Query psy5637
Match_columns 335
No_of_seqs 277 out of 2520
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 22:43:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5637.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5637hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j2na_ a.165.1.1 (A:) Myosin 11.1 32 0.0023 25.0 0.6 38 4-41 7-45 (99)
2 d2pu9a1 g.36.1.1 (A:8-115) Fer 8.0 88 0.0064 22.8 2.1 22 196-217 10-31 (108)
3 d1u5ta1 a.4.5.54 (A:20-164) Va 7.9 91 0.0066 23.9 2.2 20 198-217 25-44 (145)
4 d1y9ia_ a.195.1.1 (A:) Low tem 5.1 1.2E+02 0.0088 23.5 1.6 27 53-79 122-150 (159)
5 d1rh5c_ f.23.29.1 (C:) Sec-bet 5.0 1.9E+02 0.014 15.8 1.9 25 63-87 5-29 (32)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 4.9 2E+02 0.014 25.3 3.2 30 56-85 167-196 (472)
7 d1tv0a_ g.9.1.1 (A:) Defensin- 4.1 1.2E+02 0.009 16.6 0.6 10 3-12 12-21 (32)
8 d2a65a1 f.54.1.1 (A:5-513) Na( 3.2 3.7E+02 0.027 23.6 3.6 62 168-229 227-290 (509)
9 d1adta3 g.51.1.1 (A:386-529) S 3.1 1.7E+02 0.012 22.2 0.7 17 50-66 113-129 (144)
10 d1jhfa2 b.87.1.1 (A:73-198) Le 3.0 2.4E+02 0.017 20.0 1.6 17 152-168 2-18 (126)
No 1
>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein, CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=11.15 E-value=32 Score=24.96 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=27.8
Q ss_pred CCCCccCCCCCccccCCccccc-chhhhhhhhcCCCCcc
Q psy5637 4 LGKPVRKPGKPVKKTGKPVKRT-GVVEWCKSQFSDTQCC 41 (335)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 41 (335)
.+-+||...=.+||++++.+.. .+.+|+-.++.+-..|
T Consensus 7 ~~~~rR~~~~TvKYdRk~L~krL~~E~WI~~qL~~Ly~~ 45 (99)
T d1j2na_ 7 GGLQKRHARVDVKYDRRELQRRLDVEKWIDGRLEELYRG 45 (99)
T ss_dssp CSSCCCSSCCSCCSCCCSSHHHHHHHHHHHHHHHHHCSS
T ss_pred CcccccccceeeeeCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777777899998886666 7888887777654444
No 2
>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}
Probab=8.02 E-value=88 Score=22.78 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=18.2
Q ss_pred HHHHHHhhcCcccCchhHHHHh
Q psy5637 196 MASILAKKMKYKIDSNQELLAS 217 (335)
Q Consensus 196 ~ak~~a~~~~~~id~nqEL~a~ 217 (335)
-+..+|+++||..++|+|..+.
T Consensus 10 f~e~ya~~~G~~~npD~~v~~~ 31 (108)
T d2pu9a1 10 FAEQYAKRTDTYFCSDLSVTAV 31 (108)
T ss_dssp HHHHHHHHHTCBCBSSHHHHHH
T ss_pred HHHHHHHHcCceeCCCHHHHHH
Confidence 4667888999999999997653
No 3
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.85 E-value=91 Score=23.87 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHhhcCcccCchhHHHHh
Q psy5637 198 SILAKKMKYKIDSNQELLAS 217 (335)
Q Consensus 198 k~~a~~~~~~id~nqEL~a~ 217 (335)
..||++|+.++..|.|++++
T Consensus 25 ~~FA~kH~~eI~~np~FR~~ 44 (145)
T d1u5ta1 25 VEFAKKHNSELQASPEFRSK 44 (145)
T ss_dssp HHHHHHCTTTTTTCHHHHHH
T ss_pred HHHHHHhHHHhhcCHHHHHH
Confidence 46899999999999998875
No 4
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=5.14 E-value=1.2e+02 Score=23.47 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=18.8
Q ss_pred ccccc-cCCCC-ccccchhhHHhHHHHhh
Q psy5637 53 ILDWL-PKYKW-KSDLSQDIVSGVTIAVV 79 (335)
Q Consensus 53 ~~~Wl-~~Y~~-~~~l~~D~iAGltv~~~ 79 (335)
+++|+ ++.+- -.-+..|++||+..++.
T Consensus 122 ~i~~ld~~~~g~~gv~lDDivagi~Aa~~ 150 (159)
T d1y9ia_ 122 ILAKLNEHDGIAVHTFLDDIVGAIAAAAA 150 (159)
T ss_dssp HHHHTTCCCSSCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCccchHHHHHHHHHHHHH
Confidence 35688 44431 25799999999987764
No 5
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.03 E-value=1.9e+02 Score=15.77 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=18.4
Q ss_pred ccccchhhHHhHHHHhhhcccchhh
Q psy5637 63 KSDLSQDIVSGVTIAVVHIPQGVVE 87 (335)
Q Consensus 63 ~~~l~~D~iAGltv~~~~iPq~mAy 87 (335)
|-....+-+-|+||+.+.|-.-+.|
T Consensus 5 kirvkpehvigvtvafviieailty 29 (32)
T d1rh5c_ 5 KIRVKPEHVIGVTVAFVIIEAILTY 29 (32)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeccceEEEEEEehhhHHHHHhh
Confidence 4556778888999998877655555
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.93 E-value=2e+02 Score=25.33 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=23.8
Q ss_pred cccCCCCccccchhhHHhHHHHhhhcccch
Q psy5637 56 WLPKYKWKSDLSQDIVSGVTIAVVHIPQGV 85 (335)
Q Consensus 56 Wl~~Y~~~~~l~~D~iAGltv~~~~iPq~m 85 (335)
-+.+.++.+.....++.++++++.+||+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~ai~l~V~~iPEgL 196 (472)
T d1wpga4 167 PVHGGSWIRGAIYYFKIAVALAVAAIPEGL 196 (472)
T ss_dssp CCSSSCSSSCGGGHHHHHHHHHHHHSCTTH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhChhhH
Confidence 344555556677888999999999999996
No 7
>d1tv0a_ g.9.1.1 (A:) Defensin-related cryptdin 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.07 E-value=1.2e+02 Score=16.55 Aligned_cols=10 Identities=40% Similarity=0.435 Sum_probs=6.2
Q ss_pred cCCCCccCCC
Q psy5637 3 KLGKPVRKPG 12 (335)
Q Consensus 3 ~~~~~~~~~~ 12 (335)
|-||++|..+
T Consensus 12 krgervrgtc 21 (32)
T d1tv0a_ 12 KRGERVRGTC 21 (32)
T ss_dssp SSCEECSSCS
T ss_pred cCCcEeeeec
Confidence 4566666665
No 8
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=3.22 E-value=3.7e+02 Score=23.57 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=46.2
Q ss_pred CCCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCchhHHHHhhhhhhhhhcccc
Q psy5637 168 EVPPLWLL--PKLIVDGLVIAIIAFSINISMASILAKKMKYKIDSNQELLASGFSNIFASFFSC 229 (335)
Q Consensus 168 ~~P~~~~~--~~l~~~a~~iaiv~~~esls~ak~~a~~~~~~id~nqEL~a~G~aNi~ss~fgg 229 (335)
-.||++.+ .+++.+|..-++.++......--.++..++++.|.-|+-+.....|...++..|
T Consensus 227 ~~pd~~~L~~~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~rda~~v~~~~~~~si~~~ 290 (509)
T d2a65a1 227 WTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 290 (509)
T ss_dssp HSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTH
T ss_pred cCCCHHHhcChHHHHHHHHHHhhhhcccCCceeeehhhccchhhhcccceEEEecccceeeccc
Confidence 35677654 468888888888777665555556788888888888999999888877666544
No 9
>d1adta3 g.51.1.1 (A:386-529) Second Zn-domain of early E2A DNA-binding protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]}
Probab=3.09 E-value=1.7e+02 Score=22.22 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=13.4
Q ss_pred hccccccccCCCCcccc
Q psy5637 50 LFPILDWLPKYKWKSDL 66 (335)
Q Consensus 50 ~~P~~~Wl~~Y~~~~~l 66 (335)
.+|=+.|-|+|+.|+..
T Consensus 113 ~iPeFkW~p~~q~kn~v 129 (144)
T d1adta3 113 VVPQFKWSTKHQYRNVS 129 (144)
T ss_dssp CCCBCCCCGGGSCBCCC
T ss_pred cccceeecccceeeeee
Confidence 57889999999976644
No 10
>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.01 E-value=2.4e+02 Score=19.97 Aligned_cols=17 Identities=18% Similarity=0.256 Sum_probs=13.9
Q ss_pred cccceeeccCCCCCCCC
Q psy5637 152 YHITTVGYIPTGFPVPE 168 (335)
Q Consensus 152 ~~v~ivG~Ip~glp~~~ 168 (335)
.|++++|.|..|.|...
T Consensus 2 ~~IPv~g~v~AG~p~~a 18 (126)
T d1jhfa2 2 EGLPLVGRVAADEPLLA 18 (126)
T ss_dssp SSEEEECCCCTTSCTTC
T ss_pred CCCCEEEEecCCCCChh
Confidence 47889999999988654
Done!