RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5637
         (335 letters)



>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 126

 Score = 24.7 bits (54), Expect = 9.2
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 3/22 (13%)

Query: 28  VEWCKSQF---SDTQCCNPFSW 46
           +E C+  F    D  C NP+ +
Sbjct: 100 MELCEFAFNMKKDEVCVNPYHY 121



 Score = 24.7 bits (54), Expect = 9.2
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 3/22 (13%)

Query: 86  VEWCKSQF---SDTQCCNPFSW 104
           +E C+  F    D  C NP+ +
Sbjct: 100 MELCEFAFNMKKDEVCVNPYHY 121


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,287,665
Number of extensions: 58321
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 4
Length of query: 335
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,226,816
Effective search space: 305477184
Effective search space used: 305477184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)