RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5638
(273 letters)
>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1. The SulP
family is a large and ubiquitous family with over 30
sequenced members derived from bacteria, fungi, plants
and animals. Many organisms including Bacillus subtilis,
Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis
thaliana and Caenorhabditis elegans possess multiple
SulP family paralogues. Many of these proteins are
functionally characterized, and all are sulfate uptake
transporters. Some transport their substrate with high
affinities, while others transport it with relatively
low affinities. Most function by SO42- :H+symport, but
SO42- :HCO3- antiport has been reported for the rat
protein (spP45380). The bacterial proteins vary in size
from 434 residues to 566 residues with one exception, a
Mycobacterium tuberculosis protein with 784 residues.
The eukaryotic proteins vary in size from 611 residues
to 893 residues with one exception, a protein designated
"early nodulin 70 protein" from Glycine max which is
reported to be of 485 residues. Thus, the eukaryotic
proteins are almost without exception larger than the
prokaryotic proteins. These proteins exhibit 10-13
putative transmembrane a-helical spanners (TMSs)
depending on the protein. The phylogenetic tree for the
SulP family reveals five principal branches. Three of
these are bacterial specific as follows: one bears a
single protein from M. tuberculosis; a second bears two
proteins, one from M. tuberculosis, the other from
Synechocystis sp, and the third bears all remaining
prokaryotic proteins. The remaining two clusters bear
only eukaryotic proteins with the animal proteins all
localized to one branch and the plant and fungal
proteins localized to the other. The generalized
transport reactions catalyzed by SulP family proteins
are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+
(in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3-
(out) [Transport and binding proteins, Anions].
Length = 563
Score = 111 bits (279), Expect = 1e-27
Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 26/157 (16%)
Query: 96 LIVGIWHV--RMAYSILAGVPPIVGIYMAFFPVFIYMLMGTSKHLSMGTFSVICMMTSKS 153
L VGI + MAY+ILAG+ PI G+Y +F P FIY L GTS+ +++G +V+ ++
Sbjct: 22 LTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSV 81
Query: 154 VIMYADPKFLNPDHVIGQNSSSQNGSVPVNVISTGLTPVQVASAVCLIVGVWHVILGFFK 213
+ + D +++A + L+ G++ VILG +
Sbjct: 82 IARVGLQYLFDCDA------------------------IRLAFTLTLLAGIFQVILGLLR 117
Query: 214 LGSLSVLMSDSMISGFTSGTAFIVISSQIKHVFGIAL 250
LG L +S ++ISGF +G A + SQ+K + GI++
Sbjct: 118 LGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISI 154
Score = 66.6 bits (163), Expect = 2e-12
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 1 MAYSILAGVPPIVGIYMAFFPVFIYMLMGTSKHLSMGTFSVICMMTSKSVIMYADP 56
MAY+ILAG+ PI G+Y +F P FIY L GTS+ +++G +V+ ++ +
Sbjct: 33 MAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGLQ 88
>gnl|CDD|205965 pfam13792, Sulfate_tra_GLY, Sulfate transporter N-terminal domain
with GLY motif. This domain is found usually at the
N-terminus of sulfate-transporter proteins. It carries
a highly conserved GLY sequence motif, but the function
of the domain is not known.
Length = 83
Score = 71.3 bits (176), Expect = 3e-16
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 1 MAYSILAGVPPIVGIYMAFFPVFIYMLMGTSKHLSMGTFSVICMMTSKSV 50
MAY++LAG+PP+ G+Y +F P IY L G+S+HLS+G + I ++ +V
Sbjct: 34 MAYALLAGLPPVYGLYASFVPPLIYALFGSSRHLSVGPTAAISLLVGAAV 83
Score = 71.3 bits (176), Expect = 3e-16
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 105 MAYSILAGVPPIVGIYMAFFPVFIYMLMGTSKHLSMGTFSVICMMTSKSV 154
MAY++LAG+PP+ G+Y +F P IY L G+S+HLS+G + I ++ +V
Sbjct: 34 MAYALLAGLPPVYGLYASFVPPLIYALFGSSRHLSVGPTAAISLLVGAAV 83
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 76.9 bits (190), Expect = 6e-16
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 30/147 (20%)
Query: 105 MAYSILAGVPPIVGIYMAFFPVFIYMLMGTSKHLSMGTFSVICMMTSKSVIMYADPKFLN 164
MA++I AGVPP G+Y + IY L G S+ L G ++ + + +
Sbjct: 40 MAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVE----- 94
Query: 165 PDHVIGQNSSSQNGSVPVNVISTGLTPVQVASAVCLIVGVWHVILGFFKLGSLSVLMSDS 224
T + +A L+ GV+ ++LG +LG L +
Sbjct: 95 -------------------------TGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRP 129
Query: 225 MISGFTSGTAFIVISSQIKHVFGIALP 251
++ GFT+G A ++I +Q+ + G+A
Sbjct: 130 VLIGFTAGIAILIILTQLPVLLGLASK 156
Score = 45.7 bits (109), Expect = 1e-05
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 1 MAYSILAGVPPIVGIYMAFFPVFIYMLMGTSKHLSMGTFSVICMMTSKSV 50
MA++I AGVPP G+Y + IY L G S+ L G ++ + +
Sbjct: 40 MAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVI 89
>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family. Mutations
in human SLC26A2 lead to several human diseases.
Length = 279
Score = 52.6 bits (127), Expect = 4e-08
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 209 LGFFKLGSLSVLMSDSMISGFTSGTAFIVISSQIKHVFGIALPRHSGPLKVILVNTDIYT 268
LG +LG L +S ++ISGF +G A +++ SQ+K + G++ RHSG + V+ ++
Sbjct: 1 LGLLRLGFLVEFLSRAVISGFMAGAAILILLSQLKGLLGLSNTRHSGIVSVLRA---LFD 57
Query: 269 VIHT 272
++
Sbjct: 58 LVDN 61
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 38.8 bits (91), Expect = 0.002
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 33/147 (22%)
Query: 105 MAYSILAGVPPIVGIYMAFFPVFIYMLMGTSKHLSMGTFSVICMMTSKSVIMYADPKFLN 164
MA +I +GVPP G+Y A + L G S+ FSV + VI+Y
Sbjct: 48 MALAIASGVPPQYGLYTAAVAGIVIALTGGSR------FSVSGPTAAFVVILY------- 94
Query: 165 PDHVIGQNSSSQNGSVPVNVISTGLTPVQVASAVCLIVGVWHVILGFFKLGSLSVLMSDS 224
PV GL + VA+ L+ G+ +++G +LG L + S
Sbjct: 95 ----------------PV-SQQFGLAGLLVAT---LMSGIILILMGLARLGRLIEYIPLS 134
Query: 225 MISGFTSGTAFIVISSQIKHVFGIALP 251
+ GFTSG ++ + QIK FG+ +
Sbjct: 135 VTLGFTSGIGIVIATLQIKDFFGLQMA 161
>gnl|CDD|192849 pfam11840, DUF3360, Protein of unknown function (DUF3360). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 489 to 517 amino acids in
length.
Length = 491
Score = 33.2 bits (76), Expect = 0.15
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 189 LTPVQVAS-----AVCLIVGVWHVILGFFKLGSLSV-LMSDSMISGFTSGTAFIVISSQI 242
L P+ A+ A+ +++GV+ +IL FK GS V L S+ + G FI SQI
Sbjct: 132 LIPLIAAAGGHPLALGILIGVFGLILSIFKGGSKLVNLTSEGVCGGLLIYLGFIGTISQI 191
Query: 243 KHVFGIALPRHSGPLK--VILVNTDIYTVI 270
K +F A G + VILV IY +
Sbjct: 192 KKLFAWAGGFGMGYIAFVVILVTIVIYAYL 221
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 30.6 bits (69), Expect = 1.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 232 GTAFIVISSQIKHVFGIA---LPRHSGPLKVILVNTDI 266
G A IV+SS++ V G++ L G LK VN +
Sbjct: 453 GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 28.2 bits (63), Expect = 5.1
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 55 DPKFLNPDHVIGQNSSSQNGSVPVNVISTGLTPV 88
DP++ P+ I S+Q S P ++T L+PV
Sbjct: 320 DPRYAAPEQYI---MSTQTPSAPSAPVATALSPV 350
Score = 28.2 bits (63), Expect = 5.1
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 159 DPKFLNPDHVIGQNSSSQNGSVPVNVISTGLTPV 192
DP++ P+ I S+Q S P ++T L+PV
Sbjct: 320 DPRYAAPEQYI---MSTQTPSAPSAPVATALSPV 350
>gnl|CDD|131890 TIGR02843, CyoB, cytochrome o ubiquinol oxidase, subunit I.
Cytochrome o terminal oxidase complex is the component
of the aerobic respiratory chain which reacts with
oxygen, reducing it to water with the concomitant
transport of 4 protons across the membrane. Also known
as the cytochrome bo complex, cytochrome o ubiquinol
oxidase contains four subunits, two heme b cofactors and
a copper atom which is believed to be the oxygen active
site. This complex is structurally related to the
cytochrome caa3 oxidases which utilize cytochrome c as
the reductant and contain heme a cofactors, as well as
the intermediate form aa3 oxidases which also react
directly with quinones as the reductant [Energy
metabolism, Electron transport].
Length = 646
Score = 27.7 bits (62), Expect = 7.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 12 IVGIYMAFFPVFIYMLMGTSKHLS 35
+G Y+AF P++I MG ++ L+
Sbjct: 460 FIGFYLAFMPLYILGFMGMTRRLN 483
Score = 27.7 bits (62), Expect = 7.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 116 IVGIYMAFFPVFIYMLMGTSKHLS 139
+G Y+AF P++I MG ++ L+
Sbjct: 460 FIGFYLAFMPLYILGFMGMTRRLN 483
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.138 0.413
Gapped
Lambda K H
0.267 0.0887 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,731,815
Number of extensions: 1301527
Number of successful extensions: 2006
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1993
Number of HSP's successfully gapped: 101
Length of query: 273
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 178
Effective length of database: 6,723,972
Effective search space: 1196867016
Effective search space used: 1196867016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (25.8 bits)