~~i~~~l~~~ 50 (79)
.+|+++..||.. +-++++.|+- .++..-...+.++|..+
T Consensus 73 ~rrlAl~sALs~k~~~~~lvVvd~~--~~~~~KTK~~~~~l~~l 114 (175)
T 2ftc_D 73 VRALGLKVALTVKLAQDDLHIMDSL--ELPTGDPQYLTELAHYR 114 (175)
T ss_pred HHHHHHHHHHHHhccCCCEEEEecc--cCCCCCHHHHHHHHHHC
Confidence 467888887764 4579998874 33434455666777665
No 405
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=37.60 E-value=35 Score=21.02 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 41 QSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 41 ~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
..+.+.+.+.. +...+++++.|++..
T Consensus 99 ~~~l~~i~~~~-~~~~~vllvGHnP~l 124 (186)
T 4hbz_A 99 DEILAEVAAVP-ADASTVLVVGHAPTI 124 (186)
T ss_dssp HHHHHHHHTSC-TTCSEEEEEECTTHH
T ss_pred HHHHHHHHhcc-CCCCeeeecccCCCH
Confidence 34556566553 346799999999754
No 406
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=37.46 E-value=64 Score=19.07 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=23.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
-.+|+++|+|--..+.|-. .+.+.+++.. . ...|+++++.
T Consensus 56 ~~~~dlvi~D~~~p~~~g~---~~~~~l~~~~-~-~pii~lt~~~ 95 (205)
T 1s8n_A 56 LHKPDLVIMDVKMPRRDGI---DAASEIASKR-I-APIVVLTAFS 95 (205)
T ss_dssp HHCCSEEEEESSCSSSCHH---HHHHHHHHTT-C-SCEEEEEEGG
T ss_pred hcCCCEEEEeCCCCCCChH---HHHHHHHhcC-C-CCEEEEecCC
Confidence 3579999999877777642 3444454431 1 2345555554
No 407
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=37.17 E-value=90 Score=20.68 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=36.3
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh
Q psy5634 15 FAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQA 71 (79)
Q Consensus 15 laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~ 71 (79)
+..+...+.+.++|+=. .|++.....+.+. +++.|..+++-.|+.+++..+
T Consensus 135 i~ea~~~GAD~VlLi~a--~L~~~~l~~l~~~----a~~lGl~~lvevh~~eEl~~A 185 (272)
T 3tsm_A 135 VYEARSWGADCILIIMA--SVDDDLAKELEDT----AFALGMDALIEVHDEAEMERA 185 (272)
T ss_dssp HHHHHHTTCSEEEEETT--TSCHHHHHHHHHH----HHHTTCEEEEEECSHHHHHHH
T ss_pred HHHHHHcCCCEEEEccc--ccCHHHHHHHHHH----HHHcCCeEEEEeCCHHHHHHH
Confidence 55677889999999754 5676544444433 344589999999999988653
No 408
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=37.15 E-value=55 Score=18.19 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=23.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++|+|--..+.|- ..+.+.+++.. ....||++|-
T Consensus 59 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~ 97 (152)
T 3eul_A 59 AHLPDVALLDYRMPGMDG---AQVAAAVRSYE--LPTRVLLISA 97 (152)
T ss_dssp HHCCSEEEEETTCSSSCH---HHHHHHHHHTT--CSCEEEEEES
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CCCeEEEEEc
Confidence 368999999987777763 33444455432 2344555444
No 409
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=37.10 E-value=82 Score=20.43 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=28.0
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-| .+.++.....++.+.+.+..++.. +.||+..
T Consensus 32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 72 (278)
T 4f47_A 32 IVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTG 72 (278)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEC
Confidence 4567766 499999999999999998765544 3455544
No 410
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=37.09 E-value=80 Score=20.88 Aligned_cols=38 Identities=11% Similarity=0.296 Sum_probs=28.0
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-|- +.+++....++.+.+.+...+.. +.||+..
T Consensus 42 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 82 (298)
T 3qre_A 42 IITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTG 82 (298)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 46677764 89999999999999998865544 4455443
No 411
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=37.04 E-value=55 Score=18.18 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=24.0
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
--.+|+++|+|--..+.|- ..+.+.+++.. .+..||++|.
T Consensus 63 ~~~~~dlii~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~ls~ 102 (150)
T 4e7p_A 63 EKESVDIAILDVEMPVKTG---LEVLEWIRSEK--LETKVVVVTT 102 (150)
T ss_dssp TTSCCSEEEECSSCSSSCH---HHHHHHHHHTT--CSCEEEEEES
T ss_pred hccCCCEEEEeCCCCCCcH---HHHHHHHHHhC--CCCeEEEEeC
Confidence 3467999999987777663 33444455432 2345555554
No 412
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*
Probab=36.71 E-value=70 Score=20.93 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=27.5
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCCc-EEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGNK-TVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g~-tvi~~t 62 (79)
++-|+-|- +.++.....++.+.+.+...+... .||+..
T Consensus 37 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 77 (278)
T 3h81_A 37 IITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITG 77 (278)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEEC
Confidence 45677664 899999999999999887654443 444444
No 413
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=36.68 E-value=71 Score=20.63 Aligned_cols=38 Identities=16% Similarity=0.398 Sum_probs=28.3
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| .+.+++....++.+.+.+..++.. +.||+..
T Consensus 16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 56 (275)
T 1dci_A 16 HVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSG 56 (275)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4678877 599999999999999988765444 4455443
No 414
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=36.56 E-value=75 Score=20.46 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=28.3
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-|- +.+++....++.+.+.+...+.. +.||+..
T Consensus 23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 63 (267)
T 3oc7_A 23 RLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAH 63 (267)
T ss_dssp EEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 56778774 89999999999999998865544 3444443
No 415
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=36.46 E-value=88 Score=20.35 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=28.5
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGNK-TVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g~-tvi~~t 62 (79)
.|-||-| .+.|+.....++.+.+.+..++... .||+..
T Consensus 27 ~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg 67 (274)
T 4fzw_C 27 TLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTG 67 (274)
T ss_dssp EEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4567877 4899999999999999988665553 455544
No 416
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=36.36 E-value=51 Score=19.38 Aligned_cols=38 Identities=11% Similarity=-0.056 Sum_probs=22.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++|+|-...+.|- . +.+.++... ....||++|.
T Consensus 50 ~~~~dlvl~D~~mp~~~g---~-l~~~~~~~~--~~~~ii~lt~ 87 (196)
T 1qo0_D 50 DVPVDVVFTSIFQNRHHD---E-IAALLAAGT--PRTTLVALVE 87 (196)
T ss_dssp SSCCSEEEEECCSSTHHH---H-HHHHHHHSC--TTCEEEEEEC
T ss_pred CCCCCEEEEeCCCCccch---H-HHHHHhccC--CCCCEEEEEc
Confidence 457999999987766651 2 444444321 3455665554
No 417
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=36.33 E-value=87 Score=20.31 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=27.4
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
++-|+-| -+.++.....++.+.+.+...+...-+|++|
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 60 (276)
T 2j5i_A 21 FVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLT 60 (276)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEE
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 3557776 5999999999999999887654454444444
No 418
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=36.32 E-value=53 Score=17.78 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=23.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++|+|--..+.|- ..+.+.+++.. .+..+|++|.
T Consensus 49 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~ 87 (137)
T 3hdg_A 49 LHAPDVIITDIRMPKLGG---LEMLDRIKAGG--AKPYVIVISA 87 (137)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHTT--CCCEEEECCC
T ss_pred ccCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CCCcEEEEec
Confidence 358999999987777663 23444455432 2445555554
No 419
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=36.32 E-value=73 Score=19.38 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=23.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 23 PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 23 p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
-..+++| +|.+......+.+.+.+.. ......|++||.
T Consensus 50 ~~~iliD---~G~~~~~~~~~~~~l~~~~-~~~i~~ii~TH~ 87 (227)
T 1mqo_A 50 KGLVLVD---SSWDDKLTKELIEMVEKKF-QKRVTDVIITHA 87 (227)
T ss_dssp TEEEEES---CCSSHHHHHHHHHHHHHHH-TSCEEEEECCCC
T ss_pred CeEEEEE---CCCChHHHHHHHHHHHHhc-CCCceEEEeCCC
Confidence 3567777 3445544456666666542 235778889983
No 420
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=36.24 E-value=51 Score=17.59 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=22.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++++|--..+.|- ..+.+.+++.. .+..+|++|.
T Consensus 45 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~ 83 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSG---VELLRNLGDLK--INIPSIVITG 83 (126)
T ss_dssp GCCSEEEEEECCSTTSCH---HHHHHHHHHTT--CCCCEEEEEC
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHHhcC--CCCCEEEEEC
Confidence 357999999987777663 23444455432 2344555444
No 421
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=36.24 E-value=58 Score=18.26 Aligned_cols=52 Identities=13% Similarity=0.018 Sum_probs=39.1
Q ss_pred HHHH-HHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 14 SFAV-ALMHDPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 14 ~lar-al~~~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
.+.. ++..+++.+++| +....+|......+....++..+ .|..+.++.=...
T Consensus 42 ~l~~~~~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~-~g~~l~l~~~~~~ 95 (125)
T 2ka5_A 42 WVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISS-SGGFFALVSPNEK 95 (125)
T ss_dssp HHHHHTTTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHH-HTCEEEEECCCHH
T ss_pred HHHHHHhhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 3444 344578899999 88999999999999888877654 4777877765543
No 422
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=36.22 E-value=72 Score=20.94 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=28.2
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-|- +.+|+....++.+.+.+...+.. +.||+..
T Consensus 38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 78 (286)
T 3myb_A 38 TLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAA 78 (286)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEEC
Confidence 56678774 89999999999999998765444 4455544
No 423
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=36.21 E-value=11 Score=24.35 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHhcCC--------------CEEEEeCCCC-CCCHH
Q psy5634 5 SRGGQQRRVSFAVALMHDP--------------ELLILDEPTV-GVDPL 38 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p--------------~~lllDEP~~-glD~~ 38 (79)
+-+|+.|.-++.++|-.+. ..+++||.++ .|+..
T Consensus 202 va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~ 250 (266)
T 1fs5_A 202 LVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVK 250 (266)
T ss_dssp EECSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHH
T ss_pred EecChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccc
Confidence 3568888888888876543 5799999987 56544
No 424
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=36.16 E-value=53 Score=17.80 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=23.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++|+|--..+.|- .++.+.+++. ..+..+|++|.
T Consensus 47 ~~~~dlvilD~~lp~~~g---~~~~~~l~~~--~~~~~ii~ls~ 85 (133)
T 3b2n_A 47 EYNPNVVILDIEMPGMTG---LEVLAEIRKK--HLNIKVIIVTT 85 (133)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHT--TCSCEEEEEES
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHHH--CCCCcEEEEec
Confidence 357999999977767663 2344445542 22455555554
No 425
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=36.00 E-value=54 Score=17.81 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=22.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
..|+++|+|--..+.|-. .+.+.+++. ..+..+|++|
T Consensus 59 ~~~dlvilD~~l~~~~g~---~~~~~l~~~--~~~~~ii~ls 95 (138)
T 2b4a_A 59 STCDLLIVSDQLVDLSIF---SLLDIVKEQ--TKQPSVLILT 95 (138)
T ss_dssp GSCSEEEEETTCTTSCHH---HHHHHHTTS--SSCCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhh--CCCCCEEEEE
Confidence 579999999877776632 334444432 2245666666
No 426
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=35.96 E-value=82 Score=20.67 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=28.7
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEec
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITTH 63 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH 63 (79)
++-|+-| -+.++.....++.+.+.+...+.. +.||+...
T Consensus 36 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 77 (290)
T 3sll_A 36 LVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGA 77 (290)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEES
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECC
Confidence 4667877 499999999999999988765444 45555543
No 427
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=35.91 E-value=55 Score=17.84 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=21.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++++|- ..+. ....+.+.+++.. .+..+|++|.
T Consensus 46 ~~~~dlvi~d~-~~~~---~g~~~~~~l~~~~--~~~pii~ls~ 83 (142)
T 2qxy_A 46 REKIDLVFVDV-FEGE---ESLNLIRRIREEF--PDTKVAVLSA 83 (142)
T ss_dssp TSCCSEEEEEC-TTTH---HHHHHHHHHHHHC--TTCEEEEEES
T ss_pred ccCCCEEEEeC-CCCC---cHHHHHHHHHHHC--CCCCEEEEEC
Confidence 35799999997 5443 2344555555432 2455555554
No 428
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=35.73 E-value=13 Score=24.59 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHhcCC--------------CEEEEeCCCC-CCCHH
Q psy5634 5 SRGGQQRRVSFAVALMHDP--------------ELLILDEPTV-GVDPL 38 (79)
Q Consensus 5 lS~G~kqrv~laral~~~p--------------~~lllDEP~~-glD~~ 38 (79)
+-+|..|.-++.++|-.+. -.+++||.++ .|+..
T Consensus 202 la~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~ 250 (289)
T 1ne7_A 202 LITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVK 250 (289)
T ss_dssp EECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHH
T ss_pred EEcCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccc
Confidence 3467778888888877554 3899999987 56543
No 429
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=35.39 E-value=74 Score=20.67 Aligned_cols=38 Identities=8% Similarity=0.215 Sum_probs=28.2
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| .+.+|.....++.+.+.+...+.. +.||+..
T Consensus 29 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 69 (279)
T 3g64_A 29 TVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAG 69 (279)
T ss_dssp EEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4667777 489999999999999998765544 4455544
No 430
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=35.12 E-value=90 Score=20.08 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=28.1
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-| .+.++.....++.+.+.+...+.. +.||+..
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 61 (265)
T 3swx_A 21 VIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYG 61 (265)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 4667777 589999999999999988765544 3455544
No 431
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=35.11 E-value=42 Score=22.73 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=24.6
Q ss_pred CCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 22 DPELLILDEPTVGVDPL-------LRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~-------~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..|++++|-|..+.+.. ....++....+..+. |..+++++..
T Consensus 279 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~ 327 (382)
T 1wxx_A 279 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE-GGILATASCS 327 (382)
T ss_dssp CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE-EEEEEEEECC
T ss_pred CeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECC
Confidence 56999999999887642 222333333444444 4456666543
No 432
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A
Probab=34.72 E-value=85 Score=20.28 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=28.0
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-| -+.++.....++.+.+.+..++.. +.||+..
T Consensus 23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 63 (262)
T 3r9q_A 23 TVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWG 63 (262)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4667777 499999999999999998765544 3445444
No 433
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=34.71 E-value=68 Score=18.60 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=35.4
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
+..-+.-+.||-=.+.|++..+..+.++...+....+..|.+..|-
T Consensus 25 ~~~~~~~i~F~~~sa~L~~~~~~~L~~ia~~L~~~p~~~i~I~Ght 70 (134)
T 2aiz_P 25 LQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNT 70 (134)
T ss_dssp HTTTSCEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred hhcCcceEEecCCCceeCHHHHHHHHHHHHHHHHCCCceEEEEEEE
Confidence 6667888899988999999998888776665544445678888884
No 434
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=34.69 E-value=56 Score=17.59 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=23.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++++|-...+.|- ..+.+.+++.. ....+|++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~ 83 (136)
T 1mvo_A 45 TEKPDLIVLDVMLPKLDG---IEVCKQLRQQK--LMFPILMLTA 83 (136)
T ss_dssp HHCCSEEEEESSCSSSCH---HHHHHHHHHTT--CCCCEEEEEC
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHcCC--CCCCEEEEEC
Confidence 357999999988777763 23445555432 2344555443
No 435
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=34.63 E-value=55 Score=17.47 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=22.0
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 22 DPELLILDEPTVG-VDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 22 ~p~~lllDEP~~g-lD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
+|+++|+|--..+ .|-. .+.+.+++.. .+..+|++|.
T Consensus 50 ~~dlvi~d~~l~~~~~g~---~~~~~l~~~~--~~~~ii~~s~ 87 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGW---QVARVAREID--PNMPIVYISG 87 (132)
T ss_dssp CCCEEEEESCCSSSSCHH---HHHHHHHHHC--TTCCEEEEES
T ss_pred CCCEEEEeeeCCCCCCHH---HHHHHHHhcC--CCCCEEEEeC
Confidence 7999999987765 6632 3445555432 2344555443
No 436
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=34.63 E-value=61 Score=20.60 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=9.6
Q ss_pred CcEEEEEecCHH
Q psy5634 55 NKTVIITTHYIE 66 (79)
Q Consensus 55 g~tvi~~tH~~~ 66 (79)
+.+|++|||-.-
T Consensus 168 ~~~vliVsHg~~ 179 (265)
T 3f3k_A 168 ASDIMVFAHGHA 179 (265)
T ss_dssp CCEEEEEECHHH
T ss_pred CCcEEEEeChHH
Confidence 578999999653
No 437
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=34.57 E-value=87 Score=20.14 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=27.9
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
+|-||-| -+.|+.....++.+.+.+...+...-+|++|
T Consensus 17 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 56 (258)
T 4fzw_A 17 LLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVIT 56 (258)
T ss_dssp EEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 4567766 4899999999999999988665554444444
No 438
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=34.49 E-value=90 Score=19.89 Aligned_cols=50 Identities=4% Similarity=0.126 Sum_probs=33.4
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634 16 AVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70 (79)
Q Consensus 16 aral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~ 70 (79)
-.++..+.+++++|-. ..++|....++.+.++ +.|..++...|+.+++..
T Consensus 95 ~~~~~~Gad~V~l~~~-~~~~p~~l~~~i~~~~----~~g~~v~~~v~t~eea~~ 144 (232)
T 3igs_A 95 DALAQAGAAIIAVDGT-ARQRPVAVEALLARIH----HHHLLTMADCSSVDDGLA 144 (232)
T ss_dssp HHHHHHTCSEEEEECC-SSCCSSCHHHHHHHHH----HTTCEEEEECCSHHHHHH
T ss_pred HHHHHcCCCEEEECcc-ccCCHHHHHHHHHHHH----HCCCEEEEeCCCHHHHHH
Confidence 3456779999999965 4455644444444333 347888888999988754
No 439
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=34.47 E-value=97 Score=20.27 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=27.4
Q ss_pred EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 25 LLILDEPT-VGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 25 ~lllDEP~-~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
++-|+-|- +.++.....++.+.+.+...+...-+|++|
T Consensus 36 ~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 74 (277)
T 4di1_A 36 TLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLF 74 (277)
T ss_dssp EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 45667664 899999999999999988655444444443
No 440
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=34.44 E-value=62 Score=18.02 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=24.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++|+|--..+.|- ..+.+.+++.. ....||++|.
T Consensus 56 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~ 94 (153)
T 3hv2_A 56 SREVDLVISAAHLPQMDG---PTLLARIHQQY--PSTTRILLTG 94 (153)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHHC--TTSEEEEECC
T ss_pred cCCCCEEEEeCCCCcCcH---HHHHHHHHhHC--CCCeEEEEEC
Confidence 457999999988777763 33444455432 2455555554
No 441
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=34.42 E-value=92 Score=20.01 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=28.2
Q ss_pred EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEec
Q psy5634 25 LLILDEPT-VGVDPLLRQSIWNHLVQITKDGN-KTVIITTH 63 (79)
Q Consensus 25 ~lllDEP~-~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH 63 (79)
++-|+-|- +.+|.....++.+.+.+...+.. +.||+...
T Consensus 18 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 58 (261)
T 3pea_A 18 VATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGE 58 (261)
T ss_dssp EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 45667665 99999999999999998765544 45555443
No 442
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=34.37 E-value=59 Score=17.72 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=17.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQ 49 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~ 49 (79)
..|+++|+|=-..+.|- -++.+.+++
T Consensus 51 ~~~dlvllD~~mp~~~G---~~~~~~lr~ 76 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDG---LLSTKMIRR 76 (133)
T ss_dssp CCCSEEEECSCCSSSCH---HHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCh---HHHHHHHHh
Confidence 57999999977777763 234444544
No 443
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=34.30 E-value=64 Score=18.15 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=29.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 24 ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 24 ~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
.-++||-=.+.|++.....+.++...+....+..|.+..|-
T Consensus 14 ~~v~F~~~s~~l~~~~~~~L~~~a~~l~~~~~~~i~I~Ght 54 (123)
T 3td3_A 14 LRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHT 54 (123)
T ss_dssp EEEECCTTCCCCCGGGHHHHHHHHHHHHHSTTCEEEEEECC
T ss_pred eEEEeCCCChhcCHHHHHHHHHHHHHHHhCCCceEEEEEEe
Confidence 34667777888999888887766655544446678888884
No 444
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=34.30 E-value=82 Score=20.30 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=27.9
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGNK-TVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g~-tvi~~t 62 (79)
++-||-| .+.+++....++.+.+.+...+... .||+..
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 61 (265)
T 3kqf_A 21 KISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTG 61 (265)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 4667777 4899999999999999887654443 444444
No 445
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Probab=34.25 E-value=86 Score=20.36 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=27.8
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| .+.+++....++.+.+.+...+.. +.||+..
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 61 (280)
T 1pjh_A 21 IIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQS 61 (280)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 4557776 599999999999999998765444 4455544
No 446
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=34.15 E-value=86 Score=20.39 Aligned_cols=38 Identities=13% Similarity=0.359 Sum_probs=28.2
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-|- +.+|.....++.+.+.+...+.. +.||+..
T Consensus 22 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 62 (275)
T 4eml_A 22 KIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTG 62 (275)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeC
Confidence 45677774 89999999999999998765544 4555554
No 447
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=34.13 E-value=27 Score=24.10 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=12.5
Q ss_pred CCCEEEEeCCCCCCC
Q psy5634 22 DPELLILDEPTVGVD 36 (79)
Q Consensus 22 ~p~~lllDEP~~glD 36 (79)
..|++++|=|++|..
T Consensus 315 ~fD~Vl~D~Pcsg~g 329 (429)
T 1sqg_A 315 QFDRILLDAPCSATG 329 (429)
T ss_dssp CEEEEEEECCCCCGG
T ss_pred CCCEEEEeCCCCccc
Confidence 358999999999864
No 448
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3
Probab=34.07 E-value=70 Score=20.61 Aligned_cols=38 Identities=8% Similarity=0.145 Sum_probs=27.9
Q ss_pred EEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP-TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP-~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| -+.++.....++.+.+.+..++.. +.||+..
T Consensus 23 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 62 (264)
T 1wz8_A 23 EITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRG 62 (264)
T ss_dssp EEEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEE
T ss_pred EEEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEC
Confidence 3557877 699999999999999988754434 4555554
No 449
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=34.05 E-value=44 Score=24.26 Aligned_cols=46 Identities=11% Similarity=0.227 Sum_probs=30.9
Q ss_pred hcCCCEEEEeCC-------------CCCCCH------HHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 20 MHDPELLILDEP-------------TVGVDP------LLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 20 ~~~p~~lllDEP-------------~~glD~------~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+.+|+++++|-| .+..+. ..++.+...+.++.+ .|..+|++.-+.+
T Consensus 231 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~-~g~~lvi~~~~I~ 295 (545)
T 1a6d_A 231 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKK-SGANVVLCQKGID 295 (545)
T ss_dssp EEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHH-TTCCEEEESSCBC
T ss_pred ecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHH-hCCCEEEECCCcc
Confidence 578999999988 333433 233445677777654 4778888877654
No 450
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=34.05 E-value=51 Score=21.00 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHH-h--cCCcEEEEEecCHH
Q psy5634 40 RQSIWNHLVQIT-K--DGNKTVIITTHYIE 66 (79)
Q Consensus 40 ~~~i~~~l~~~~-~--~~g~tvi~~tH~~~ 66 (79)
..++...+.++. . ..+.+|++|||..-
T Consensus 160 ~~Rv~~~l~~li~~~~~~~~~vlvVsHg~~ 189 (262)
T 1yfk_A 160 IARALPFWNEEIVPQIKEGKRVLIAAHGNS 189 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEEcChHH
Confidence 344555555532 1 24678999999753
No 451
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=33.93 E-value=65 Score=19.76 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=21.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 24 ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 24 ~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..+|+|= |..+.....+.+.+++.... ....|++||.
T Consensus 41 ~~iLiD~---G~~~~~~~~l~~~l~~~~~~-~~~~vi~TH~ 77 (246)
T 2fhx_A 41 TVVIVSS---PFENLGTQTLMDWVAKTMKP-KKVVAINTHF 77 (246)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHHCC-SEEEEECCSS
T ss_pred eEEEEeC---CCCHHHHHHHHHHHHHhcCC-CcEEEEeCCC
Confidence 4788883 44555566676767664222 2234678884
No 452
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=33.61 E-value=91 Score=19.97 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=28.7
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEec
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITTH 63 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH 63 (79)
++-|+-| .+.++.....++.+.+.+...+.. +.||+...
T Consensus 24 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~ 65 (258)
T 3lao_A 24 LIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAH 65 (258)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 4667777 489999999999999988765544 45555543
No 453
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=33.17 E-value=55 Score=17.05 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=23.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-.+|+++++|-...+.|- ..+.+.+++.. .+..+|++|.
T Consensus 43 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~ 81 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISG---LEVAGEIRKKK--KDAKIILLTA 81 (116)
T ss_dssp HSCCSEEEECSCCSSSCH---HHHHHHHHHHC--TTCCEEEEES
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHHccC--CCCeEEEEEC
Confidence 357999999987777663 23445555432 2344555544
No 454
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=33.08 E-value=1e+02 Score=20.23 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=28.2
Q ss_pred EEEEe---CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 25 LLILD---EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 25 ~lllD---EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
++-|+ ++.+.|++....++.+.+.+...+..+.||++.
T Consensus 35 ~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~r~vVltg 75 (291)
T 2fbm_A 35 QIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSA 75 (291)
T ss_dssp EEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSCSEEEEEE
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 45566 457999999999999999887554445666655
No 455
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=32.98 E-value=1.3e+02 Score=23.71 Aligned_cols=50 Identities=10% Similarity=0.228 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEe
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITT 62 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-~g~tvi~~t 62 (79)
.+++..+|+..|+++++=|-...++. ..+.+.+.+++.... .+.+||+++
T Consensus 381 ~LAl~agLA~GAd~IlIPE~p~~~~~-~~~~v~~~i~~~~~~gk~~~IVVVA 431 (941)
T 3opy_B 381 WLGLLAGLATSADYILIPEKPASSRE-WQDQMCDIVGKHRARGKRKTIVIVA 431 (941)
T ss_dssp HHHHHHHHHTTCSEEECTTSCCCSSC-HHHHHHHHHHHHHHHTCCCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEECCCCCChHH-HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 47888999999999999876555542 235566666654322 345777775
No 456
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A
Probab=32.87 E-value=92 Score=20.48 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=27.9
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCCc-EEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGNK-TVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g~-tvi~~t 62 (79)
++-|+-|- +.++.....++.+.+.+...+... .||+..
T Consensus 40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 80 (289)
T 3t89_A 40 KITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTG 80 (289)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEc
Confidence 45677774 899999999999999887655443 444444
No 457
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=32.80 E-value=81 Score=18.85 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=18.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQI 50 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~ 50 (79)
-.+|+++|+|--..+.|- .++.+.+++.
T Consensus 23 ~~~~dlvl~D~~~p~~~g---~~~~~~l~~~ 50 (237)
T 3cwo_X 23 ELKPDIVTMDITMPEMNG---IDAIKEIMKI 50 (237)
T ss_dssp HHCCSCEEEECCSTTSSH---HHHHHHHHHH
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 357999999977767663 3445555554
No 458
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=32.48 E-value=94 Score=23.89 Aligned_cols=49 Identities=4% Similarity=0.007 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEe
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLR-QSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~-~~i~~~l~~~~~~~g~tvi~~t 62 (79)
.+++..+|+..|+++++=|- ..|.... +.+..+.++..+..+.++|+++
T Consensus 579 ~lAl~aglA~gad~ilIPE~--~~~l~~~~~~i~~~~~r~~~~~~~~iVvva 628 (762)
T 3o8l_A 579 YLATMAGLAAGADAAYIFEE--PFTIRDLQANVEHLVQKMKTTVKRGLVLRN 628 (762)
T ss_dssp HHHHHHHHHTTCSEEECSSS--CCCHHHHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred HHHHHHHHhhCCCEEEECCC--CCCHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 47888999999999998765 3444433 3344444444322245677765
No 459
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=32.48 E-value=62 Score=20.98 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=27.7
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| .+.++.....++.+.+.+..++.. +.||+..
T Consensus 24 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 64 (272)
T 1hzd_A 24 VLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRS 64 (272)
T ss_dssp EEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 3557766 699999999999999988765444 4555554
No 460
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=32.39 E-value=82 Score=18.78 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=26.5
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 27 ILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 27 llDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
+.|+ ..-|++..+.++-+.+.++.++.|.-|+++|
T Consensus 17 V~D~-A~vLs~~~~~~L~~~l~~l~~~tg~qi~Vvt 51 (148)
T 2kpt_A 17 VTDY-TGQISSSDITNIQAAIDDVKASEQKVIFVVF 51 (148)
T ss_dssp EEES-SSCSCHHHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred eeeC-CCCCCHHHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 4454 5779999999999999998766666565554
No 461
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}
Probab=32.20 E-value=63 Score=21.24 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=27.3
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-||-| .+.++.....++.+.+.+...+.. +.||+..
T Consensus 45 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 85 (287)
T 2vx2_A 45 NIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISA 85 (287)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEEC
Confidence 3556777 499999999999999988754434 4555554
No 462
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=32.17 E-value=69 Score=20.54 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=27.9
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-|- +.+|.....++.+.+.+...+.. +.||+..
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 58 (255)
T 3p5m_A 18 RIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTG 58 (255)
T ss_dssp EEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEEC
Confidence 46677774 89999999999999998765544 4455444
No 463
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=32.08 E-value=66 Score=17.63 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=22.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
..|+++|+|--..+.| ...+.+.+++.. ....||++|-
T Consensus 66 ~~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~~~~ii~lt~ 103 (146)
T 4dad_A 66 DAFDILMIDGAALDTA---ELAAIEKLSRLH--PGLTCLLVTT 103 (146)
T ss_dssp TTCSEEEEECTTCCHH---HHHHHHHHHHHC--TTCEEEEEES
T ss_pred CCCCEEEEeCCCCCcc---HHHHHHHHHHhC--CCCcEEEEeC
Confidence 6899999997766533 334455555532 2445555554
No 464
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=31.83 E-value=50 Score=18.82 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 41 QSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 41 ~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
+++.+.++++.++.+..||++|-+.
T Consensus 32 ee~~~~~~~l~~~~digIIlIte~~ 56 (109)
T 2d00_A 32 EEAQSLLETLVERGGYALVAVDEAL 56 (109)
T ss_dssp HHHHHHHHHHHHHCCCSEEEEETTT
T ss_pred HHHHHHHHHHhhCCCeEEEEEeHHH
Confidence 4555666666655567788888654
No 465
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=31.79 E-value=78 Score=19.35 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=22.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 24 ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 24 ~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..+|+|=. ........+.+.+.+.. ......|++||.
T Consensus 47 ~~iLiD~G---~~~~~~~~~~~~l~~~~-~~~i~~ii~TH~ 83 (232)
T 1a7t_A 47 QAALLDTP---INDAQTEMLVNWVTDSL-HAKVTTFIPNHW 83 (232)
T ss_dssp EEEEESCC---SSHHHHHHHHHHHHHHH-CCEEEEEECSSS
T ss_pred EEEEEeCC---CCHHHHHHHHHHHHHhc-CCCeEEEEeCCC
Confidence 46777744 34445556666666542 224678888884
No 466
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=31.77 E-value=91 Score=19.14 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=23.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 24 ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 24 ~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..+|+|= |..+.....+.+.+.+.. ......|++||.
T Consensus 58 ~~iLID~---G~~~~~~~~l~~~l~~~~-~~~i~~vi~TH~ 94 (243)
T 4hl2_A 58 RVLVVDT---AWTDDQTAQILNWIKQEI-NLPVALAVVTHA 94 (243)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHT-CCCEEEEEECSS
T ss_pred cEEEEEC---CCCCccHHHHHHHHHHhh-CCCeeEEEECCC
Confidence 4677773 455666677777776541 224677888884
No 467
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=31.71 E-value=66 Score=17.50 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=22.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..|+++|+|--..+.|- ..+.+.+++. .....||++|..
T Consensus 54 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~--~~~~~ii~~s~~ 92 (143)
T 2qv0_A 54 NKVDAIFLDINIPSLDG---VLLAQNISQF--AHKPFIVFITAW 92 (143)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHTTS--TTCCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHcc--CCCceEEEEeCC
Confidence 57999999977766653 2333444432 123335555543
No 468
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=31.68 E-value=1.1e+02 Score=20.09 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=14.0
Q ss_pred HHHHHHhcCCCEEEEeCCC
Q psy5634 14 SFAVALMHDPELLILDEPT 32 (79)
Q Consensus 14 ~laral~~~p~~lllDEP~ 32 (79)
.+..+-..+|.++++||.-
T Consensus 97 lf~~a~~~~~~vl~iDEid 115 (322)
T 1xwi_A 97 LFQLARENKPSIIFIDEID 115 (322)
T ss_dssp HHHHHHHTSSEEEEEETTT
T ss_pred HHHHHHhcCCcEEEeecHH
Confidence 3444556789999999974
No 469
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=31.64 E-value=1e+02 Score=19.71 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 4 SSRGGQQRRVSFAVALMH--DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 4 ~lS~G~kqrv~laral~~--~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
.+++.+..++.+.+..+. .|+++=+ |-+...+......+. +.+++.|..||++.||.
T Consensus 77 ~~~~~~~~~~~ll~~~~~~~~~d~iDv-El~~~~~~~~~~~l~----~~~~~~~~kvI~S~Hdf 135 (238)
T 1sfl_A 77 YGQFTNDSYLNLISDLANINGIDMIDI-EWQADIDIEKHQRII----THLQQYNKEVIISHHNF 135 (238)
T ss_dssp CBCCCHHHHHHHHHHGGGCTTCCEEEE-ECCTTSCHHHHHHHH----HHHHHTTCEEEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEE-EccCCCChHHHHHHH----HHHHhcCCEEEEEecCC
Confidence 445567788888877774 4776644 444322443333332 23334577899999973
No 470
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=31.48 E-value=62 Score=17.12 Aligned_cols=39 Identities=36% Similarity=0.489 Sum_probs=23.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++++|--..+.|- ..+.+.+++. ..+..+|++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~--~~~~~ii~~s~ 83 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDG---IEILKRMKVI--DENIRVIIMTA 83 (124)
T ss_dssp HHCCSEEEEESCCTTCCH---HHHHHHHHHH--CTTCEEEEEES
T ss_pred ccCCCEEEEecCCCCCCH---HHHHHHHHHh--CCCCCEEEEEc
Confidence 357999999987777663 2344445543 22445555544
No 471
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=31.33 E-value=71 Score=20.50 Aligned_cols=38 Identities=5% Similarity=0.204 Sum_probs=26.9
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
++-||-| .+.+++....++.+.+.+..++.-+.||+..
T Consensus 16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~vr~vVltg 55 (261)
T 1ef8_A 16 VIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRA 55 (261)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHTCSTTCCEEEEEC
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCceEEEEEC
Confidence 4567877 4999999999999999887544323444443
No 472
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=31.31 E-value=56 Score=22.60 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=28.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634 24 ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67 (79)
Q Consensus 24 ~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~ 67 (79)
.+++.|+-+..-|+ .+..+ ..|.+.+++.|..|.++|.+-+.
T Consensus 304 tLLV~d~l~r~~d~-~r~~~-~~l~e~v~~~Gg~V~ivs~~~e~ 345 (364)
T 3obw_A 304 TVLVIEDLLSSDEQ-ERLTI-ERMLEDIENKRGEVILVPKESPI 345 (364)
T ss_dssp EEEEEGGGGSSCHH-HHHHH-HHHHHHHHTTTCEEEEECTTSTT
T ss_pred EEEEeccCcccccc-hHHHH-HHHHHHHHhcCCEEEEECCCCCC
Confidence 57888887777676 44444 44555556678888888876543
No 473
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=31.31 E-value=1.3e+02 Score=23.23 Aligned_cols=50 Identities=8% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEe
Q psy5634 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITT 62 (79)
Q Consensus 12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-~g~tvi~~t 62 (79)
.+++..+|+..|+++++=|-.-.++.. .+.+.+.+++.... .+.+||+++
T Consensus 204 ~LAl~agLA~gAd~ilIPE~p~~~~~~-~~~v~~~i~~~~~~gk~~~IVvVa 254 (787)
T 3o8o_A 204 WLALMAGIATGADYIFIPERAVPHGKW-QDELKEVCQRHRSKGRRNNTIIVA 254 (787)
T ss_dssp HHHHHHHHHTTCSEEECGGGCBCTTTH-HHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHHhhCCCEEEeCCCCCChHHH-HHHHHHHHHHHHhcCCCceEEEEe
Confidence 478889999999999998765555532 35566666654322 245677765
No 474
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=31.15 E-value=27 Score=25.47 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=29.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+.+|+++++|-+.+. .+++...+.++.+ .|..++++..+.+
T Consensus 213 ~en~~Ill~d~~Is~-----~~~l~~~le~i~~-~g~~lvii~~~I~ 253 (543)
T 1we3_A 213 LEDAFILIVEKKVSN-----VRELLPILEQVAQ-TGKPLLIIAEDVE 253 (543)
T ss_dssp EEEEEEEEESSCBCC-----HHHHHHHHHHHHT-TTCCEEEEESCBC
T ss_pred ecCceEEEECCCcCC-----HHHHHHHHHHHHh-cCCCEEEEcCCcc
Confidence 468999999998764 3446677777654 4788888887654
No 475
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=31.08 E-value=91 Score=18.94 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=13.7
Q ss_pred cCCCEEEEeCCCCCCCH
Q psy5634 21 HDPELLILDEPTVGVDP 37 (79)
Q Consensus 21 ~~p~~lllDEP~~glD~ 37 (79)
..|+++|+|--..+.|-
T Consensus 48 ~~~dlvilD~~l~~~~g 64 (238)
T 2gwr_A 48 LRPDLVLLDLMLPGMNG 64 (238)
T ss_dssp HCCSEEEEESSCSSSCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 57999999987777663
No 476
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=31.08 E-value=87 Score=18.73 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=24.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~ 65 (79)
-..|+++++|--..+.|-. .+.+.+++. .+..+|++|...
T Consensus 46 ~~~~dlvllD~~l~~~~g~---~~~~~l~~~---~~~~ii~lt~~~ 85 (230)
T 2oqr_A 46 RAGADIVLLDLMLPGMSGT---DVCKQLRAR---SSVPVIMVTARD 85 (230)
T ss_dssp HHCCSEEEEESSCSSSCHH---HHHHHHHHH---CSCSEEEEECCH
T ss_pred ccCCCEEEEECCCCCCCHH---HHHHHHHcC---CCCCEEEEeCCC
Confidence 3579999999877776632 344545542 244555555443
No 477
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}
Probab=31.06 E-value=1.1e+02 Score=21.27 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=28.3
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 25 LLILDEPT--VGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 25 ~lllDEP~--~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
++-|+-|- +.|+.....++.+.+.++..+...-+|++|
T Consensus 54 ~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVlt 93 (407)
T 3ju1_A 54 VVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLD 93 (407)
T ss_dssp EEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 46678774 899999999999999988655554444443
No 478
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=31.03 E-value=79 Score=21.24 Aligned_cols=38 Identities=5% Similarity=0.120 Sum_probs=28.0
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
.|-|+-| .+.++.....++.+.+.+...+.. +.||+..
T Consensus 47 ~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG 87 (333)
T 3njd_A 47 RITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSG 87 (333)
T ss_dssp EEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 4667877 499999999999999998765544 3444443
No 479
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=30.83 E-value=70 Score=21.37 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=23.4
Q ss_pred CCCEEEEeCCCCCCCH--------HHHHHHHHHHHHHHhcCCcEEEEE
Q psy5634 22 DPELLILDEPTVGVDP--------LLRQSIWNHLVQITKDGNKTVIIT 61 (79)
Q Consensus 22 ~p~~lllDEP~~glD~--------~~~~~i~~~l~~~~~~~g~tvi~~ 61 (79)
..|++++|-|..+..+ .....+++.+.+..+.+|.-++..
T Consensus 225 ~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~ 272 (332)
T 2igt_A 225 TYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 272 (332)
T ss_dssp CBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred CceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 5699999999766542 223344555555555556534433
No 480
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=30.78 E-value=70 Score=17.49 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=23.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
-..|+++|+|--..+.|- ..+.+.+++. .....+|++|.
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~l~~~l~~~--~~~~~ii~ls~ 84 (137)
T 3cfy_A 46 RSKPQLIILDLKLPDMSG---EDVLDWINQN--DIPTSVIIATA 84 (137)
T ss_dssp HHCCSEEEECSBCSSSBH---HHHHHHHHHT--TCCCEEEEEES
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHhc--CCCCCEEEEEe
Confidence 358999999987777663 2344445543 22445555554
No 481
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=30.78 E-value=59 Score=19.56 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 23 PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 23 p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
-..+|+|=. .+......+.+.+.+.. ......|++||.
T Consensus 40 ~~~iLiD~G---~~~~~~~~~~~~l~~~~-~~~i~~ii~TH~ 77 (219)
T 3l6n_A 40 KGVVLFDVP---WEKVQYQSLMDTIKKRH-NLPVVAVFATHS 77 (219)
T ss_dssp TEEEEESCC---SSGGGHHHHHHHHHHHH-SCCEEEEECSSS
T ss_pred CEEEEEeCC---CChHHHHHHHHHHHHhc-CCceeEEEecCC
Confidence 456777744 34434455666666532 235788999994
No 482
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=30.71 E-value=59 Score=22.24 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=27.2
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCc
Q psy5634 21 HDPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNK 56 (79)
Q Consensus 21 ~~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~ 56 (79)
..|+-+++| .|-.|.+.....+....+++...+.|.
T Consensus 130 ~~PD~lvfDLDP~~~~~f~~v~~aA~~~r~~L~~lGL 166 (309)
T 2fao_A 130 ERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGL 166 (309)
T ss_dssp TSCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 359999999 888899988877777767766555443
No 483
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=30.68 E-value=62 Score=18.88 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=22.5
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63 (79)
Q Consensus 19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH 63 (79)
--..|+++|+|=-..+.|- -.+.+.+++.. .+..||++|-
T Consensus 48 ~~~~~dlvl~D~~lp~~~g---~~~~~~l~~~~--~~~~ii~lt~ 87 (184)
T 3rqi_A 48 GAEKFEFITVXLHLGNDSG---LSLIAPLCDLQ--PDARILVLTG 87 (184)
T ss_dssp TTSCCSEEEECSEETTEES---HHHHHHHHHHC--TTCEEEEEES
T ss_pred hhCCCCEEEEeccCCCccH---HHHHHHHHhcC--CCCCEEEEeC
Confidence 3467999999966555542 23444455432 2344555444
No 484
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=30.66 E-value=6.8 Score=25.67 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEeCCCC
Q psy5634 5 SRGGQQRRVSFAVALMHD-PELLILDEPTV 33 (79)
Q Consensus 5 lS~G~kqrv~laral~~~-p~~lllDEP~~ 33 (79)
+.+|..|--+|..+|-.+ ...|+.||.++
T Consensus 230 vA~G~~Ka~AI~aal~g~~~~~LItDe~aA 259 (264)
T 2r5f_A 230 LAGGVRKVQAIKGALLGGYLDVLITDVGTA 259 (264)
T ss_dssp ECCCGGGHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred EEcCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 356766666776666555 48899998764
No 485
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=30.57 E-value=1.1e+02 Score=19.72 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=27.6
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
++-|+-| .+.|++....++.+.+.+...+...-+|++|
T Consensus 22 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVlt 61 (263)
T 3moy_A 22 LIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVT 61 (263)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 4667777 4899999999999999887655444344443
No 486
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=30.49 E-value=67 Score=23.25 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=31.1
Q ss_pred hcCCCEEEEeCC-------------CCCCCHH------HHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634 20 MHDPELLILDEP-------------TVGVDPL------LRQSIWNHLVQITKDGNKTVIITTHYIE 66 (79)
Q Consensus 20 ~~~p~~lllDEP-------------~~glD~~------~~~~i~~~l~~~~~~~g~tvi~~tH~~~ 66 (79)
+.+|+++++|-| .+..... .++.+...+.++.+ .|..+|++.-+.+
T Consensus 232 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~-~g~~lvi~~~~I~ 296 (543)
T 1a6d_B 232 VKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKS-VGANVVITQKGID 296 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHH-TTCCEEEESSCBC
T ss_pred ecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHH-cCCCEEEECCCcC
Confidence 578999999998 4444432 23345666766654 4778888877654
No 487
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=30.17 E-value=1.3e+02 Score=20.44 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
.+.+.|.++-+.--..=--.|..++|.-|... .....+.+.+....+.+...+|+..|.
T Consensus 90 ~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~---e~~~~y~~~i~~~~~~~~nVlil~~~~ 148 (294)
T 3g40_A 90 AEFEENLVVGMEALTGSFFRPSILFLRLPENR---DRDEEIREIIRKASMYRMGVLLFSKHP 148 (294)
T ss_dssp ---CHHHHHHHHHHTTCSSCSCEEEEECCSSG---GGHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CChhHHHHHHHHHcCCCCCCCCEEEeCCCCCh---hhhHHHHHHHHHHHHhCceEEEEecCC
Confidence 35788988888777777779999999988554 445566676766544433345554453
No 488
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Probab=30.11 E-value=93 Score=20.01 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=26.4
Q ss_pred EEEeC--CCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 26 LILDE--PTVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 26 lllDE--P~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
+-|+- +-+.+++....++.+.+.+..++.. +.||+..
T Consensus 29 itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 68 (257)
T 1szo_A 29 VTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTG 68 (257)
T ss_dssp EEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEc
Confidence 45664 4689999999999999988765444 4454444
No 489
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=30.09 E-value=94 Score=20.61 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 33 VGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 33 ~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
.++|+.....+.+.+.++.++ |.-|++|+
T Consensus 67 ~~ld~~~i~~la~~I~~l~~~-G~~vviV~ 95 (281)
T 3nwy_A 67 VGLDPDVVAQVARQIADVVRG-GVQIAVVI 95 (281)
T ss_dssp SSCCHHHHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 689999999999999988654 65565555
No 490
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=30.00 E-value=46 Score=22.57 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=24.2
Q ss_pred CCCEEEEeCCCCCCCHHH-------HHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634 22 DPELLILDEPTVGVDPLL-------RQSIWNHLVQITKDGNKTVIITTHY 64 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~-------~~~i~~~l~~~~~~~g~tvi~~tH~ 64 (79)
..|++++|-|..+..... ...++....+..+. |..++++|..
T Consensus 289 ~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~~~~ 337 (396)
T 2as0_A 289 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD-GGILVTCSCS 337 (396)
T ss_dssp CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE-EEEEEEEECC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEECC
Confidence 579999999987765422 22233333333343 4456676654
No 491
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=29.87 E-value=7.4 Score=25.53 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEeCCCC
Q psy5634 5 SRGGQQRRVSFAVALMHD-PELLILDEPTV 33 (79)
Q Consensus 5 lS~G~kqrv~laral~~~-p~~lllDEP~~ 33 (79)
+.+|..|--+|..+|-.+ ...|+.||.++
T Consensus 227 vA~G~~Ka~AI~aal~g~~~~~LItDe~aA 256 (266)
T 2gnp_A 227 VAYGDTKVSSILSVLRANLVNHLITDKNTI 256 (266)
T ss_dssp ECCSGGGHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred EecChhhHHHHHHHHhcCCCCEEEECHHHH
Confidence 356777777777676655 48999998764
No 492
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=29.86 E-value=64 Score=21.89 Aligned_cols=40 Identities=5% Similarity=0.047 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634 30 EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69 (79)
Q Consensus 30 EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~ 69 (79)
-|.+.+++..+.++.+.+.+..++.+.-=|+|||=-+..+
T Consensus 60 idS~~mt~~~w~~la~~I~~~~~~~~~dG~VItHGTDTme 99 (327)
T 1o7j_A 60 MASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVE 99 (327)
T ss_dssp ECGGGCCHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHH
T ss_pred CCcccCCHHHHHHHHHHHHHHhccCCCCEEEEecCchhHH
Confidence 4788999999999999998876543466788899655443
No 493
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=29.82 E-value=90 Score=18.48 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=22.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634 20 MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62 (79)
Q Consensus 20 ~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t 62 (79)
-.+|+++++|--..+.|- -.+.+.+++. .....||++|
T Consensus 49 ~~~~dlvllD~~lp~~~g---~~~~~~lr~~--~~~~~ii~ls 86 (215)
T 1a04_A 49 SLDPDLILLDLNMPGMNG---LETLDKLREK--SLSGRIVVFS 86 (215)
T ss_dssp HHCCSEEEEETTSTTSCH---HHHHHHHHHS--CCCSEEEEEE
T ss_pred hcCCCEEEEeCCCCCCcH---HHHHHHHHHh--CCCCcEEEEE
Confidence 357999999987777763 2344445443 1234445444
No 494
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}
Probab=29.79 E-value=1.1e+02 Score=19.69 Aligned_cols=38 Identities=13% Similarity=0.305 Sum_probs=27.6
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEe
Q psy5634 25 LLILDEP--TVGVDPLLRQSIWNHLVQITKDGN-KTVIITT 62 (79)
Q Consensus 25 ~lllDEP--~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~t 62 (79)
++-|+-| .+.|+.....++.+.+.+...+.. +.||+..
T Consensus 25 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 65 (273)
T 2uzf_A 25 KVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTG 65 (273)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3556765 699999999999999998765544 4555544
No 495
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=29.68 E-value=2.7 Score=27.00 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCE
Q psy5634 2 EISSRGGQQRRVSFAVALMHDPEL 25 (79)
Q Consensus 2 ~~~lS~G~kqrv~laral~~~p~~ 25 (79)
++.||||..++...+++|+..|+-
T Consensus 71 ~~~lsg~~~~lt~~g~~l~~~~~~ 94 (265)
T 1b9m_A 71 TGGKGGGGAVLTRYGQRLIQLYDL 94 (265)
T ss_dssp CCC-----EEECHHHHHHHHHHHH
T ss_pred CCCCCCCceEECHHHHHHHHHHHH
Confidence 357999999999999999988873
No 496
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=29.48 E-value=29 Score=23.39 Aligned_cols=38 Identities=5% Similarity=0.201 Sum_probs=27.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
+|+++. +|+++......+++.+.+.... ++.+|.+...
T Consensus 252 ~~~vi~----iSA~~g~Gi~~L~~~I~~~~~~-----~~~~~~~~~~ 289 (349)
T 2www_A 252 KPKVIR----ISARSGEGISEMWDKMKDFQDL-----MLASGELTAK 289 (349)
T ss_dssp CCEEEE----CCTTTCTTHHHHHHHHHHHHHH-----HHHHSHHHHH
T ss_pred CceEEE----EecCCCCCHHHHHHHHHHHHHH-----HhhCchHHHH
Confidence 456554 9999999999999999887542 3456766554
No 497
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Probab=29.45 E-value=87 Score=20.32 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCEEEEe---CCCCCCCHHHHHHHHHHH
Q psy5634 14 SFAVALMHDPELLILD---EPTVGVDPLLRQSIWNHL 47 (79)
Q Consensus 14 ~laral~~~p~~lllD---EP~~glD~~~~~~i~~~l 47 (79)
.+|..+...|.++.++ ||..+.+......+.+.+
T Consensus 125 ~ia~~~~~~~~vv~~~l~NEP~~~~~~~~~~~~~~~~ 161 (320)
T 3nco_A 125 QVAQAFKDYPDKLFFEIFNEPAQNLTPTKWNELYPKV 161 (320)
T ss_dssp HHHHHHTTSCTTEEEECCSCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCceEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 4667777789877766 999888766554443333
No 498
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Probab=29.40 E-value=1.1e+02 Score=19.59 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=27.9
Q ss_pred EEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEec
Q psy5634 25 LLILDEP-TVGVDPLLRQSIWNHLVQITKDGN-KTVIITTH 63 (79)
Q Consensus 25 ~lllDEP-~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH 63 (79)
++-||-| .+.+++....++.+.+.+...+.. +.||+...
T Consensus 17 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~ 57 (260)
T 1sg4_A 17 VMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSD 57 (260)
T ss_dssp EEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcC
Confidence 4556766 588999999999999988765544 45555543
No 499
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=29.40 E-value=65 Score=21.88 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=30.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634 30 EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68 (79)
Q Consensus 30 EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~ 68 (79)
-|.+.+++..+.++.+.+.+..++.+.-=|+|||=-+..
T Consensus 60 idS~~mt~~~w~~la~~I~~~~~~~~~dG~VItHGTDTm 98 (332)
T 2wlt_A 60 IGSQDMNEEIWFKLAQRAQELLDDSRIQGVVITHGTDTL 98 (332)
T ss_dssp ECGGGCCHHHHHHHHHHHHHHHTSTTCCEEEEECCSSSH
T ss_pred CCcccCCHHHHHHHHHHHHHHhccCCCCEEEEecCchhH
Confidence 478899999999999999887654346678889965443
No 500
>1tlj_A Hypothetical UPF0130 protein SSO0622; midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.80A {Sulfolobus solfataricus} SCOP: d.282.1.1
Probab=29.38 E-value=34 Score=22.10 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=9.2
Q ss_pred CcEEEEEecCH
Q psy5634 55 NKTVIITTHYI 65 (79)
Q Consensus 55 g~tvi~~tH~~ 65 (79)
+...++++|++
T Consensus 67 ~g~wl~~sH~p 77 (213)
T 1tlj_A 67 NSTIIFKNHLR 77 (213)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEECCC
Confidence 55899999986
Done!