Query psy5637
Match_columns 335
No_of_seqs 277 out of 2520
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:43:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 99.4 1.6E-12 5.6E-17 129.1 11.5 172 121-299 153-353 (429)
2 3qe7_A Uracil permease; uracil 75.2 1.5 5.3E-05 42.9 3.0 63 273-335 267-331 (429)
3 1bts_A BAND 3 anion transport 13.2 71 0.0024 18.7 1.0 23 210-232 3-25 (26)
4 1wa7_B TIP, hypothetical 28.7 12.1 1.1E+02 0.0036 17.8 1.5 11 161-171 2-12 (26)
5 2a65_A Leutaa, Na(+):neurotran 10.8 1.6E+02 0.0054 29.3 3.4 65 169-233 232-298 (519)
6 1j2m_A CPI-17, 17-kDa PKC-pote 10.4 1.1E+02 0.0039 23.7 1.7 39 4-42 7-46 (99)
7 4b29_A Dimethylsulfoniopropion 7.3 3.7E+02 0.013 23.6 4.0 49 22-71 62-112 (217)
8 1dj7_A Ferredoxin thioredoxin 7.2 2.6E+02 0.009 22.2 2.6 23 195-217 16-38 (117)
9 2k1k_A Ephrin type-A receptor 7.1 2.3E+02 0.0079 17.8 1.8 18 63-80 5-22 (38)
10 2z73_A Rhodopsin; visual pigme 5.4 6.5E+02 0.022 22.9 4.8 49 183-231 42-90 (448)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.37 E-value=1.6e-12 Score=129.11 Aligned_cols=172 Identities=17% Similarity=0.163 Sum_probs=126.0
Q ss_pred CCChhHHHHHHHHHHHHHH------------h---------HHhhhcccccccccceeeccC-CCCCCCCCCCCCchhHH
Q psy5637 121 KSDLSQDIVSGVTIAVVHI------------P---------QASSKFGLKENYHITTVGYIP-TGFPVPEVPPLWLLPKL 178 (335)
Q Consensus 121 ~~n~~~~~ig~~~l~iL~~------------P---------~is~~~~~~~~~~v~ivG~Ip-~glp~~~~P~~~~~~~l 178 (335)
..|+....+++++++++++ | ++++.++.. +.+.+++.| -++|.+..|+|+. ..
T Consensus 153 ~~~~~~~~la~~tl~iii~~~~~~kg~~~~~aiLigivvg~~~a~~~G~~---d~~~v~~a~~~~lP~~~~P~f~~--~~ 227 (429)
T 3qe7_A 153 TPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIV---DTTPIINAHWFALPTLYTPRFEW--FA 227 (429)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHHT---TSSHHHHSCSSCCCCCCCCCCCH--HH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhcCC---CcccccccccccccCCCCCcccH--HH
Confidence 3477889999999888766 1 223333332 233345544 4678888888763 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCc----ccCchhHHHHhhhhhhhhhcccccccccccchhhhhhhcCcccchhhH
Q psy5637 179 IVDGLVIAIIAFSINISMASILAKKMKY----KIDSNQELLASGFSNIFASFFSCVPFAASLSRSLIQLQTGGQTQLASG 254 (335)
Q Consensus 179 ~~~a~~iaiv~~~esls~ak~~a~~~~~----~id~nqEL~a~G~aNi~ss~fgg~p~~gs~sRS~vn~~~G~~T~la~i 254 (335)
+...+.++++.++|++...++.+++.|+ +.|.|||+.++|++|+++++||++|.++...++.++..+|++||.+.+
T Consensus 228 i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~ 307 (429)
T 3qe7_A 228 ILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIG 307 (429)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHHH
Confidence 5566889999999999999888887764 457899999999999999999999999866666788889999999998
Q ss_pred HHHHHHHHHHHh--hCCCCCccchhhhhhhh-hhhcccccchhhHHHH
Q psy5637 255 ISCGCLAIVLLY--VGPFFQPLPHGFSNIFA-SFFSCVPFAASLSRSL 299 (335)
Q Consensus 255 v~a~~vll~ll~--l~~~~~~iP~~~l~ii~-a~~~~~~~~~s~~rt~ 299 (335)
++++++++.-++ ++.+++.+|.++++.+. ..++.+.+ +..|..
T Consensus 308 ~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~--~Gi~~l 353 (429)
T 3qe7_A 308 GAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGA--SGIRVL 353 (429)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 888877655443 56799999999998432 33444443 333444
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=75.16 E-value=1.5 Score=42.94 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=49.2
Q ss_pred ccchhhhhhhhhhhcccccchhhHHHHHHHHhccccchhHHHHHHHHHHHHH--HHhhhccCCCC
Q psy5637 273 PLPHGFSNIFASFFSCVPFAASLSRSLIQLQTGGQTQLASGVSCGCLAIVLL--YVGPFFQPLPH 335 (335)
Q Consensus 273 ~iP~~~l~ii~a~~~~~~~~~s~~rt~v~~~~g~ktq~a~~~~~~~~l~~~l--~~~~~~~~lP~ 335 (335)
.+..|+.|+++++++..+.+...-+......+|.+++.+..++++++++.-+ .+++++..+|.
T Consensus 267 l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~ 331 (429)
T 3qe7_A 267 MFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPL 331 (429)
T ss_dssp HHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 3455788899999999999887666667778999999998888777765543 36689999884
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=13.22 E-value=71 Score=18.68 Aligned_cols=23 Identities=9% Similarity=0.302 Sum_probs=15.7
Q ss_pred chhHHHHhhhhhhhhhccccccc
Q psy5637 210 SNQELLASGFSNIFASFFSCVPF 232 (335)
Q Consensus 210 ~nqEL~a~G~aNi~ss~fgg~p~ 232 (335)
.++-+++.+++-++-++|+|-|-
T Consensus 3 v~E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHHHHHHhcccC
Confidence 34557788888888888888774
No 4
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=12.14 E-value=1.1e+02 Score=17.76 Aligned_cols=11 Identities=45% Similarity=1.189 Sum_probs=8.8
Q ss_pred CCCCCCCCCCC
Q psy5637 161 PTGFPVPEVPP 171 (335)
Q Consensus 161 p~glp~~~~P~ 171 (335)
|.|+|+|.+|.
T Consensus 2 ~PG~P~P~LPp 12 (26)
T 1wa7_B 2 DPGMPTPPLPP 12 (26)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCCCCCCCC
Confidence 56889988885
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=10.78 E-value=1.6e+02 Score=29.31 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=52.5
Q ss_pred CCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHhhhhhhhhhcccccccc
Q psy5637 169 VPPLWLL--PKLIVDGLVIAIIAFSINISMASILAKKMKYKIDSNQELLASGFSNIFASFFSCVPFA 233 (335)
Q Consensus 169 ~P~~~~~--~~l~~~a~~iaiv~~~esls~ak~~a~~~~~~id~nqEL~a~G~aNi~ss~fgg~p~~ 233 (335)
.||++.+ .+.+.+|..=++.++.-....--.++...+++.|--|+-+.....|...+++.|+..-
T Consensus 232 ~Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF 298 (519)
T 2a65_A 232 TPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSIS 298 (519)
T ss_dssp SCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cCCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5677665 4678888888888776666666778888889999999999999999999999887543
No 6
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=10.38 E-value=1.1e+02 Score=23.68 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCCCccCCCCCccccCCccccc-chhhhhhhhcCCCCccC
Q psy5637 4 LGKPVRKPGKPVKKTGKPVKRT-GVVEWCKSQFSDTQCCN 42 (335)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 42 (335)
++..||...=.+||++++.+.. .+.+|+-.++..-..|.
T Consensus 7 ~~~~rR~~~lTvKY~Rk~l~krL~~E~WI~~qL~eLy~~~ 46 (99)
T 1j2m_A 7 GGLQKRHARVTVKYDRRELQRRLDVEKWIDGRLEELYRGR 46 (99)
T ss_dssp CSSCSCSSSSCSCCCSCSSSHHHHHHHHHHHHHHHSCTTS
T ss_pred cchhhcccceeEEeCHHHHHHHHhHHHHHHHHHHHHhcCc
Confidence 4567888888899998886555 77888888887666663
No 7
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=7.33 E-value=3.7e+02 Score=23.58 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=30.7
Q ss_pred ccccchhhhhhhhcCCCCccCh--hhhhhhhccccccccCCCCccccchhhH
Q psy5637 22 VKRTGVVEWCKSQFSDTQCCNP--FSWLVQLFPILDWLPKYKWKSDLSQDIV 71 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~P~~~Wl~~Y~~~~~l~~D~i 71 (335)
+......+++.+-+.....+.. .+.++.+-|.+.|=+.|+ +..+..|+.
T Consensus 62 p~~~P~~~~L~~al~~~~~~~~~L~~al~~~~~~L~Wr~~y~-~~~~~~~f~ 112 (217)
T 4b29_A 62 AHALPVIDHLTRDPGHASDQSQPLRDALVAAAPHVEWRHSYT-EAEVGRDFL 112 (217)
T ss_dssp CBCCTHHHHHHHCCCCCCTTTHHHHHHHHHHGGGSBCBCCSC-HHHHCHHHH
T ss_pred CccCchHHHHHHhhccccccHHHHHHHHHHhCCCCeEeeccC-CCCcChhHH
Confidence 3444455555444433223322 788999999999999999 666555543
No 8
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=7.16 E-value=2.6e+02 Score=22.22 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=18.4
Q ss_pred HHHHHHHhhcCcccCchhHHHHh
Q psy5637 195 SMASILAKKMKYKIDSNQELLAS 217 (335)
Q Consensus 195 s~ak~~a~~~~~~id~nqEL~a~ 217 (335)
--++.++++.||..++|+|....
T Consensus 16 ~f~ek~ae~~G~~~NpD~evt~~ 38 (117)
T 1dj7_A 16 NFAEQYAKRTDTYFCSDLSVTAV 38 (117)
T ss_dssp HHHHHHHHHTTCBCBSSHHHHHH
T ss_pred HHHHHHHHHhCCEECCCHHHHHH
Confidence 34567889999999999998543
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=7.06 E-value=2.3e+02 Score=17.83 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=13.6
Q ss_pred ccccchhhHHhHHHHhhh
Q psy5637 63 KSDLSQDIVSGVTIAVVH 80 (335)
Q Consensus 63 ~~~l~~D~iAGltv~~~~ 80 (335)
.+.+.+..+||+.+|.+.
T Consensus 5 ~~~ls~GaIAGiVvG~v~ 22 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLL 22 (38)
T ss_dssp STTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCceeeeehHHHH
Confidence 355778889999988763
No 10
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=5.36 E-value=6.5e+02 Score=22.86 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHhhhhhhhhhcccccc
Q psy5637 183 LVIAIIAFSINISMASILAKKMKYKIDSNQELLASGFSNIFASFFSCVP 231 (335)
Q Consensus 183 ~~iaiv~~~esls~ak~~a~~~~~~id~nqEL~a~G~aNi~ss~fgg~p 231 (335)
..+++++.+.++.+.-.+.++...+...|.=+..+.+++++.+++.++|
T Consensus 42 ~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p 90 (448)
T 2z73_A 42 GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFP 90 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhcc
Confidence 3456666666766666666665556778899999999999888776555
Done!