RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5634
(79 letters)
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 81.4 bits (201), Expect = 2e-21
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQQ+RV+ A AL ++P +++ D+PT +D + I L ++ ++ KTV++ TH I
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 67 EARQAHTVI 75
AR +I
Sbjct: 208 VARFGERII 216
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 77.1 bits (190), Expect = 8e-20
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A A++ +P++L++DEP +D LR ++ + ++ + T I TH
Sbjct: 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198
Query: 67 EARQ-AHTVI 75
EA +
Sbjct: 199 EAMTMGDRIA 208
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 73.4 bits (180), Expect = 2e-18
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+ ++ ALM P+LL++DEP++G+ P+L ++ + +I ++G T+++
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG-TTILLVEQNAL 200
Query: 67 EARQ-AHTVI 75
A + AH
Sbjct: 201 GALKVAHYGY 210
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 71.4 bits (175), Expect = 1e-17
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+ D +LILDE T +D ++I L ++ K N+T ++ H +
Sbjct: 155 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS 212
Query: 67 EARQAHTVI 75
QA ++
Sbjct: 213 TIEQADEIV 221
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 71.4 bits (175), Expect = 2e-17
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R+S A +++P +LILDE T +D I L ++K ++T +I H +
Sbjct: 157 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS 214
Query: 67 EARQAHTVI 75
A ++
Sbjct: 215 TITHADKIV 223
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 68.4 bits (167), Expect = 2e-16
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A++ P++ ++DEP +D LR + L ++ + T I TH
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 67 EARQ-AHTVI 75
EA +
Sbjct: 202 EAMTMGDRIA 211
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 68.4 bits (167), Expect = 2e-16
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A A + +P++L+LDE T +D + L + K +T ++ H +
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLS 199
Query: 67 EARQAHTVI 75
A +
Sbjct: 200 TIVDADKIY 208
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 68.5 bits (167), Expect = 2e-16
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ + V ALM +P+++++DEP GV P L I+NH++++ G T +I H ++
Sbjct: 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG-ITFLIIEHRLD 211
Query: 67 EARQ-AHTVI 75
+
Sbjct: 212 IVLNYIDHLY 221
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 67.3 bits (164), Expect = 3e-16
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
G RRV A L+ + E+ +LD+P V +D + + +++I K+ +I + +
Sbjct: 129 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY 188
Query: 68 A 68
Sbjct: 189 C 189
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 67.2 bits (164), Expect = 5e-16
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ A AL +P++L+ DE T +DP +SI L I + T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD 202
Query: 67 EARQ-AHTVI 75
++ V
Sbjct: 203 VVKRICDCVA 212
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 66.8 bits (163), Expect = 8e-16
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
GQQ+RVS A AL +P++L+ DEPT +DP L + + Q+ ++G KT+++ TH +
Sbjct: 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEMGF 211
Query: 68 ARQ-AHTVI 75
AR + VI
Sbjct: 212 ARHVSSHVI 220
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 67.2 bits (164), Expect = 8e-16
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ+ R+S A A+ D +L +LD P +D + ++ V KT I+ T +E
Sbjct: 161 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN-KTRILVTSKME 219
Query: 67 EARQAHTVI 75
R+A ++
Sbjct: 220 HLRKADKIL 228
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 66.2 bits (161), Expect = 1e-15
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
G R++ A ALM +P L ILDEPT G+D L + + L Q +++ T+++++H + E
Sbjct: 137 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLE 195
Query: 68 ARQ 70
Sbjct: 196 VEF 198
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 64.2 bits (156), Expect = 7e-15
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++R++ A AL+++P++LI DE T +D I ++ +I K +TVII H +
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS 199
Query: 67 EARQAHTVI 75
+ A +I
Sbjct: 200 TVKNADRII 208
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 63.0 bits (153), Expect = 2e-14
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++ V+ A AL+ P +LILD+ T +D + + L + + +++V++ T ++
Sbjct: 154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 213
Query: 67 EARQAHTVI 75
QA ++
Sbjct: 214 LVEQADHIL 222
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 62.3 bits (151), Expect = 3e-14
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GGQ++RV+ L+ +P + +LDEP +D LR + + ++ K +T+I TH
Sbjct: 133 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 192
Query: 67 EARQ-AHTVI 75
EA A ++
Sbjct: 193 EAMTLADKIV 202
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 58.4 bits (141), Expect = 8e-13
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 7 GGQQRRVSFAVALMH-------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI 59
GG+ +RV A ++ +LL+LDEP +D + ++ L + + G ++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG-LAIV 186
Query: 60 ITTHYIEEARQ-AHTVI 75
+++H + + AH
Sbjct: 187 MSSHDLNHTLRHAHRAW 203
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 52.8 bits (126), Expect = 1e-10
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
GG+Q+RV+ A AL+ +P++L+LDEP +DP +++ L + K TV+ TH
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
Query: 67 EARQ-AHTVI 75
EAR A +
Sbjct: 190 EARIMADRIA 199
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 52.9 bits (125), Expect = 2e-10
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 6 RGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65
G R++ ++ L + LLILDEPT +D R+ + + + K VI+ +H
Sbjct: 286 ALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVILVSHDE 344
Query: 66 EEARQAHTVID 76
E A VI
Sbjct: 345 ELKDAADHVIR 355
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 51.7 bits (122), Expect = 3e-10
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 6 RGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65
G R++ ++ L + LLILDEPT +D R+ + + + K VI+ +H
Sbjct: 209 ALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVILVSHDE 267
Query: 66 EEARQAHTVID 76
E A VI
Sbjct: 268 ELKDAADHVIR 278
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 50.9 bits (121), Expect = 6e-10
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
QQ+RV+ A AL+ DP LL+LDEP +D +R S + ++ T+++ +H +
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203
Query: 68 ARQ-AHTVI 75
A V
Sbjct: 204 IFAIADRVG 212
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 48.1 bits (114), Expect = 6e-09
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
G+++RV+ A AL+ P LL+LDEP VD + + L + ++ + ++ TH + E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 68 ARQ-AHTVI 75
A A V
Sbjct: 190 AAMLADEVA 198
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 36.5 bits (83), Expect = 7e-05
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
++ A +++I+DE G L + + + QI D N V+ T +
Sbjct: 84 AIPILERAYREAKKDRRKVIIIDEI--GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRD 141
Query: 67 EARQAHTVI 75
+
Sbjct: 142 VHPLVKEIR 150
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 35.1 bits (79), Expect = 3e-04
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 15 FAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74
FA+ +LDE +D Q I ++ + ++ + I+ + ++ +
Sbjct: 347 FAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH-RNPDLQFIVISLKNTMFEKSDAL 405
Query: 75 I 75
+
Sbjct: 406 V 406
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 24.8 bits (54), Expect = 0.96
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 16 AVALMHDPELLILDEPTVGVDP-LLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74
+ D L+ + P LR ++ N + K G T++ + A +
Sbjct: 21 RIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAI 80
Query: 75 IDN 77
DN
Sbjct: 81 DDN 83
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 511
Score = 23.1 bits (49), Expect = 4.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 3 ISSRGGQQRRVSFAVALM 20
S+R + +SF A++
Sbjct: 8 RSTRSSSPKTISFEEAII 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 298,769
Number of extensions: 11059
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 27
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.9 bits)