RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5634
(79 letters)
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 99.9 bits (250), Expect = 2e-28
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
G RRV A L+ + E+ +LD+P V +D + + +++I K+ +I + +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195
Query: 67 EA 68
Sbjct: 196 YC 197
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 96.8 bits (242), Expect = 9e-27
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
G R++ A ALM +P L ILDEPT G+D L + + L Q +++G T+++++H +
Sbjct: 149 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG-LTILVSSHNML 207
Query: 67 EARQ 70
E
Sbjct: 208 EVEF 211
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 90.7 bits (226), Expect = 3e-24
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNK-TVIITTHYI 65
G+++RV A ALM P++LILDEP G+D + R+S+ + L ++ +I TH+I
Sbjct: 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI 223
Query: 66 EEARQ 70
EE
Sbjct: 224 EEITA 228
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 73.4 bits (181), Expect = 1e-17
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GQ++RV+ A L+ +P++LILDEPT G+DP+ I LV++ K+ T+II TH I+
Sbjct: 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205
Query: 67 E-ARQAHTVI 75
V
Sbjct: 206 IVPLYCDNVF 215
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 72.8 bits (179), Expect = 1e-17
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GQ V ++AL PE++ LDEP VD R I + K+ K I+ TH ++
Sbjct: 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI----SRYIKEYGKEGILVTHELD 186
Query: 67 EA 68
Sbjct: 187 ML 188
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 72.2 bits (178), Expect = 2e-17
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG++RRV+ A ++H+P++LILDEP VG+D + + + + K KTVI+ +H IE
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDIE 199
Query: 67 E-ARQAHTVI 75
V+
Sbjct: 200 TVINHVDRVV 209
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 66.2 bits (162), Expect = 8e-15
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+ +++ A L + +L +LD+P+ +D R + + ++T++ I H +
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447
Query: 67 EARQ-AHTVI 75
A +I
Sbjct: 448 IHDYIADRII 457
Score = 56.2 bits (136), Expect = 2e-11
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG +R+ A +L+ + ++ I D+P+ +D R ++ + ++ K NK VI+ H
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDH 195
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 64.5 bits (158), Expect = 1e-14
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
+S GGQ++ + A A+ + +L++LDEPT +D + + + L+ + + N TV+ T
Sbjct: 128 SLS--GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185
Query: 62 THYIEEA-RQAHTVI 75
TH + A+ +
Sbjct: 186 THQPNQVVAIANKTL 200
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 62.0 bits (151), Expect = 3e-13
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+ +RV+ +AL ++ ++DEP+ +D R + + KT I H
Sbjct: 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529
Query: 67 EARQ-AHTVI 75
A A VI
Sbjct: 530 MATYLADKVI 539
Score = 53.1 bits (128), Expect = 3e-10
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +R + ++ + + ++ + DEP+ +D R + + + K VI H
Sbjct: 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT-KYVICVEH 279
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 58.3 bits (142), Expect = 3e-12
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL ++P +++ D+PT +D + I L ++ ++ KTV++ TH I
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 67 EARQAHTVI 75
AR +I
Sbjct: 208 VARFGERII 216
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 58.1 bits (141), Expect = 6e-12
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ A L+ D ++ +LDEP+ +D R ++ + + + KT ++ H
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 50.8 bits (122), Expect = 2e-09
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ A AL+ DEP+ +D R + +++ + K V++ H
Sbjct: 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEH 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 56.4 bits (137), Expect = 2e-11
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ + V ALM +P+++++DEP GV P L I+NH++++ K T +I H
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-KAKGITFLIIEH 211
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 54.4 bits (132), Expect = 7e-11
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+RV+ A AL ++P LL DEPT +D + + + ++I + G ++++ TH E
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG-TSIVMVTHERE 201
Query: 67 EARQAHTVI 75
A H +
Sbjct: 202 LAELTHRTL 210
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 54.6 bits (132), Expect = 1e-10
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+ +RV+ A L+ D ++ +LDEP+ +D R ++ + + + KT ++ H +
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 463
Query: 67 EARQ-AHTVI 75
+ ++
Sbjct: 464 MIDYVSDRLM 473
Score = 50.0 bits (120), Expect = 5e-09
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+ +RV+ A AL+ + DEP+ +D R + + +++++G K+V++ H
Sbjct: 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG-KSVLVVEH 216
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 53.7 bits (130), Expect = 1e-10
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+++RV+ A AL+ P LL+LDEP VD + + L + ++ + ++ TH +
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 67 EA 68
EA
Sbjct: 189 EA 190
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 53.1 bits (127), Expect = 3e-10
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG + +++ A A++ + ++L+LDEPT +D W LV T I +H
Sbjct: 551 GGWKMKLALARAVLRNADILLLDEPTNHLD--TVNVAW--LVNYLNTCGITSITISH 603
Score = 52.3 bits (125), Expect = 8e-10
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKDGNKTVIITTH 63
GGQ+ ++ A P L++LDEPT +D R S+ L + K+ VII TH
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGA--LSKALKEFEGGVIIITH 956
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 51.4 bits (124), Expect = 1e-09
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+R + A AL DPEL++LDEP +D LR+ I ++ + K+ + +H E
Sbjct: 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200
Query: 67 EA 68
EA
Sbjct: 201 EA 202
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 51.2 bits (123), Expect = 2e-09
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV+ A AL +P++L+ D+ T +DP +SI L I + T+++ TH
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 50.2 bits (121), Expect = 3e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+RV+ A AL+ +P++L+LDEP +DP +++ L + K TV+ TH
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
Query: 67 EA 68
EA
Sbjct: 190 EA 191
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 50.0 bits (119), Expect = 5e-09
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 7 GGQQRRVSFAV------ALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GG++ + A L + LLILDEPT +D R+ + + + K VI+
Sbjct: 251 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVIL 309
Query: 61 TTHYIEEARQAHTVID 76
+H E A VI
Sbjct: 310 VSHDEELKDAADHVIR 325
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 47.6 bits (114), Expect = 3e-08
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL P++L+ DEP +D +R+ + + Q+ + T + TH E
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207
Query: 67 EA 68
EA
Sbjct: 208 EA 209
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 46.7 bits (112), Expect = 5e-08
Identities = 17/48 (35%), Positives = 34/48 (70%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG 54
GG+Q+ ++ ALM P+LL++DEP++G+ P+L ++ + +I ++G
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 46.8 bits (112), Expect = 5e-08
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RVS A AL +P++L+ DEPT +DP L + + Q+ ++G KT+++ TH +
Sbjct: 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEMG 214
Query: 67 EARQ-AHTVI 75
AR + VI
Sbjct: 215 FARHVSSHVI 224
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 44.7 bits (106), Expect = 1e-07
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 7 GGQQRRVSFA------VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GG++ + A + L + LLILDEPT +D R+ + + + K VI+
Sbjct: 60 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVIL 118
Query: 61 TTHYIEEARQAHTVID 76
+H E A VI
Sbjct: 119 VSHDEELKDAADHVIR 134
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 45.7 bits (109), Expect = 1e-07
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ +RV+ A AL +P++++ DEPT +DP + + + + Q+ +G T+++ TH +
Sbjct: 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG-MTMVVVTHEMG 220
Query: 67 EARQ-AHTVI 75
AR+ V+
Sbjct: 221 FAREVGDRVL 230
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 44.6 bits (106), Expect = 4e-07
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ +P++L+LDE T +D + L + + +T I+ H +
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLS 586
Query: 67 EARQAHTVI 75
R A +
Sbjct: 587 TVRNADVIA 595
Score = 38.1 bits (89), Expect = 7e-05
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD---GNKTVIITTH 63
GGQ++R++ A AL+ P +L+LDE T +D +S +VQ D +T I+ H
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDT---ES--EKVVQEALDKAREGRTCIVIAH 1228
Query: 64 YIEEARQAHT--VIDN 77
+ + A VI N
Sbjct: 1229 RLSTIQNADLIVVIQN 1244
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 42.2 bits (100), Expect = 2e-06
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GGQ++R+S A +++P +LILDE T +D
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALD 509
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 40.9 bits (97), Expect = 6e-06
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++R++ A AL+++P++LI DE T +D I ++ +I K +TVII H
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAH 202
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 39.8 bits (94), Expect = 1e-05
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQ-----ITKDGNKTVIIT 61
GGQ++ V+ A AL+ P LLILD T +D + VQ + ++TV++
Sbjct: 159 GGQRQAVALARALIRKPRLLILDNATSALDA---GN--QLRVQRLLYESPEWASRTVLLI 213
Query: 62 THYIEEARQAHT--VIDN 77
T + A +AH +
Sbjct: 214 TQQLSLAERAHHILFLKE 231
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 39.9 bits (94), Expect = 2e-05
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+++RV+ A ++ P +++LDE T +D ++I L ++ N+T I+ H
Sbjct: 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAH 247
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 39.9 bits (94), Expect = 2e-05
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GGQ++R++ A AL+ D +LILDE T +D
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALD 512
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 39.6 bits (93), Expect = 2e-05
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
G QQ+RV+ A AL+ DP LL+LDEP +D +R S + ++ T+++ +H
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202
Query: 67 EA 68
+
Sbjct: 203 DI 204
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 39.5 bits (93), Expect = 2e-05
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 7 GGQQRRVSFAVAL-------MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI 59
GG+ +RV A + +LL+LDEP +D + ++ L +++ G ++
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG-LAIV 187
Query: 60 ITTHYIEEA-RQAHTVI 75
+++H + R AH
Sbjct: 188 MSSHDLNHTLRHAHRAW 204
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 39.5 bits (93), Expect = 2e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GGQ++RV+ A AL+ D +LILDE T +D
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALD 512
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 39.7 bits (93), Expect = 2e-05
Identities = 13/74 (17%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITT 62
G ++ + A +++ ++L+LDEP+ +DP ++R+++ + TVI+
Sbjct: 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF------ADCTVILCE 211
Query: 63 HYIEEARQAHTVID 76
+ +++
Sbjct: 212 A------RIEAMLE 219
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 39.5 bits (93), Expect = 2e-05
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GG+++R++ A L+ DP+++I DE T +D + + K N+T+II H
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAH 212
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 39.1 bits (92), Expect = 3e-05
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG---NKTVIITTH 63
GGQ++RVS A A+ + ++ + D+P VD + + I+ ++ I G NKT I+ TH
Sbjct: 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV--IGPKGMLKNKTRILVTH 187
Query: 64 YIEEARQAHTVI 75
+ Q +I
Sbjct: 188 SMSYLPQVDVII 199
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 38.7 bits (91), Expect = 4e-05
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG---NKTVIITTH 63
GGQ+ R+S A A+ D +L +LD P +D L + I+ V NKT I+ T
Sbjct: 133 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC----KLMANKTRILVTS 188
Query: 64 YIEEARQAHTVI 75
+E ++A ++
Sbjct: 189 KMEHLKKADKIL 200
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 38.5 bits (90), Expect = 5e-05
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV-QITKDGNKTVIITTHYI 65
GGQ+ R+S A A+ D +L +LD P +D L + I+ V ++ NKT I+ T +
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA--NKTRILVTSKM 219
Query: 66 EEARQAHTVI 75
E ++A ++
Sbjct: 220 EHLKKADKIL 229
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 37.5 bits (88), Expect = 9e-05
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
GGQ++R++ A A + +P++L+LDE T +D
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLD 171
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 36.7 bits (85), Expect = 2e-04
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 7 GGQQRRVSFAVAL-------MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI 59
GG+Q V+ ++ L + E +ILDEPTV +D R + ++ +I
Sbjct: 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQ--MI 340
Query: 60 ITTHYIEEARQAHTVI 75
I TH+ E A +I
Sbjct: 341 IITHHRELEDVADVII 356
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 36.0 bits (84), Expect = 4e-04
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 1 MEISSRG-----GQQRRVSFAVALMHDPELLILDEPTVGVD 36
++ G GQ++ ++ A + +P++LILDE T VD
Sbjct: 483 TVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 36.0 bits (84), Expect = 4e-04
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG---NKTVIITTH 63
GGQ++R++ A AL+ +P++L+LDE T +D ++ +LVQ D +TV++ H
Sbjct: 486 GGQKQRIAIARALLKNPKILLLDEATSALDA---EN--EYLVQEALDRLMDGRTVLVIAH 540
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 35.2 bits (82), Expect = 6e-04
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVII 60
GGQ++R+S A AL+ P++LILD+ T VDP + + + T I
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT------KGCTTFI 533
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 32.2 bits (74), Expect = 0.008
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQQ+RV+ A AL+ +PE+L+LDEP +D LLR + L ++ K+ T + TH
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH 192
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 29.8 bits (68), Expect = 0.054
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 27 ILDEPTVG-----VDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76
+LDEPT G V+ L RQ LV++ GN TVI H ++ + V+D
Sbjct: 756 VLDEPTTGLHPADVERLQRQ-----LVKLVDAGN-TVIAVEHKMQVVAASDWVLD 804
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 29.5 bits (67), Expect = 0.078
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQQ+RV+ A AL+ P++L+ DEP +D LR + + + ++ T + TH
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 29.1 bits (66), Expect = 0.093
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
GGQ++RV+ A A++ +P++L++DEP +D LR ++ + ++ + T I TH
Sbjct: 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 29.1 bits (65), Expect = 0.11
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 7 GGQQRRVSFAVAL------MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
GG++ +S ++A+ + +DE +D ++ I + L ++ + K ++
Sbjct: 282 GGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLN-KVIVF 340
Query: 61 TTHYIEEARQA 71
TH E +A
Sbjct: 341 ITH-DREFSEA 350
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 28.0 bits (63), Expect = 0.23
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEP 31
GGQ++RV+ A++ P++ ++DEP
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEP 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.23
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 14/43 (32%)
Query: 25 LLILDEPTVGV-DPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
LL+L V + WN + + +++TT + +
Sbjct: 247 LLVLLN----VQNA----KAWNAF-----NLSCKILLTTRFKQ 276
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 0.74
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 17/62 (27%)
Query: 13 VSFA--VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70
V+F L+ G SI ++Q G V++TT +
Sbjct: 472 VTFKDKYVLI------------TGAGK---GSIGAEVLQGLLQGGAKVVVTTSRFSKQVT 516
Query: 71 AH 72
+
Sbjct: 517 DY 518
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 25.9 bits (58), Expect = 1.3
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Query: 27 ILDEPTVG-----VDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID 76
ILDEPTVG V L+ + + LV GN TVI+ H ++ + A +ID
Sbjct: 831 ILDEPTVGLHFEDVRKLV--EVLHRLVD---RGN-TVIVIEHNLDVIKNADHIID 879
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 25.9 bits (58), Expect = 1.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 11/42 (26%)
Query: 27 ILDEPTVG-----VDPLLRQSIWNHLVQITKDGNKTVIITTH 63
ILDEPT G + LL + + LV +G+ TV++ H
Sbjct: 871 ILDEPTTGLHVDDIARLL--DVLHRLVD---NGD-TVLVIEH 906
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 25.6 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 11/42 (26%)
Query: 27 ILDEPTVG-----VDPLLRQSIWNHLVQITKDGNKTVIITTH 63
ILDEPT G + LL + + LV +G+ TV++ H
Sbjct: 569 ILDEPTTGLHVDDIARLL--DVLHRLVD---NGD-TVLVIEH 604
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 25.6 bits (57), Expect = 2.1
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 11/42 (26%)
Query: 27 ILDEPTVG-----VDPLLRQSIWNHLVQITKDGNKTVIITTH 63
ILDEPT G + LL ++ N LV GN TVI+ H
Sbjct: 889 ILDEPTTGLHFDDIRKLL--NVINGLVD---KGN-TVIVIEH 924
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 25.2 bits (56), Expect = 2.5
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 19 LMHDPELLILDEPTVG--VDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
L+ +P +LDE G +D L + V + N ++ THY
Sbjct: 158 LVLEPTYAVLDETDSGLDIDAL---KVVARGVNAMRGPNFGALVITHY 202
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 25.2 bits (56), Expect = 2.6
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 19 LMHDPELLILDEPTVG--VDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
+ +PEL ILDE G +D L + V +DG ++ II THY
Sbjct: 179 AVLEPELCILDESDSGLDIDAL---KVVADGVNSLRDGKRSFIIVTHY 223
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 24.9 bits (55), Expect = 2.7
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 36 DPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDN 77
L ++ +G + + + E RQA +
Sbjct: 290 HADYLYETQAGLEKLVAEGMRPPVSARIPLSEGRQALQDFAD 331
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 24.1 bits (53), Expect = 5.1
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 39 LRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDN 77
+ I H V+ + + E ++AH ++
Sbjct: 303 FTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEA 341
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 23.9 bits (52), Expect = 6.3
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 21 HDPELLILDEPT---VGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQA 71
+ + +++D T + + R I L ++ T I + R
Sbjct: 127 INAKRVVVDSVTTLYINKPAMARSII-LQLKRVLAGTGCTSIFVSQVSVGERGF 179
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate
ligase; peptidoglycan biosynthesis; HET: KCX UAG API;
2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 498
Score = 23.7 bits (52), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 1 MEISSRGGQQRRVS---FAVA 18
ME+SS G Q RV+ FA +
Sbjct: 181 MEVSSHGLVQHRVAALKFAAS 201
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
ligase; nucleotide-binding, peptidoglycan synthesis,
MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium
tuberculosis} PDB: 2xja_A*
Length = 535
Score = 23.7 bits (52), Expect = 9.1
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 1 MEISSRGGQQRRVS---FAVA 18
ME+SS RV FAV
Sbjct: 219 MEVSSHALALGRVDGTRFAVG 239
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,246,453
Number of extensions: 61504
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 78
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)