RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5638
         (273 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.94
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 30/100 (30%)

Query: 179 SVPVNVI-----------STGLTPVQVASAVCLIVGVWHVILGFFKLGSLSVLMSDSMIS 227
           S P+  +             G TP ++ S +    G            S  ++ +   I+
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-----------SQGLVTA-VAIA 284

Query: 228 GFTSGTAFIVISSQ-IKHVFGI------ALPRHSGPLKVI 260
              S  +F V   + I  +F I      A P  S P  ++
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,084,210
Number of extensions: 238158
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 8
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.4 bits)