Query psy5641
Match_columns 192
No_of_seqs 233 out of 1303
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 22:50:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1.9E-30 6.4E-35 218.2 12.1 123 57-184 3-125 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 1.6E-29 5.6E-34 215.0 10.6 120 57-181 57-176 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 8.5E-29 2.9E-33 205.6 11.7 121 55-182 2-123 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 2.8E-28 9.6E-33 203.0 10.7 114 60-181 1-115 (355)
5 3mhs_A Ubiquitin carboxyl-term 99.9 3.2E-27 1.1E-31 204.8 9.8 148 24-180 97-263 (476)
6 3ihp_A Ubiquitin carboxyl-term 99.9 6.2E-27 2.1E-31 215.2 11.2 146 24-176 275-471 (854)
7 1vjv_A Ubiquitin carboxyl-term 99.9 2.9E-26 9.9E-31 195.6 10.3 117 57-176 19-142 (415)
8 2ayn_A Ubiquitin carboxyl-term 99.9 3E-26 1E-30 194.5 7.2 112 59-178 11-128 (404)
9 1nb8_A Ubiquitin carboxyl-term 99.9 1.6E-25 5.6E-30 187.6 11.5 105 58-177 2-106 (353)
10 2f1z_A Ubiquitin carboxyl-term 99.9 4.8E-24 1.6E-28 187.1 10.5 108 55-177 168-275 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.7 5.7E-18 2E-22 140.7 3.5 100 62-174 9-114 (374)
12 1qmy_A Protease, leader protea 89.3 0.39 1.3E-05 34.4 3.8 23 61-83 12-34 (167)
13 2fe8_A PP1AB, ORF1AB, replicas 83.1 2.7 9.1E-05 34.1 6.2 79 58-171 98-177 (315)
14 3mp2_A Non-structural protein 82.8 1.6 5.3E-05 33.4 4.5 71 60-169 11-81 (211)
15 3c5t_B Exendin-4, exenatide; l 57.3 4.5 0.00016 21.0 1.2 11 160-170 11-21 (31)
16 1t5q_A Gastric inhibitory poly 44.1 13 0.00046 19.0 1.7 10 160-169 19-28 (30)
17 2g49_C Glucagon preproprotein; 40.5 12 0.00042 19.0 1.2 13 157-169 16-28 (29)
18 2b4n_A Gastric inhibitory poly 39.8 16 0.00055 20.3 1.7 12 159-170 18-29 (42)
19 2l63_A GLP-2, glucagon-like pe 36.3 15 0.00052 19.3 1.2 11 159-169 18-28 (33)
20 1jrj_A Exendin-4; Trp-CAGE, GL 32.4 19 0.00064 19.7 1.2 12 159-170 18-29 (39)
21 2rrh_A VIP peptides; peptide h 28.7 33 0.0011 17.3 1.7 10 160-169 19-28 (29)
22 3iol_B Glucagon; receptor-liga 25.7 36 0.0012 17.4 1.6 10 160-169 19-28 (31)
23 3c5k_A HD6, histone deacetylas 20.7 19 0.00066 24.2 -0.2 22 23-44 72-93 (109)
24 3dct_B Nuclear receptor coacti 20.6 40 0.0014 15.4 1.0 15 161-175 6-20 (21)
25 2d2p_A Pituitary adenylate cyc 20.3 62 0.0021 17.5 1.9 14 159-172 18-31 (39)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=218.22 Aligned_cols=123 Identities=44% Similarity=0.779 Sum_probs=105.7
Q ss_pred CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641 57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD 136 (192)
Q Consensus 57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 136 (192)
.+.+|++||.|+||||||||+||+|+|+|+||++|+...+...+...++ .+..+.+..+|+.|++.||.+....+
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~L~~~l~~~~~~~i 77 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNP-----LGMKGEIAEAYAELIKQMWSGRDAHV 77 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCT-----TSCTTHHHHHHHHHHHHHTSSSCSEE
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCC-----CCcchHHHHHHHHHHHHHHcCCCCCc
Confidence 4678999999999999999999999999999999997766544332221 23456799999999999999888889
Q ss_pred ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCcc
Q psy5641 137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYK 184 (192)
Q Consensus 137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k~~~ 184 (192)
.|..|+.++++..+.|.+++||||||||.+|||.||+++++..++++.
T Consensus 78 ~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~ 125 (367)
T 2y6e_A 78 APRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 125 (367)
T ss_dssp CCHHHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCC
T ss_pred CHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 999999999999999999999999999999999999999887766543
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.96 E-value=1.6e-29 Score=214.95 Aligned_cols=120 Identities=43% Similarity=0.803 Sum_probs=103.0
Q ss_pred CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641 57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD 136 (192)
Q Consensus 57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 136 (192)
.+.+|++||.|+||||||||+||||+|+|+||++|+...+..++...+. .+..+.+..+++.+++.||.+....+
T Consensus 57 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~~~~l~~~l~~~~~~~i 131 (396)
T 2gfo_A 57 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNL-----LGHKGEVAEEFGIIMKALWTGQYRYI 131 (396)
T ss_dssp CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCT-----TSCTTHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCC-----CCcccHHHHHHHHHHHHHHcCCCceE
Confidence 4578999999999999999999999999999999997766544433221 23456789999999999999888888
Q ss_pred ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy5641 137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKK 181 (192)
Q Consensus 137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k 181 (192)
.|..|+.+++...+.|.+++||||||||.+|||.||+++.+...+
T Consensus 132 ~P~~f~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~ 176 (396)
T 2gfo_A 132 SPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 176 (396)
T ss_dssp CCHHHHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC-
T ss_pred CHHHHHHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999999865443
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.96 E-value=8.5e-29 Score=205.63 Aligned_cols=121 Identities=39% Similarity=0.701 Sum_probs=100.0
Q ss_pred CCCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHc-CCC
Q psy5641 55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWS-CSY 133 (192)
Q Consensus 55 ~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~ 133 (192)
+.++.+|++||.|+||||||||+||+|+++|+||++++...+...... ......++..+|+.|++.||. +..
T Consensus 2 ~sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~-------~~~~~~~l~~~l~~l~~~l~~~~~~ 74 (348)
T 3nhe_A 2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHH-------GSNAHTALVEEFAKLIQTIWTSSPN 74 (348)
T ss_dssp ----CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCS-------SCCTTHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhcc-------CCCcccHHHHHHHHHHHHHHcCCCC
Confidence 356778999999999999999999999999999999987655433322 112456799999999999994 456
Q ss_pred CCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC
Q psy5641 134 NPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKK 182 (192)
Q Consensus 134 ~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k~ 182 (192)
..+.|..|+.+++...+.|.+++||||||||.+||+.||++++....++
T Consensus 75 ~~~~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~ 123 (348)
T 3nhe_A 75 DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP 123 (348)
T ss_dssp CEECCHHHHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCC
T ss_pred CccCHHHHHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCC
Confidence 6778999999999999999999999999999999999999998765443
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.95 E-value=2.8e-28 Score=202.99 Aligned_cols=114 Identities=34% Similarity=0.677 Sum_probs=93.9
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC-CCCCh
Q psy5641 60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY-NPDIS 138 (192)
Q Consensus 60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~p 138 (192)
.|++||.|+||||||||+||+|+++|+||++++...+...... .+...++..+|+.+++.||.+.. ..+.|
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~--------~~~~~~l~~~l~~l~~~l~~~~~~~~v~p 72 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG--------GGRAQELTEAFADVIGALWHPDSCEAVNP 72 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC--------------CHHHHHHHHHHHHTSSCSSCCCBCC
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC--------CCchhHHHHHHHHHHHHHhcCCCCCcccH
Confidence 4899999999999999999999999999999987654433211 12345799999999999999764 67899
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy5641 139 NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKK 181 (192)
Q Consensus 139 ~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k 181 (192)
..|+.++++..+.|.+++||||||||.+|||.||++++...++
T Consensus 73 ~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~ 115 (355)
T 3i3t_A 73 TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRR 115 (355)
T ss_dssp HHHHHHHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999999999999876554
No 5
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.94 E-value=3.2e-27 Score=204.84 Aligned_cols=148 Identities=18% Similarity=0.272 Sum_probs=110.3
Q ss_pred ccceecCCCcccccCCCCCcccCCCCcc-------ccCCCCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcc
Q psy5641 24 HSMSCRRQAYGLVSLSSNDIRVLPPKPL-------LFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQY 96 (192)
Q Consensus 24 ~~~~~lp~~~e~~~~~l~di~~~~p~~~-------~~~~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~ 96 (192)
...||.++++++.|+.+..-.. .|+.. ......+.+|++||.|+||||||||+||+|+|+|+||++++...+
T Consensus 97 ~~~~c~~~~~~v~d~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~ 175 (476)
T 3mhs_A 97 GLLFCFKCEDYIGNIDLINDAI-LAKYWDDVCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIH 175 (476)
T ss_dssp CCEEETTTTEEECSCHHHHTGG-GGGGHHHHHHHEECCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHH
T ss_pred CcEEeCCCCCCcccHHHHHHHH-hhhccchhhhcccCCCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcch
Confidence 4579999999999987632111 22211 122235788999999999999999999999999999999986554
Q ss_pred hhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCC---------CCChHHHH---HHHHHhcCCCCCCCCCCHHHHH
Q psy5641 97 KIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYN---------PDISNQFK---VIIDKYGTQYRGNNQHDAQEFL 164 (192)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~---------~~~p~~~~---~~~~~~~~~f~~~~QqDA~EFl 164 (192)
...... .....++.+++..++..+|..... ...|..+. ..+++..+.|.+++||||||||
T Consensus 176 ~~~~~~--------~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl 247 (476)
T 3mhs_A 176 SNNCKV--------RSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFW 247 (476)
T ss_dssp HHHCSS--------CCTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHH
T ss_pred hhhccC--------CCcccchHHHHHHHHHHHhhcccccccccccccccCcchHHHHHHHHHHhccccCCCCCcCHHHHH
Confidence 322211 123467899999999999985422 33455544 4456888999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q psy5641 165 MWLLDKVHEDLNTATK 180 (192)
Q Consensus 165 ~~LL~~L~~~l~~~~~ 180 (192)
.+||+.||+++.....
T Consensus 248 ~~LLd~L~~~~~~~~~ 263 (476)
T 3mhs_A 248 QFIINQIHQSYVLDLP 263 (476)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999999876543
No 6
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.94 E-value=6.2e-27 Score=215.19 Aligned_cols=146 Identities=23% Similarity=0.299 Sum_probs=112.6
Q ss_pred ccceecCCCcccccCCCCCcc------cCCCCccc-------------c-------CC-----CCCCCCccccccCCchh
Q psy5641 24 HSMSCRRQAYGLVSLSSNDIR------VLPPKPLL-------------F-------AN-----GDKVPGVIGLRNHGNTC 72 (192)
Q Consensus 24 ~~~~~lp~~~e~~~~~l~di~------~~~p~~~~-------------~-------~~-----~~~~~g~~GL~NlGntC 72 (192)
..+||+++++++.++.++++. +.+|+++. + .+ ..+.+|++||.|+||||
T Consensus 275 ~~~~cy~~~~~v~~~~l~~~l~~~gi~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~p~~~~G~~GL~NlGNTC 354 (854)
T 3ihp_A 275 ADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSC 354 (854)
T ss_dssp CCEEETTTTEECBCTTHHHHHHHTTCCC-----------------------------------CCCSTTCCCBCCCSSCH
T ss_pred CeEEEccCCCeeeCccHHHHHHHhCcccccccccchhhhhhhhhhccccchhhhhcccCcccccccCCCccceEecCCce
Confidence 558999999999999888732 13332110 0 11 23578999999999999
Q ss_pred hHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC-------------------
Q psy5641 73 FINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY------------------- 133 (192)
Q Consensus 73 Y~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~------------------- 133 (192)
||||+||+|+++|+||++|+......... . ......++.++|++|+..||++.+
T Consensus 355 YmNSvLQ~L~~~p~fr~~ll~~~~~~~~~--~-----~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~ 427 (854)
T 3ihp_A 355 YLNSVVQVLFSIPDFQRKYVDKLEKIFQN--A-----PTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEV 427 (854)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTTHHHHHHH--C-----CSCGGGCHHHHHHHHHHHHHSCC--------------------
T ss_pred ehhHHHHHHhCcHHHHHHHHhhhhhhhcc--c-----cCCccccHHHHHHHHHHHHhccccccccccccccccccccccC
Confidence 99999999999999999998543221100 1 113456799999999999998653
Q ss_pred -CCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641 134 -NPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176 (192)
Q Consensus 134 -~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~ 176 (192)
..+.|..|+..+++..+.|.+++||||+|||.+||+.||+++.
T Consensus 428 ~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~ 471 (854)
T 3ihp_A 428 QDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR 471 (854)
T ss_dssp -CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT
T ss_pred CCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999875
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.93 E-value=2.9e-26 Score=195.60 Aligned_cols=117 Identities=19% Similarity=0.246 Sum_probs=94.2
Q ss_pred CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641 57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD 136 (192)
Q Consensus 57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 136 (192)
....+++||.|+||||||||+||+|+++|+||++++......... ... ........++.++|+.||..||.+...++
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~--~~~-~~~~~~~~~l~~~l~~lf~~l~~~~~~~v 95 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVS--NSG-AQDEEIHKQIVIEMKRCFENLQNKSFKSV 95 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCS--CTT-STTHHHHHHHHHHHHHHHHHHHCC-CCEE
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccC--Ccc-cccccchhHHHHHHHHHHHHHhcCCCCcc
Confidence 445678999999999999999999999999999998644321110 000 00000145799999999999999877889
Q ss_pred ChHHHHHHHHHhcCCCC-------CCCCCCHHHHHHHHHHHHHHHHh
Q psy5641 137 ISNQFKVIIDKYGTQYR-------GNNQHDAQEFLMWLLDKVHEDLN 176 (192)
Q Consensus 137 ~p~~~~~~~~~~~~~f~-------~~~QqDA~EFl~~LL~~L~~~l~ 176 (192)
.|..|+.+++...+.|. +++||||+|||.+||+.|++++.
T Consensus 96 ~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~ 142 (415)
T 1vjv_A 96 LPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFG 142 (415)
T ss_dssp CCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhc
Confidence 99999999999989998 89999999999999999999985
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.93 E-value=3e-26 Score=194.48 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=92.3
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCCh
Q psy5641 59 VPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDIS 138 (192)
Q Consensus 59 ~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p 138 (192)
..+++||.|+||||||||+||+|+|+|+||++++.......... ..+...++.++|+.||..||.+. .++.|
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~l~~~l~~lf~~l~~~~-~~v~P 82 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASG-------EMASAQYITAALRDLFDSMDKTS-SSIPP 82 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------------CHHHHHHHHHHHHHHHHHHHC-SEECC
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCC-------CCCcccHHHHHHHHHHHHHhcCC-CcCCh
Confidence 45789999999999999999999999999999986432210100 01234679999999999999875 77889
Q ss_pred HHHHHHHHHhcCCCC------CCCCCCHHHHHHHHHHHHHHHHhhh
Q psy5641 139 NQFKVIIDKYGTQYR------GNNQHDAQEFLMWLLDKVHEDLNTA 178 (192)
Q Consensus 139 ~~~~~~~~~~~~~f~------~~~QqDA~EFl~~LL~~L~~~l~~~ 178 (192)
..|+.+++...+.|. +++||||||||.+||+.||+++...
T Consensus 83 ~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~ 128 (404)
T 2ayn_A 83 IILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAI 128 (404)
T ss_dssp HHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccc
Confidence 999999999888887 5899999999999999999998653
No 9
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.92 E-value=1.6e-25 Score=187.55 Aligned_cols=105 Identities=25% Similarity=0.334 Sum_probs=86.8
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCC
Q psy5641 58 KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDI 137 (192)
Q Consensus 58 ~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ 137 (192)
..+|++||.|+||||||||+||+|+|+|+||++++...... .....++..+|+.+|..||.+. .++.
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~------------~~~~~~~~~~l~~lf~~l~~~~-~~~~ 68 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------------DDSSKSVPLALQRVFYELQHSD-KPVG 68 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT------------SCTTTCHHHHHHHHHHHHHHCS-SCBC
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC------------CcccccHHHHHHHHHHHHhhcC-CCCC
Confidence 46799999999999999999999999999999987432110 0123568899999999999864 5678
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641 138 SNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177 (192)
Q Consensus 138 p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~ 177 (192)
|..|...++ .+.|.+++||||||||.+||+.||+++..
T Consensus 69 ~~~l~~~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~ 106 (353)
T 1nb8_A 69 TKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKG 106 (353)
T ss_dssp CHHHHHHHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHhhcC--CCCCCcccchhHHHHHHHHHHHHHHHhcC
Confidence 888887764 36799999999999999999999998764
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.90 E-value=4.8e-24 Score=187.08 Aligned_cols=108 Identities=24% Similarity=0.334 Sum_probs=86.3
Q ss_pred CCCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCC
Q psy5641 55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYN 134 (192)
Q Consensus 55 ~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 134 (192)
+..+.+|++||.|+||||||||+||+|+++|+||++++...... .....++..+|+.+|..||.+. .
T Consensus 168 ~~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~------------~~~~~~~~~~l~~lf~~l~~~~-~ 234 (522)
T 2f1z_A 168 DSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------------DDSSKSVPLALQRVFYELQHSD-K 234 (522)
T ss_dssp CTTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS------------SCTTTCHHHHHHHHHHHHHHCS-S
T ss_pred CccccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC------------CcccchHHHHHHHHHHHHhcCC-C
Confidence 45678899999999999999999999999999999987432110 0123468899999999999864 5
Q ss_pred CCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641 135 PDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177 (192)
Q Consensus 135 ~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~ 177 (192)
++.|..|...++ .+.|.+++|||||||+.+||+.||+++..
T Consensus 235 ~~~~~~l~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~ 275 (522)
T 2f1z_A 235 PVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKG 275 (522)
T ss_dssp CBCCTTHHHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTT
T ss_pred ccCcHHHHhhcC--CccCCCcccccHHHHHHHHHHHHHhhccC
Confidence 677887776653 36799999999999999999999998864
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.69 E-value=5.7e-18 Score=140.69 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=75.7
Q ss_pred ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHH-HHHHHHHHcCCCCCCChHH
Q psy5641 62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQL-AVLLKSIWSCSYNPDISNQ 140 (192)
Q Consensus 62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~l~~~~~~~~~p~~ 140 (192)
.+||.|+||||||||+||+|+.+|.+++.++....... ..+....+..+| ..++..|.. .++.|..
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~----------~~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~ 75 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKN----------DVEYYSETQELLRTEIVNPLRI---YGYVCAT 75 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTT----------SCTTHHHHHHHHHHTTHHHHHH---TSEECHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCC----------cchhHHHHHHHHHHHHHHHHhh---cCCCcHH
Confidence 58999999999999999999999999999985421110 001223578888 788888876 6777888
Q ss_pred HHHHHHHhcCCCC-----CCCCCCHHHHHHHHHHHHHHH
Q psy5641 141 FKVIIDKYGTQYR-----GNNQHDAQEFLMWLLDKVHED 174 (192)
Q Consensus 141 ~~~~~~~~~~~f~-----~~~QqDA~EFl~~LL~~L~~~ 174 (192)
|+..+++..|+|. +++||||+||+..||+.|...
T Consensus 76 ~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ 114 (374)
T 2vhf_A 76 KIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRV 114 (374)
T ss_dssp HHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhc
Confidence 8888876666553 488999999999999988754
No 12
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=89.29 E-value=0.39 Score=34.35 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.1
Q ss_pred CccccccCCchhhHHHHHHHHhC
Q psy5641 61 GVIGLRNHGNTCFINAILQCLSH 83 (192)
Q Consensus 61 g~~GL~NlGntCY~NsvLQ~L~~ 83 (192)
.+.|+.|.-++|++|++||.+-.
T Consensus 12 ~fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHH
T ss_pred ccccCCCCCcchHHHHHHHHHHH
Confidence 57899999999999999997643
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=83.12 E-value=2.7 Score=34.10 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=48.5
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHH-HHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641 58 KVPGVIGLRNHGNTCFINAILQCLSHTDI-LAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD 136 (192)
Q Consensus 58 ~~~g~~GL~NlGntCY~NsvLQ~L~~~~~-fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 136 (192)
...|++=|+=.-|+||+||++=+|=++.. |+ . .+++++..+...+
T Consensus 98 ~~~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~--------------------------~---~~l~~aw~~f~~G----- 143 (315)
T 2fe8_A 98 QVGGLTSIKWADNNCYLSSVLLALQQLEVKFN--------------------------A---PALQEAYYRARAG----- 143 (315)
T ss_dssp EETTEECCCCCTTTHHHHHHHHHHHTSCCCBS--------------------------S---HHHHHHHHHHHHT-----
T ss_pred EECCEEEEeecCCccHHHHHHHHHHhcCCccC--------------------------C---HHHHHHHHHHhCC-----
Confidence 34567777778899999999776633211 11 0 1233333333333
Q ss_pred ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q psy5641 137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKV 171 (192)
Q Consensus 137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L 171 (192)
.|..|.+.+-.... ...++-.||+++|..|++.-
T Consensus 144 d~~~FVa~~Ya~~~-~~~G~~gDa~~~L~~Ll~~~ 177 (315)
T 2fe8_A 144 DAANFCALILAYSN-KTVGELGDVRETMTHLLQHA 177 (315)
T ss_dssp CCHHHHHHHHHHTT-CCTTSCCCHHHHHHHHHTTB
T ss_pred ChHHHHHHHHHhcC-CCCCCCccHHHHHHHHHhcC
Confidence 36677766644433 44788999999999985543
No 14
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=82.83 E-value=1.6 Score=33.39 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=45.2
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChH
Q psy5641 60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISN 139 (192)
Q Consensus 60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~ 139 (192)
.|++=|+=.-|+||+||++=+|=++... +..+|.. +..-.|.
T Consensus 11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~~-------------------------------------~~~aw~~-f~~Gd~~ 52 (211)
T 3mp2_A 11 NGKIILKQGDNNCWINACCYQLQAFDFF-------------------------------------NNEAWEK-FKKGDVM 52 (211)
T ss_dssp TTEEEECCCTTCHHHHHHHHHHTTCTTC-------------------------------------CCHHHHH-HTTTCCH
T ss_pred CCEEEEEccCCCcHHHHHHHHHHhcChh-------------------------------------HHHHHHH-HhCCChH
Confidence 4666677778999999998776443322 1112221 2333466
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q psy5641 140 QFKVIIDKYGTQYRGNNQHDAQEFLMWLLD 169 (192)
Q Consensus 140 ~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~ 169 (192)
.|.+.+-... ....++-.||+++|..|+.
T Consensus 53 ~fV~~~Ya~~-~~~~G~~gDa~~~L~~Ll~ 81 (211)
T 3mp2_A 53 DFVNLCYAAT-TLARGHSGDAEYLLELMLN 81 (211)
T ss_dssp HHHHHHHHHH-TCCTTSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCCCCCcCHHHHHHHHHH
Confidence 6665554332 3557889999999999984
No 15
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=57.28 E-value=4.5 Score=20.97 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=9.3
Q ss_pred HHHHHHHHHHH
Q psy5641 160 AQEFLMWLLDK 170 (192)
Q Consensus 160 A~EFl~~LL~~ 170 (192)
|+||+.||++.
T Consensus 11 akdFv~WL~ng 21 (31)
T 3c5t_B 11 VRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 78999999864
No 16
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=44.06 E-value=13 Score=19.02 Aligned_cols=10 Identities=50% Similarity=1.122 Sum_probs=8.2
Q ss_pred HHHHHHHHHH
Q psy5641 160 AQEFLMWLLD 169 (192)
Q Consensus 160 A~EFl~~LL~ 169 (192)
|.+|+.||++
T Consensus 19 ak~fv~wLl~ 28 (30)
T 1t5q_A 19 QQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6888888886
No 17
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=40.46 E-value=12 Score=19.01 Aligned_cols=13 Identities=38% Similarity=1.007 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHHH
Q psy5641 157 QHDAQEFLMWLLD 169 (192)
Q Consensus 157 QqDA~EFl~~LL~ 169 (192)
|+=|.+|+.||++
T Consensus 16 ~~aak~fv~wL~~ 28 (29)
T 2g49_C 16 SRRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHHhc
Confidence 3347888888875
No 18
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=39.83 E-value=16 Score=20.26 Aligned_cols=12 Identities=42% Similarity=0.988 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHH
Q psy5641 159 DAQEFLMWLLDK 170 (192)
Q Consensus 159 DA~EFl~~LL~~ 170 (192)
=|.+|+.||++.
T Consensus 18 ~akdFv~WL~~~ 29 (42)
T 2b4n_A 18 HQQDFVNWLLAQ 29 (42)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 379999999875
No 19
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=36.29 E-value=15 Score=19.26 Aligned_cols=11 Identities=36% Similarity=1.084 Sum_probs=8.7
Q ss_pred CHHHHHHHHHH
Q psy5641 159 DAQEFLMWLLD 169 (192)
Q Consensus 159 DA~EFl~~LL~ 169 (192)
=|.+|+.||++
T Consensus 18 aak~fl~wL~~ 28 (33)
T 2l63_A 18 AARDFINWLIQ 28 (33)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 37889888875
No 20
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=32.37 E-value=19 Score=19.66 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHH
Q psy5641 159 DAQEFLMWLLDK 170 (192)
Q Consensus 159 DA~EFl~~LL~~ 170 (192)
=|.+|+.||++.
T Consensus 18 aak~fv~wL~~~ 29 (39)
T 1jrj_A 18 AVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 378999998863
No 21
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=28.68 E-value=33 Score=17.28 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=7.4
Q ss_pred HHHHHHHHHH
Q psy5641 160 AQEFLMWLLD 169 (192)
Q Consensus 160 A~EFl~~LL~ 169 (192)
|.+|+.||++
T Consensus 19 ak~fl~~l~~ 28 (29)
T 2rrh_A 19 VKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6778777775
No 22
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=25.65 E-value=36 Score=17.42 Aligned_cols=10 Identities=50% Similarity=1.235 Sum_probs=8.1
Q ss_pred HHHHHHHHHH
Q psy5641 160 AQEFLMWLLD 169 (192)
Q Consensus 160 A~EFl~~LL~ 169 (192)
|.||+.||++
T Consensus 19 ak~Fv~wL~~ 28 (31)
T 3iol_B 19 AKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 7888888875
No 23
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=20.70 E-value=19 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=19.2
Q ss_pred cccceecCCCcccccCCCCCcc
Q psy5641 23 DHSMSCRRQAYGLVSLSSNDIR 44 (192)
Q Consensus 23 ~~~~~~lp~~~e~~~~~l~di~ 44 (192)
...+||.++++++.++++.|++
T Consensus 72 ~~~vwCy~cd~~V~~~~L~d~~ 93 (109)
T 3c5k_A 72 DLSAWCYYCQAYVHHQALLDVK 93 (109)
T ss_dssp TCCEEETTTTEEBCCGGGHHHH
T ss_pred CCCEEECCCCCEEecccccChH
Confidence 3458999999999999999987
No 24
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=20.60 E-value=40 Score=15.39 Aligned_cols=15 Identities=47% Similarity=0.769 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy5641 161 QEFLMWLLDKVHEDL 175 (192)
Q Consensus 161 ~EFl~~LL~~L~~~l 175 (192)
|.+|++||+.=++++
T Consensus 6 hqllrylldkdek~l 20 (21)
T 3dct_B 6 HQLLRYLLDKDEKDL 20 (26)
T ss_pred HHHHHHHHccchhhc
Confidence 778899988765553
No 25
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=20.32 E-value=62 Score=17.50 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHH
Q psy5641 159 DAQEFLMWLLDKVH 172 (192)
Q Consensus 159 DA~EFl~~LL~~L~ 172 (192)
=|.+|+.||++.--
T Consensus 18 ~ak~fl~~l~~kr~ 31 (39)
T 2d2p_A 18 AVKKYLAAVLGKRY 31 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc
Confidence 37899999996543
Done!