Query psy5641
Match_columns 192
No_of_seqs 233 out of 1303
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 22:49:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02669 Peptidase_C19M A subfa 100.0 3.3E-32 7.1E-37 235.6 13.5 146 23-178 64-228 (440)
2 COG5560 UBP12 Ubiquitin C-term 100.0 2.8E-29 6.1E-34 216.6 9.4 122 60-186 263-384 (823)
3 cd02658 Peptidase_C19B A subfa 99.9 2.2E-25 4.7E-30 184.9 10.2 105 64-176 1-119 (311)
4 cd02660 Peptidase_C19D A subfa 99.9 1.5E-24 3.4E-29 180.8 11.0 109 63-179 1-110 (328)
5 cd02671 Peptidase_C19O A subfa 99.9 8.6E-24 1.9E-28 177.1 12.9 118 46-177 5-125 (332)
6 cd02657 Peptidase_C19A A subfa 99.9 8.7E-24 1.9E-28 174.8 11.3 104 64-177 1-110 (305)
7 cd02661 Peptidase_C19E A subfa 99.9 1.3E-23 2.8E-28 173.0 10.8 107 62-178 1-107 (304)
8 cd02668 Peptidase_C19L A subfa 99.9 2E-23 4.2E-28 174.4 11.4 108 64-177 1-108 (324)
9 cd02666 Peptidase_C19J A subfa 99.9 3E-23 6.5E-28 174.2 10.2 110 62-179 1-120 (343)
10 KOG2026|consensus 99.9 3.4E-23 7.4E-28 170.4 9.2 144 25-181 80-243 (442)
11 cd02663 Peptidase_C19G A subfa 99.9 4.2E-23 9.2E-28 170.7 9.1 86 64-180 1-88 (300)
12 PF00443 UCH: Ubiquitin carbox 99.9 1.5E-22 3.2E-27 162.1 9.2 113 62-179 1-115 (269)
13 COG5533 UBP5 Ubiquitin C-termi 99.9 2.2E-22 4.7E-27 162.0 9.5 116 61-181 70-186 (415)
14 KOG1865|consensus 99.9 5.9E-22 1.3E-26 170.0 9.8 105 62-176 108-212 (545)
15 cd02659 peptidase_C19C A subfa 99.9 3.8E-22 8.1E-27 166.8 8.5 106 61-177 1-106 (334)
16 cd02664 Peptidase_C19H A subfa 99.9 1.4E-21 3.1E-26 163.4 10.1 99 64-176 1-100 (327)
17 KOG0944|consensus 99.9 7E-22 1.5E-26 172.0 8.2 113 57-177 302-424 (763)
18 cd02667 Peptidase_C19K A subfa 99.8 3E-21 6.6E-26 158.1 7.2 70 64-176 1-70 (279)
19 KOG1873|consensus 99.8 3.2E-19 7E-24 157.0 10.8 123 58-181 201-330 (877)
20 KOG1868|consensus 99.8 6.1E-19 1.3E-23 156.8 9.1 118 57-180 296-414 (653)
21 COG5207 UBP14 Isopeptidase T [ 99.7 4.8E-18 1E-22 144.6 6.8 112 58-177 298-414 (749)
22 cd02662 Peptidase_C19F A subfa 99.7 1.2E-17 2.6E-22 134.1 5.5 53 64-176 1-53 (240)
23 KOG1870|consensus 99.7 2.8E-17 6E-22 151.8 7.4 127 56-187 240-366 (842)
24 KOG1863|consensus 99.7 9.9E-17 2.1E-21 151.5 8.6 113 55-179 162-275 (1093)
25 COG5077 Ubiquitin carboxyl-ter 99.6 7.9E-16 1.7E-20 136.1 6.6 107 55-176 186-292 (1089)
26 KOG1867|consensus 99.6 2E-15 4.3E-20 131.7 6.7 109 58-175 157-266 (492)
27 KOG1866|consensus 99.5 5.4E-14 1.2E-18 124.3 7.4 115 57-179 90-204 (944)
28 PF13423 UCH_1: Ubiquitin carb 99.3 4E-12 8.6E-17 105.0 8.4 104 63-180 1-105 (295)
29 cd02673 Peptidase_C19Q A subfa 99.2 9.1E-12 2E-16 100.4 4.7 30 149-178 25-54 (245)
30 KOG1871|consensus 99.2 2.3E-11 5E-16 101.2 6.0 117 61-187 27-174 (420)
31 KOG1872|consensus 99.0 6.1E-11 1.3E-15 100.9 1.8 112 60-180 103-220 (473)
32 cd02672 Peptidase_C19P A subfa 98.7 4.4E-08 9.5E-13 80.0 7.8 54 59-125 12-65 (268)
33 cd02674 Peptidase_C19R A subfa 98.1 1.4E-06 3.1E-11 68.9 1.5 20 64-83 1-20 (230)
34 KOG1864|consensus 97.9 2.9E-05 6.2E-10 69.7 7.6 112 65-177 34-154 (587)
35 cd02257 Peptidase_C19 Peptidas 97.9 5.4E-06 1.2E-10 64.9 1.5 20 64-83 1-20 (255)
36 KOG4598|consensus 97.9 1.3E-05 2.9E-10 71.8 3.9 80 58-176 83-162 (1203)
37 KOG1864|consensus 97.8 3.5E-05 7.7E-10 69.1 5.5 111 60-179 230-344 (587)
38 cd02665 Peptidase_C19I A subfa 96.9 0.00052 1.1E-08 54.8 1.7 22 64-85 1-22 (228)
39 KOG1275|consensus 96.2 0.012 2.6E-07 54.8 6.3 72 60-146 497-568 (1118)
40 PF05408 Peptidase_C28: Foot-a 94.2 0.029 6.2E-07 42.9 1.9 24 60-83 31-54 (193)
41 PF08715 Viral_protease: Papai 84.3 2.7 5.9E-05 35.3 5.6 80 59-173 99-179 (320)
42 KOG1871|consensus 64.9 3.5 7.6E-05 35.4 1.3 31 61-91 177-207 (420)
43 cd02670 Peptidase_C19N A subfa 61.7 4.3 9.3E-05 32.7 1.2 20 64-83 1-21 (241)
44 PF00123 Hormone_2: Peptide ho 34.9 23 0.00049 18.5 1.0 10 160-169 19-28 (28)
45 KOG3556|consensus 34.3 66 0.0014 29.1 4.2 25 62-86 368-392 (724)
46 KOG1867|consensus 27.1 23 0.0005 31.7 0.3 28 61-88 76-103 (492)
47 KOG1868|consensus 27.0 21 0.00045 33.1 -0.1 16 65-80 205-220 (653)
48 PF14855 PapJ: Pilus-assembly 23.9 30 0.00065 26.2 0.3 15 66-80 11-25 (187)
49 KOG1491|consensus 23.4 40 0.00087 28.9 1.0 21 59-79 22-42 (391)
50 cd01857 HSR1_MMR1 HSR1/MMR1. 23.2 46 0.001 23.8 1.2 19 60-78 86-104 (141)
51 COG0012 Predicted GTPase, prob 20.9 47 0.001 28.6 1.0 21 60-80 5-25 (372)
No 1
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=3.3e-32 Score=235.63 Aligned_cols=146 Identities=27% Similarity=0.472 Sum_probs=119.5
Q ss_pred cccceecCCCcccccCCCCCccc-CCCCccc--------------c-CCCCCCCCccccccCCchhhHHHHHHHHhCCHH
Q psy5641 23 DHSMSCRRQAYGLVSLSSNDIRV-LPPKPLL--------------F-ANGDKVPGVIGLRNHGNTCFINAILQCLSHTDI 86 (192)
Q Consensus 23 ~~~~~~lp~~~e~~~~~l~di~~-~~p~~~~--------------~-~~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~ 86 (192)
...+||+|+|+++.|++|+||+. ..|+++. . .+..+.+|++||.|+|||||||||||+|+|+|+
T Consensus 64 t~~~yc~~~~~~v~d~~l~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~ 143 (440)
T cd02669 64 TLKFYCLPDNYEIIDSSLDDIKYVLNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKP 143 (440)
T ss_pred CCCEEEeCCCCEEeCccHHHHHHHhcCCCCHHHHHHhhhccccccccCCCCccCCccCccCCCCchHHHHHHHHHHCCHH
Confidence 34479999999999999999994 4665441 1 123577899999999999999999999999999
Q ss_pred HHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCC--CCCCChHHHHHHHHHh-cCCCCCCCCCCHHHH
Q psy5641 87 LAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCS--YNPDISNQFKVIIDKY-GTQYRGNNQHDAQEF 163 (192)
Q Consensus 87 fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~~~p~~~~~~~~~~-~~~f~~~~QqDA~EF 163 (192)
||++|+........ .....++..+|+.+++++|++. ...++|.+|+.+++.. .+.|.+++|||||||
T Consensus 144 lr~~~l~~~~~~~~----------~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EF 213 (440)
T cd02669 144 IRNFFLLYENYENI----------KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEF 213 (440)
T ss_pred HHHHHhhccccccc----------cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHH
Confidence 99999975432111 0134579999999999999875 3678899999999765 457999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy5641 164 LMWLLDKVHEDLNTA 178 (192)
Q Consensus 164 l~~LL~~L~~~l~~~ 178 (192)
|.||||.||+++...
T Consensus 214 l~~LLd~L~~~l~~~ 228 (440)
T cd02669 214 LSWLLNTLHKDLGGS 228 (440)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999854
No 2
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-29 Score=216.62 Aligned_cols=122 Identities=39% Similarity=0.713 Sum_probs=114.9
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChH
Q psy5641 60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISN 139 (192)
Q Consensus 60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~ 139 (192)
.|.+||+|+||||||||.||||.|++.+|+||++..|..++++.|+. +..+.++.+++.|++.+..++..++.|.
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Npl-----gmhg~vAsayadLik~ly~~~~haf~Ps 337 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPL-----GMHGSVASAYADLIKQLYDGNLHAFTPS 337 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCcc-----chhhhHHHHHHHHHHHHhCccccccChH
Confidence 48899999999999999999999999999999999999999886654 7888999999999999999988999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCcccc
Q psy5641 140 QFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTI 186 (192)
Q Consensus 140 ~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k~~~~~ 186 (192)
.|+..++.++..|.|+.|||.+||+.+|||.||++++++.+|+|.+-
T Consensus 338 ~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~Kpytsk 384 (823)
T COG5560 338 GFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSK 384 (823)
T ss_pred HHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCC
Confidence 99999999999999999999999999999999999999999998653
No 3
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=2.2e-25 Score=184.86 Aligned_cols=105 Identities=29% Similarity=0.386 Sum_probs=87.3
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC----------
Q psy5641 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY---------- 133 (192)
Q Consensus 64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~---------- 133 (192)
||.|+||||||||+||+|+++|+||++++........ .......++.++|++++..|++.+.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~--------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 72 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPS--------DVVDPANDLNCQLIKLADGLLSGRYSKPASLKSEN 72 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCC--------CcCCccccHHHHHHHHHHHhcCCCcCCCccccccc
Confidence 8999999999999999999999999999762211100 0112346799999999999988643
Q ss_pred ----CCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641 134 ----NPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176 (192)
Q Consensus 134 ----~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~ 176 (192)
.++.|..|+.+++...+.|..++|||||||+.+||+.|++++.
T Consensus 73 ~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~ 119 (311)
T cd02658 73 DPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESF 119 (311)
T ss_pred cccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhc
Confidence 2568999999999999999999999999999999999999985
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=1.5e-24 Score=180.83 Aligned_cols=109 Identities=27% Similarity=0.428 Sum_probs=90.5
Q ss_pred cccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcC-CCCCCChHHH
Q psy5641 63 IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSC-SYNPDISNQF 141 (192)
Q Consensus 63 ~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~~~~~p~~~ 141 (192)
+||.|+||||||||+||+|+|+|+||++++...+..... ......++.++|++++..||.. ...++.|..|
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~--------~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 72 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCL--------SCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINL 72 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccc--------cCCccccHHHHHHHHHHHHhcCCCCCCcCHHHH
Confidence 699999999999999999999999999998754322100 1123457999999999999544 4557789999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641 142 KVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179 (192)
Q Consensus 142 ~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~ 179 (192)
+..++...+.|.+++|||||||+.+|||.||+++....
T Consensus 73 l~~~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~ 110 (328)
T cd02660 73 LYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDK 110 (328)
T ss_pred HHHHHhhchhhcccccccHHHHHHHHHHHHHHHhhccc
Confidence 99998888899999999999999999999999987654
No 5
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=8.6e-24 Score=177.08 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=87.4
Q ss_pred CCCCccccCC---CCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHH
Q psy5641 46 LPPKPLLFAN---GDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLA 122 (192)
Q Consensus 46 ~~p~~~~~~~---~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 122 (192)
+.|++..... .+...|++||.|+||||||||+||+|+|+|+||++++..... .....-...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~--------------~~~~~~~q~~~ 70 (332)
T cd02671 5 PAPQPSSATSCEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSL--------------ISSVEQLQSSF 70 (332)
T ss_pred CCCCCcCCccccccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcc--------------cCcHHHHHHHH
Confidence 3455444433 356789999999999999999999999999999988633200 00011122233
Q ss_pred HHHHHHHcCCCCCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641 123 VLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177 (192)
Q Consensus 123 ~l~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~ 177 (192)
.++..++........|..|+.++++.++.|.+++||||||||.+|||.|++.+..
T Consensus 71 ~~l~~~~~~~~~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~~i~~ 125 (332)
T cd02671 71 LLNPEKYNDELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQELVEK 125 (332)
T ss_pred HHHHHHHhhcccccCHHHHHHHHHHhccccCCccccCHHHHHHHHHHHHHHHHHh
Confidence 4455666654445569999999999999999999999999999999999976654
No 6
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.90 E-value=8.7e-24 Score=174.76 Aligned_cols=104 Identities=26% Similarity=0.338 Sum_probs=87.1
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHHHH
Q psy5641 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKV 143 (192)
Q Consensus 64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~~~ 143 (192)
||.|+||||||||+||+|+++|+||++++....... .......++..+|++|+..|+.+. ..+.|..|+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~---------~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~ 70 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR---------GANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQ 70 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc---------ccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHH
Confidence 899999999999999999999999999986543211 011234679999999999999864 3788999999
Q ss_pred HHHHhcCCCC------CCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641 144 IIDKYGTQYR------GNNQHDAQEFLMWLLDKVHEDLNT 177 (192)
Q Consensus 144 ~~~~~~~~f~------~~~QqDA~EFl~~LL~~L~~~l~~ 177 (192)
.+++..+.|. +++||||+||+.+||+.|++++..
T Consensus 71 ~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~ 110 (305)
T cd02657 71 LLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPG 110 (305)
T ss_pred HHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcc
Confidence 9998888884 459999999999999999999864
No 7
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.90 E-value=1.3e-23 Score=172.96 Aligned_cols=107 Identities=30% Similarity=0.440 Sum_probs=90.9
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHH
Q psy5641 62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQF 141 (192)
Q Consensus 62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~ 141 (192)
++||.|+||||||||+||+|+|+|+||++++...+..... ....++.++|+.++..++..+.....|..|
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 70 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC----------NEGFCMMCALEAHVERALASSGPGSAPRIF 70 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc----------CCcchHHHHHHHHHHHHHhCCCCccChHHH
Confidence 4899999999999999999999999999998654332111 133568899999999998877777889999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q psy5641 142 KVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTA 178 (192)
Q Consensus 142 ~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~ 178 (192)
..++....+.|..+.||||+||+.+|||.|++++...
T Consensus 71 ~~~l~~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~ 107 (304)
T cd02661 71 SSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDR 107 (304)
T ss_pred HHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhh
Confidence 9999988899999999999999999999999886543
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.90 E-value=2e-23 Score=174.39 Aligned_cols=108 Identities=21% Similarity=0.233 Sum_probs=85.3
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHHHH
Q psy5641 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKV 143 (192)
Q Consensus 64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~~~ 143 (192)
||.|+||||||||+||+|+|+|+||++++...........+... .......++..+|+.|+..||.+....+.|..|..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~ 79 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPP-DKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVK 79 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccc-cCCcccchHHHHHHHHHHHHHhCCCceEChHHHHH
Confidence 89999999999999999999999999998654322111111000 00012357899999999999998888889999998
Q ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641 144 IIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177 (192)
Q Consensus 144 ~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~ 177 (192)
++ .|..++||||+||+.+|||.||+++..
T Consensus 80 ~l-----~~~~~~QqDa~EFl~~lLd~L~~~l~~ 108 (324)
T cd02668 80 AL-----GLDTGQQQDAQEFSKLFLSLLEAKLSK 108 (324)
T ss_pred Hh-----CCCCccccCHHHHHHHHHHHHHHHHhh
Confidence 87 367889999999999999999999874
No 9
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.89 E-value=3e-23 Score=174.18 Aligned_cols=110 Identities=16% Similarity=0.233 Sum_probs=82.9
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhh-----hhcccccCCCC-----CCCcchHHHHHHHHHHHHHcC
Q psy5641 62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKID-----MSRRNKFNSKK-----YGTKGEVTEQLAVLLKSIWSC 131 (192)
Q Consensus 62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~-----~~~~~~~~~~~-----~~~~~~l~~~l~~l~~~l~~~ 131 (192)
++||.|+||||||||+||+|+++|+||++++....... ........... ......++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999986431100 00000000000 001225889999999999998
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641 132 SYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179 (192)
Q Consensus 132 ~~~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~ 179 (192)
....+.|..++..+. ..||||+||+..||+.||.+++...
T Consensus 81 ~~~~v~P~~~l~~l~--------~~QQDa~Ef~~~lld~Le~~lk~~~ 120 (343)
T cd02666 81 NTRSVTPSKELAYLA--------LRQQDVTECIDNVLFQLEVALEPIS 120 (343)
T ss_pred CCCccCcHHHHHhcc--------ccccchHHHHHHHHHHHHHHhcCcc
Confidence 888999999887653 2999999999999999999997544
No 10
>KOG2026|consensus
Probab=99.89 E-value=3.4e-23 Score=170.42 Aligned_cols=144 Identities=28% Similarity=0.458 Sum_probs=120.9
Q ss_pred cceecCCCcccccCCCCCccc-CCCCccc---------------c-CCCCCCCCccccccCCchhhHHHHHHHHhCCHHH
Q psy5641 25 SMSCRRQAYGLVSLSSNDIRV-LPPKPLL---------------F-ANGDKVPGVIGLRNHGNTCFINAILQCLSHTDIL 87 (192)
Q Consensus 25 ~~~~lp~~~e~~~~~l~di~~-~~p~~~~---------------~-~~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~f 87 (192)
.|||+|++|++.|++++||++ +.|+.+. . ....|.+|++||.|+.++.|.|+++|+|++.+++
T Consensus 80 kfyvlpe~~ei~d~s~~~ikhslkptftr~~cp~lD~~nr~~~raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~Pl 159 (442)
T KOG2026|consen 80 KFYVLPENYEIDDPSLGDIKHSLKPTFTKTDCPNLDKVNRKLSRALDGSTYLPGFVGLNNIKANDYANAVLQALSHVVPL 159 (442)
T ss_pred eEEecchhccccCchhhhhhccccceeehhhcccccccchhhhhhhcCCcceeeeeccchhhhHHHHHHHHHHHhccchh
Confidence 389999999999999999994 5776432 1 1246899999999999999999999999999999
Q ss_pred HHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC--CCCChHHHHHHHH-HhcCCCCCCCCCCHHHHH
Q psy5641 88 AEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY--NPDISNQFKVIID-KYGTQYRGNNQHDAQEFL 164 (192)
Q Consensus 88 r~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~--~~~~p~~~~~~~~-~~~~~f~~~~QqDA~EFl 164 (192)
|+|++.... ..+....+...|+.+++++|+++. ..++|.++.+++. .+.++|..++|.|+.|||
T Consensus 160 RnyFl~~~n-------------~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~DpveFl 226 (442)
T KOG2026|consen 160 RNYFLLEEN-------------YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFL 226 (442)
T ss_pred hhhhccccc-------------ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHHHH
Confidence 999986632 113456799999999999999873 4568999999885 455679999999999999
Q ss_pred HHHHHHHHHHHhhhcCC
Q psy5641 165 MWLLDKVHEDLNTATKK 181 (192)
Q Consensus 165 ~~LL~~L~~~l~~~~~k 181 (192)
.||||.||.+++...+.
T Consensus 227 swllntlhs~l~~~k~~ 243 (442)
T KOG2026|consen 227 SWLLNTLHSDLRGSKKA 243 (442)
T ss_pred HHHHHHHHHHhCCCCCc
Confidence 99999999999976633
No 11
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.89 E-value=4.2e-23 Score=170.65 Aligned_cols=86 Identities=30% Similarity=0.454 Sum_probs=76.8
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC--CCCChHHH
Q psy5641 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY--NPDISNQF 141 (192)
Q Consensus 64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~--~~~~p~~~ 141 (192)
||.|+||||||||+||+|+| .++..+|+.+|+.||.+.. ..++|..|
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f 49 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------------ENLLTCLKDLFESISEQKKRTGVISPKKF 49 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHH
Confidence 89999999999999999987 1277889999999998743 45789999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcC
Q psy5641 142 KVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK 180 (192)
Q Consensus 142 ~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~ 180 (192)
+.+++...+.|.+++||||||||.+|||.||+++....+
T Consensus 50 ~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~ 88 (300)
T cd02663 50 ITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERK 88 (300)
T ss_pred HHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999986543
No 12
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.88 E-value=1.5e-22 Score=162.11 Aligned_cols=113 Identities=31% Similarity=0.541 Sum_probs=91.9
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcC--CCCCCChH
Q psy5641 62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSC--SYNPDISN 139 (192)
Q Consensus 62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~--~~~~~~p~ 139 (192)
++||.|.||||||||+||+|+++|+||++++............ .......+..+++.++..||.. ....+.|.
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~ 75 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESN-----PSKKIKEFLQQLQNLFRSLWSSNSSDSSISPS 75 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSS-----TTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhcccc-----ccccccchhhhhhhhhhhhhhhcccccceeec
Confidence 4899999999999999999999999999998652222111111 1123456999999999999998 55677899
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641 140 QFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179 (192)
Q Consensus 140 ~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~ 179 (192)
.|..+++...+.|..++||||+||+..||+.|++++....
T Consensus 76 ~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~ 115 (269)
T PF00443_consen 76 DFINALSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSF 115 (269)
T ss_dssp HHHHHHHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCS
T ss_pred cccccccccccccccccccchhhhhcccccccchhhcccc
Confidence 9999999988889999999999999999999999987643
No 13
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.2e-22 Score=162.02 Aligned_cols=116 Identities=30% Similarity=0.452 Sum_probs=93.4
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcc-hHHHHHHHHHHHHHcCCCCCCChH
Q psy5641 61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKG-EVTEQLAVLLKSIWSCSYNPDISN 139 (192)
Q Consensus 61 g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~l~~~l~~~~~~~~~p~ 139 (192)
-++||+|+|||||||++||||+.+..+...|+...|...++.+++. +..+ .....|..+...+-......+.|.
T Consensus 70 ~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~pr-----g~~g~~~~k~F~~l~~~~~~Hg~~sis~~ 144 (415)
T COG5533 70 PPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPR-----GKPGSNAFKQFIALYETPGCHGPKSISPR 144 (415)
T ss_pred CCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCC-----CCcchhHHHHHHHHHhccccCCCcccchH
Confidence 4699999999999999999999999999866655565555554432 3444 344556666666655556778999
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy5641 140 QFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKK 181 (192)
Q Consensus 140 ~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k 181 (192)
.|+..++..++.|++..|||+|||+.++||.||++++....+
T Consensus 145 nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Sr 186 (415)
T COG5533 145 NFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSR 186 (415)
T ss_pred HHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCccc
Confidence 999999999999999999999999999999999999875544
No 14
>KOG1865|consensus
Probab=99.87 E-value=5.9e-22 Score=170.04 Aligned_cols=105 Identities=26% Similarity=0.370 Sum_probs=94.8
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHH
Q psy5641 62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQF 141 (192)
Q Consensus 62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~ 141 (192)
.+||.|+|||||+|||||||.++|||.+||+...+...+.+ ...++.++|+..+..-......++.|..|
T Consensus 108 ~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~----------~~~C~lc~~q~hi~~A~~~~g~pisP~~i 177 (545)
T KOG1865|consen 108 GAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHR----------AKFCMLCTFQAHITRALHNPGHPISPSQI 177 (545)
T ss_pred CcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccc----------cCeeeehHHHHHHHHHhcCCCCccChHHH
Confidence 49999999999999999999999999999999888766543 34679999999888887777779999999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641 142 KVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176 (192)
Q Consensus 142 ~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~ 176 (192)
+..+..+...|..+.|+||||||++++|.|+.-.-
T Consensus 178 ~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL 212 (545)
T KOG1865|consen 178 LSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL 212 (545)
T ss_pred HHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999998764
No 15
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.87 E-value=3.8e-22 Score=166.85 Aligned_cols=106 Identities=25% Similarity=0.247 Sum_probs=80.7
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHH
Q psy5641 61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQ 140 (192)
Q Consensus 61 g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~ 140 (192)
|++||.|+||||||||+||+|+++|+||++++...... ......++..+|+.++..|+........|..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~-----------~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~ 69 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE-----------DDDDNKSVPLALQRLFLFLQLSESPVKTTEL 69 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc-----------cCcccccHHHHHHHHHHHHHhCCccccCcch
Confidence 79999999999999999999999999999998641000 0013456889999999999987654444444
Q ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641 141 FKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177 (192)
Q Consensus 141 ~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~ 177 (192)
+..........|..++||||+||+.+||+.|++++..
T Consensus 70 ~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~ 106 (334)
T cd02659 70 TDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKG 106 (334)
T ss_pred hheeccCCCCCCCcccchhHHHHHHHHHHHHHHHhcc
Confidence 4311111234578899999999999999999988863
No 16
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.86 E-value=1.4e-21 Score=163.42 Aligned_cols=99 Identities=24% Similarity=0.382 Sum_probs=77.8
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHH-HH
Q psy5641 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQ-FK 142 (192)
Q Consensus 64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~-~~ 142 (192)
||.|+||||||||+||+|+++|+||++++....... .....+..+|+.++..|......+..|.. |+
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l 68 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFL 68 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHH
Confidence 899999999999999999999999999986543210 12345778899999888766556666665 66
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641 143 VIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176 (192)
Q Consensus 143 ~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~ 176 (192)
...+ .+.|..++|||||||+.+||+.|+..+.
T Consensus 69 ~~~~--~~~f~~~~QqDa~EFl~~lLd~l~~~i~ 100 (327)
T cd02664 69 EASR--PPWFTPGSQQDCSEYLRYLLDRLHTLIE 100 (327)
T ss_pred HHhc--ccccCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 5543 4679999999999999999999985443
No 17
>KOG0944|consensus
Probab=99.86 E-value=7e-22 Score=172.00 Aligned_cols=113 Identities=32% Similarity=0.477 Sum_probs=94.2
Q ss_pred CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCC--
Q psy5641 57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYN-- 134 (192)
Q Consensus 57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~-- 134 (192)
-..||++||+|+||+||||||+|+|+.+|.|...++.. .... +.....+..+|.+++.+|...|.++++.
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~-~~~f-------~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p 373 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ-ERIF-------NCYPKDPTNDFNCQLAKLLHGMLSGKYSKP 373 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccc-ccee-------ecCCCCcchhHHHHHHHHHHHhhcCcccCc
Confidence 36789999999999999999999999999999888755 1111 1112235678999999999999998753
Q ss_pred --------CCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641 135 --------PDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177 (192)
Q Consensus 135 --------~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~ 177 (192)
.+.|..|+..+++..+.|+..+||||+|||++||+.|.+....
T Consensus 374 ~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs 424 (763)
T KOG0944|consen 374 LMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRS 424 (763)
T ss_pred cCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccc
Confidence 3579999999999999999999999999999999999876543
No 18
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.84 E-value=3e-21 Score=158.11 Aligned_cols=70 Identities=36% Similarity=0.592 Sum_probs=62.9
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHHHH
Q psy5641 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKV 143 (192)
Q Consensus 64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~~~ 143 (192)
||.|+||||||||+||+|+|+|+||++++. .|..|+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------------~P~~~~~ 37 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------TPKELFS 37 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------------CHHHHHH
Confidence 899999999999999999999999999873 4677777
Q ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641 144 IIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176 (192)
Q Consensus 144 ~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~ 176 (192)
.++...+.|.+++||||+||+.+|||.|+..+.
T Consensus 38 ~l~~~~~~f~~~~QqDA~Efl~~lld~l~~~i~ 70 (279)
T cd02667 38 QVCRKAPQFKGYQQQDSHELLRYLLDGLRTFID 70 (279)
T ss_pred HHHHhhHhhcCCchhhHHHHHHHHHHHHHHhhh
Confidence 887778889999999999999999999985554
No 19
>KOG1873|consensus
Probab=99.80 E-value=3.2e-19 Score=156.99 Aligned_cols=123 Identities=27% Similarity=0.302 Sum_probs=93.7
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhh---hcccccC----CCCCCCcchHHHHHHHHHHHHHc
Q psy5641 58 KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDM---SRRNKFN----SKKYGTKGEVTEQLAVLLKSIWS 130 (192)
Q Consensus 58 ~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~---~~~~~~~----~~~~~~~~~l~~~l~~l~~~l~~ 130 (192)
+...++||.|+|||||+|||+|.|+.+|.+|+.|....+.... ....... .......++++.+|+. +..|..
T Consensus 201 ~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e 279 (877)
T KOG1873|consen 201 RGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSE 279 (877)
T ss_pred ccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhh
Confidence 3445799999999999999999999999999999755543211 0000000 0112345678888888 666777
Q ss_pred CCCCCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy5641 131 CSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKK 181 (192)
Q Consensus 131 ~~~~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k 181 (192)
+....+.|+.|...+....|+|.++.||||||+|++|||.|..|-.+..++
T Consensus 280 ~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk 330 (877)
T KOG1873|consen 280 TTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKK 330 (877)
T ss_pred ccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHH
Confidence 777888999999999999999999999999999999999998765544433
No 20
>KOG1868|consensus
Probab=99.78 E-value=6.1e-19 Score=156.82 Aligned_cols=118 Identities=36% Similarity=0.611 Sum_probs=100.6
Q ss_pred CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcC-CCCC
Q psy5641 57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSC-SYNP 135 (192)
Q Consensus 57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~~~ 135 (192)
....|.+||.|+|||||||++||||+.++.||+.++...+...+.... ......+..+...++.++|.. ....
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~------~~~~~~l~~~~~~~l~~~~~~~~~~s 369 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDL------FFGAEELESACAKLLQKLWHGHGQFS 369 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCC------cccchhHHHHHHHhhhhhccCCCcee
Confidence 455688999999999999999999999999999999888776665111 123456888888888888876 5667
Q ss_pred CChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcC
Q psy5641 136 DISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK 180 (192)
Q Consensus 136 ~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~ 180 (192)
+.|..|+..+.+..+.|.++.||||+||+.++++.||++++....
T Consensus 370 ~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~ 414 (653)
T KOG1868|consen 370 VLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTR 414 (653)
T ss_pred cCcHHHHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCC
Confidence 889999999999999999999999999999999999999998654
No 21
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.8e-18 Score=144.62 Aligned_cols=112 Identities=28% Similarity=0.353 Sum_probs=88.0
Q ss_pred CCCC-ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC---
Q psy5641 58 KVPG-VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY--- 133 (192)
Q Consensus 58 ~~~g-~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~--- 133 (192)
..+| .+||.|+||+||++||+|.|+....+...+..-.....+.- ..+..++.+++.+|+.+|.....
T Consensus 298 ~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~--------~~P~~~l~CQl~kll~~mk~~p~~~y 369 (749)
T COG5207 298 SVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYM--------KNPLECLFCQLMKLLSKMKETPDNEY 369 (749)
T ss_pred cCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeee--------cCCchhHHHHHHHHHhhccCCCCccc
Confidence 4556 89999999999999999999998877666543222111111 12456799999999999987652
Q ss_pred -CCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641 134 -NPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177 (192)
Q Consensus 134 -~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~ 177 (192)
..+.|..|+..++...+.|..++||||+|||.+||+.|.+....
T Consensus 370 ~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S 414 (749)
T COG5207 370 VNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS 414 (749)
T ss_pred cCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccch
Confidence 34679999999999999999999999999999999999875543
No 22
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.70 E-value=1.2e-17 Score=134.13 Aligned_cols=53 Identities=42% Similarity=0.624 Sum_probs=47.6
Q ss_pred ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHHHH
Q psy5641 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKV 143 (192)
Q Consensus 64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~~~ 143 (192)
||+|+||||||||+||+|+|+|+||++++...
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999876210
Q ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641 144 IIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176 (192)
Q Consensus 144 ~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~ 176 (192)
+|||||||+.+||+.|+..+.
T Consensus 33 ------------~QqDa~EFl~~ll~~l~~~i~ 53 (240)
T cd02662 33 ------------EQQDAHELFQVLLETLEQLLK 53 (240)
T ss_pred ------------hhcCHHHHHHHHHHHHHHhcc
Confidence 999999999999999996653
No 23
>KOG1870|consensus
Probab=99.69 E-value=2.8e-17 Score=151.82 Aligned_cols=127 Identities=39% Similarity=0.691 Sum_probs=112.7
Q ss_pred CCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q psy5641 56 GDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNP 135 (192)
Q Consensus 56 ~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~ 135 (192)
....+|.+||.|+|||||||+.+|+|.+.++++++++...+..+++..++ .+..+.+...+..++..+|.+....
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~-----~~~~~~~~~~~~~l~~~~~s~~~~~ 314 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNP-----LGSAGEVASSFADLIKQLWSGNKSA 314 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCC-----CcccceechhhhhHHHHhccCCccc
Confidence 34567999999999999999999999999999999998877765655444 3567789999999999999998777
Q ss_pred CChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCccccc
Q psy5641 136 DISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIK 187 (192)
Q Consensus 136 ~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k~~~~~k 187 (192)
+.|..++..+....+.|.++.|||.+||+.+++|.+|++++...+++|.+.+
T Consensus 315 v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~ 366 (842)
T KOG1870|consen 315 VAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGK 366 (842)
T ss_pred cCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCccccc
Confidence 8899999999999999999999999999999999999999999999776654
No 24
>KOG1863|consensus
Probab=99.67 E-value=9.9e-17 Score=151.53 Aligned_cols=113 Identities=20% Similarity=0.255 Sum_probs=93.7
Q ss_pred CCCCCCCc-cccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC
Q psy5641 55 NGDKVPGV-IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY 133 (192)
Q Consensus 55 ~~~~~~g~-~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~ 133 (192)
+.+..+|+ +||.|+||||||||+||+|+.++.||+.+........ ..++...+..+|+.+|..|..++.
T Consensus 162 d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~----------~~~~~~~v~~~lq~lF~~LQ~s~~ 231 (1093)
T KOG1863|consen 162 DSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTG----------HEDPRRSIPLALQRLFYELQMSKR 231 (1093)
T ss_pred hhhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCC----------cccccchHHHHHHHHHHHHhhcCC
Confidence 45677888 9999999999999999999999999999985542010 112344588999999999999999
Q ss_pred CCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641 134 NPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179 (192)
Q Consensus 134 ~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~ 179 (192)
+++.+.++...+++.. ...++|||++||++.|+|.|++.+....
T Consensus 232 k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~ 275 (1093)
T KOG1863|consen 232 KYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK 275 (1093)
T ss_pred CCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh
Confidence 9999999999887654 5568999999999999999998877544
No 25
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.9e-16 Score=136.12 Aligned_cols=107 Identities=24% Similarity=0.289 Sum_probs=85.8
Q ss_pred CCCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCC
Q psy5641 55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYN 134 (192)
Q Consensus 55 ~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 134 (192)
+++...|++||+|.|+||||||.||+|+.+..||+.+...... + ......++.+|+++|..|..+ ..
T Consensus 186 nSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd------~------p~grdSValaLQr~Fynlq~~-~~ 252 (1089)
T COG5077 186 NSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTD------H------PRGRDSVALALQRLFYNLQTG-EE 252 (1089)
T ss_pred ccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCC------C------CCccchHHHHHHHHHHHHhcc-CC
Confidence 4677899999999999999999999999999999988643211 1 124456889999999999765 46
Q ss_pred CCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641 135 PDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176 (192)
Q Consensus 135 ~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~ 176 (192)
|++..+|....++. .+....|||.|||-+.|.|.|++.++
T Consensus 253 PvdTteltrsfgWd--s~dsf~QHDiqEfnrVl~DnLEksmr 292 (1089)
T COG5077 253 PVDTTELTRSFGWD--SDDSFMQHDIQEFNRVLQDNLEKSMR 292 (1089)
T ss_pred CcchHHhhhhcCcc--cchHHHHHhHHHHHHHHHHHHHHhhc
Confidence 77777887766432 46678999999999999999998654
No 26
>KOG1867|consensus
Probab=99.59 E-value=2e-15 Score=131.74 Aligned_cols=109 Identities=29% Similarity=0.435 Sum_probs=95.6
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCC-CCCC
Q psy5641 58 KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCS-YNPD 136 (192)
Q Consensus 58 ~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~ 136 (192)
..-|+.||+|+|+||+||++||+|.+.+..+...+...+.... ......++.+++.+++..+|++. ..++
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~---------~~~~~~~l~~~~~~~~~~~~s~~~~~~~ 227 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEP---------SSSGSSCLVCDLDRLFQALYSGHNRTPY 227 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCC---------CCCCCcchhhhhhhhhhHhhcCCCCCCc
Confidence 4557899999999999999999999999999988876654111 11225689999999999999998 8899
Q ss_pred ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy5641 137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDL 175 (192)
Q Consensus 137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l 175 (192)
.|..+...+++..+++.+++|||||||+..+++.+|.+.
T Consensus 228 sp~~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~ 266 (492)
T KOG1867|consen 228 SPFELLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREK 266 (492)
T ss_pred ChHHHHHHHHHhCcccccccccchHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999888
No 27
>KOG1866|consensus
Probab=99.49 E-value=5.4e-14 Score=124.28 Aligned_cols=115 Identities=25% Similarity=0.360 Sum_probs=94.4
Q ss_pred CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641 57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD 136 (192)
Q Consensus 57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 136 (192)
....|++||+|-|+|||||+++|.+.++|.+|.-++......+.. .......+.+.++.+|..+..++...+
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~p--------d~s~~e~vl~~lQ~iF~hL~~s~lQyy 161 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLP--------DMSGDEKVLRHLQVIFGHLAASQLQYY 161 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccch--------hhcchHHHHHHHHHHHHHHHHHhhhhh
Confidence 445689999999999999999999999999999876443221110 111223388999999999999999999
Q ss_pred ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641 137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179 (192)
Q Consensus 137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~ 179 (192)
+|..|.+.++-........+||||-||+.-|||.+++.+++..
T Consensus 162 VPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg 204 (944)
T KOG1866|consen 162 VPEGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLG 204 (944)
T ss_pred cchhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998777778889999999999999999999987643
No 28
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.34 E-value=4e-12 Score=104.99 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=87.4
Q ss_pred cccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHH-cCCCCCCChHHH
Q psy5641 63 IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIW-SCSYNPDISNQF 141 (192)
Q Consensus 63 ~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~~~p~~~ 141 (192)
.||.|.+++||+||+||+|+.+|++|+.++... +. ....++.+.|+-||+.|. .++.....+..|
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~c-----------~~e~cL~cELgfLf~ml~~~~~g~~cq~sNf 66 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---EC-----------PKEFCLLCELGFLFDMLDSKAKGINCQASNF 66 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---CC-----------CccccHHHHHHHHHHHhhhhcCCCcChHHHH
Confidence 599999999999999999999999999988544 11 245689999999999998 666666778899
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcC
Q psy5641 142 KVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK 180 (192)
Q Consensus 142 ~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~ 180 (192)
.++++.......-+.|+|.++|..||+++|+.++.....
T Consensus 67 lr~l~~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~ 105 (295)
T PF13423_consen 67 LRALSWIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKP 105 (295)
T ss_pred HHHHhcCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCc
Confidence 998877654455677999999999999999999887665
No 29
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.23 E-value=9.1e-12 Score=100.38 Aligned_cols=30 Identities=30% Similarity=0.625 Sum_probs=26.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q psy5641 149 GTQYRGNNQHDAQEFLMWLLDKVHEDLNTA 178 (192)
Q Consensus 149 ~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~ 178 (192)
.+.|.+++||||||||++|||.||+++...
T Consensus 25 ~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~ 54 (245)
T cd02673 25 NTEFDNDDQQDAHEFLLTLLEAIDDIMQVN 54 (245)
T ss_pred hhhcCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 567999999999999999999999987543
No 30
>KOG1871|consensus
Probab=99.20 E-value=2.3e-11 Score=101.24 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=71.4
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC-------
Q psy5641 61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY------- 133 (192)
Q Consensus 61 g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~------- 133 (192)
-.+|+.|-||.|||||+||+|+.++||-+.+-... +.+... . ....+++.++..+.....+-..
T Consensus 27 ~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~-~~~~~~-------~-~~stp~lda~~~~~~df~n~~~~k~~r~N 97 (420)
T KOG1871|consen 27 DPRGSINKCNICFMNSILQALLYCSPFYNLLELIK-RADGTV-------K-EGSTPLLDASRPASSDFNNDSDAKLPRKN 97 (420)
T ss_pred CCccccccceeEeeHHHHHHHHhCccHHHHHHhhh-hhcCce-------e-cccchhHHHHHHHHhhccccchhhhhhhc
Confidence 45999999999999999999999999998764333 111110 0 2234455555444443321110
Q ss_pred ---------------------CCCChHHHHHHHHHhcCCC---CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCccccc
Q psy5641 134 ---------------------NPDISNQFKVIIDKYGTQY---RGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIK 187 (192)
Q Consensus 134 ---------------------~~~~p~~~~~~~~~~~~~f---~~~~QqDA~EFl~~LL~~L~~~l~~~~~k~~~~~k 187 (192)
.++-|..+...++. .++| ..++|+||.|||.++||.||+|+..+.+......+
T Consensus 98 ~~~~~~~~~~~ses~~~d~~~dav~~d~~~~~l~t-~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~ 174 (420)
T KOG1871|consen 98 SLRVPEHVVEKSESNKSDLQGDAVKPDPIYLDLLT-MSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPND 174 (420)
T ss_pred cCCccccccchhhhhhhcccCccccCCchhhhccc-CCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcc
Confidence 01112222222211 1233 45899999999999999999999866555444333
No 31
>KOG1872|consensus
Probab=99.04 E-value=6.1e-11 Score=100.86 Aligned_cols=112 Identities=22% Similarity=0.291 Sum_probs=85.3
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChH
Q psy5641 60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISN 139 (192)
Q Consensus 60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~ 139 (192)
+-.+|+.|+|||||||+.+|+|-.+|+++..+-...-..+... .......+..+++.+|+.|.++ .++.|.
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~-------t~~~a~~i~~~mR~~f~~~~~~--~~v~pi 173 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGD-------TWERRRRISIETRTCFRPLCEK--GAVAPI 173 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCc-------hhhhhhhHHHHHHHHHHhhhcc--CCcchH
Confidence 3457999999999999999999999999887753331111110 0012345778899999999886 788888
Q ss_pred HHHHHHHHhcCCCCC------CCCCCHHHHHHHHHHHHHHHHhhhcC
Q psy5641 140 QFKVIIDKYGTQYRG------NNQHDAQEFLMWLLDKVHEDLNTATK 180 (192)
Q Consensus 140 ~~~~~~~~~~~~f~~------~~QqDA~EFl~~LL~~L~~~l~~~~~ 180 (192)
.+.+.+.+..|.|.- +.||||.|.+..++-.++..+.....
T Consensus 174 ~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~ 220 (473)
T KOG1872|consen 174 NLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATE 220 (473)
T ss_pred HHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccc
Confidence 999988887777754 88999999999999999877665443
No 32
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.72 E-value=4.4e-08 Score=80.02 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=42.5
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHH
Q psy5641 59 VPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLL 125 (192)
Q Consensus 59 ~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 125 (192)
..+++||.|.|.|||+||+||+|.++|+||+++... ... -....++.++++.||
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~---~~~----------~~~~~~l~~el~~lf 65 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAII---LVA----------CPKESCLLCELGYLF 65 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHHHHhh---ccc----------CCcCccHHHHHHHHH
Confidence 457999999999999999999999999999972111 010 124567999999999
No 33
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.07 E-value=1.4e-06 Score=68.85 Aligned_cols=20 Identities=75% Similarity=1.360 Sum_probs=19.0
Q ss_pred ccccCCchhhHHHHHHHHhC
Q psy5641 64 GLRNHGNTCFINAILQCLSH 83 (192)
Q Consensus 64 GL~NlGntCY~NsvLQ~L~~ 83 (192)
||.|.|||||+||+||+|.+
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH
Confidence 89999999999999999965
No 34
>KOG1864|consensus
Probab=97.95 E-value=2.9e-05 Score=69.71 Aligned_cols=112 Identities=23% Similarity=0.287 Sum_probs=58.0
Q ss_pred cccCCchhhHHHHHHHHhCCHHHHHHHhhhc--chhhh-hcccccCCCCCCC-cchHHHHHHHHHHHHHcCCCCCCC--h
Q psy5641 65 LRNHGNTCFINAILQCLSHTDILAEYFVLDQ--YKIDM-SRRNKFNSKKYGT-KGEVTEQLAVLLKSIWSCSYNPDI--S 138 (192)
Q Consensus 65 L~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~--~~~~~-~~~~~~~~~~~~~-~~~l~~~l~~l~~~l~~~~~~~~~--p 138 (192)
|+|.||+||.|++||++..+|+|+.-+..-. ..... ..+...+...... ......+....+... +....... -
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 9999999999999999999999998775221 00000 0000000000000 001111111111111 11111111 1
Q ss_pred HHHHHHH---HHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641 139 NQFKVII---DKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177 (192)
Q Consensus 139 ~~~~~~~---~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~ 177 (192)
..+.... .+....|....|+||++|+.-++-.+.+.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 2222222 23344578899999999999988888766543
No 35
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.87 E-value=5.4e-06 Score=64.95 Aligned_cols=20 Identities=55% Similarity=1.021 Sum_probs=19.6
Q ss_pred ccccCCchhhHHHHHHHHhC
Q psy5641 64 GLRNHGNTCFINAILQCLSH 83 (192)
Q Consensus 64 GL~NlGntCY~NsvLQ~L~~ 83 (192)
||.|.|||||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH
Confidence 89999999999999999998
No 36
>KOG4598|consensus
Probab=97.86 E-value=1.3e-05 Score=71.76 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=55.3
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCC
Q psy5641 58 KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDI 137 (192)
Q Consensus 58 ~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ 137 (192)
...|++||.|...|||+|+.+|+|+..|.+++.+..... ..+.
T Consensus 83 ~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~-------------------------------------~~~e 125 (1203)
T KOG4598|consen 83 NGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN-------------------------------------DSLE 125 (1203)
T ss_pred CCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc-------------------------------------cccc
Confidence 456899999999999999999999999999998762110 0000
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641 138 SNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176 (192)
Q Consensus 138 p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~ 176 (192)
...+.+.+++.. -..++|||.+|+.+.++|.|+-.++
T Consensus 126 t~dlt~sfgw~s--~ea~~qhdiqelcr~mfdalehk~k 162 (1203)
T KOG4598|consen 126 TKDLTQSFGWTS--NEAYDQHDVQELCRLMFDALEHKWK 162 (1203)
T ss_pred chhhHhhcCCCc--chhhhhhhHHHHHHHHHHHHHhhhc
Confidence 111222221111 1246899999999999999986654
No 37
>KOG1864|consensus
Probab=97.79 E-value=3.5e-05 Score=69.13 Aligned_cols=111 Identities=27% Similarity=0.318 Sum_probs=77.4
Q ss_pred CCccccccCCchhhHH--HHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCC--CCC
Q psy5641 60 PGVIGLRNHGNTCFIN--AILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCS--YNP 135 (192)
Q Consensus 60 ~g~~GL~NlGntCY~N--svLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~ 135 (192)
-..-|..+.+++|+.| ++.|.+....+++...+..... .. ..++....+...+..++...-... ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 300 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTS----LK-----RSYIIKEELLTCLLDLFSSISSRKKLVGR 300 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchhhc----cc-----chhhhhHHHHHHhhhhccchhhhcccccc
Confidence 3568999999999999 9999999988888655422210 00 001122233334444444333322 234
Q ss_pred CChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641 136 DISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179 (192)
Q Consensus 136 ~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~ 179 (192)
+.|..|...+++....|..+.|||||||+.++++.+++-+....
T Consensus 301 i~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~ 344 (587)
T KOG1864|consen 301 ISPTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERES 344 (587)
T ss_pred cCcchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhc
Confidence 56889999999999999999999999999999999998776543
No 38
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.86 E-value=0.00052 Score=54.82 Aligned_cols=22 Identities=45% Similarity=0.878 Sum_probs=20.4
Q ss_pred ccccCCchhhHHHHHHHHhCCH
Q psy5641 64 GLRNHGNTCFINAILQCLSHTD 85 (192)
Q Consensus 64 GL~NlGntCY~NsvLQ~L~~~~ 85 (192)
||.|.||||++|++.|+|+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~Q 22 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFSQQ 22 (228)
T ss_pred CccccCcchhHHHHHHHHHHHH
Confidence 8999999999999999999854
No 39
>KOG1275|consensus
Probab=96.23 E-value=0.012 Score=54.79 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=58.5
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChH
Q psy5641 60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISN 139 (192)
Q Consensus 60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~ 139 (192)
..+.||.-.+-+-|.|++||.|+.+|++|..++.... ....|+++.|.=||..|..+..++....
T Consensus 497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C---------------~~e~CL~CELGFLF~Ml~~S~G~~Cqa~ 561 (1118)
T KOG1275|consen 497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHIC---------------TKEFCLLCELGFLFTMLDSSTGDPCQAN 561 (1118)
T ss_pred ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCcc---------------chhHHHHHHHHHHHHHHhhhcCCccchh
Confidence 4579999999999999999999999999999985521 1356899999999999988766666666
Q ss_pred HHHHHHH
Q psy5641 140 QFKVIID 146 (192)
Q Consensus 140 ~~~~~~~ 146 (192)
.|..+++
T Consensus 562 NFlraf~ 568 (1118)
T KOG1275|consen 562 NFLRAFR 568 (1118)
T ss_pred HHHHHHh
Confidence 7777664
No 40
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=94.25 E-value=0.029 Score=42.91 Aligned_cols=24 Identities=33% Similarity=0.611 Sum_probs=16.4
Q ss_pred CCccccccCCchhhHHHHHHHHhC
Q psy5641 60 PGVIGLRNHGNTCFINAILQCLSH 83 (192)
Q Consensus 60 ~g~~GL~NlGntCY~NsvLQ~L~~ 83 (192)
.-+.|+.|.++||++||++|.+-.
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHH
Confidence 456799999999999999998754
No 41
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=84.30 E-value=2.7 Score=35.32 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=42.7
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHH-HHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCC
Q psy5641 59 VPGVIGLRNHGNTCFINAILQCLSHTDI-LAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDI 137 (192)
Q Consensus 59 ~~g~~GL~NlGntCY~NsvLQ~L~~~~~-fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ 137 (192)
..|++=|+=.-|+||+||++=+|=++.. |+. .++..+..+...+ .
T Consensus 99 ~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-----------------------------~~l~~aw~~f~~G-----~ 144 (320)
T PF08715_consen 99 VNGFRVLKQSDNNCWVNAACLQLQALKIKFKS-----------------------------PGLDEAWNEFKAG-----D 144 (320)
T ss_dssp ETTEEEE---TTTHHHHHHHHHHTTST--BSS-----------------------------HHHHHHHHHHHTT------
T ss_pred ECCEEEEEecCCCcHHHHHHHHHHhcCCccCC-----------------------------HHHHHHHHHHhCC-----C
Confidence 3577777888899999999877644321 111 1223333333333 3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy5641 138 SNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173 (192)
Q Consensus 138 p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~ 173 (192)
|..|...+-.. .....++-.||+++|..|++.++.
T Consensus 145 ~~~fVa~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 145 PAPFVAWCYAS-TNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp -HHHHHHHHHH-TT--TTS---HHHHHHHHHTTB-T
T ss_pred hHHHHHHHHHH-cCCCCCCCcCHHHHHHHHHHhccc
Confidence 66666655443 345678999999999999987654
No 42
>KOG1871|consensus
Probab=64.91 E-value=3.5 Score=35.42 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=27.3
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHHHHH
Q psy5641 61 GVIGLRNHGNTCFINAILQCLSHTDILAEYF 91 (192)
Q Consensus 61 g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~ 91 (192)
-.+|+.|.||-|..++..|+..+..++...+
T Consensus 177 t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~ 207 (420)
T KOG1871|consen 177 TPRGLINNGNLCNLDSTEEAGLSESSGVQLL 207 (420)
T ss_pred cccccccccccccccchhhcccccCchhhhc
Confidence 4589999999999999999999988887644
No 43
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=61.69 E-value=4.3 Score=32.70 Aligned_cols=20 Identities=35% Similarity=0.798 Sum_probs=18.4
Q ss_pred ccccCCc-hhhHHHHHHHHhC
Q psy5641 64 GLRNHGN-TCFINAILQCLSH 83 (192)
Q Consensus 64 GL~NlGn-tCY~NsvLQ~L~~ 83 (192)
|..|.+| +||+-|+|=+++.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~ 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH
Confidence 7889999 9999999999987
No 44
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=34.92 E-value=23 Score=18.54 Aligned_cols=10 Identities=50% Similarity=1.275 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q psy5641 160 AQEFLMWLLD 169 (192)
Q Consensus 160 A~EFl~~LL~ 169 (192)
|.+|+.||++
T Consensus 19 ak~fl~~L~~ 28 (28)
T PF00123_consen 19 AKKFLQWLMN 28 (28)
T ss_dssp HHHHHHHHCH
T ss_pred HHHHHHHHhC
Confidence 6677777653
No 45
>KOG3556|consensus
Probab=34.31 E-value=66 Score=29.09 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=18.8
Q ss_pred ccccccCCchhhHHHHHHHHhCCHH
Q psy5641 62 VIGLRNHGNTCFINAILQCLSHTDI 86 (192)
Q Consensus 62 ~~GL~NlGntCY~NsvLQ~L~~~~~ 86 (192)
+.|+.-.-|.||++|.|=+++.-..
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~s 392 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFDS 392 (724)
T ss_pred cccccCCcchhhccccccccccccc
Confidence 4566667788999999988776443
No 46
>KOG1867|consensus
Probab=27.12 E-value=23 Score=31.67 Aligned_cols=28 Identities=21% Similarity=0.058 Sum_probs=24.1
Q ss_pred CccccccCCchhhHHHHHHHHhCCHHHH
Q psy5641 61 GVIGLRNHGNTCFINAILQCLSHTDILA 88 (192)
Q Consensus 61 g~~GL~NlGntCY~NsvLQ~L~~~~~fr 88 (192)
-..|..+.++||+||+.+|.++.++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~~c~~~i 103 (492)
T KOG1867|consen 76 EHSGNKKHNNTIDVNNGLLYCFACPDFI 103 (492)
T ss_pred cccccccccccceeehhhheeccCCcEe
Confidence 4588899999999999999999988553
No 47
>KOG1868|consensus
Probab=26.96 E-value=21 Score=33.12 Aligned_cols=16 Identities=56% Similarity=1.026 Sum_probs=14.6
Q ss_pred cccCCchhhHHHHHHH
Q psy5641 65 LRNHGNTCFINAILQC 80 (192)
Q Consensus 65 L~NlGntCY~NsvLQ~ 80 (192)
+-|+|||||||+++|.
T Consensus 205 ~~~l~~~~~~~~~~~~ 220 (653)
T KOG1868|consen 205 VPNLGNTCYMNAVLQL 220 (653)
T ss_pred cchhhchhcccchhhc
Confidence 7899999999999973
No 48
>PF14855 PapJ: Pilus-assembly fibrillin subunit, chaperone
Probab=23.91 E-value=30 Score=26.22 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=11.8
Q ss_pred ccCCchhhHHHHHHH
Q psy5641 66 RNHGNTCFINAILQC 80 (192)
Q Consensus 66 ~NlGntCY~NsvLQ~ 80 (192)
.-+--.|+||+++|+
T Consensus 11 aall~S~smn~vlqA 25 (187)
T PF14855_consen 11 AALLVSCSMNSVLQA 25 (187)
T ss_pred HHHhhcchhhhhhhh
Confidence 334467999999997
No 49
>KOG1491|consensus
Probab=23.43 E-value=40 Score=28.87 Aligned_cols=21 Identities=38% Similarity=0.724 Sum_probs=18.0
Q ss_pred CCCccccccCCchhhHHHHHH
Q psy5641 59 VPGVIGLRNHGNTCFINAILQ 79 (192)
Q Consensus 59 ~~g~~GL~NlGntCY~NsvLQ 79 (192)
..|++||-|.|-+-++|++--
T Consensus 22 kiGIVGlPNvGKST~fnalT~ 42 (391)
T KOG1491|consen 22 KIGIVGLPNVGKSTFFNALTK 42 (391)
T ss_pred eeeEeeCCCCchHHHHHHHhc
Confidence 469999999999999988743
No 50
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=23.17 E-value=46 Score=23.78 Aligned_cols=19 Identities=37% Similarity=0.740 Sum_probs=16.8
Q ss_pred CCccccccCCchhhHHHHH
Q psy5641 60 PGVIGLRNHGNTCFINAIL 78 (192)
Q Consensus 60 ~g~~GL~NlGntCY~NsvL 78 (192)
-.++|..|.|.++.+|+++
T Consensus 86 ~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 86 IGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4578999999999999986
No 51
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=20.95 E-value=47 Score=28.58 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=18.6
Q ss_pred CCccccccCCchhhHHHHHHH
Q psy5641 60 PGVIGLRNHGNTCFINAILQC 80 (192)
Q Consensus 60 ~g~~GL~NlGntCY~NsvLQ~ 80 (192)
-|++||-|.|-+-++||+-++
T Consensus 5 ~GIVGlPNVGKSTlFnAlT~~ 25 (372)
T COG0012 5 IGIVGLPNVGKSTLFNALTKA 25 (372)
T ss_pred eEEecCCCCcHHHHHHHHHcC
Confidence 489999999999999998664
Done!