Query psy5638
Match_columns 273
No_of_seqs 279 out of 2232
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 22:44:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 95.6 0.031 1E-06 53.0 8.1 102 112-248 40-147 (429)
2 3qe7_A Uracil permease; uracil 22.5 76 0.0026 29.5 4.3 47 199-245 306-353 (429)
3 2jo1_A Phospholemman; FXYD1, N 7.7 2.9E+02 0.01 19.1 2.7 22 195-216 23-44 (72)
4 1bts_A BAND 3 anion transport 6.5 2.8E+02 0.0097 15.3 1.8 19 14-32 6-24 (26)
5 2knc_A Integrin alpha-IIB; tra 6.4 5.9E+02 0.02 16.5 4.2 23 197-219 16-41 (54)
6 2jp3_A FXYD domain-containing 6.0 2.8E+02 0.0095 19.0 1.9 22 195-216 24-45 (67)
7 2l8s_A Integrin alpha-1; trans 5.8 6.5E+02 0.022 16.4 4.0 22 198-219 14-38 (54)
8 2k1a_A Integrin alpha-IIB; sin 4.8 6.8E+02 0.023 15.3 4.7 23 197-219 14-39 (42)
9 2zxe_G FXYD10, phospholemman-l 4.7 2.9E+02 0.0099 19.3 1.3 22 195-216 26-47 (74)
10 2ljb_A M2 protein, BM2 protein 3.3 8.6E+02 0.029 14.3 2.9 20 190-212 7-26 (35)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=95.59 E-value=0.031 Score=53.02 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=75.7
Q ss_pred CCcceeeecccccceeeeeeccCcccc-cCCchh-hhhhHHHHHHHHhcCCCCCCCCcccccCCCCCCCCCccccccCCc
Q psy5638 112 GVPPIVGIYMAFFPVFIYMLMGTSKHL-SMGTFS-VICMMTSKSVIMYADPKFLNPDHVIGQNSSSQNGSVPVNVISTGL 189 (273)
Q Consensus 112 ~~~p~~gl~~~~~~~~i~~l~G~s~~~-s~Gp~a-~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (273)
|++|..++++++++.++..+++..|.- ..|+.- -+..+.. +.. +
T Consensus 40 Gl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~-i~~-~-------------------------------- 85 (429)
T 3qe7_A 40 HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL-LLP-L-------------------------------- 85 (429)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHH-HGG-G--------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHH-HHh-c--------------------------------
Confidence 889999999999999998887655543 256542 2222221 111 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh--hcc--ccccccchhHHhhhhhhhHHHHHHhhhhhhhcc
Q psy5638 190 TPVQVASAVCLIVGVWHVILGFF--KLG--SLSVLMSDSMISGFTSGTAFIVISSQIKHVFGI 248 (273)
Q Consensus 190 ~~~~~~~~~tll~Gii~l~~g~~--rlG--~l~~~ls~~vi~GF~~g~a~~I~~sQl~~llG~ 248 (273)
.++.+....+++|+++++++++ |+| ++.+++|..++..|++.+++.+.-.++++.-|.
T Consensus 86 -g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~ 147 (429)
T 3qe7_A 86 -GYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLL 147 (429)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhcccc
Confidence 1455677799999999999998 876 899999988888889999999998888875443
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=22.51 E-value=76 Score=29.51 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHh-hccccccccchhHHhhhhhhhHHHHHHhhhhhh
Q psy5638 199 CLIVGVWHVILGFF-KLGSLSVLMSDSMISGFTSGTAFIVISSQIKHV 245 (273)
Q Consensus 199 tll~Gii~l~~g~~-rlG~l~~~ls~~vi~GF~~g~a~~I~~sQl~~l 245 (273)
...+|++.+++|++ +++.+...+|.||+.|-+.-.--.|..+-++.+
T Consensus 306 ~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l 353 (429)
T 3qe7_A 306 IGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVL 353 (429)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999987 799999999999999965444444555666666
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=7.68 E-value=2.9e+02 Score=19.13 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q psy5638 195 ASAVCLIVGVWHVILGFFKLGS 216 (273)
Q Consensus 195 ~~~~tll~Gii~l~~g~~rlG~ 216 (273)
.+.+.|++|++.++-+-+|+.+
T Consensus 23 fA~vLfi~GI~iilS~KckCk~ 44 (72)
T 2jo1_A 23 IAGILFILGILIVLSRRCRCKF 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccCC
Confidence 4455667777777666666554
No 4
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=6.53 E-value=2.8e+02 Score=15.27 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=13.5
Q ss_pred hhhhhhHHHHHHHHhcCcc
Q psy5638 14 GIYMAFFPVFIYMLMGTSK 32 (273)
Q Consensus 14 GLYss~~p~liY~~fGtS~ 32 (273)
.+.+..+..++|++|+.-+
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3567778889999998643
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.42 E-value=5.9e+02 Score=16.52 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHH---HHHhhcccccc
Q psy5638 197 AVCLIVGVWHVI---LGFFKLGSLSV 219 (273)
Q Consensus 197 ~~tll~Gii~l~---~g~~rlG~l~~ 219 (273)
.++.+.|+..+. +.+.|+||.-|
T Consensus 16 i~svl~GLllL~li~~~LwK~GFFkR 41 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWKVGFFKR 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 345556665544 78888888754
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.04 E-value=2.8e+02 Score=19.04 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q psy5638 195 ASAVCLIVGVWHVILGFFKLGS 216 (273)
Q Consensus 195 ~~~~tll~Gii~l~~g~~rlG~ 216 (273)
.+.+.|++|++.++-+-+|+.+
T Consensus 24 fA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 24 FGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCcccccC
Confidence 4455667777777666666554
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=5.84 E-value=6.5e+02 Score=16.37 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=14.4
Q ss_pred HHHHHHHHHHH---HHHhhcccccc
Q psy5638 198 VCLIVGVWHVI---LGFFKLGSLSV 219 (273)
Q Consensus 198 ~tll~Gii~l~---~g~~rlG~l~~ 219 (273)
++.+.|+..+. +.+.|+||.-|
T Consensus 14 ~svl~GLLLL~Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWKIGFFKR 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccC
Confidence 45555665544 78888888754
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=4.79 E-value=6.8e+02 Score=15.31 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHH---HHHhhcccccc
Q psy5638 197 AVCLIVGVWHVI---LGFFKLGSLSV 219 (273)
Q Consensus 197 ~~tll~Gii~l~---~g~~rlG~l~~ 219 (273)
.++.+.|+..+. +.+.|+||.-|
T Consensus 14 i~s~l~GLllL~li~~~LwK~GFFkR 39 (42)
T 2k1a_A 14 LVGVLGGLLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 345566666554 78889998644
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=4.67 E-value=2.9e+02 Score=19.30 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q psy5638 195 ASAVCLIVGVWHVILGFFKLGS 216 (273)
Q Consensus 195 ~~~~tll~Gii~l~~g~~rlG~ 216 (273)
.+.+.|++|++.++-+-+|.+|
T Consensus 26 fA~vLfi~GI~iilS~kcrCk~ 47 (74)
T 2zxe_G 26 VAAVLCVIGIIILLAGKCRCKF 47 (74)
T ss_dssp HHHHHHHHHHHHHTTTC-----
T ss_pred hHHHHHHHHHHHHHcCccccCC
Confidence 4455667777777666666654
No 10
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=3.32 E-value=8.6e+02 Score=14.26 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q psy5638 190 TPVQVASAVCLIVGVWHVILGFF 212 (273)
Q Consensus 190 ~~~~~~~~~tll~Gii~l~~g~~ 212 (273)
+++.++ +...|+..+++.++
T Consensus 7 Dplvia---A~IigiLHlilWil 26 (35)
T 2ljb_A 7 DPLVVA---ASIIGILHFIAWTI 26 (35)
T ss_dssp CTHHHH---HHHHHHHHHHHHHH
T ss_pred CcHHHH---HHHHHHHHHHHHHh
Confidence 345555 66778888877654
Done!