RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5637
(335 letters)
>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family. Mutations
in human SLC26A2 lead to several human diseases.
Length = 279
Score = 125 bits (316), Expect = 7e-34
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 15/204 (7%)
Query: 77 AVVHIPQGVVEWCKSQFSDTQCCNPFSWLVQLFPILDWLPKYKWKSDLSQDIVSGVTIAV 136
A+ + + W + +L+ + + L K W + + V +
Sbjct: 54 ALFDLVDNLWNWPTLVIG----LSFLIFLLIIKLLPKRLKKLFWIPAPAPLVAVIVATVI 109
Query: 137 VHIPQASSKFGLKENYHITTVGYIPTGFPVPEVPPLWLLPKLIVD----GLVIAIIAFSI 192
+ L + Y ++ +G IP+G P P +P + L L++D L +AI+
Sbjct: 110 SY-------IFLADRYGVSIIGEIPSGLPPPSLPDVPLDWSLLLDLLPIALALAIVGLLE 162
Query: 193 NISMASILAKKMKYKIDSNQELLASGFSNIFASFFSCVPFAASLSRSLIQLQTGGQTQLA 252
+I A AKK YKIDSN+EL+A G +NI +S F P S SRS + ++ G +TQL+
Sbjct: 163 SILTAKSFAKKKGYKIDSNKELVAQGIANIVSSLFGGYPATGSFSRSAVNVKAGAKTQLS 222
Query: 253 SGISCGCLAIVLLYVGPFFQPLPH 276
+ + +VLL++ P +P
Sbjct: 223 GIVMAVVVLLVLLFLTPLLAYIPM 246
Score = 65.7 bits (161), Expect = 3e-12
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 276 HGFSNIFASFFSCVPFAASLSRSLIQLQTGGQTQLASGVSCGCLAIVLLYVGPFFQPLPH 335
G +NI +S F P S SRS + ++ G +TQL+ V + +VLL++ P +P
Sbjct: 187 QGIANIVSSLFGGYPATGSFSRSAVNVKAGAKTQLSGIVMAVVVLLVLLFLTPLLAYIPM 246
>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1. The SulP
family is a large and ubiquitous family with over 30
sequenced members derived from bacteria, fungi, plants
and animals. Many organisms including Bacillus subtilis,
Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis
thaliana and Caenorhabditis elegans possess multiple
SulP family paralogues. Many of these proteins are
functionally characterized, and all are sulfate uptake
transporters. Some transport their substrate with high
affinities, while others transport it with relatively
low affinities. Most function by SO42- :H+symport, but
SO42- :HCO3- antiport has been reported for the rat
protein (spP45380). The bacterial proteins vary in size
from 434 residues to 566 residues with one exception, a
Mycobacterium tuberculosis protein with 784 residues.
The eukaryotic proteins vary in size from 611 residues
to 893 residues with one exception, a protein designated
"early nodulin 70 protein" from Glycine max which is
reported to be of 485 residues. Thus, the eukaryotic
proteins are almost without exception larger than the
prokaryotic proteins. These proteins exhibit 10-13
putative transmembrane a-helical spanners (TMSs)
depending on the protein. The phylogenetic tree for the
SulP family reveals five principal branches. Three of
these are bacterial specific as follows: one bears a
single protein from M. tuberculosis; a second bears two
proteins, one from M. tuberculosis, the other from
Synechocystis sp, and the third bears all remaining
prokaryotic proteins. The remaining two clusters bear
only eukaryotic proteins with the animal proteins all
localized to one branch and the plant and fungal
proteins localized to the other. The generalized
transport reactions catalyzed by SulP family proteins
are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+
(in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3-
(out) [Transport and binding proteins, Anions].
Length = 563
Score = 113 bits (285), Expect = 7e-28
Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 132 VTIAVVHIPQASSKFGLKENYHITTVGYIPTGFPV-PEVPPLW-LLPKLIVDGLVIAIIA 189
+ VV + + GL + ++ +G+IP+G P + W LLP L D + IAI+
Sbjct: 213 APLLVVILATLAVTIGLHKKQGVSILGHIPSGLSFFPPITLDWELLPTLAPDAIAIAIVG 272
Query: 190 FSINISMASILAKKMKYKIDSNQELLASGFSNIFASFFSCVPFAASLSRSLIQLQTGGQT 249
+I++A A+ YKID+NQEL+A G +NI SFFSC P SLSR+ + + G +T
Sbjct: 273 LIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRT 332
Query: 250 QLASGISCGCLAIVLLYVGPFFQPLP 275
QL+ ++ + +VLL + P F +P
Sbjct: 333 QLSGVVTAIVVLLVLLVLTPLFYYIP 358
Score = 54.6 bits (132), Expect = 3e-08
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 277 GFSNIFASFFSCVPFAASLSRSLIQLQTGGQTQLASGVSCGCLAIVLLYVGPFFQPLP 334
G +NI SFFSC P SLSR+ + + G +TQL+ V+ + +VLL + P F +P
Sbjct: 301 GIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIP 358
Score = 39.2 bits (92), Expect = 0.002
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 110 PILDWLPKYKWKSDLSQDIVSGVTIAVVHIPQA 142
P+L WLP Y+ K D+++G+T+ ++ IPQA
Sbjct: 1 PVLRWLPHYRLKK-FKGDLMAGLTVGILLIPQA 32
Score = 38.1 bits (89), Expect = 0.006
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 52 PILDWLPKYKWKSDLSQDIVSGVTIAVVHIPQ 83
P+L WLP Y+ K D+++G+T+ ++ IPQ
Sbjct: 1 PVLRWLPHYRLKK-FKGDLMAGLTVGILLIPQ 31
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 92.0 bits (229), Expect = 1e-20
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 130 SGVTIAVVHIPQASSKFGLKENYHITTVGYIPTGFPVPEVP--PLWLLPKLIVDGLVIAI 187
+ + + + F L + G +P+G P +P L LL L+ L +A+
Sbjct: 202 PLIALVLGTL--IVWIFPLDSLRYGEIPGSLPSGLPHFRLPNVSLSLLLALLPYALALAL 259
Query: 188 IAFSINISMASILAKKMKYKIDSNQELLASGFSNIFASFFSCVPFAASLSRSLIQLQTGG 247
+ ++ A K DSN+EL+A G +NI + F +P S+SRS I +++G
Sbjct: 260 LGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIPATGSISRSAINIKSGA 319
Query: 248 QTQLASGISCGCLAIVLLYVGPFFQPLPH 276
+T+L+ I L ++LL++ P +P
Sbjct: 320 RTRLSGIIHAALLLLLLLFLAPLVSYIPL 348
Score = 53.4 bits (129), Expect = 7e-08
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 276 HGFSNIFASFFSCVPFAASLSRSLIQLQTGGQTQLASGVSCGCLAIVLLYVGPFFQPLPH 335
G +NI + F +P S+SRS I +++G +T+L+ + L ++LL++ P +P
Sbjct: 289 QGIANIASGLFGGIPATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPL 348
Score = 33.4 bits (77), Expect = 0.16
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 31/117 (26%)
Query: 104 WLVQLFPILDWLPKYKWKSDLSQDIVSGVTIAVVHIPQASSKFGLKENYHITTVGYIPTG 163
L P L WLP Y ++S L D+++G+T+A V +P A
Sbjct: 2 RLRSEIPTLKWLPYY-FRSWLRGDLLAGLTVAAVALPLA-------------------MA 41
Query: 164 FP-VPEVPPLWLLPKLIVDGLVIAIIAFSINIS----------MASILAKKMKYKID 209
F VPP L IV G++ A+ S + +A+++A ++ +
Sbjct: 42 FAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLA 98
Score = 30.3 bits (69), Expect = 1.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 46 WLVQLFPILDWLPKYKWKSDLSQDIVSGVTIAVVHIPQ 83
L P L WLP Y ++S L D+++G+T+A V +P
Sbjct: 2 RLRSEIPTLKWLPYY-FRSWLRGDLLAGLTVAAVALPL 38
>gnl|CDD|205965 pfam13792, Sulfate_tra_GLY, Sulfate transporter N-terminal domain
with GLY motif. This domain is found usually at the
N-terminus of sulfate-transporter proteins. It carries
a highly conserved GLY sequence motif, but the function
of the domain is not known.
Length = 83
Score = 52.0 bits (126), Expect = 5e-09
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 51 FPILDWLPKYKWKSDLSQDIVSGVTIAVVHIPQGV 85
PIL WLPKY S L D+++G+T+A+V IPQG+
Sbjct: 1 LPILQWLPKYSR-SWLKGDLIAGLTVALVLIPQGM 34
Score = 51.6 bits (125), Expect = 8e-09
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 109 FPILDWLPKYKWKSDLSQDIVSGVTIAVVHIPQA 142
PIL WLPKY S L D+++G+T+A+V IPQ
Sbjct: 1 LPILQWLPKYSR-SWLKGDLIAGLTVALVLIPQG 33
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 41.5 bits (98), Expect = 5e-04
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 162 TGFPVPEVPPLWLLPKLI--VDG--------LVIAIIAFSINISM---------ASILAK 202
G +P + P ++LP + DG L+ A++ + +++M A +L
Sbjct: 246 QGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDG 305
Query: 203 KMKYKIDSNQELLASGFSNIFASFFSCVPFAASLSRSLIQLQTGGQTQLASGISCGCLAI 262
K +N EL+ G NI A FF + A+++RS ++ G + +++ I + +
Sbjct: 306 MTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLL 365
Query: 263 VLLYVGPFFQPLP 275
LL + P LP
Sbjct: 366 ALLVLAPLLSYLP 378
Score = 28.4 bits (64), Expect = 6.8
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 277 GFSNIFASFFSCVPFAASLSRSLIQLQTGGQTQLASGVSCGCLAIVLLYVGPFFQPLP 334
G NI A FF + A+++RS ++ G + +++ + + + LL + P LP
Sbjct: 321 GLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLP 378
>gnl|CDD|216158 pfam00860, Xan_ur_permease, Permease family. This family includes
permeases for diverse substrates such as xanthine,
uracil, and vitamin C. However many members of this
family are functionally uncharacterized and may
transport other substrates. Members of this family have
ten predicted transmembrane helices.
Length = 389
Score = 32.7 bits (75), Expect = 0.24
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 176 PKLIVDGLVIAIIAFSINISM----ASILAKKMKYKIDSNQELLASGFSNIFASFFSCVP 231
P LI+ L +A++A + A + + +K K D + LLA G + + + F P
Sbjct: 231 PGLILTVLAVALVAIVESTGDIRAVAKVSGRDLKPKPDLRRGLLADGLATLLSGLFGAFP 290
Query: 232 FAA-SLSRSLIQLQTGGQTQLASGISCGCLAIVLLYVG--PFFQPL 274
+ + ++ L T++ S ++L+ +G P F L
Sbjct: 291 TTTYAENIGVVAL-----TKVYSRRVGVTAGVILILLGLIPKFAAL 331
>gnl|CDD|187695 cd07182, RNase_HII_bacteria_HII_like, bacterial Ribonuclease
HII-like. Ribonuclease H (RNase H) is classified into
two families, type I (prokaryotic RNase HI, eukaryotic
RNase H1 and viral RNase H) and type II (prokaryotic
RNase HII and HIII, and eukaryotic RNase H2). RNase H
endonucleolytically hydrolyzes an RNA strand when it is
annealed to a complementary DNA strand in the presence
of divalent cations, in DNA replication and repair.
Bacterial RNase HII has a role in primer removal based
on its involvement in ribonucleotide-specific catalytic
activity in the presence of RNA/DNA hybrid substrates.
Several bacteria, such as Bacillus subtilis, have two
different type II RNases H, RNases HII and HIII; double
deletion of these leads to cellular lethality. It
appears that type I and type II RNases H also have
overlapping functions in cells, as over-expression of
Escherichia coli RNase HII can complement an RNase HI
deletion phenotype.
Length = 179
Score = 30.1 bits (69), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 11/36 (30%)
Query: 178 LIVDGL--------VIAII---AFSINISMASILAK 202
++VDG AI+ A S +I+ ASILAK
Sbjct: 93 VLVDGNRLPPLPIPQEAIVKGDAKSASIAAASILAK 128
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 28.9 bits (65), Expect = 3.9
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 231 PFAASLSRSLIQLQTGGQTQLASGISCG-----CLAIVLLYVGPFF-------QPLPHGF 278
P A L+ +LI+L GG+T L+ G G L ++L G L G
Sbjct: 162 PMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLDSGL 221
Query: 279 SNIFASFFSCVPFAAS 294
I A + F+ +
Sbjct: 222 YPILALAGGLLIFSLT 237
>gnl|CDD|183124 PRK11412, PRK11412, putative uracil/xanthine transporter;
Provisional.
Length = 433
Score = 28.2 bits (63), Expect = 6.5
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 13/121 (10%)
Query: 183 LVIAIIAFSINIS--MASILAKKMKYKIDSN------QELLASGFSNIFASFFSCVPFAA 234
++ A+I +NIS +I + Y + +A+GF + + +PF+
Sbjct: 242 ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSP 301
Query: 235 SLSRSLIQLQTGGQTQLASGISCGCLAIVLLYVGPFFQPLPHGFSNIFASFFSCVPFAAS 294
+S + QTG + + +V L L F +I S V +
Sbjct: 302 FVSSIGLLTQTGDYRRRSFIYGSVMCLLVAL-----IPALTRLFCSIPLPVSSAVMLVSY 356
Query: 295 L 295
L
Sbjct: 357 L 357
>gnl|CDD|227031 COG4687, COG4687, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 122
Score = 26.7 bits (59), Expect = 8.4
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 241 IQLQTGGQTQLASGISCGCLAIVLLYVGP--------FFQPLPHGFSNIFA 283
I T G+ + AS S L + YVG F ++F
Sbjct: 71 IFTDTQGKVRFASKDSGKILKKIREYVGNEKVVKSPSLLDTFKRAFKSLFK 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.449
Gapped
Lambda K H
0.267 0.0887 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,059,512
Number of extensions: 1598298
Number of successful extensions: 2114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2098
Number of HSP's successfully gapped: 53
Length of query: 335
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 238
Effective length of database: 6,635,264
Effective search space: 1579192832
Effective search space used: 1579192832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.2 bits)