Query psy5638
Match_columns 273
No_of_seqs 279 out of 2232
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 22:44:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5638.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5638hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q66a1 a.160.1.1 (A:202-351) 9.3 1.4E+02 0.0099 21.9 3.8 39 226-269 26-64 (150)
2 d1q79a1 a.160.1.1 (A:215-364) 7.5 1.8E+02 0.013 21.2 3.7 39 226-269 26-64 (150)
3 d1q90m_ f.23.25.1 (M:) PetM su 4.0 1.7E+02 0.012 15.6 1.1 13 227-239 2-14 (34)
4 d1a6qa1 a.159.1.1 (A:297-368) 3.8 1.6E+02 0.012 18.8 1.1 12 6-17 46-57 (72)
5 d2nn5a1 d.129.3.5 (A:1-160) Hy 2.7 8.1E+02 0.059 16.8 4.5 40 232-271 118-159 (160)
6 d1f0la3 f.1.2.1 (A:201-380) Di 2.5 6.3E+02 0.046 17.5 3.3 34 238-271 139-172 (180)
7 d1qmya_ d.3.1.2 (A:) FMDV lead 2.0 4.3E+02 0.031 18.9 1.7 21 237-257 53-73 (156)
8 d1vdla_ a.5.2.1 (A:) Ubiquitin 1.9 3.9E+02 0.029 17.0 1.3 21 231-251 20-40 (80)
9 d1y74a1 a.194.1.1 (A:17-73) Li 1.8 3.3E+02 0.024 16.3 0.7 15 258-272 38-52 (57)
10 d2al6a1 a.11.2.1 (A:131-253) F 1.6 1.1E+03 0.079 15.0 3.9 50 216-271 72-121 (123)
No 1
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.34 E-value=1.4e+02 Score=21.89 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=27.7
Q ss_pred HhhhhhhhHHHHHHhhhhhhhccccCCCCCchhHHHHHHHHHhh
Q psy5638 226 ISGFTSGTAFIVISSQIKHVFGIALPRHSGPLKVILVNTDIYTV 269 (273)
Q Consensus 226 i~GF~~g~a~~I~~sQl~~llG~~~~~~~~~~~~~~~~~~~~~~ 269 (273)
+-||..|+.+.|+.+.+-.+.. ...+..++..+..++.+
T Consensus 26 ~~GylGGI~waILvArvCql~p-----~a~~~~ll~~FF~~ys~ 64 (150)
T d2q66a1 26 IFGFPGGVAWAMLVARICQLYP-----NACSAVILNRFFIILSE 64 (150)
T ss_dssp GGTSCCHHHHHHHHHHHHHHST-----TCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhC
Confidence 4799999999999999877652 22344566666666554
No 2
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.47 E-value=1.8e+02 Score=21.20 Aligned_cols=39 Identities=10% Similarity=0.253 Sum_probs=28.0
Q ss_pred HhhhhhhhHHHHHHhhhhhhhccccCCCCCchhHHHHHHHHHhh
Q psy5638 226 ISGFTSGTAFIVISSQIKHVFGIALPRHSGPLKVILVNTDIYTV 269 (273)
Q Consensus 226 i~GF~~g~a~~I~~sQl~~llG~~~~~~~~~~~~~~~~~~~~~~ 269 (273)
+-||..|+++.|+.+.+-.+.. + ..+..++..+..++.+
T Consensus 26 ~~GflGGI~waILvArvCql~P----n-a~~~~ll~~FF~~ys~ 64 (150)
T d1q79a1 26 ILGFLGGVSWAMLVARTCQLYP----N-AIASTLVHKFFLVFSK 64 (150)
T ss_dssp TTTSBCHHHHHHHHHHHHHHST----T-CCHHHHHHHHHHHHHS
T ss_pred cccccHHHHHHHHHHHHHHHCC----C-CCHHHHHHHHHHHHhc
Confidence 4699999999999999877652 2 2345666666666654
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.98 E-value=1.7e+02 Score=15.55 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=9.3
Q ss_pred hhhhhhhHHHHHH
Q psy5638 227 SGFTSGTAFIVIS 239 (273)
Q Consensus 227 ~GF~~g~a~~I~~ 239 (273)
.||++|.++.++-
T Consensus 2 a~fiagta~tmig 14 (34)
T d1q90m_ 2 AEFIAGTALTMVG 14 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CceecchhHHHHH
Confidence 3788888887653
No 4
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.80 E-value=1.6e+02 Score=18.76 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=10.3
Q ss_pred hcCCCccchhhh
Q psy5638 6 LAGVPPIVGIYM 17 (273)
Q Consensus 6 lAgvpp~~GLYs 17 (273)
+-|+||-=|||+
T Consensus 46 Ip~LPPGGGL~s 57 (72)
T d1a6qa1 46 IPSLPPGGELAS 57 (72)
T ss_dssp CSSCCTTTGGGG
T ss_pred CCCCCCCccHHH
Confidence 568999999987
No 5
>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}
Probab=2.70 E-value=8.1e+02 Score=16.82 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=26.7
Q ss_pred hhHHHHHHhhhhhhhcc-cc-CCCCCchhHHHHHHHHHhhhc
Q psy5638 232 GTAFIVISSQIKHVFGI-AL-PRHSGPLKVILVNTDIYTVIH 271 (273)
Q Consensus 232 g~a~~I~~sQl~~llG~-~~-~~~~~~~~~~~~~~~~~~~i~ 271 (273)
+++++..+.+|+..+-- +. +....+.++...+...++|+.
T Consensus 118 ~~GW~~~Ld~L~~~leg~~~~~~~~~~~~~~~~y~~~l~~~~ 159 (160)
T d2nn5a1 118 IAGWSIVLNRLKQVVETPDAAPEKIDFPQIENHYLEKLTNLE 159 (160)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHhhc
Confidence 45899999999988743 32 333444566666667777664
No 6
>d1f0la3 f.1.2.1 (A:201-380) Diphtheria toxin, middle domain {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=2.47 E-value=6.3e+02 Score=17.48 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=19.8
Q ss_pred HHhhhhhhhccccCCCCCchhHHHHHHHHHhhhc
Q psy5638 238 ISSQIKHVFGIALPRHSGPLKVILVNTDIYTVIH 271 (273)
Q Consensus 238 ~~sQl~~llG~~~~~~~~~~~~~~~~~~~~~~i~ 271 (273)
+..|--.+.|--++-.-..+.+++.++++|+-.+
T Consensus 139 mvaqaiplvgelvdigfaaynfvesiinlfqvvh 172 (180)
T d1f0la3 139 MVAQAIPLVGELVDIGFAAYNFVESIINLFQVVH 172 (180)
T ss_dssp HHHHHHHHHCCC--CCTTTTHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 3456666666655444445567777777776553
No 7
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=1.99 E-value=4.3e+02 Score=18.92 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=15.1
Q ss_pred HHHhhhhhhhccccCCCCCch
Q psy5638 237 VISSQIKHVFGIALPRHSGPL 257 (273)
Q Consensus 237 I~~sQl~~llG~~~~~~~~~~ 257 (273)
=.+.|+....|++......|.
T Consensus 53 ~~I~~l~e~Tgl~L~~GgPPa 73 (156)
T d1qmya_ 53 EAIKQLEDLTGLELHEGGPPA 73 (156)
T ss_dssp HHHHHHHHHHCCCCSSCCCHH
T ss_pred HHHHHHHhhhceeeccCCCCE
Confidence 356899999999976544343
No 8
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.91 E-value=3.9e+02 Score=17.03 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=16.1
Q ss_pred hhhHHHHHHhhhhhhhccccC
Q psy5638 231 SGTAFIVISSQIKHVFGIALP 251 (273)
Q Consensus 231 ~g~a~~I~~sQl~~llG~~~~ 251 (273)
++=--..++.|+|.+.|+..+
T Consensus 20 s~~hqQ~lLNQLrEITGIqD~ 40 (80)
T d1vdla_ 20 AQKHQQTFLNQLREITGINDA 40 (80)
T ss_dssp TTSCHHHHHHHHHHHSCCCCH
T ss_pred hhhHHHHHHHHHHHHhCCCcH
Confidence 344556889999999999754
No 9
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.83 E-value=3.3e+02 Score=16.33 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=9.5
Q ss_pred hHHHHHHHHHhhhcC
Q psy5638 258 KVILVNTDIYTVIHT 272 (273)
Q Consensus 258 ~~~~~~~~~~~~i~~ 272 (273)
+|+..++++++++.+
T Consensus 38 dF~~avREVYehvye 52 (57)
T d1y74a1 38 RFCSAIREVYEQLYD 52 (57)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 356666777776654
No 10
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=1.60 E-value=1.1e+03 Score=14.95 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=30.4
Q ss_pred ccccccchhHHhhhhhhhHHHHHHhhhhhhhccccCCCCCchhHHHHHHHHHhhhc
Q psy5638 216 SLSVLMSDSMISGFTSGTAFIVISSQIKHVFGIALPRHSGPLKVILVNTDIYTVIH 271 (273)
Q Consensus 216 ~l~~~ls~~vi~GF~~g~a~~I~~sQl~~llG~~~~~~~~~~~~~~~~~~~~~~i~ 271 (273)
.+-+|+|..++.....------+..+.+..-|.+. ..--..+.+++++++
T Consensus 72 ~L~~flP~~~l~~~~~~~~~k~I~~~~k~~~gls~------~eA~~~fL~~~~~l~ 121 (123)
T d2al6a1 72 GLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNR------EESILKFFEILSPVY 121 (123)
T ss_dssp CGGGTSCHHHHHSSCHHHHHHHHHHHHHTTTTCCH------HHHHHHHHHHHTTTC
T ss_pred hHHhcCChHHHhhcccHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcc
Confidence 36789999999976544434445555566666542 233455566666654
Done!