RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5634
(79 letters)
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 103 bits (260), Expect = 6e-29
Identities = 34/62 (54%), Positives = 49/62 (79%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG ++R+S A+AL+HDPELLILDEPT G+DP R+ IW L ++ K+G T++++TH +E
Sbjct: 139 GGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198
Query: 67 EA 68
EA
Sbjct: 199 EA 200
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 100 bits (252), Expect = 8e-29
Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG ++R++ A AL+HDPELLILDEPT G+DP R+ W L ++ K+G KT+++++H +E
Sbjct: 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG-KTILLSSHILE 156
Query: 67 EARQ 70
EA +
Sbjct: 157 EAER 160
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 83.2 bits (206), Expect = 1e-21
Identities = 29/64 (45%), Positives = 47/64 (73%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +RR+ A +L+H PE+L LDEPT+G+DP R +W ++ ++ ++ T+++TTHY+E
Sbjct: 134 GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193
Query: 67 EARQ 70
EA Q
Sbjct: 194 EAEQ 197
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 81.1 bits (201), Expect = 2e-21
Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL+ +P+LL+LDEPT G+DP R+ + L ++ ++G +TVII TH E
Sbjct: 83 GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEG-RTVIIVTHDPE 141
Query: 67 EARQA 71
A A
Sbjct: 142 LAELA 146
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 79.1 bits (196), Expect = 5e-20
Identities = 27/62 (43%), Positives = 48/62 (77%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +R++S A+AL+ P +L+LDEPT G+DP R++IW+ ++++ K +++I+TTH ++
Sbjct: 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD 193
Query: 67 EA 68
EA
Sbjct: 194 EA 195
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 79.4 bits (196), Expect = 1e-19
Identities = 29/64 (45%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +RR+ A +L+H P++L LDEPT G+DP R++IW+++ + ++G T+++TTHY+E
Sbjct: 127 GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEG-VTILLTTHYME 185
Query: 67 EARQ 70
EA +
Sbjct: 186 EADK 189
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 76.0 bits (188), Expect = 7e-19
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A L DP++L+LDEPT G+DP R+ + L ++ +G KT+II TH ++
Sbjct: 137 GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG-KTIIIVTHDLD 195
Query: 67 EARQ 70
+
Sbjct: 196 LLLE 199
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 76.4 bits (188), Expect = 2e-18
Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +RR++ A AL++DP+LLILDEPT G+DP R IW L + G KT+++TTH++E
Sbjct: 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG-KTILLTTHFME 233
Query: 67 EA 68
EA
Sbjct: 234 EA 235
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 74.6 bits (184), Expect = 4e-18
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A L PE+L+LDEPT G+DP R+ + L ++ ++G KT+II TH +E
Sbjct: 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE 200
Query: 67 EA 68
Sbjct: 201 LV 202
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 73.0 bits (180), Expect = 5e-18
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL DP++L+LDEPT +DP+ R+ + L + TV++ TH ++
Sbjct: 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162
Query: 67 EAR 69
EA
Sbjct: 163 EAA 165
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 74.5 bits (183), Expect = 9e-18
Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +RR++ A AL++DP++L+LDEPT G+DP R +W L + G KT+++TTH++E
Sbjct: 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARG-KTILLTTHFME 199
Query: 67 EA-RQAH--TVIDN 77
EA R VI+
Sbjct: 200 EAERLCDRLCVIEE 213
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 74.6 bits (183), Expect = 9e-18
Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +RR++ A AL++DP+LLILDEPT G+DP R IW L + G KT+++TTH++E
Sbjct: 138 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG-KTILLTTHFME 196
Query: 67 EA 68
EA
Sbjct: 197 EA 198
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 72.5 bits (179), Expect = 1e-17
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL +DP++++ DEPT +D + + L ++ K+ T+++ TH E
Sbjct: 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202
Query: 67 EARQAHTVI 75
A A +I
Sbjct: 203 LAEYADRII 211
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 72.6 bits (179), Expect = 1e-17
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +RRV A AL+ DP +LI+DEPT G+DP R N L ++ +D + VI++TH +E
Sbjct: 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED--RIVILSTHIVE 190
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 71.2 bits (175), Expect = 6e-17
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +RRV A AL+H P LL+LDEPTVG+DP R +I H+ + +D +V+ TH ++
Sbjct: 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVD 194
Query: 67 EARQAHTVI 75
E ++
Sbjct: 195 EIEADDRLV 203
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 71.0 bits (175), Expect = 8e-17
Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
++S GG ++RV+ A AL P+LL+LDEP +D L R+ + + L+++ ++ KTV++
Sbjct: 130 QLS--GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLV 187
Query: 62 THYIEEA 68
TH ++EA
Sbjct: 188 THDVDEA 194
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 70.6 bits (174), Expect = 9e-17
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL+++P++++ DEPT +D + + L ++ K+ KT+I+ TH E
Sbjct: 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204
Query: 67 EARQAHTVI 75
A+ A VI
Sbjct: 205 LAKYADRVI 213
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 69.8 bits (172), Expect = 2e-16
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG ++RV+ A AL DP++L+LDEP +D L R+ + L+ I ++ KTV++ TH I+
Sbjct: 134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193
Query: 67 EA 68
EA
Sbjct: 194 EA 195
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 68.5 bits (168), Expect = 8e-16
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQI-TKDGNKTVIITTHYIE 66
G+QRRV A AL+ DPELLILDEP G+D + R+ + N L ++ G ++ TH+ E
Sbjct: 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234
Query: 67 EA 68
E
Sbjct: 235 EI 236
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 67.9 bits (167), Expect = 9e-16
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV A AL+ DP+LL+LDEP GVDP ++ I+ L ++ ++G T+++ TH +
Sbjct: 135 GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG-MTILVVTHDL- 192
Query: 67 EARQAHTVIDNYD 79
V++ +D
Sbjct: 193 -----GLVLEYFD 200
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 68.0 bits (167), Expect = 1e-15
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV A AL +P+LL+LDEP GVD ++ I++ L ++ + KTV++ TH +
Sbjct: 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL-RQEGKTVLMVTHDLG 200
Query: 67 EARQ 70
Sbjct: 201 LVMA 204
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 67.2 bits (165), Expect = 2e-15
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL +P LL+LDEP +D LR+ + L ++ ++ T I TH E
Sbjct: 133 GGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
Query: 67 EA-RQAHTVI 75
EA A +
Sbjct: 193 EALALADRIA 202
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 65.5 bits (161), Expect = 3e-15
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ DP +LILDE T +DP I L + K KTVI+ H +
Sbjct: 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKG--KTVIVIAHRLS 156
Query: 67 EARQAHTVI 75
R A +I
Sbjct: 157 TIRDADRII 165
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 65.0 bits (159), Expect = 5e-15
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY-- 64
GG+++R++ A L+ D +++LDEPTVG+DP+ + + + + ++ KD KT+I TH+
Sbjct: 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD--KTLIWITHHLT 158
Query: 65 -IEEARQAHTVIDN 77
IE + ++N
Sbjct: 159 GIEHMDKIL-FLEN 171
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 66.1 bits (162), Expect = 7e-15
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A ALM P+L++ DEP +DP + + + L +I ++ TVI++ H ++
Sbjct: 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206
Query: 67 EARQ 70
AR+
Sbjct: 207 LARE 210
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 65.8 bits (161), Expect = 1e-14
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ RRV+ A L +PE+L+LDEPT G+DP R+ + ++ K+ T ++ TH +E
Sbjct: 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207
Query: 67 E-ARQAHTVI 75
+ AR A ++
Sbjct: 208 DAARYADQIV 217
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 66.2 bits (161), Expect = 2e-14
Identities = 28/62 (45%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG QR++S A+A + D ++++LDEPT GVDP R+SIW+ L++ +T+I++TH+++
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS--GRTIIMSTHHMD 1121
Query: 67 EA 68
EA
Sbjct: 1122 EA 1123
Score = 65.8 bits (160), Expect = 2e-14
Identities = 28/61 (45%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +R++S A+AL+ P L++LDEPT G+DP R+ +WN +V I ++G + V++T+H +E
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREG-RAVVLTSHSME 2131
Query: 67 E 67
E
Sbjct: 2132 E 2132
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 64.2 bits (157), Expect = 2e-14
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ A AL PELL+LDEP +D LR + L QI K+ N VI TH +
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193
Query: 67 EA 68
EA
Sbjct: 194 EA 195
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 64.4 bits (158), Expect = 2e-14
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVII 60
E+S GG ++RV+ A AL DPELL+ DEPT G+DP+ I + L++ K T I+
Sbjct: 136 ELS--GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI-DDLIRSLKKELGLTSIM 192
Query: 61 TTHYIEEARQA 71
TH ++ A
Sbjct: 193 VTHDLDTAFAI 203
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 63.2 bits (155), Expect = 3e-14
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
E+S GG+++RV A AL +P +L+LDEPT +D + + L ++ ++ KTV++
Sbjct: 96 NELS--GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153
Query: 61 TTHYIEEA-RQAHTVI 75
H + A R A VI
Sbjct: 154 VLHDLNLAARYADRVI 169
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 64.2 bits (157), Expect = 6e-14
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV A AL DP +L++DEP +DP+ R+ + + ++ K+ KT++ TH I+
Sbjct: 138 GGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID 197
Query: 67 EA 68
EA
Sbjct: 198 EA 199
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 63.3 bits (155), Expect = 6e-14
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P+LLI DEPT +D ++ I + L ++ ++ T++ TH +
Sbjct: 148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG 207
Query: 67 EARQ-AHTVI 75
+ A V
Sbjct: 208 VVAKIADRVA 217
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 63.1 bits (154), Expect = 6e-14
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD---GNKTVIITTH 63
GG++RRVS AV L+ DP++LILDEPT G+D +LV N+ VI+T H
Sbjct: 146 GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA----LNLVSTLSQLARRNRIVILTIH 201
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 63.9 bits (156), Expect = 7e-14
Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ+RRV+ A + +P++LILDEPT G+DP R I N + ++ K+ N T+I+ +H +E
Sbjct: 147 GGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME 206
Query: 67 E-ARQAHTVI 75
+ A+ A +I
Sbjct: 207 DVAKLADRII 216
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 62.6 bits (153), Expect = 8e-14
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
E+S GG+Q+RV+ A A++ P L++ DEPT +DP R + + L+++ D KT+II
Sbjct: 134 ELS--GGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL-NDEGKTIIIV 190
Query: 62 THYIEEARQAHTVID 76
TH E A+QA VI+
Sbjct: 191 THDPEVAKQADRVIE 205
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 62.7 bits (153), Expect = 9e-14
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
G Q++V F A++HDPELLILDEP G+DP+ + + + + ++ KTVI++TH +E
Sbjct: 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQME 189
Query: 67 EA 68
Sbjct: 190 LV 191
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 62.7 bits (153), Expect = 9e-14
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV A AL DP LL++DEP +DP+ R + ++ ++ KT++ TH I+
Sbjct: 138 GGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197
Query: 67 EA 68
EA
Sbjct: 198 EA 199
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 62.0 bits (151), Expect = 2e-13
Identities = 25/58 (43%), Positives = 42/58 (72%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65
GQ+ R A AL+H+PE+L LDEPT+G+D + +++I N L + ++ TV++T+HY+
Sbjct: 157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 62.8 bits (153), Expect = 2e-13
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
GQ+ R A AL+H P++L LDEPTVG+D + +I L + ++ TV++TTH
Sbjct: 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 62.3 bits (152), Expect = 2e-13
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A L +PE++I DE T +DP ++ I +V + K KT+I TH ++
Sbjct: 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204
Query: 67 EARQAHTVI 75
EA A VI
Sbjct: 205 EAILADKVI 213
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 61.9 bits (151), Expect = 2e-13
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++R++ A AL+ +P+LLILDEPT +D ++ I N L+++ K+ T + +H
Sbjct: 144 GGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 62.4 bits (152), Expect = 2e-13
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A L PE +I DEPT +DP R+ + N + ++ K T+I+ THY+E
Sbjct: 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME 206
Query: 67 EARQAHTVI 75
EA +A +I
Sbjct: 207 EAVEADRII 215
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 62.6 bits (153), Expect = 2e-13
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG ++RV A+AL P+LLI DEPT +D + I + L + ++ V+ TH +
Sbjct: 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216
Score = 51.8 bits (125), Expect = 1e-09
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P+LLILDEP +D ++ + N L + ++ T + +H +
Sbjct: 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491
Query: 67 EARQ-AHTVI 75
R A V
Sbjct: 492 VVRYIADRVA 501
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 61.9 bits (151), Expect = 2e-13
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL+ P++++ DEP +DP + + + L I ++ TVI+ H ++
Sbjct: 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209
Query: 67 EARQ 70
A++
Sbjct: 210 LAKK 213
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 61.8 bits (151), Expect = 3e-13
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
E+S GG ++RV+ A A+ DPELL LDEPT G+DP+ I + ++ TVI+
Sbjct: 145 ELS--GGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMV 202
Query: 62 THYIEEAR 69
TH ++
Sbjct: 203 THDLDSLL 210
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 61.0 bits (149), Expect = 4e-13
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL DP++++ DEPT +DP L + + + + ++G T+II TH +
Sbjct: 139 GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG-MTMIIVTHEMG 197
Query: 67 EARQ-AHTVI 75
AR+ A VI
Sbjct: 198 FAREVADRVI 207
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 61.5 bits (150), Expect = 4e-13
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q+RV A AL DP++L++DE +DPL+R+ + + L+++ + KT++ TH ++
Sbjct: 163 GGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD 222
Query: 67 EA 68
EA
Sbjct: 223 EA 224
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 61.0 bits (149), Expect = 6e-13
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV A AL + +L+LDEPT +D + + L + ++ TV++ H +
Sbjct: 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN 200
Query: 67 EA-RQAHTVI 75
A R A +I
Sbjct: 201 LAARYADHLI 210
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 60.9 bits (148), Expect = 8e-13
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
S+G +QR V A AL+HDP++LILDEPT G+DP I N + I KD KT+I++TH
Sbjct: 135 SKGYRQR-VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD--KTIILSTHI 191
Query: 65 IEE 67
++E
Sbjct: 192 MQE 194
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 61.0 bits (149), Expect = 1e-12
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+QRR+ A AL+HD LL+LDEPT G+D + I L + ++ KTV++ TH
Sbjct: 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN--KTVLMITH 532
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 59.7 bits (145), Expect = 1e-12
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+RV+ A AL+ +P++L+LDEP +D ++ + L +I K+ TV+ TH E
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
Query: 67 EAR 69
EA
Sbjct: 192 EAW 194
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 59.1 bits (144), Expect = 1e-12
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+++RVS A+ L+ +P LL LDEPT G+D + + L ++ G +T+I + H
Sbjct: 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTG-RTIICSIH 169
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 59.8 bits (145), Expect = 2e-12
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG ++RV A AL +P+LL+LDEP +D L R+ + L+ + ++ K V++ TH IE
Sbjct: 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194
Query: 67 EA 68
EA
Sbjct: 195 EA 196
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 59.5 bits (145), Expect = 2e-12
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GQQRR+ A AL P+LL+LDEP G++P + + + ++ G T+++ H
Sbjct: 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEH 208
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 59.2 bits (144), Expect = 2e-12
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL P+L++ DEP +DP + + ++L +I K+ TVII H ++
Sbjct: 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207
Query: 67 EAR 69
A+
Sbjct: 208 LAK 210
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 59.7 bits (145), Expect = 2e-12
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q+RV A AL +DP++L++DE +DPL+R + + L+++ KT++ TH ++
Sbjct: 167 GGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226
Query: 67 EA 68
EA
Sbjct: 227 EA 228
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 59.6 bits (145), Expect = 3e-12
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ +R++ A AL+ LL+LDEPT +D Q I L ++ K KTV++ TH +E
Sbjct: 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLE 516
Query: 67 EARQAHTVI 75
+A A ++
Sbjct: 517 DAADADRIV 525
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 58.3 bits (142), Expect = 3e-12
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL +P++++ DEPT +DP L + + + + ++G T+++ TH +
Sbjct: 138 GGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG-MTMVVVTHEMG 196
Query: 67 EARQ-AHTVI 75
AR+ A VI
Sbjct: 197 FAREVADRVI 206
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 59.5 bits (145), Expect = 3e-12
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ P++L+LDE T +DP I +L+QI +TVII H +
Sbjct: 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI--LQGRTVIIIAHRLS 669
Query: 67 EARQAHTVI 75
R A +I
Sbjct: 670 TIRSADRII 678
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 58.5 bits (142), Expect = 4e-12
Identities = 21/61 (34%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
G +++V+ A AL+HDP +L+LDEPT G+D + +++ + Q+ + K ++ +TH ++E
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQE 198
Query: 68 A 68
Sbjct: 199 V 199
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 58.2 bits (142), Expect = 4e-12
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+ ++ A ALM P+LL+LDEP+ G+ P + + I+ + ++ +G T+++
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG-VTILLVEQNAR 193
Query: 67 EARQ 70
A +
Sbjct: 194 FALE 197
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 58.9 bits (143), Expect = 4e-12
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ+RRV+ A L +P+ L+ DEPT G+DP + I + K G KT+I+ TH
Sbjct: 168 GGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQG-KTIILVTH 223
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 57.7 bits (140), Expect = 7e-12
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI---ITTH 63
GGQQ+RV+ A ALM +P++L+ DEPT +DP I +V I ++ +T I I TH
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDP----EITAQIVSIIRELAETGITQVIVTH 199
Query: 64 YIEEARQAHT 73
+E AR+ +
Sbjct: 200 EVEVARKTAS 209
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 58.5 bits (142), Expect = 7e-12
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD---GNKTVIITTH 63
GG+++R++FA L+ DP LL DEPT G+D + S+ VQ+ K KT+I T H
Sbjct: 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSV----VQVLKGLAQKGKTIICTIH 224
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 57.3 bits (139), Expect = 8e-12
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ +LLI DEPT G+D + + + ++ G K VI+ TH E
Sbjct: 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG-KAVIVITHDYE 187
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 57.9 bits (140), Expect = 9e-12
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q+RV A AL +P++L++DE +DPL+R S+ + L ++ KT++ TH ++
Sbjct: 132 GGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191
Query: 67 EA 68
EA
Sbjct: 192 EA 193
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 57.7 bits (139), Expect = 1e-11
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RVS A AL +PE+L+ DEPT +DP L + + Q+ ++G KT+++ TH +
Sbjct: 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEMG 213
Query: 67 EARQAHT 73
AR +
Sbjct: 214 FARHVSS 220
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 57.4 bits (139), Expect = 1e-11
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
G +++V+ A AL+HDP +L+LDEPT G+D R+ + + Q K+ + VI ++H ++E
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ-LKNEGRAVIFSSHIMQE 195
Query: 68 A 68
Sbjct: 196 V 196
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 56.9 bits (138), Expect = 1e-11
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+RV+ A A+++ P LL+ DEPT +DP L + I + L ++ K G TVI+ TH +
Sbjct: 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGT-TVIVATHDLS 198
Query: 67 EARQAH 72
+
Sbjct: 199 LVDRVA 204
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 57.7 bits (140), Expect = 1e-11
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG++RR++ A AL+HD L +LDEPT G+DP+ + + L + + KT+++ TH +
Sbjct: 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEG--KTLLMVTHRLR 534
Query: 67 EARQAHTVI 75
+ +I
Sbjct: 535 GLERMDRII 543
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 57.1 bits (138), Expect = 1e-11
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+ +RVS A L ++PE+L+LDEPT +DP + I +V++ N TVI TH +E
Sbjct: 134 GGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME 193
Query: 67 EARQ 70
+A++
Sbjct: 194 QAKR 197
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 57.1 bits (138), Expect = 2e-11
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ R+++ L +P++++LDEPT G+DP ++ + L + D NKT+I+ +H +
Sbjct: 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207
Query: 67 E-ARQAHTVI 75
E AR A VI
Sbjct: 208 EVARYADEVI 217
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 57.2 bits (139), Expect = 2e-11
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG ++RV A+AL +P+LLI DEPT +D ++ I + L ++ ++ +I+ TH +
Sbjct: 156 GGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG 215
Query: 67 EARQ-AHTVIDNYD 79
+ A V Y
Sbjct: 216 VVAEIADRVAVMYA 229
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 57.1 bits (138), Expect = 2e-11
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A L +P+++ILDE T +DP ++ I + ++ K N TVI TH I+
Sbjct: 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205
Query: 67 EARQAHTVI 75
EA A V+
Sbjct: 206 EANMADQVL 214
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 56.9 bits (138), Expect = 2e-11
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A L P+++ILDE T +DP R+ + + Q+ + TV+ TH ++
Sbjct: 143 GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202
Query: 67 EARQAHTVI 75
EA QA VI
Sbjct: 203 EAAQADRVI 211
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 56.5 bits (137), Expect = 2e-11
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+Q+RV+ A A+++ P +L+ DEPT +DP L I +I + G TV++ TH
Sbjct: 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGT-TVLMATH 195
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 56.7 bits (138), Expect = 2e-11
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GQQRR+ A AL DP+LL+LDEP G++P + + + ++ + G TV++ H
Sbjct: 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG-ITVLLVEH 201
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 56.6 bits (137), Expect = 2e-11
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV A AL +P+LL+LDEP +D R+ + L+++ ++ K V++ TH IE
Sbjct: 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190
Query: 67 EA 68
EA
Sbjct: 191 EA 192
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 55.5 bits (134), Expect = 3e-11
Identities = 25/62 (40%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ A A+ P++L+LDEPT G+DP R+ + L ++ +G TV+I+TH ++
Sbjct: 130 GGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGM-TVVISTHDVD 188
Query: 67 EA 68
A
Sbjct: 189 LA 190
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 56.6 bits (137), Expect = 3e-11
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV+ A L PE+++LDEPT G+DP+ I L + K+G T+II+TH
Sbjct: 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG-ITIIISTH 195
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 55.6 bits (135), Expect = 4e-11
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL ++PE+L+LDEPT +DP+ I + ++ K+ T++I TH ++
Sbjct: 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQ 201
Query: 67 EA 68
+A
Sbjct: 202 QA 203
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 56.0 bits (135), Expect = 4e-11
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ+RRV+ A L PE+LI DEPT G+DP + L+ K NKTV + TH +E
Sbjct: 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTME 237
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 56.1 bits (136), Expect = 5e-11
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL ++P++L+ DE T +DP QSI L I ++ T+++ TH +E
Sbjct: 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 55.7 bits (135), Expect = 5e-11
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL+ P++ +LDEP +D LR + + + ++ + T I TH
Sbjct: 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195
Query: 67 EA 68
EA
Sbjct: 196 EA 197
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 55.5 bits (134), Expect = 6e-11
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL P+L++ DEPT +DP LR + + + ++G T++I TH I
Sbjct: 139 GGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG-MTMVIVTHEIG 197
Query: 67 EARQ 70
A +
Sbjct: 198 FAEK 201
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 54.8 bits (132), Expect = 8e-11
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD---GNKTVIITTH 63
GGQQ+RV+ A ALM +P++L+ DEPT +DP I +V I K+ T +I TH
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDP----EITAQIVSIIKELAETGITQVIVTH 199
Query: 64 YIEEARQAHT 73
+E AR+ +
Sbjct: 200 EVEVARKTAS 209
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 55.4 bits (134), Expect = 9e-11
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ +R++ A A + D LL+LDEPT +D + L + + +TV++ TH +
Sbjct: 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLA 518
Query: 67 EARQAHTVID 76
A A ++
Sbjct: 519 LAALADRIVV 528
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 54.4 bits (132), Expect = 9e-11
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R+S A A+ D ++ +LD+P VD + + I+ + + NKT I+ TH ++
Sbjct: 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189
Query: 67 EARQAHTVI 75
A ++
Sbjct: 190 LLPHADQIV 198
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 55.5 bits (134), Expect = 9e-11
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ +P +LI DE T +D I ++ +I + +TVII H +
Sbjct: 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR--GRTVIIIAHRLS 653
Query: 67 EARQAHTVI 75
R +I
Sbjct: 654 TVRACDRII 662
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 54.6 bits (132), Expect = 1e-10
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL+++P++L+LDEP +D LR+ + L ++ K+ T + TH E
Sbjct: 133 GGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192
Query: 67 EA 68
EA
Sbjct: 193 EA 194
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 54.1 bits (131), Expect = 1e-10
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 9/67 (13%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPL----LRQSIWNHLVQITKDGNKTVIITTH 63
G ++R+ A+AL+ +P+LLILDEPT G+DP LR+ I + +D TV+I++H
Sbjct: 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL-----RDQGITVLISSH 184
Query: 64 YIEEARQ 70
+ E ++
Sbjct: 185 LLSEIQK 191
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 54.4 bits (131), Expect = 1e-10
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG ++RV+ A AL P++L+LDEP +D L R ++ L+QI ++ TV++ TH ++
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176
Query: 67 EA 68
EA
Sbjct: 177 EA 178
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 54.1 bits (131), Expect = 1e-10
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ++++ A AL+ P+LL+LDEPT G+ P + + I + ++ +G +++ Y++
Sbjct: 134 GGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193
Query: 67 EARQA 71
AR+
Sbjct: 194 FAREL 198
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 54.3 bits (131), Expect = 2e-10
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVII 60
S+G QQ+ + F A++H+PELLILDEP G+DP LL+ +I+ K+ T+I
Sbjct: 132 SKGNQQK-IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE-----LKEEGATIIF 185
Query: 61 TTHYIEEA 68
++H +E
Sbjct: 186 SSHRMEHV 193
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 53.2 bits (129), Expect = 2e-10
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q++V A L DP +LILDEPT GVD + I+ + ++ G K V++ + ++
Sbjct: 107 GGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG-KAVLLISSELD 165
Query: 67 EARQ 70
E
Sbjct: 166 ELLG 169
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 54.4 bits (132), Expect = 2e-10
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q++V A L DP++LILDEPT G+D + I+ + ++ +G K +++ + +
Sbjct: 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEG-KAILMISSELP 462
Query: 67 EA 68
E
Sbjct: 463 EL 464
Score = 41.3 bits (98), Expect = 9e-06
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
Q++ V A AL D +LILDEPT + + +++ + ++ G +I +H ++
Sbjct: 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQG-VAIIYISHRLD 206
Query: 67 EARQ 70
E +
Sbjct: 207 EVFE 210
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 54.1 bits (130), Expect = 2e-10
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GQ++RV+ A L+ +P++L+LDEPT G+DP+ I LV++ K+ T+II TH I+
Sbjct: 145 GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 53.8 bits (129), Expect = 2e-10
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL +PE+++LDEPT +DP+ Q I L ++++ N T++I TH I
Sbjct: 149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG 206
Query: 67 EA 68
+A
Sbjct: 207 QA 208
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 53.7 bits (130), Expect = 3e-10
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG++RRV A AL +P+ L+LDEP GVDP+ Q I +++I KD V+IT H +
Sbjct: 136 GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI-QKIIKILKDRGIGVLITDHNVR 194
Query: 67 E 67
E
Sbjct: 195 E 195
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 54.0 bits (130), Expect = 3e-10
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RVS A ALM+ ++++ DEPT +D + + L Q+ G+ TVII TH +
Sbjct: 147 GGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH-TVIIVTHDPQ 205
Query: 67 EARQAHTVIDNYD 79
A QA VI+ D
Sbjct: 206 VAAQAERVIEIRD 218
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 53.9 bits (130), Expect = 3e-10
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+++R++ A AL+ D +L+LDEPT +D + L+ G V+IT H
Sbjct: 474 GGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAAL-SGRTVVLITHH 529
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 53.6 bits (129), Expect = 4e-10
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q+RV A A + +L++DEP +DPL+R + + L+++ KT++ +H ++
Sbjct: 167 GGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLD 226
Query: 67 EA 68
EA
Sbjct: 227 EA 228
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 52.8 bits (127), Expect = 4e-10
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
G ++R+ A+AL++ P+LLILDEPT G+DP+ Q + + + G TVI+++H + E
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG-ITVILSSHILSE 186
Query: 68 ARQ 70
+Q
Sbjct: 187 VQQ 189
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 52.6 bits (126), Expect = 5e-10
Identities = 23/63 (36%), Positives = 42/63 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A L+ +L+LDEP +DPLLR+ + + Q+ + +T+++ TH++
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 67 EAR 69
+AR
Sbjct: 191 DAR 193
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 53.3 bits (128), Expect = 5e-10
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ RRV+ A + ++PE+L LDEP G+DP R+ + K G+ TVI+ TH
Sbjct: 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGH-TVILVTH 203
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 53.1 bits (127), Expect = 5e-10
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL DPE+L+ DEPT +DP+ SI L+ K+ T++I TH ++
Sbjct: 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EELISDLKN-KVTILIVTHNMQ 221
Query: 67 EA 68
+A
Sbjct: 222 QA 223
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 52.8 bits (127), Expect = 5e-10
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ RRV+ A L +P++L+LDEPT G+DP R+ + ++ + G T+++ TH ++
Sbjct: 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG-MTIVLVTHLMD 206
Query: 67 E 67
+
Sbjct: 207 D 207
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 52.8 bits (127), Expect = 5e-10
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL +PE+++ DEPT +DP L + + + ++G +T+++ TH +
Sbjct: 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG-RTMVVVTHEMG 213
Query: 67 EARQ 70
AR
Sbjct: 214 FARD 217
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 52.7 bits (127), Expect = 6e-10
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL +PE+L+LDEPT +DP+ I + ++ K T++I TH ++
Sbjct: 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ 204
Query: 67 EAR 69
+A
Sbjct: 205 QAA 207
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 52.5 bits (126), Expect = 7e-10
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL +PE+L++DEP +DP+ Q I L+ K T+II TH ++
Sbjct: 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKI-EELIHELK-ARYTIIIVTHNMQ 209
Query: 67 EA 68
+A
Sbjct: 210 QA 211
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 52.7 bits (126), Expect = 7e-10
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+S GGQQ+R+ A A+ +PE+L+LDEP +DP+ + + +V++ KD T+ + T
Sbjct: 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD--YTIALVT 205
Query: 63 HYIEEARQ 70
H +++A +
Sbjct: 206 HNMQQAIR 213
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 52.4 bits (126), Expect = 7e-10
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A L+ + +L+LDEP +DP LR + + Q+ + T+++ TH+ E
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE 191
Query: 67 EARQ 70
+A +
Sbjct: 192 DAAR 195
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 52.7 bits (127), Expect = 7e-10
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL+ +P++L+LDEP +D LR+ + L ++ ++ T + TH E
Sbjct: 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198
Query: 67 EA 68
EA
Sbjct: 199 EA 200
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 52.2 bits (126), Expect = 8e-10
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV A AL ++P++L+ DE T +DP QSI L I ++ T+++ TH +E
Sbjct: 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202
Query: 67 EARQ 70
++
Sbjct: 203 VVKR 206
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 52.4 bits (125), Expect = 8e-10
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ RRV+ A L +PE+L+LDEPT G+DP R + I + G +TV++ TH ++
Sbjct: 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG-QTVVLVTHLMD 205
Query: 67 E 67
+
Sbjct: 206 D 206
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 52.1 bits (126), Expect = 9e-10
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+ ++ A ALM P+LL+LDEP+ G+ P + + I+ + ++ K+G T+++
Sbjct: 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198
Query: 67 EARQ 70
A +
Sbjct: 199 FALE 202
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 52.4 bits (126), Expect = 9e-10
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ D ++LILDE T +D + + I N+L+ + +KT+I H +
Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ---DKTIIFVAHRLS 670
Query: 67 EARQAHTVI 75
A+Q+ +I
Sbjct: 671 VAKQSDKII 679
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 52.1 bits (125), Expect = 1e-09
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ A + +P++L+LDEPT G+DP + + + L + + TVI +TH ++
Sbjct: 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 51.5 bits (124), Expect = 1e-09
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A++ +P++ ++DEP +D LR + L ++ + T I TH
Sbjct: 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192
Query: 67 EA 68
EA
Sbjct: 193 EA 194
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 52.0 bits (125), Expect = 1e-09
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL P LL+LDEP +D +R+ + + Q+ + T I+ TH E
Sbjct: 137 GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196
Query: 67 EA 68
EA
Sbjct: 197 EA 198
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 50.5 bits (122), Expect = 1e-09
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
G+++ V A AL + LLILDEPT + P + ++ + ++ G VI +H ++
Sbjct: 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG-VAVIFISHRLD 143
Query: 67 EARQ-AHTVI 75
E + A V
Sbjct: 144 EVFEIADRVT 153
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 51.4 bits (124), Expect = 2e-09
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG++RRV A AL +P+ ++LDEP GVDP+ I +++ KD V+IT H +
Sbjct: 142 GGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR-IIKHLKDRGIGVLITDHNVR 200
Query: 67 E 67
E
Sbjct: 201 E 201
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 51.3 bits (123), Expect = 2e-09
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL PE+++ DEPT +DP L + N + Q+ ++ +T++I TH +
Sbjct: 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMS 205
Query: 67 EAR 69
AR
Sbjct: 206 FAR 208
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.1 bits (122), Expect = 2e-09
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL PE+L+ DEPT +DP I + +++ KD T+++ TH+ +
Sbjct: 149 GGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQ 206
Query: 67 EA 68
+A
Sbjct: 207 QA 208
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 51.0 bits (122), Expect = 2e-09
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ A L+ D +L+LDEP +DP LR + + ++ + + TV++ TH E
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190
Query: 67 EAR 69
+A+
Sbjct: 191 DAK 193
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 49.8 bits (120), Expect = 3e-09
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG++ R++ A L+ +P LL+LDEPT +D +++ L K+ TVI+ +H
Sbjct: 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL----KEYPGTVILVSH 125
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 50.8 bits (122), Expect = 3e-09
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL +PE+L++DEPT +DP+ I + ++ KD T++I TH ++
Sbjct: 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD--YTIVIVTHNMQ 206
Query: 67 EA 68
+A
Sbjct: 207 QA 208
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 50.9 bits (122), Expect = 3e-09
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A L +P ++ILDE T +DP RQ++ + + ++ + N T+I TH +
Sbjct: 145 GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204
Query: 67 EARQAHTVI 75
EA +A VI
Sbjct: 205 EAMEADHVI 213
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 50.6 bits (121), Expect = 4e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL+ P++L+LDEP +D LR + L I + T + TH E
Sbjct: 103 GGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162
Query: 67 EA 68
EA
Sbjct: 163 EA 164
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 50.4 bits (121), Expect = 4e-09
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL+H P LL+LDEP +D L R + + + + + TV++ TH +
Sbjct: 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195
Query: 67 EA 68
EA
Sbjct: 196 EA 197
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 50.7 bits (121), Expect = 5e-09
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P++L+ DE T +DP QSI L +I + T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 50.4 bits (121), Expect = 5e-09
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P++L+LDEP +D +R+ + L ++ T + TH E
Sbjct: 140 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE 199
Query: 67 EAR 69
EA
Sbjct: 200 EAL 202
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 50.2 bits (120), Expect = 5e-09
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+S GGQQ+R+ A L +PE++++DEP +DP+ I + + + K+ TVII T
Sbjct: 148 LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKE--YTVIIVT 205
Query: 63 HYIEEARQA 71
H +++A +
Sbjct: 206 HNMQQAARV 214
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 49.8 bits (119), Expect = 6e-09
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+H+P +LI DE T +D +I ++ I +TVII H +
Sbjct: 141 GGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS 198
Query: 67 EARQAHTVI 75
+ A +I
Sbjct: 199 TVKNADRII 207
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 49.7 bits (119), Expect = 6e-09
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
E+S GG+Q+RV+ A A+++ P +LI DEPT +DP I N L +I K G TV++
Sbjct: 135 AELS--GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGT-TVVV 191
Query: 61 TTH 63
TH
Sbjct: 192 ATH 194
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 50.0 bits (119), Expect = 7e-09
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ+RRV+ A + D L+LDEPT G+DP + N ++ K+ K +I+ TH ++
Sbjct: 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD 212
Query: 67 EA-RQAHTVI 75
+ R A VI
Sbjct: 213 QVLRIADEVI 222
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 49.9 bits (119), Expect = 7e-09
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A L +PE+L+LDEPT +DP I L+Q + G+ T++I TH ++
Sbjct: 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI-EDLIQELR-GSYTIMIVTHNMQ 242
Query: 67 EA 68
+A
Sbjct: 243 QA 244
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 49.9 bits (120), Expect = 7e-09
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
G+Q+RV AL LLILDEPT + P ++ L ++ +G KT+I TH ++E
Sbjct: 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEG-KTIIFITHKLKE 202
Query: 68 ARQ-AHTV 74
A V
Sbjct: 203 VMAIADRV 210
Score = 32.1 bits (74), Expect = 0.014
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GG Q+++ A L P+LLI +PT G+D
Sbjct: 406 GGNQQKLILARELARRPDLLIAAQPTRGLD 435
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 49.6 bits (118), Expect = 8e-09
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG ++RV A AL +P++L++DE +DPL+R + + LV++ +T++ +H ++
Sbjct: 167 GGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226
Query: 67 EA 68
EA
Sbjct: 227 EA 228
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 49.2 bits (117), Expect = 1e-08
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+S GGQQ+RV A L P++++LDEPT +DP+ I N L+++ T+I+ T
Sbjct: 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVT 204
Query: 63 HYIEEA 68
H + +A
Sbjct: 205 HSMHQA 210
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 48.4 bits (116), Expect = 1e-08
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R+ A AL +P +L+LDEP +D +++ N + K T I+ H E
Sbjct: 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL-NQAIAALKAAGATRIVIAHRPE 157
Query: 67 EARQAHTVI 75
A ++
Sbjct: 158 TLASADRIL 166
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 47.3 bits (113), Expect = 1e-08
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPT 32
GGQ++RV+ A AL+ P+LL+LDEPT
Sbjct: 93 GGQKQRVAIARALLKKPKLLLLDEPT 118
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 49.3 bits (117), Expect = 1e-08
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
S GGQ++R++ A AL+ +P++L+LDE T +D + I +V I +KT+I H
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
Query: 64 YIEEARQAHTVI 75
I +++ ++
Sbjct: 1418 RIASIKRSDKIV 1429
Score = 47.3 bits (112), Expect = 6e-08
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITT 62
GGQ++R+S A A++ +P++LILDE T +D L++++I N + + N+ II
Sbjct: 582 GGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN----LKGNENRITIIIA 637
Query: 63 HYIEEARQAHTV 74
H + R A+T+
Sbjct: 638 HRLSTIRYANTI 649
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 49.1 bits (117), Expect = 1e-08
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A L DPE++++DEP +DP+ I + + ++ ++ TV++ TH ++
Sbjct: 203 GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE--YTVVVVTHNMQ 260
Query: 67 EA 68
+A
Sbjct: 261 QA 262
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 49.1 bits (117), Expect = 1e-08
Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A + +P+++++DEPT +DP+ I + ++ K N T++I TH ++
Sbjct: 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQ 205
Query: 67 EARQ 70
+AR+
Sbjct: 206 QARR 209
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 49.0 bits (116), Expect = 1e-08
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A A+ +PE+L++DEPT +DP+ I ++++ K ++II TH +
Sbjct: 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA 285
Query: 67 EARQ 70
+A++
Sbjct: 286 QAQR 289
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 48.7 bits (117), Expect = 2e-08
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R+ A AL +P+L++ DEP +D ++ I N L + ++ T + +H +
Sbjct: 112 GGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171
Query: 67 EARQAHTVI 75
R I
Sbjct: 172 VVRYISDRI 180
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 48.8 bits (116), Expect = 2e-08
Identities = 21/62 (33%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A + P+++++DEPT +DP+ I + +V++ K+ T++I TH ++
Sbjct: 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKE--YTIVIVTHNMQ 207
Query: 67 EA 68
+A
Sbjct: 208 QA 209
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 48.9 bits (117), Expect = 2e-08
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
GQQR AL+ P LLILDEP G+DPL RQ + + + +G ++ +H+ E+
Sbjct: 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED 464
Query: 68 ARQAHT 73
A T
Sbjct: 465 APACIT 470
Score = 40.0 bits (94), Expect = 2e-05
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
G+ R+ ALM +P+LLILDEP G+D RQ + L + + G V++
Sbjct: 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 48.6 bits (116), Expect = 2e-08
Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A A+ DPE++++DEP +DP+ I + + ++ ++ TV+I TH ++
Sbjct: 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE--YTVVIVTHNMQ 240
Query: 67 EA 68
+A
Sbjct: 241 QA 242
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 48.7 bits (117), Expect = 2e-08
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GQ +R++ A AL+ +LL+LDEPT +D Q + L ++ +T ++ TH +E
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRR--QTTLMVTHQLE 545
Query: 67 EARQAHTV 74
+ Q +
Sbjct: 546 DLAQWDQI 553
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 48.2 bits (115), Expect = 2e-08
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A A+ P++L++DEP +DP+ + + ++ K N T+II TH ++
Sbjct: 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQ 223
Query: 67 EARQA 71
+A +A
Sbjct: 224 QAARA 228
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 48.6 bits (116), Expect = 2e-08
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ P +LILDE T +D Q L + ++TV++ H +
Sbjct: 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQL----LQESRSRASRTVLLIAHRLS 675
Query: 67 EARQAHTVI 75
+A ++
Sbjct: 676 TVERADQIL 684
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 48.4 bits (116), Expect = 2e-08
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A A+++ P++L+LDE +D LR+ + N L + + T + TH E
Sbjct: 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206
Query: 67 EA 68
EA
Sbjct: 207 EA 208
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 47.9 bits (115), Expect = 3e-08
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL PE+L++DEPT +DP+ I L+ K T++I TH ++
Sbjct: 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKK-KYTIVIVTHNMQ 209
Query: 67 EA 68
+A
Sbjct: 210 QA 211
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 47.9 bits (114), Expect = 3e-08
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A A+ P +L++DEP +DP+ I N L+Q K N T+I+ TH ++
Sbjct: 152 GGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN-LIQELKK-NFTIIVVTHSMK 209
Query: 67 EARQ 70
+A++
Sbjct: 210 QAKK 213
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 48.1 bits (114), Expect = 3e-08
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL +PE+L++DEPT +DP I + + + K T+II TH +
Sbjct: 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMH 208
Query: 67 EA 68
+A
Sbjct: 209 QA 210
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 48.3 bits (116), Expect = 3e-08
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 1 MEISSRG-----GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGN 55
M+I RG GQ++ V+ A AL+ DP +L+LDEPT +D + + L +
Sbjct: 593 MQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAG-- 650
Query: 56 KTVIITTH 63
KT+++ TH
Sbjct: 651 KTLVLVTH 658
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 48.1 bits (114), Expect = 3e-08
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL P+LL+LDEPT +DP+ I L +++ N ++I+ TH ++
Sbjct: 145 GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNMQ 202
Query: 67 EARQ 70
+ ++
Sbjct: 203 QGKR 206
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 47.7 bits (113), Expect = 4e-08
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+S GGQQ+R+ A L P++++ DEPT +DP+ I + ++ + KD T++I T
Sbjct: 153 LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD--YTIVIVT 210
Query: 63 HYIEEA 68
H +++A
Sbjct: 211 HNMQQA 216
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 47.8 bits (113), Expect = 4e-08
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 2 EISSRGGQQRRVSFAVALMHDPE---LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTV 58
IS G +R ++ +AL+ LL++DEP G+ P L + + L++ + +
Sbjct: 189 GISD--GTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVE-LLKELSEKGAQL 245
Query: 59 IITTH 63
I TTH
Sbjct: 246 IFTTH 250
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 47.8 bits (114), Expect = 4e-08
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 6 RGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65
GGQ++R++ A AL+ +P +LILDE T +D I + L ++ K +T +I H +
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL 524
Query: 66 EEARQAHTVI 75
+ A +I
Sbjct: 525 STIKNADRII 534
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 47.7 bits (113), Expect = 5e-08
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+S GGQQ+R+ A L P +L+LDEP +DP+ I + ++ ++ ++II T
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEE--YSIIIVT 220
Query: 63 HYIEEA 68
H +++A
Sbjct: 221 HNMQQA 226
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 47.4 bits (113), Expect = 5e-08
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG ++RV A+AL+ P+LLI DEPT +D ++ I L ++ ++ N +I+ TH
Sbjct: 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 47.5 bits (113), Expect = 5e-08
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL P++++ DE T +DP L + N + ++ + + T+++ TH
Sbjct: 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH--- 205
Query: 67 EARQAHTVID 76
E A D
Sbjct: 206 EMGFAREFAD 215
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 47.2 bits (113), Expect = 6e-08
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG +RRV+ A AL+ +P+LL+LDEPT +D +SI L K TVI+ +H
Sbjct: 156 GGWRRRVALARALLEEPDLLLLDEPTNHLD---LESI-EWLEDYLKRYPGTVIVVSH 208
Score = 43.8 bits (104), Expect = 1e-06
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG++ R+ A L+ P LL+LDEPT +D ++ L + D TV++ +H
Sbjct: 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA----LEEALLDFEGTVLLVSH 494
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 47.2 bits (112), Expect = 7e-08
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
S GG++RRV A AL +P+ ++LDEP GVDP+ I +++ +D V+IT H
Sbjct: 137 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI-KRIIEHLRDSGLGVLITDH 195
Query: 64 YIEE 67
+ E
Sbjct: 196 NVRE 199
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 47.1 bits (112), Expect = 7e-08
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A +L P+LL+LDEP +D LR + +V I + T ++ TH E
Sbjct: 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211
Query: 67 EA 68
EA
Sbjct: 212 EA 213
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 47.2 bits (112), Expect = 7e-08
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A L +P+++++DEPT +DP+ + LVQ K + ++II TH ++
Sbjct: 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKV-EELVQELKK-DYSIIIVTHNMQ 227
Query: 67 EA 68
+A
Sbjct: 228 QA 229
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.9 bits (111), Expect = 7e-08
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A A+ P +L++DEP +DP+ + + ++ KD T++I TH ++
Sbjct: 149 GGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKD--YTIVIVTHNMQ 206
Query: 67 EA 68
+A
Sbjct: 207 QA 208
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 46.8 bits (112), Expect = 7e-08
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITT 62
GGQ++R++ A AL+ DP +LILDE T +D L++ ++ L++ N+T +
Sbjct: 141 GGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL-ERLMK-----NRTTFVIA 194
Query: 63 HYIEEARQAHTVI 75
H + A ++
Sbjct: 195 HRLSTIENADRIV 207
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 46.9 bits (111), Expect = 7e-08
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL P++++LDEPT +DP+ I L+++ T I+ TH ++
Sbjct: 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ--YTFIMVTHNLQ 207
Query: 67 EA 68
+A
Sbjct: 208 QA 209
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 46.7 bits (111), Expect = 8e-08
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GQ++RV+ A L DP++++LDEP +DP ++++ L ++ G KTVI+ TH
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG-KTVIVATH 196
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 46.4 bits (110), Expect = 1e-07
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+S GGQQ+R+ A AL +P++L++DEPT +DP+ + I L+ K+ T++I T
Sbjct: 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI-EELILKLKE-KYTIVIVT 211
Query: 63 HYIEEA 68
H +++A
Sbjct: 212 HNMQQA 217
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 46.5 bits (110), Expect = 1e-07
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A ALM ++++ DEP +DP + + + L I ++ TV++T H ++
Sbjct: 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214
Query: 67 EA----------RQAHTVID 76
A RQ H D
Sbjct: 215 YALRYCERIVALRQGHVFYD 234
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 46.8 bits (111), Expect = 1e-07
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+++RVS A ++ +P LLILDEPT G+D + L + + G KT++ + H
Sbjct: 209 GGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKG-KTIVTSMH 264
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 46.6 bits (111), Expect = 1e-07
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ AL+ PELL++DEP +D ++ I +L ++ + N ++ +H ++
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190
Query: 67 E-ARQAHTVI 75
E R A V+
Sbjct: 191 EVLRLADRVV 200
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 46.3 bits (110), Expect = 1e-07
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV A L P++++LDEPT +DP+ I L+ + D T+++ T ++
Sbjct: 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD--YTMLLVTRSMQ 208
Query: 67 EA 68
+A
Sbjct: 209 QA 210
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 46.0 bits (109), Expect = 1e-07
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV A AL P +L+LDEP G+D ++ + +++ G +++TTH +
Sbjct: 116 GGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT-AILMTTHDLA 174
Query: 67 EA 68
+A
Sbjct: 175 QA 176
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 46.2 bits (110), Expect = 1e-07
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++ +S +A +H P++L+LDE T +DP + + +I ++ T ++ TH +E
Sbjct: 151 GGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210
Query: 67 EA 68
+A
Sbjct: 211 DA 212
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 45.8 bits (109), Expect = 1e-07
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV+ A AL+H P+L++ DEPT +D + + + ++ ++ T++I TH
Sbjct: 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 45.8 bits (109), Expect = 2e-07
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P++L+LDEP +D +R+ + L ++ + + T + TH E
Sbjct: 139 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198
Query: 67 EA 68
EA
Sbjct: 199 EA 200
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 46.2 bits (110), Expect = 2e-07
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
GGQ++R++ A AL DP+L++LDEP +D Q++ N + + G V+IT
Sbjct: 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVIT 511
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 45.7 bits (109), Expect = 2e-07
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 1 MEISSRG-----GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGN 55
++I RG GQ++ V+ A AL++DP +L+LDEPT +D + + L Q+ D
Sbjct: 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-- 189
Query: 56 KTVIITTH 63
KT+II TH
Sbjct: 190 KTLIIITH 197
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 45.6 bits (108), Expect = 2e-07
Identities = 19/48 (39%), Positives = 34/48 (70%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG 54
GG+Q+ ++ ALM P LL+LDEP++G+ P++ Q I++ + Q+ + G
Sbjct: 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG 187
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 45.8 bits (109), Expect = 2e-07
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG 54
GG Q++V+ A LM P++LILDEPT GVD ++ I+ + Q +G
Sbjct: 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG 445
Score = 25.7 bits (57), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPT 32
G+Q+ V A L + +++I+DEPT
Sbjct: 145 GEQQMVEIAKVLSFESKVIIMDEPT 169
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 45.6 bits (108), Expect = 2e-07
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++R+ A AL P++L++DEPT +DP+ I L ++ K+ T+++ TH
Sbjct: 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTH 206
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 45.7 bits (109), Expect = 2e-07
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV A+AL ++P+LLI DEPT +D ++ I + L ++ + ++ TH
Sbjct: 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216
Score = 38.8 bits (91), Expect = 7e-05
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ PEL++LDEPT +D ++ + + L + + + + +H +
Sbjct: 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488
Query: 67 EARQ-AHTVI 75
R H VI
Sbjct: 489 VVRALCHRVI 498
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 45.9 bits (109), Expect = 2e-07
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A A+ P+++ILDE T +DP R + + I D TVI TH ++
Sbjct: 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202
Query: 67 E 67
E
Sbjct: 203 E 203
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 45.8 bits (108), Expect = 2e-07
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+S GGQQ+R+ A L +P ++++DEPT +DP+ I ++ + + + T+II T
Sbjct: 149 LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVT 206
Query: 63 HYIEEA 68
H +++A
Sbjct: 207 HNMQQA 212
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 45.3 bits (108), Expect = 2e-07
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
G+++ ++ A A++ DP++LILDE T +D + I L ++ K +T II H +
Sbjct: 143 GERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLST 200
Query: 68 ARQAHTVI 75
+ A ++
Sbjct: 201 IKNADKIL 208
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 45.6 bits (108), Expect = 3e-07
Identities = 18/57 (31%), Positives = 37/57 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
G++ RV+ A L+ +P ++ILDEPT +DP+ + + + +++ ++ +T II +H
Sbjct: 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486
Score = 44.4 bits (105), Expect = 7e-07
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV A L +P L + DEPT +DP + + N L + K ++++T+H+ E
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 45.4 bits (107), Expect = 3e-07
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GQ++RV+ A AL+ L+LDEPT G+DP R + + +I GN VII++H I+
Sbjct: 140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH-VIISSHDID 197
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 45.0 bits (107), Expect = 3e-07
Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
E+S GG+++RV+ A AL++ P L++ DEPT +D + I++ ++++ ++ N + ++
Sbjct: 141 ELS--GGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVV 198
Query: 62 THYIEEARQAHTVIDNYD 79
TH +E A++ V++ D
Sbjct: 199 THDLELAKKLDRVLEMKD 216
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 45.2 bits (107), Expect = 3e-07
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL+ +P++LILDE T +D Q + L + +TV++ H +
Sbjct: 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLS 210
Query: 67 EARQAHTVI 75
+A ++
Sbjct: 211 TVERADQIL 219
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 45.2 bits (107), Expect = 3e-07
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P++L+LDEP +D +R+ + + L ++ + + T + TH E
Sbjct: 133 GGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192
Query: 67 EA 68
EA
Sbjct: 193 EA 194
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 45.1 bits (107), Expect = 4e-07
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +RV A+A+ P+LLI DEPT +D ++ I L+++ + N +++ TH +
Sbjct: 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA 215
Query: 67 -EARQAHTVIDNY 78
A AH +I Y
Sbjct: 216 LVAEAAHKIIVMY 228
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 44.6 bits (106), Expect = 4e-07
Identities = 22/62 (35%), Positives = 41/62 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A L+ + +L+LDEP +DP LRQ + + Q+ ++ T+++ +H +E
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191
Query: 67 EA 68
+A
Sbjct: 192 DA 193
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 44.6 bits (105), Expect = 5e-07
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A + PE++++DEP +DP+ I + + ++ +D T++I TH ++
Sbjct: 149 GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKED--YTIVIVTHNMQ 206
Query: 67 EA 68
+A
Sbjct: 207 QA 208
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 44.6 bits (105), Expect = 6e-07
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTHYI 65
GG Q+R++ A A+ +P++L+LDEP +D +R ++ + + ++ T++ TH
Sbjct: 140 GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199
Query: 66 EEA 68
++A
Sbjct: 200 DDA 202
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 44.3 bits (104), Expect = 6e-07
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+ + A L +PE+L+LDEPT +DP + I + + TVII TH +
Sbjct: 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLA 223
Query: 67 EA 68
+A
Sbjct: 224 QA 225
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 44.3 bits (105), Expect = 6e-07
Identities = 21/57 (36%), Positives = 40/57 (70%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV A AL++ P+LL+LDEPT GVD + ++++ + Q+ ++ + V++ +H
Sbjct: 123 GGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 44.3 bits (104), Expect = 8e-07
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A L +PE++++DEP +DP+ I L+Q K N T+ I TH ++
Sbjct: 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI-EELMQELKQ-NYTIAIVTHNMQ 207
Query: 67 EARQA 71
+A +A
Sbjct: 208 QAARA 212
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 43.8 bits (104), Expect = 1e-06
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ A A++ +P +L+LDE T +D + I L ++K +T I+ H +
Sbjct: 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRL- 196
Query: 67 EARQAHTVID 76
T+++
Sbjct: 197 -----STIVN 201
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 43.7 bits (103), Expect = 1e-06
Identities = 19/59 (32%), Positives = 38/59 (64%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
G+ ++V A+AL + P LLI DEPT ++P + I+ L ++ ++ N T+++ +H ++
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ 220
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 43.8 bits (104), Expect = 1e-06
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A + PE+L+LDEP +DP+ I L+ K + TV+I TH ++
Sbjct: 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI-EELITELKQ-DYTVVIVTHNMQ 216
Query: 67 EA 68
+A
Sbjct: 217 QA 218
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 43.5 bits (103), Expect = 1e-06
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q++V A L P+LLI+DEPT GVD R I+ + I N V+ + +E
Sbjct: 406 GGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLE 464
Query: 67 EARQ 70
E Q
Sbjct: 465 EIEQ 468
Score = 34.6 bits (80), Expect = 0.002
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74
LM D +LILDEPT + P + +++ + ++ G V I +H + E RQ A +
Sbjct: 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFI-SHKLPEIRQLADRI 210
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 43.5 bits (102), Expect = 1e-06
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A A+ P++L++DEP +DP+ + + +++ + T+I+ TH ++
Sbjct: 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQ 221
Query: 67 EA 68
+A
Sbjct: 222 QA 223
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 43.6 bits (103), Expect = 1e-06
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
+IS GGQQ+RV+ A AL+ P++L+ DEP +D LR+S+ + ++ + N T +
Sbjct: 136 QIS--GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYV 193
Query: 62 THYIEEA 68
TH EA
Sbjct: 194 THDQSEA 200
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 43.5 bits (102), Expect = 1e-06
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNK-TVIITTH 63
GGQQ+R+ A AL P++L++DEP G+DP+ + L+Q + ++ T++I +H
Sbjct: 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV-ESLIQSLRLRSELTMVIVSH 209
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 43.5 bits (103), Expect = 1e-06
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A A+ +PE+L+LDEPT +DP+ I L+ K T++I TH ++
Sbjct: 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI-EELITELKS-KYTIVIVTHNMQ 228
Query: 67 EA 68
+A
Sbjct: 229 QA 230
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 43.5 bits (103), Expect = 1e-06
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++R+S A AL+ + E+LILD+ VD I ++L Q + +TVII+ H
Sbjct: 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAH 508
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 43.5 bits (102), Expect = 1e-06
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
ME+S GGQQ+R+ A + PE++++DEP +DP+ I + ++ + T+II
Sbjct: 147 MELS--GGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIII 202
Query: 61 TTHYIEEA 68
TH +++A
Sbjct: 203 VTHNMQQA 210
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 43.2 bits (102), Expect = 2e-06
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
S GGQQ+R+ A + +PE++++DEP +DP+ I + ++ K N T++I TH
Sbjct: 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTH 211
Query: 64 YIEEA 68
+++A
Sbjct: 212 NMQQA 216
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 43.2 bits (102), Expect = 2e-06
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+S GGQQ+R+ A A+ PE++++DEP +DP+ I + ++ + T+II T
Sbjct: 150 LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ--YTIIIVT 207
Query: 63 HYIEEA 68
H +++A
Sbjct: 208 HNMQQA 213
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 43.1 bits (102), Expect = 2e-06
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R A+ L D +++LDEPT +D + Q L++ KTV+ H +
Sbjct: 141 GGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-INHQVELMRLMRELNTQGKTVVTVLHDLN 199
Query: 67 EA 68
+A
Sbjct: 200 QA 201
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 43.2 bits (101), Expect = 2e-06
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A + PE++ILDE T +DP RQ I + +I + TV+ TH ++
Sbjct: 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202
Query: 67 EARQAHTVI 75
EA + ++
Sbjct: 203 EAASSDRIL 211
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 42.8 bits (101), Expect = 2e-06
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P++L+LDEP +D +R+ + L Q+ ++ T + TH E
Sbjct: 139 GGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198
Query: 67 EA 68
EA
Sbjct: 199 EA 200
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 42.8 bits (101), Expect = 2e-06
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV A+AL+ PELLI DEPT +D ++ I L ++ ++ N ++ TH +
Sbjct: 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS 218
Query: 67 EARQ-AHTV 74
R+ A V
Sbjct: 219 IVRKLADRV 227
Score = 41.6 bits (98), Expect = 6e-06
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GGQ++R++ A AL+ P L+ILDEPT +D
Sbjct: 428 GGQRQRIAIARALILKPSLIILDEPTSSLD 457
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 42.9 bits (101), Expect = 2e-06
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
G+ ++V A+AL + P LLI DEPT ++P + I+ L ++ ++ N T+++ +H
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 42.6 bits (101), Expect = 3e-06
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
GGQ++R++ A AL DP L++LDEP +D ++ ++ G V+I
Sbjct: 475 GGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIA 529
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 42.4 bits (100), Expect = 3e-06
Identities = 21/62 (33%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A A+ +P++L++DEP +DP+ +I + + ++ +D T++I TH ++
Sbjct: 151 GGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQD--YTIVIVTHNMQ 208
Query: 67 EA 68
+A
Sbjct: 209 QA 210
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 42.5 bits (101), Expect = 3e-06
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P++L+ DE T +DP +SI L I ++ T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202
Query: 67 EARQ 70
++
Sbjct: 203 VVKR 206
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 42.3 bits (99), Expect = 3e-06
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ + V+ A L +PE LI DE T +DP ++ + ++ + G KT++ TH +E
Sbjct: 139 GGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG-KTIVYITHNLE 197
Query: 67 EARQAHTVI 75
E A +I
Sbjct: 198 ELHDADRII 206
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 42.6 bits (100), Expect = 3e-06
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG---NKTVI 59
++ GGQ++RVS A A+ + ++ + D+P VD + + I+ H+ I +G NKT I
Sbjct: 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV--IGPEGVLKNKTRI 816
Query: 60 ITTHYIEEARQAHTVI 75
+ TH I Q +I
Sbjct: 817 LVTHGISYLPQVDVII 832
Score = 29.5 bits (66), Expect = 0.12
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVD 36
GQ++ V A AL+ ++L+LDE T VD
Sbjct: 1425 GQRQLVCLARALLRKTKILVLDEATAAVD 1453
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 42.2 bits (99), Expect = 4e-06
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++R++ L P++L+LDE T +D +++I + + ++ N V+ TH +
Sbjct: 136 GGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
Query: 67 EA-RQAHTVI 75
+A R A VI
Sbjct: 196 QAIRHADKVI 205
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 41.8 bits (99), Expect = 4e-06
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 9 QQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK---DGNKTVIITTH 63
Q++R++ V L P +L LDEPT G+D Q+ +N +V+ K D + ++ T H
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDS---QAAYN-IVRFLKKLADSGQAILCTIH 166
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 41.8 bits (99), Expect = 4e-06
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITTH 63
GQ+RRV+ A L+ + + ILDEPT +D L + I HL VI TH
Sbjct: 131 GQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL-----AQGGIVIAATH 185
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 42.0 bits (99), Expect = 5e-06
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ AL+ P LL++DEP +D + I +L ++ + ++ +H ++
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193
Query: 67 E-ARQAHTVI 75
E R A V+
Sbjct: 194 EVLRLADRVV 203
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 42.0 bits (98), Expect = 5e-06
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R++ A AL P++L++DEPT +D + Q+I + ++ + ++I +H +
Sbjct: 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQ 213
Query: 67 EA 68
+
Sbjct: 214 QV 215
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 41.6 bits (98), Expect = 5e-06
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+Q+RV+ A A P++L DEPT +D I + L + ++ T+++ TH
Sbjct: 149 GGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 41.7 bits (98), Expect = 5e-06
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GQQRRV+ A L+ L ILDEPT +D + G V++TTH
Sbjct: 129 GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG-MVVLTTH 183
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 41.4 bits (97), Expect = 6e-06
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ+ RV+ AL+ P+ L+LDEP +D LR + + + TH ++
Sbjct: 137 GGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196
Query: 67 EARQAHTVID 76
+ VI+
Sbjct: 197 DVPAGSRVIE 206
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 41.5 bits (98), Expect = 7e-06
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GG Q++ A L+ +P++LILDEPT G+D + I+ + Q+ + G ++I
Sbjct: 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVI 461
Score = 33.4 bits (77), Expect = 0.005
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPT 32
GQQ+ V A AL LLILDEPT
Sbjct: 146 LGQQQLVEIAKALNKQARLLILDEPT 171
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 41.4 bits (97), Expect = 7e-06
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV A A+ ++++LDEP GVD I + L ++ +G KT++++TH
Sbjct: 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEG-KTMLVSTH 200
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 41.3 bits (97), Expect = 7e-06
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q++ A L+ +P +LILDEPT GVD + I+ + Q+ ++G +++++ E
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAE 465
Score = 31.3 bits (71), Expect = 0.026
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPT 32
GGQQ+ V A AL LLILDEP+
Sbjct: 144 GGQQQLVEIAKALNKQARLLILDEPS 169
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 41.3 bits (97), Expect = 8e-06
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A A+ PE++++DEP +DP+ + + ++ N T++I TH ++
Sbjct: 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR--QNYTIVIVTHSMQ 223
Query: 67 EA 68
+A
Sbjct: 224 QA 225
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 41.2 bits (97), Expect = 1e-05
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+ GGQ++R++ A AL+ D +LILDE T +D ++I L ++ K N+T ++
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIA 536
Query: 63 H---YIEEARQAHTVIDN 77
H IE+A + V+++
Sbjct: 537 HRLSTIEKADEI-LVVED 553
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 40.4 bits (95), Expect = 1e-05
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITTH 63
GQQRR++ A + L ILDEPT +D LL + HL + V++TTH
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR-----GGIVLLTTH 185
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 40.6 bits (95), Expect = 1e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q+R+ A L+ P L+ +DEPT G+D ++ + + L + +D VII TH +
Sbjct: 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG 210
Query: 67 EAR 69
AR
Sbjct: 211 VAR 213
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 40.6 bits (96), Expect = 1e-05
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 8 GQQRRVSFAVALMHDPELLILDEP-----TVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
GQQRRV+ A + L ILDEP GV L L Q + G VI+TT
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA-----LLAQHAEQGG-MVILTT 186
Query: 63 H 63
H
Sbjct: 187 H 187
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 40.8 bits (95), Expect = 1e-05
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R+ A AL P++L++DEP +DP+ + + + + T+ I TH ++
Sbjct: 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE--LTIAIVTHNMQ 210
Query: 67 EA 68
+A
Sbjct: 211 QA 212
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 40.5 bits (95), Expect = 1e-05
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
S GG Q++V L+ PE+L+LDEPT G+D + I+ + ++ K +II++
Sbjct: 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISS 449
Score = 25.8 bits (57), Expect = 2.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 9 QQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT---KDGNKTVIITTHYI 65
Q + + A A ++ +++I+DEPT L + NHL I K+ ++ +H +
Sbjct: 139 QMQMIEIAKAFSYNAKIVIMDEPTSS----LTEKEVNHLFTIIRKLKERGCGIVYISHKM 194
Query: 66 EE 67
EE
Sbjct: 195 EE 196
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 40.8 bits (96), Expect = 1e-05
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQIT 51
GG+Q+R++FA L+H P+ + LDE T +D L Q + L T
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDAT 566
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 40.4 bits (95), Expect = 2e-05
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GQQRR+ A ++ PE+L+LDEP G++P + + + ++ + N TV++ H
Sbjct: 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 40.5 bits (95), Expect = 2e-05
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI 43
GG+Q+RV+ A + D +L+LDEPT +D RQ +
Sbjct: 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 39.8 bits (94), Expect = 2e-05
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDP 37
GG+Q+R++FA L+H P+ + LDE T +D
Sbjct: 94 GGEQQRLAFARLLLHKPKFVFLDEATSALDE 124
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 39.8 bits (94), Expect = 2e-05
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD---GNKTVIITTH 63
GGQ++R++ A AL+ +P++L+LDE T +D +S LVQ D +T I+ H
Sbjct: 142 GGQKQRIAIARALLRNPKILLLDEATSALD---AES--EKLVQEALDRAMKGRTTIVIAH 196
Query: 64 YIEEARQAHTVI 75
+ R A +
Sbjct: 197 RLSTIRNADLIA 208
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 40.2 bits (94), Expect = 2e-05
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH---Y 64
GQ++R++ +AL+ + ++L+LDE DP R+ + L+ + K+ KT+ +H Y
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511
Query: 65 IEEARQ 70
A +
Sbjct: 512 FIHADR 517
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 40.1 bits (94), Expect = 2e-05
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPL 38
GG RR + A A+ +P+L++ DEP VG DP+
Sbjct: 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPI 177
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 40.1 bits (94), Expect = 2e-05
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 2 EISSRG-GQQRRVSFAVALM----------HDPELLILDEPTVGVDPLLRQSIWNHLVQI 50
+ R G + F++ + +L++DEP + P L++ + L ++
Sbjct: 243 PLEQRSLGFNNLIYFSLFINFIRNRSSSKNLKNIILLIDEPEAHLHPTLQKELIRFLKKL 302
Query: 51 TKDGNKTVIITTH 63
K NK +IITTH
Sbjct: 303 AKKNNKQIIITTH 315
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 39.9 bits (94), Expect = 3e-05
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI-W--NHLVQITKDGNKTVIITTH 63
GG++RRV+ L+ P++L+LDEPT +D +S+ W HL + TV+ TH
Sbjct: 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLDA---ESVAWLEQHLQEYP----GTVVAVTH 216
Score = 27.6 bits (62), Expect = 0.58
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPT 32
GG++ RV A L +L+LDEPT
Sbjct: 446 GGERNRVHLAKTLKSGGNVLLLDEPT 471
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 39.7 bits (93), Expect = 3e-05
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 9 QQRRVSFAVALMHDPELLI-LDEPTVGVDPLLRQSIWN--HLVQITKDGNKTVIITTH 63
Q++R++ V L+ P+LL+ LDEPT G+D Q+ W+ L++ D + ++ T H
Sbjct: 906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDS---QTAWSICKLMRKLADHGQAILCTIH 960
Score = 27.0 bits (60), Expect = 1.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GG+++RVS A A + ++ D T G+D
Sbjct: 212 GGERKRVSIAEASLGGAKIQCWDNATRGLD 241
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 39.8 bits (93), Expect = 3e-05
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+Q+RV+ A A P++L DEPT +D I + L + ++ T+I+ TH
Sbjct: 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 39.2 bits (92), Expect = 3e-05
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQ-ITKDGNKTVIITTH 63
GQQRRV+ A + L ILDEP +D + + + G V++TTH
Sbjct: 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG--IVLLTTH 188
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 39.8 bits (93), Expect = 3e-05
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 9 QQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
Q++R++ AV L+ +P ++ +DEPT G+D +I V+ T D +TV+ T H
Sbjct: 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIH 1077
Score = 25.6 bits (56), Expect = 2.8
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
GGQ++RV+ ++ + L +DE + G+D I L QI TV+++
Sbjct: 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS 393
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 39.6 bits (93), Expect = 3e-05
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GGQ++R++ A ALM DP++++ DEP +D
Sbjct: 157 GGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 39.4 bits (92), Expect = 3e-05
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ A AL+++P L++ DEPT +D SI+ L ++ + ++ TH ++
Sbjct: 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207
Query: 67 EARQAH 72
A++
Sbjct: 208 LAKRMS 213
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 39.1 bits (91), Expect = 4e-05
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I GG+Q+RV A A+++ P +L+ DEPT +D L + I + + G TV++ T
Sbjct: 136 IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG-VTVLMAT 194
Query: 63 H 63
H
Sbjct: 195 H 195
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 38.9 bits (90), Expect = 4e-05
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDP-----LLRQSIWNHLVQITKDGNKTV 58
S G + R++ A+A P++LILDE T +D LL L+ + + N TV
Sbjct: 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTV 119
Query: 59 IITTHYIEEARQAHTVI 75
I+TT+ ++ A
Sbjct: 120 ILTTNDEKDLGPALLRR 136
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 39.2 bits (91), Expect = 4e-05
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH---Y 64
GQQ+R++ A + D +L+ DE DP ++ + L+ K KT+II +H Y
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY 533
Query: 65 IEEARQ 70
E A Q
Sbjct: 534 FELADQ 539
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 39.2 bits (92), Expect = 4e-05
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 12/41 (29%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL 47
GG R+ + AL+ +P++L+LDEPT NHL
Sbjct: 159 GGWLRKAALGRALVSNPDVLLLDEPT------------NHL 187
Score = 27.2 bits (61), Expect = 0.88
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPT 32
GG++ R+ A + LLILDEPT
Sbjct: 443 GGERNRLLLARLFLKPSNLLILDEPT 468
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 38.7 bits (91), Expect = 5e-05
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD----PLLRQSIWNHLVQITKDGNKTVIITT 62
GG+++R L+ +P+L ILDEP G+D L+ + I N L ++ K+V+I T
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI-NKL----REEGKSVLIIT 161
Query: 63 HY 64
HY
Sbjct: 162 HY 163
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 39.0 bits (91), Expect = 6e-05
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 7 GGQQRRVSFAVAL--------MHDPELLILDEPTVGVDPLLRQSIWNHLVQI---TKDGN 55
GG++ S A+ L ELL LDEP +D + L +I
Sbjct: 818 GGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEK----LAEILEELLSDG 873
Query: 56 KTVIITTH 63
+ +II +H
Sbjct: 874 RQIIIISH 881
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 38.7 bits (90), Expect = 7e-05
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I+ GGQ+ R+S A A+ D +L +LD P +D + I+ V NKT I+ T
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV-CKLMANKTRILVT 216
Query: 63 HYIEEARQAHTVI 75
+E ++A ++
Sbjct: 217 SKMEHLKKADKIL 229
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 38.3 bits (90), Expect = 8e-05
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
SS G + R++FA+A +P++L++DE D ++ L ++ K G KTVI+ +H
Sbjct: 144 SS--GMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG-KTVILVSH 200
Query: 64 YIEEARQ 70
++
Sbjct: 201 DPSSIKR 207
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 38.6 bits (90), Expect = 8e-05
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q+R+ A L+ P L+ +DEPT G+D ++ + + L + ++ V+I TH +
Sbjct: 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213
Query: 67 EAR 69
AR
Sbjct: 214 VAR 216
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 37.8 bits (88), Expect = 1e-04
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q++V + L PE++I DEPT G+D + I+ + Q+ DG K +++ + +
Sbjct: 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG-KVILMVSSELP 470
Query: 67 E 67
E
Sbjct: 471 E 471
Score = 29.0 bits (65), Expect = 0.21
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 9 QQRRVSFAVALMHDPELLILDEPTVG-----VDPLLRQSIWNHLVQITKDGNKTVIITTH 63
++ + A LM D +++I+DEPT VD L I N Q+ K+G ++ +H
Sbjct: 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LIMN---QLRKEG-TAIVYISH 203
Query: 64 YIEEARQ 70
+ E R+
Sbjct: 204 KLAEIRR 210
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 37.8 bits (88), Expect = 1e-04
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++R++ A A++ D +L+LDE T +D Q + L + K +T +I H
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKG--RTTLIIAH 533
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 37.7 bits (88), Expect = 1e-04
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ A ++ +P +LILDE T +D Q+I L +++ +T ++ H +
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLS 459
Query: 67 EARQAHTVI 75
A +I
Sbjct: 460 TIIDADEII 468
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 37.6 bits (88), Expect = 2e-04
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
GG+++R L+ +P+L ILDEP G+D + I + ++ + V+I THY
Sbjct: 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLD-IDALKIVAEGINALREEGRGVLIITHY 203
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 37.6 bits (88), Expect = 2e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI 43
GGQ++R+ A AL+ +P +LILDE T +DP + I
Sbjct: 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 37.5 bits (87), Expect = 2e-04
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG ++RV A+AL P +LI DEPT +D ++ I + + K+ + VI TH
Sbjct: 171 GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITH 227
Score = 34.1 bits (78), Expect = 0.003
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++R+ A AL +P+++I DE +D +R I N L+ + +D + +H
Sbjct: 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 37.4 bits (88), Expect = 2e-04
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 20/65 (30%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL----V----QITKDGNKTV 58
GG++RRV+ L+ P++L+LDEPT NHL V Q D TV
Sbjct: 166 GGERRRVALCRLLLEKPDMLLLDEPT------------NHLDAESVAWLEQFLHDYPGTV 213
Query: 59 IITTH 63
+ TH
Sbjct: 214 VAVTH 218
Score = 26.2 bits (59), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPT 32
GG++ R+ A L +L+LDEPT
Sbjct: 448 GGERNRLHLAKTLKQGGNVLLLDEPT 473
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 37.4 bits (87), Expect = 2e-04
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+++R++ A H P+ ILDE T V + ++ ++ T+ +H
Sbjct: 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC----REFGITLFSVSH 637
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 36.6 bits (85), Expect = 3e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 7 GGQQRRV--SFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
GG++ + +AL L ILDE G+DP Q++ +++ G VI+ T
Sbjct: 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGA-QVIVIT 138
Query: 63 HYIEEARQAHTVID 76
H E A A +I
Sbjct: 139 HLPELAELADKLIH 152
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 36.9 bits (86), Expect = 3e-04
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R A+ L D + ++LDEP +D I L ++ + KT+++ H I
Sbjct: 138 GGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197
Query: 67 EA 68
A
Sbjct: 198 FA 199
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 36.8 bits (85), Expect = 3e-04
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I+ GGQ+ R+S A A+ D +L +LD P +D + + I+ + NKT I+ T
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL-CKLMSNKTRILVT 605
Query: 63 HYIEEARQAHTVI 75
+E ++A ++
Sbjct: 606 SKLEHLKKADKIL 618
Score = 33.7 bits (77), Expect = 0.004
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
G ++ + A +++ ++L+LDEP+ +DP+ Q I L Q N TVI++ H +E
Sbjct: 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVE 1413
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 36.7 bits (85), Expect = 4e-04
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ +R++ A AL P+L++LDE +D +L+ I L ++ + + TH
Sbjct: 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH 209
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 36.5 bits (84), Expect = 4e-04
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQ-----ITKDGNKT 57
I+ GGQ++R+ A AL + ++ LD+P +D L +HL+Q +D +T
Sbjct: 139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLS----DHLMQEGILKFLQDDKRT 194
Query: 58 VIITTHYIEEARQAHTVI 75
+++ TH ++ A +I
Sbjct: 195 LVLVTHKLQYLPHADWII 212
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 36.8 bits (85), Expect = 4e-04
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIW--NHLVQITKDGNKTVIITTH 63
GG + R++ A AL +P+LL+LDEPT +D L +W +L++ KT I+ +H
Sbjct: 347 GGWRMRIALARALFIEPDLLLLDEPTNHLD--LHAVLWLETYLLKWP----KTFIVVSH 399
Score = 33.3 bits (76), Expect = 0.005
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GGQ+ RV+FA P +L+LDEP+ +D
Sbjct: 630 GGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 36.3 bits (85), Expect = 4e-04
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 17/76 (22%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITTH 63
GQ++ + A AL+ ++L+LDE T VDP L++++I + TV+ H
Sbjct: 143 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK------DCTVLTIAH 196
Query: 64 YIEEARQAHTVIDNYD 79
+ T+ID D
Sbjct: 197 RL------DTIID-SD 205
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 36.2 bits (84), Expect = 4e-04
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG +RV A+AL+ +P LI DEPT +D + + + L ++ + +++ TH
Sbjct: 128 GGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 36.3 bits (85), Expect = 4e-04
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 7 GGQQRRVSFAVALM------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GG+Q+RV A L P L+LDEPT +D + + Q+ + VI+
Sbjct: 137 GGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIV 196
Query: 61 TTH 63
H
Sbjct: 197 VLH 199
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 36.2 bits (84), Expect = 5e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI 43
GG+Q+RV+ A + D +L+LDEPT +D R +
Sbjct: 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 36.0 bits (83), Expect = 5e-04
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
I GG+ +RV+ A AL+ + + DEP+ +D R + + +++++G KT ++
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 63 H 63
H
Sbjct: 130 H 130
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 36.4 bits (84), Expect = 5e-04
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++R++ A A++ + +L+LDE T +D + N + + K N+T I H +
Sbjct: 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRK--NRTTFIIAHRLS 531
Query: 67 EARQAHTVI 75
R A V+
Sbjct: 532 TVRNADLVL 540
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 35.8 bits (83), Expect = 6e-04
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 7 GGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GG+Q+RV A L L LDEPT +D + Q+ ++G + +
Sbjct: 138 GGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAV 197
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 35.8 bits (83), Expect = 7e-04
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 7 GGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
GG+ +RV A L +P L ILDEP+ G+ + + + GN TVI+ H
Sbjct: 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN-TVILIEHN 148
Query: 65 IEEARQAHTVID 76
++ A +ID
Sbjct: 149 LDVLSSADWIID 160
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 35.9 bits (83), Expect = 7e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GG+++RV A AL +P+LL+LDEPT +D
Sbjct: 140 GGERQRVHVARALAQEPKLLLLDEPTNHLD 169
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 35.8 bits (83), Expect = 7e-04
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ L+ +P + +LDEP +D LR + + ++ K +T+I TH
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 67 EA 68
EA
Sbjct: 196 EA 197
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 35.8 bits (83), Expect = 7e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD---PLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++R++ A AL+ D +LILDE T +D L Q+ L+Q +T ++ H
Sbjct: 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-----GRTTLVIAH 526
Query: 64 ---YIEEARQ 70
IE+A +
Sbjct: 527 RLSTIEKADR 536
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 35.6 bits (83), Expect = 8e-04
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKDGNKTVIITTH 63
RV A AL +P++L+LDEPT +D +I W L + + N T+II +H
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLDI---NTIRW--LEDVLNERNSTMIIISH 210
Score = 32.9 bits (76), Expect = 0.007
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPT 32
GG++ R+ F +M P +L++DEPT
Sbjct: 441 GGEKGRMLFGKLMMQKPNVLVMDEPT 466
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 35.6 bits (83), Expect = 9e-04
Identities = 19/65 (29%), Positives = 40/65 (61%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
S GG+++RV+ AL+ PELL++DEP +D ++ + +L ++ ++ N ++ +
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVS 186
Query: 63 HYIEE 67
H ++E
Sbjct: 187 HSLDE 191
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 35.3 bits (82), Expect = 0.001
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GG+++R++ A AL+ DP +LILDE T +D
Sbjct: 474 GGERQRLAIARALLKDPPILILDEATSALD 503
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 35.3 bits (82), Expect = 0.001
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG Q+R+ A L+ P L+ +DEPT G+D ++ + + L + ++ V+I TH +
Sbjct: 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213
Query: 67 EAR 69
AR
Sbjct: 214 VAR 216
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 35.0 bits (81), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI 43
GGQ +RV A AL +P+LLILDE +D +L+ +
Sbjct: 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV 190
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 35.3 bits (82), Expect = 0.001
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH---Y 64
GQ++R++ +AL + ++L+LDE DP R+ + L+ + ++ KT+ +H Y
Sbjct: 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512
Query: 65 IEEA 68
A
Sbjct: 513 FIHA 516
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 34.8 bits (80), Expect = 0.001
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV A AL +L+LDEPT +D + Q LV+ D KT + H ++
Sbjct: 142 GGERQRVLLARALAQATPVLLLDEPTASLD-INHQVRTLELVRRLVDDGKTAVAAIHDLD 200
Query: 67 EA 68
A
Sbjct: 201 LA 202
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 34.7 bits (80), Expect = 0.002
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ +R+ A AL+ +P+L+I DEP +D ++ + N L Q+ ++ ++I H
Sbjct: 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH 220
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 34.4 bits (79), Expect = 0.002
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
GG+++R + +PEL ILDE G+D + I V +DG ++ II THY
Sbjct: 148 GGEKKRNDILQMAVLEPELCILDESDSGLD-IDALKIVADGVNSLRDGKRSFIIVTHY 204
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 34.2 bits (78), Expect = 0.003
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 2 EISSRG-----GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNK 56
EI RG GQ++RVS A A+ + ++ I D+P +D + +++ ++ G
Sbjct: 733 EIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKT 792
Query: 57 TVIIT 61
V++T
Sbjct: 793 RVLVT 797
Score = 29.6 bits (66), Expect = 0.12
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVD 36
GQ++ +S A AL+ ++L+LDE T VD
Sbjct: 1375 GQRQLLSLARALLRRSKILVLDEATASVD 1403
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 33.7 bits (78), Expect = 0.003
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK----DGNKTVIITTH 63
R++ A + +L LDEPT +D ++I L +I + N +I+ TH
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEERKSQKNFQLIVITH 181
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 33.4 bits (77), Expect = 0.004
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
GG+++RVS A AL+ +L D T G+D I + + T ++
Sbjct: 121 GGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 33.6 bits (77), Expect = 0.005
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 2 EISSR--GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV 48
E + R GG++ R+ A+ + P LL+LDEPT +D +RQ++ L+
Sbjct: 426 EETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI 474
Score = 32.4 bits (74), Expect = 0.011
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG + R++ A AL+ +LL+LDEPT +D L IW L + K T+I+ +H
Sbjct: 152 GGWRMRLNLAQALICRSDLLLLDEPTNHLD--LDAVIW--LEKWLKSYQGTLILISH 204
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 33.1 bits (76), Expect = 0.005
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG +R+ A+AL+ + +I DEPT +D + + I + L I + +++ TH +
Sbjct: 143 GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG 202
Query: 67 -EARQAHTV 74
AR A V
Sbjct: 203 VVARLADDV 211
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 33.1 bits (76), Expect = 0.006
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVG 34
GQ++ + + L DP+LL+LDEP G
Sbjct: 151 GQKQWLEIGMLLAQDPKLLLLDEPVAG 177
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 33.1 bits (76), Expect = 0.006
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++R+S L P++L+LDE T +D + ++ + + ++ N V+ TH +
Sbjct: 140 GGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199
Query: 67 EARQAHTVI 75
E A VI
Sbjct: 200 EINHADKVI 208
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 32.9 bits (76), Expect = 0.007
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 25 LLILDEPTVG-----VDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76
L ILDEPT G + LL L ++ GN TVI+ H ++ + A +ID
Sbjct: 846 LYILDEPTTGLHFDDIKKLLEV-----LHRLVDKGN-TVIVIEHNLDVIKTADWIID 896
Score = 26.0 bits (58), Expect = 2.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 25 LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76
L +LDEP++G+ + + L ++ GN TVI+ H + R A +ID
Sbjct: 504 LYVLDEPSIGLHQRDNERLIETLKRLRDLGN-TVIVVEHDEDTIRAADHIID 554
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 32.9 bits (75), Expect = 0.008
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN 45
GQ++RV+ A AL+ P+++I DE +D +R + N
Sbjct: 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN 190
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 32.5 bits (74), Expect = 0.010
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
+S+ G + +S ++ + L++ DE G DP ++ +++ N V+ITT
Sbjct: 383 LSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITT 442
Query: 63 HYIE 66
HY E
Sbjct: 443 HYKE 446
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 32.1 bits (74), Expect = 0.013
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPT 32
GG+ +RV+ A L D +L +LDEP+
Sbjct: 456 GGELQRVAIAACLSRDADLYLLDEPS 481
Score = 28.2 bits (64), Expect = 0.36
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPT 32
GG+ +RV+ A AL+ D + DEPT
Sbjct: 215 GGELQRVAIAAALLRDADFYFFDEPT 240
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 32.4 bits (74), Expect = 0.013
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
GQ++ ++ A L+ P++LILDE T +D Q+I L + + + T+++ H +
Sbjct: 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLST 537
Query: 68 ARQAHTVI 75
+A T++
Sbjct: 538 IVEADTIL 545
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 32.1 bits (74), Expect = 0.013
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVG 34
GQ++ + + LM DP+LL+LDEP G
Sbjct: 147 GQKQWLEIGMLLMQDPKLLLLDEPVAG 173
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 32.0 bits (73), Expect = 0.014
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 2 EISSRG-----GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD--G 54
EI RG GQ++RVS A A+ + ++ I D+P +D + + +++ + KD
Sbjct: 733 EIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI---KDELR 789
Query: 55 NKTVIITT 62
KT ++ T
Sbjct: 790 GKTRVLVT 797
Score = 30.5 bits (69), Expect = 0.053
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPT----VGVDPLLRQSI 43
GQ++ +S A AL+ ++L+LDE T V D L++++I
Sbjct: 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1417
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 31.8 bits (73), Expect = 0.016
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 25 LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76
L +LDEP++G+ P + L ++ GN TV++ H + R A VID
Sbjct: 160 LYVLDEPSIGLHPRDNDRLIETLKRLRDLGN-TVLVVEHDEDTIRAADHVID 210
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 31.9 bits (73), Expect = 0.016
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
GG+++R + D EL ILDE G+D + I + ++I+ THY
Sbjct: 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKII-AEGINKLMTSENSIILITHY 210
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 31.8 bits (73), Expect = 0.020
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDP--------LLRQSIWNHLVQITKDG 54
SS G R++F+VA +P++L+LDE D L + +
Sbjct: 148 YSS--GMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK--------- 196
Query: 55 NKTVIITTHYIEEARQ 70
NKT+++ +H + +Q
Sbjct: 197 NKTIVLVSHDLGAIKQ 212
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 31.5 bits (71), Expect = 0.020
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GQ+R+V+ M +L +LDEP V +D L +I + + G V++T+H
Sbjct: 131 GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG-AVLLTSH 185
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 31.7 bits (72), Expect = 0.021
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
G ++ + A +++ ++L+LDEP+ +DP+ Q I L Q D TVI++ H IE
Sbjct: 142 GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC--TVILSEHRIE 198
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 31.5 bits (72), Expect = 0.021
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ A AL+ D ++ DEP+ +D R + + ++ +DG K VI+ H
Sbjct: 216 GGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDG-KYVIVVEH 271
Score = 31.5 bits (72), Expect = 0.023
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65
GG+ +RV+ A AL + +L +LDEP+ +D R + + + ++ KT ++ H I
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 31.7 bits (72), Expect = 0.023
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT-KDGNKTVIITTH 63
GQ++R+ A AL+ P+++I DE +D +R + N ++++ K G + +T H
Sbjct: 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 31.3 bits (71), Expect = 0.024
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 7 GGQQRRVSFAVAL---------MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKT 57
GG+ RV FA L P L+LDEPT +D + + + + ++ +D N
Sbjct: 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLG 207
Query: 58 VIITTHYIE-EARQAHTV 74
V+ H AR A +
Sbjct: 208 VLAIVHDPNLAARHADRI 225
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 31.5 bits (72), Expect = 0.024
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 7 GGQQRRVSFAVALMHD---PELLILDEPTVG-----VDPLLRQSIWNHLVQITKDGNKTV 58
GG+ +R+ A L L ILDEPT G + LL ++Q D TV
Sbjct: 832 GGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL------EVLQRLVDKGNTV 885
Query: 59 IITTHYIEEARQAHTVID 76
++ H ++ + A +ID
Sbjct: 886 VVIEHNLDVIKTADYIID 903
Score = 29.2 bits (66), Expect = 0.14
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 25 LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76
L +LDEP++G+ + + N L ++ GN T+I+ H + R A VID
Sbjct: 511 LYVLDEPSIGLHQRDNRRLINTLKRLRDLGN-TLIVVEHDEDTIRAADYVID 561
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 31.5 bits (72), Expect = 0.025
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVG--VDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
GG+++R + +P+L ILDE G +D L I + ++ +++ +I THY
Sbjct: 147 GGEKKRNEILQMALLEPKLAILDEIDSGLDIDAL---KIVAEGINRLREPDRSFLIITHY 203
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 30.9 bits (70), Expect = 0.034
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 8 GQQRRVSFAVALMHDPELLILDEP-TVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
G + ++ F++ + +P++L++DE +VG D Q + + + K+ NKT+ +H +
Sbjct: 147 GMRAKLGFSINITVNPDILVIDEALSVG-DQTFAQKCLDKIYEF-KEQNKTIFFVSHNLG 204
Query: 67 EARQAHTVI 75
+ RQ T I
Sbjct: 205 QVRQFCTKI 213
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 31.0 bits (70), Expect = 0.040
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
GQ+ R A L P +L++DE +D L + + ++ ++ T+I+ TH E
Sbjct: 511 GQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570
Query: 68 ARQ 70
Sbjct: 571 GNA 573
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 30.7 bits (70), Expect = 0.040
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GGQ++R+ A AL+ P +L+ DE T +D
Sbjct: 591 GGQRQRLLIARALVRKPRILLFDEATSALD 620
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 30.6 bits (69), Expect = 0.053
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 7 GGQQRRVSFAVALMH-------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI 59
GG+ +RV A ++ +LL+LDEP +D + ++ L + + G ++
Sbjct: 128 GGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQG-LAIV 186
Query: 60 ITTHYIEEA-RQAHTV 74
+++H + R AH
Sbjct: 187 MSSHDLNHTLRHAHRA 202
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 30.3 bits (69), Expect = 0.055
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 7 GGQQRRVSFAVALMH---DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +R+ A L L ILDEPT G+ + + L ++ GN TV++ H
Sbjct: 172 GGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGN-TVVVIEH 230
Query: 64 YIEEARQAHTVID 76
++ + A +ID
Sbjct: 231 NLDVIKCADWIID 243
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 30.3 bits (69), Expect = 0.062
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GG Q++ L D ++++LDEPT G+D + I+N + ++ G + +
Sbjct: 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFV 452
Score = 26.8 bits (60), Expect = 1.2
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVG-----VDPLLRQSIWNHLVQITKDGNKTVIITT 62
GQ++ V A AL + ++ DEPT ++ L R +++ + + ++ +
Sbjct: 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR------VIRELRAEGRVILYVS 197
Query: 63 HYIEE 67
H +EE
Sbjct: 198 HRMEE 202
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 30.3 bits (68), Expect = 0.074
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 4 SSRGGQQRRVSFAVA------LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD--GN 55
S GG++ V+FA+ L +D LLI+DEPT +D R ++ + + KD
Sbjct: 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDI 860
Query: 56 KTVIITTHYIE 66
VI+ +H+ E
Sbjct: 861 PQVIMISHHRE 871
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 29.6 bits (66), Expect = 0.10
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GGQ++R A+ L + +++LDEPT +D
Sbjct: 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 29.7 bits (67), Expect = 0.10
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 13/74 (17%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQ--ITKDGNKTVIITTHYI 65
GQ++ + A AL+ P +L+LDE T +D + L+Q I ++ + I+T
Sbjct: 129 GQRQLLCLARALLKRPRVLVLDEATASID-----YATDALIQKTIREEFTNSTILTI--- 180
Query: 66 EEARQAHTVIDNYD 79
A + T+ID YD
Sbjct: 181 --AHRLRTIID-YD 191
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 29.4 bits (66), Expect = 0.12
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 4 SSRGGQQRRVSFAVALMH---DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
S GG+ +R+ A L+ P L +LDEPT G+ +++ L +T G+ TV+I
Sbjct: 809 SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH-TVVI 867
Query: 61 TTHYIEEARQAHTVID 76
H + + A V++
Sbjct: 868 IEHNMHVVKVADYVLE 883
Score = 28.3 bits (63), Expect = 0.36
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 7 GGQQRRVSFAVALMHDPELL----ILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
GG+Q R + A L EL+ ILDEP++G+ P + N +++ +D TV++
Sbjct: 479 GGEQERTALAKHL--GAELIGITYILDEPSIGLHPQDTHKLIN-VIKKLRDQGNTVLLVE 535
Query: 63 HYIEEARQAHTVID 76
H + A +ID
Sbjct: 536 HDEQMISLADRIID 549
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 29.4 bits (66), Expect = 0.13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDP-----LLRQSIWNHLVQITKDGNKTVIIT 61
GGQ+ RVS A A+ + ++ +LD+P +D ++ + L KT ++
Sbjct: 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL------AGKTRVLA 838
Query: 62 THYI 65
TH +
Sbjct: 839 THQV 842
Score = 25.1 bits (55), Expect = 5.0
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 8 GQQRRVSFAVALMHDPELLIL-DEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GQ++ + A AL+ IL DE T +DP L + I + ++ TVI H +
Sbjct: 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV--MSAFSAYTVITIAHRL- 1505
Query: 67 EARQAHTVIDNYD 79
HTV YD
Sbjct: 1506 -----HTVA-QYD 1512
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 29.3 bits (67), Expect = 0.14
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 25 LLILDEPTVG-----VDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76
L ILDEPT G + LL + + LV GN TV++ H ++ + A +ID
Sbjct: 854 LYILDEPTTGLHFEDIRKLL--EVLHRLV---DKGN-TVVVIEHNLDVIKTADWIID 904
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 28.8 bits (65), Expect = 0.22
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 22 DPELLILDEPTVGVDPL----LRQSIWNHLVQITKDGNKTVIITTHYIE 66
L++LDE G DP+ L +I L + VI TTHY E
Sbjct: 108 PDSLVLLDELGSGTDPVEGAALAIAILEEL----LERGALVIATTHYGE 152
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 28.6 bits (64), Expect = 0.25
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
S GG+++R A+ + D L+LDEPT +D + + + +++++ TVI H
Sbjct: 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206
Query: 64 YIEEA 68
I A
Sbjct: 207 DINMA 211
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 28.5 bits (64), Expect = 0.28
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GG+ +RV+ A L D ++ +LDEP+ +D
Sbjct: 118 GGELQRVAIAACLSKDADIYLLDEPSAYLD 147
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.5 bits (64), Expect = 0.32
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 24 ELLILDEPTVGVDPLLRQS----IWNHLVQITKDGNKTVIITTHYIEEARQA 71
LLILDEPT +D R+ + +L +I + VII +H EE + A
Sbjct: 814 PLLILDEPTPFLDEERRRKLVDIMERYLRKIPQ-----VIIVSHD-EELKDA 859
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 27.9 bits (62), Expect = 0.40
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITTH 63
GQ++R++ A + L +LDEP +D L+ + I HL G ++TTH
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL-----RGGGAALVTTH 195
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 28.0 bits (62), Expect = 0.46
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
GQ++ A A + +LI+DE T +D + ++I +V +T ++TV+ H +
Sbjct: 160 GQRQLFCLARAFVRKSSILIMDEATASID-MATENILQKVV-MTAFADRTVVTIAHRVST 217
Query: 68 ARQAHTVI 75
A V+
Sbjct: 218 ILDADLVL 225
>gnl|CDD|226668 COG4213, XylF, ABC-type xylose transport system, periplasmic
component [Carbohydrate transport and metabolism].
Length = 341
Score = 27.3 bits (61), Expect = 0.63
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 13 VSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA 68
AVAL+ + T S + +TKD K V+I + + ++
Sbjct: 281 AEIAVALVKGKKPEPKATTTYNNGVKDVPSYLLTPIAVTKDNLKAVVIDSGFYKKE 336
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 27.5 bits (61), Expect = 0.68
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 8 GQQRRVSFAVALM--HDPELLILDEPTVGVDP-LLRQSIWNHLVQITKDGNKT--VIITT 62
G R ++ A L+ P LL+LDEP + P LL L ++ + K VI++T
Sbjct: 274 GTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLP-----ALAELMRSAAKRSQVIVST 328
Query: 63 HYIEEAR--QAHTVI 75
H + H+V
Sbjct: 329 HSPRLLNAVEEHSVF 343
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 27.1 bits (61), Expect = 0.81
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLR 40
GGQ++RV+ A++ +P + + DEP +D LR
Sbjct: 137 GGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR 170
>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like
homolog. The MutS protein initiates DNA mismatch repair
by recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 199
Score = 26.9 bits (60), Expect = 0.89
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 23 PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR 69
P L +LDE G + RQ+ +++ K+ N II+TH +E A
Sbjct: 106 PVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELAD 152
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 26.8 bits (60), Expect = 0.89
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 7 GGQQRRVSFA-VALMHDPE------LLILDEPTVGVD 36
GG+ +RV A V L P+ LL+LDEP +D
Sbjct: 129 GGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD 165
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 26.0 bits (58), Expect = 0.91
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 14/44 (31%)
Query: 7 GGQQRRVSFAVAL-------------MHDPELLILDEPTVGVDP 37
GG+ ++V +AL P L+ LDE +D
Sbjct: 25 GGE-KQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDE 67
>gnl|CDD|221747 pfam12740, Chlorophyllase2, Chlorophyllase enzyme. This family
consists of several chlorophyllase and chlorophyllase-2
(EC:3.1.1.14) enzymes. Chlorophyllase (Chlase) is the
first enzyme involved in chlorophyll (Chl) degradation
and catalyzes the hydrolysis of an ester bond to yield
chlorophyllide and phytol. The family includes both
plant and Amphioxus members.
Length = 258
Score = 27.0 bits (60), Expect = 0.92
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDP 37
SRGG+ V+FA+AL + L + +GVDP
Sbjct: 99 SRGGK---VAFALALGNANVLHLKFSALIGVDP 128
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 26.6 bits (59), Expect = 1.2
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 25 LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
+ ILDEP + P + + L + G + +II TH
Sbjct: 149 IYILDEPEAALSPSRQLELLAILRDLADSGAQ-IIIATH 186
>gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain,
repeat 1. TBC1D8, TBC1D8B, TBC1D9 and TBC1D9B may act
as a GTPase-activating proteins for Rab family
protein(s). They all contain an N-terminal PH-GRAM
domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p,
and Cdc16p) domain. This cd contains the first repeat
of the PH-GRAM domain. The GRAM domain is found in
glucosyltransferases, myotubularins and other putative
membrane-associated proteins. The GRAM domain is part
of a larger motif with a pleckstrin homology (PH)
domain fold.
Length = 100
Score = 26.2 bits (58), Expect = 1.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 44 WNHLVQITKDGNKTVIITTH 63
W L I K GN T+ +T
Sbjct: 47 WTELTDIEKSGNTTIKTSTI 66
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 26.5 bits (59), Expect = 1.3
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 24 ELLILDEPTVGVDPL----LRQSIWNHLVQITKDGNKTVIITTHYIE 66
L++ DE G DP L +I L++ ++ TTHY E
Sbjct: 397 SLVLFDELGSGTDPDEGAALAIAILEDLLEK----PAKIVATTHYRE 439
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 26.2 bits (58), Expect = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPT 32
GG+ +RV+ A AL D + DEP+
Sbjct: 142 GGELQRVAIAAALARDADFYFFDEPS 167
>gnl|CDD|185755 cd09216, GH64-LPHase-like, glycoside hydrolase family 64:
laminaripentaose-producing, beta-1,3-glucanase
(LPHase)-like. This subfamily is represented by the
laminaripentaose-producing, beta-1,3-glucanase (LPHase)
of Streptomyces matensis and related bacterial and
ascomycete proteins. LPHase is a member of glycoside
hydrolase family 64 (GH64), it is an inverting enzyme
involved in the cleavage of long-chain polysaccharide
beta-1,3-glucans, into specific pentasaccharide
oligomers. LPHase is a two-domain crescent fold
structure: one domain is composed of 10 beta-strands,
eight coming from the N-terminus of the protein and two
from the C-terminal region, and the protein has a second
inserted domain; this cd includes both domains. This
protein has an electronegative, substrate-binding cleft,
and conserved Glu and Asp residues involved in the
cleavage of the beta-1,3-glucan, laminarin, a plant and
fungal cell wall component. Among bacteria, many
beta-1,3-glucanases are implicated in fungal cell wall
degradation. Also included in this family is GluB , the
beta-1,3-glucanase B from Lysobacter enzymogenes Strain
N4-7. Recombinant GluB demonstrated higher relative
activity toward the branched-chain beta-1,3 glucan
substrate zymosan A than toward linear beta-1,3 glucan
substrates. Sometimes these two domains are found
associated with other domains such as in the
Catenulispora acidiphila DSM 44928 carbohydrate binding
family 6 protein in which they are positioned N-terminal
of a carbohydrate binding module, family 6 (CBM_6)
domain. In the Cellulosimicrobium cellulans, glucan
endo-1,3-beta-glucosidase, they are positioned
N-terminal of a RICIN, carbohydrate-binding domain.
Length = 353
Score = 26.3 bits (58), Expect = 1.5
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 36 DPLLRQSIWNHLVQITKDGNKTVIITTHY-IEEARQAHTVIDNY 78
D L Q W LVQ DG +I + ++ T +D Y
Sbjct: 164 DALSGQPAWAGLVQRRPDGTVLRVIAPGHGLDAGAFPATYLDGY 207
>gnl|CDD|225972 COG3439, COG3439, Uncharacterized conserved protein [Function
unknown].
Length = 137
Score = 25.8 bits (57), Expect = 1.9
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 24 ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76
L+ P G+ R ++ +D + V ++ IE + +
Sbjct: 72 TPLLSKNPEFGLLLPCRVLVY-------EDEDGKVRVSYIPIEALIEGSKDLL 117
>gnl|CDD|204651 pfam11452, DUF3000, Protein of unknown function (DUF3000). This is
a bacterial family of uncharacterized proteins.
Length = 177
Score = 25.7 bits (57), Expect = 2.5
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV 48
G R V++ A + EP + VDPLL + W+ L
Sbjct: 69 DGTFRLVAYIQADL---------EPEMAVDPLLPEVAWSWLT 101
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 25.6 bits (56), Expect = 3.0
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 8 GQQRRVSFAVALMHDPELLILDE 30
G + R+ FA+++ +P++L++DE
Sbjct: 147 GMKSRLGFAISVHINPDILVIDE 169
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 25.6 bits (57), Expect = 3.5
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 22 DPELLIL-DEPTVGVDPL----LRQSIWNHLVQITKDGNKTVIITTHYIE 66
D L+L DE G DP L SI +L + G K I TTHY E
Sbjct: 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKR---GAKI-IATTHYKE 451
>gnl|CDD|147512 pfam05363, Herpes_US12, Herpesvirus US12 family. US12 a key
factor in the evasion of cellular immune response
against HSV-infected cells. Specific inhibition of the
transporter associated with antigen processing (TAP) by
US12 prevents peptide transport into the endoplasmic
reticulum and subsequent loading of major
histocompatibility complex (MHC) class I molecules.
US12 is comprised of three helices and is associated
with cellular membranes.
Length = 86
Score = 24.7 bits (53), Expect = 3.8
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDP 37
EI R + R A +HDPEL +L P + D
Sbjct: 28 EIHKREREDREA--ARTAVHDPELPLLCPPDLLPDI 61
>gnl|CDD|222041 pfam13312, DUF4081, Domain of unknown function (DUF4081). This
domain is often found N-terminal to the GNAT
acetyltransferase domain, pfam00583 and FR47,
pfam08445.
Length = 107
Score = 24.5 bits (54), Expect = 4.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 21 HDPELLILDEPTVGVDPLLRQS 42
P L I P V DPL+R+
Sbjct: 77 DQPLLAISTPPAVAPDPLVRRV 98
>gnl|CDD|193531 cd05654, M20_ArgE_RocB, M20 Peptidase Arginine utilization
protein, RocB. Peptidase M20 family, ArgE RocB
(Arginine utilization protein, RocB; arginine
degradation protein, RocB) subfamily. This group of
proteins is possibly related to acetylornithine
deacetylase (ArgE) and may be involved in the arginine
and/or ornithine degradation pathway. In Bacillus
subtilis, RocB is one of the three genes found in the
rocABC operon, which is sigma L dependent and induced
by arginine. The function of members of this family is
as yet unknown, although they are predicted as
deacetylases.
Length = 535
Score = 24.8 bits (55), Expect = 4.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 10/44 (22%)
Query: 36 DPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV-IDNY 78
DPL R++++ LV+ KTVI+ H+ TV I++Y
Sbjct: 54 DPLGRKNVFA-LVK-GPTSKKTVILIGHF-------DTVDIEDY 88
>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell
envelope biogenesis, outer membrane].
Length = 475
Score = 24.6 bits (54), Expect = 6.5
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 1 MEISSRGGQQRRV---SFAVA----LMHD 22
ME+SS G Q RV +F V L D
Sbjct: 165 MEVSSHGLVQGRVEGVTFDVGVFTNLSRD 193
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 24.8 bits (54), Expect = 6.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 16 AVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD 53
A H P L++LDE GVD R ++ L + D
Sbjct: 1271 QEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLD 1308
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 24.6 bits (54), Expect = 7.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 26 LILDEPTVGVD 36
LILDEPTV +D
Sbjct: 815 LILDEPTVFLD 825
>gnl|CDD|240173 cd05152, MPH2', Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the
transfer of the gamma-phosphoryl group from ATP to the
2'-hydroxyl of macrolide antibiotics such as
erythromycin, clarithromycin, and azithromycin, among
others. Macrolides penetrate the bacterial cell and bind
to ribosomes, where it interrupts protein elongation,
leading ultimately to the demise of the bacterium.
Phosphorylation of macrolides leads to their
inactivation. Based on substrate specificity and amino
acid sequence, MPH2' is divided into types I and II,
encoded by mphA and mphB genes, respectively. MPH2'I
inactivates 14-membered ring macrolides while MPH2'II
inactivates both 14- and 16-membered ring macrolides.
Enzymatic inactivation of macrolides has been reported
as a mechanism for bacterial resistance in clinical
samples.
Length = 276
Score = 24.2 bits (53), Expect = 9.9
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 10 QRRVSFAVA--LMHDPEL----LILDEPTVGVDPLLRQSIWNH 46
++ + V +H PEL + P +DP + + +WN
Sbjct: 63 RKHLPVQVPDWRVHTPELIAYPKLPGVPAATIDPEIGEYVWNF 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,130,389
Number of extensions: 328781
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 408
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)