BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5641
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 10/139 (7%)
Query: 38 LSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYK 97
LS++ IR L P G P + GLRN GNTC++N+ILQCL + LA+YF + Y+
Sbjct: 43 LSASQIRNLNP-----VFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQ 97
Query: 98 IDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQ 157
D++R N G KGEV E+ +++K++W+ Y FK+ I K Q+ G +Q
Sbjct: 98 DDINRSNLL-----GHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 152
Query: 158 HDAQEFLMWLLDKVHEDLN 176
D+QE L++L+D +HEDLN
Sbjct: 153 QDSQELLLFLMDGLHEDLN 171
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 81/139 (58%), Gaps = 10/139 (7%)
Query: 38 LSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYK 97
LS++ IR L P G P + GLRN GNTC+ N+ILQCL + LA+YF + Y+
Sbjct: 43 LSASQIRNLNP-----VFGGSGPALTGLRNLGNTCYXNSILQCLCNAPHLADYFNRNCYQ 97
Query: 98 IDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQ 157
D++R N G KGEV E+ ++ K++W+ Y FK+ I K Q+ G +Q
Sbjct: 98 DDINRSNLL-----GHKGEVAEEFGIIXKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 152
Query: 158 HDAQEFLMWLLDKVHEDLN 176
D+QE L++L D +HEDLN
Sbjct: 153 QDSQELLLFLXDGLHEDLN 171
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE 119
PG+ GL N GNT F+N+ LQCLS+T L +YF+ D+Y+ +++R N G KGE+ E
Sbjct: 6 PGLCGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPL-----GMKGEIAE 60
Query: 120 QLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
A L+K +WS FK + ++ Q+ G Q D+QE L +LLD +HEDLN
Sbjct: 61 AYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLN 117
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTK 114
N G+ GLRN GNTCF+N+ILQCLS+T L +Y + Y D+ + ++
Sbjct: 28 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTA----- 82
Query: 115 GEVTEQLAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
+ E+ A L+++IW+ S N +S ++FK I +Y ++ G NQ DAQEFL +LLD +H
Sbjct: 83 --LVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN 140
Query: 174 DLN 176
++N
Sbjct: 141 EVN 143
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTK 114
N G+ GLRN GNTCF+N+ILQCLS+T L +Y + Y D+ + ++
Sbjct: 2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTA----- 56
Query: 115 GEVTEQLAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
+ E+ A L+++IW+ S N +S ++FK I +Y ++ G NQ DAQEFL +LLD +H
Sbjct: 57 --LVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN 114
Query: 174 DLN 176
++N
Sbjct: 115 EVN 117
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTK 114
N G+ GLRN GNTCF+N+ILQCLS+T L +Y + Y D+ + ++
Sbjct: 21 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTA----- 75
Query: 115 GEVTEQLAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
+ E+ A L+++IW+ S N +S ++FK I +Y ++ G NQ DAQEFL +LLD +H
Sbjct: 76 --LVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN 133
Query: 174 DLN 176
++N
Sbjct: 134 EVN 136
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTK 114
N G+ GLRN GNT F+N+ILQCLS+T L +Y + Y D+ + ++
Sbjct: 2 NSKSAQGLAGLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTA----- 56
Query: 115 GEVTEQLAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
+ E+ A L+++IW+ S N +S ++FK I +Y ++ G NQ DAQEFL +LLD +H
Sbjct: 57 --LVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN 114
Query: 174 DLN 176
++N
Sbjct: 115 EVN 117
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 15/120 (12%)
Query: 61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
G +GLRN GNTCF+NA+LQCLS T L ++ + ++ ++ G E+TE
Sbjct: 21 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP--------GGGRAQELTEA 72
Query: 121 LAVLLKSIW---SC-SYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
A ++ ++W SC + NP +F+ + KY + G +Q DAQEFL L++++H ++N
Sbjct: 73 FADVIGALWHPDSCEAVNP---TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEIN 129
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 15/120 (12%)
Query: 61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
G +GLRN GNTCF+NA+LQCLS T L ++ + ++ ++ G E+TE
Sbjct: 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP--------GGGRAQELTEA 53
Query: 121 LAVLLKSIW---SC-SYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
A ++ ++W SC + NP +F+ + KY + G +Q DAQEFL L++++H ++N
Sbjct: 54 FADVIGALWHPDSCEAVNP---TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEIN 110
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 15/120 (12%)
Query: 61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
G +GLRN GNTCF+NA+LQCLS T L ++ + ++ ++ G E+TE
Sbjct: 15 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP--------GGGRAQELTEA 66
Query: 121 LAVLLKSIW---SC-SYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
A ++ ++W SC + NP +F+ + KY + G +Q DAQEFL L++++H ++N
Sbjct: 67 FADVIGALWHPDSCEAVNP---TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEIN 123
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 46.6 bits (109), Expect = 8e-06, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 33/149 (22%)
Query: 46 LPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNK 105
+P KPL PG G+RN GN+C++N+++Q L +V KI
Sbjct: 334 VPLKPLFG------PGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKI------- 380
Query: 106 FNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQ--------------------FKVII 145
F + + + Q+A L + S Y+ + FK +I
Sbjct: 381 FQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALI 440
Query: 146 DKYGTQYRGNNQHDAQEFLMWLLDKVHED 174
K ++ N Q DAQEF + L++ V +
Sbjct: 441 GKGHPEFSTNRQQDAQEFFLHLINMVERN 469
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGE 116
++ G+ GL N GNTCF+++ILQCL H + + + + R+
Sbjct: 136 ERRDGLSGLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKI 195
Query: 117 VTEQLAVL-LKSIWSCSYNPDISNQFKVIID---KYGTQYRGNNQHDAQEFLMWLLDKVH 172
V E L K S S + + F ++ K G +Q DA EF ++++++H
Sbjct: 196 VHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIH 255
Query: 173 E 173
+
Sbjct: 256 Q 256
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGE 116
++ G+ GL N G+TCF+++ILQCL H + + + + R+
Sbjct: 131 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKI 190
Query: 117 VTEQLAVL-LKSIWSCSYNPDISNQFKVIID---KYGTQYRGNNQHDAQEFLMWLLDKVH 172
V E L K S S + + F ++ K G +Q DA EF ++++++H
Sbjct: 191 VHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIH 250
Query: 173 E 173
+
Sbjct: 251 Q 251
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGE 116
++ G+ GL N G+TCF+++ILQCL H + + + + R+
Sbjct: 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKI 195
Query: 117 VTEQLAVL-LKSIWSCSYNPDISNQFKVIID---KYGTQYRGNNQHDAQEFLMWLLDKVH 172
V E L K S S + + F ++ K G +Q DA EF ++++++H
Sbjct: 196 VHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIH 255
Query: 173 E 173
+
Sbjct: 256 Q 256
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 61 GVIGLRNHGNTCFINAILQCLSHTDIL 87
G +GL+N G TC++N++LQ L T+ L
Sbjct: 174 GYVGLKNQGATCYMNSLLQTLFFTNQL 200
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
Length = 353
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 61 GVIGLRNHGNTCFINAILQCLSHTDIL 87
G +GL+N G TC++N++LQ L T+ L
Sbjct: 5 GYVGLKNQGATCYMNSLLQTLFFTNQL 31
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal
Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At
1.74 A Resolution
Length = 415
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 63 IGLRNHGNTCFINAILQCL 81
+G +N GNTC++NA LQ L
Sbjct: 25 VGFKNXGNTCYLNATLQAL 43
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 61 GVIGLRNHGNTCFINAILQCLSHTDIL 87
G +GL+N G TC+ N++LQ L T+ L
Sbjct: 5 GYVGLKNQGATCYXNSLLQTLFFTNQL 31
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKG 115
GL N GNTC++NA +QC+ L + L +Y + + S +Y T
Sbjct: 16 GLTNLGNTCYMNATVQCIRSVPELKD--ALKRYAGALRASGEMASAQYITAA 65
>pdb|1QKQ|A Chain A, Charcot-Leyden Crystal Protein - Mannose Complex
pdb|1G86|A Chain A, Charcot-Leyden Crystal ProteinN-Ethylmaleimide Complex
pdb|1LCL|A Chain A, Charcot-Leyden Crystal Protein
Length = 142
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 46 LPPKPLLFANGDKVPGVIGLRNHGNTCFIN-AILQCLSHTDILAEYFVLDQYKIDMSRRN 104
L P P A + ++ CF+N LQ HT++ E ++ +++ RR
Sbjct: 3 LLPVPYTEAASLSTGSTVTIKGRPLVCFLNEPYLQVDFHTEMKEESDIVFHFQVCFGRRV 62
Query: 105 KFNSKKYGTKGEVTE 119
NS++YG + E
Sbjct: 63 VMNSREYGAWKQQVE 77
>pdb|1HDK|A Chain A, Charcot-Leyden Crystal Protein- Pcmbs Complex
Length = 141
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 46 LPPKPLLFANGDKVPGVIGLRNHGNTCFIN-AILQCLSHTDILAEYFVLDQYKIDMSRRN 104
L P P A + ++ CF+N LQ HT++ E ++ +++ RR
Sbjct: 2 LLPVPYTEAASLSTGSTVTIKGRPLVCFLNEPYLQVDFHTEMKEESDIVFHFQVCFGRRV 61
Query: 105 KFNSKKYGT 113
NS++YG
Sbjct: 62 VMNSREYGA 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,537,076
Number of Sequences: 62578
Number of extensions: 212999
Number of successful extensions: 447
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 25
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)