RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5641
(192 letters)
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 104 bits (260), Expect = 4e-26
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 58 KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEV 117
K G GLRN GNTC++N+ LQCL HT L +YF+ D+Y+ ++ N G G V
Sbjct: 261 KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPL-----GMHGSV 315
Query: 118 TEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177
A L+K ++ + + + FK I + ++ G +Q D+QEF+ +LLD +HEDLN
Sbjct: 316 ASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNR 375
Query: 178 ATKKKY 183
KK Y
Sbjct: 376 IIKKPY 381
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 95.6 bits (238), Expect = 6e-24
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE 119
G GL N GNTC++N++LQ L L +Y + + + G+ ++
Sbjct: 1 EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSE---------LINPLGSLNQLPR 51
Query: 120 QLAVLLKSIWS-CSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177
LA L ++ S S N +S F + K Q+ G Q DA EFL++LLD++HEDLN+
Sbjct: 52 ALADLFHALQSPNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNS 111
Query: 178 ATKKKYKTIKVKTP 191
K+K + ++
Sbjct: 112 LKKRKSHAAENESL 125
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 70.8 bits (173), Expect = 1e-14
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 45 VLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRN 104
+ PK ++ + GLRN GNTC++N LQCL L Y +++
Sbjct: 54 LANPKKMVVSKRKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDF 113
Query: 105 KFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISN-QFKVIIDKYGTQYRGNNQHDAQEF 163
G G + + L C IS F I+ + G+ Q D+QEF
Sbjct: 114 PR-----GKPGSNAFKQFIALYETPGCHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEF 168
Query: 164 LMWLLDKVHEDLNTATKKK 182
L++ LD +HEDLN +
Sbjct: 169 LIFFLDLLHEDLNGNKSRS 187
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 66.1 bits (162), Expect = 3e-13
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
GL+N GNTCF+N++LQCL+HT LA Y + ++ D ++ + + +
Sbjct: 3 GLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC------CNEGFCMMCALEAHVER 56
Query: 124 LLKSIWSCSYNP-DISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
L S P S+ K I +R Q DA EFL +LLD + +
Sbjct: 57 ALASS-GPGSAPRIFSSNLKQI----SKHFRIGRQEDAHEFLRYLLDAMQK 102
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 66.6 bits (163), Expect = 4e-13
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 30/161 (18%)
Query: 39 SSNDIRVLPPKPLLFA--NGDK-VPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQ 95
+ I L P L +G +PG +GL N N + N I+Q LSH + +F+L
Sbjct: 93 TKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLL-- 150
Query: 96 YKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKY------- 148
+ K E+ ++L+ L++ IW+ FK + +
Sbjct: 151 --------YENYENIKDRKSELVKRLSELIRKIWNP-------RNFKGHVSPHELLQAVS 195
Query: 149 ---GTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTI 186
++ Q D EFL WLL+ +H+DL + K I
Sbjct: 196 KVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSII 236
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 56.6 bits (137), Expect = 6e-10
Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 43/106 (40%)
Query: 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
GL N GNTCF NA++Q LS T L E +E
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELL--------------------------SETPKE 34
Query: 124 LLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLD 169
L + C P Q++G Q D+ E L +LLD
Sbjct: 35 LFSQV--CRKAP---------------QFKGYQQQDSHELLRYLLD 63
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 53.9 bits (130), Expect = 6e-09
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 27/121 (22%)
Query: 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNS---------KKYGTK 114
GL N G TCF+N ILQ L H +L YF+ D++ + + +++
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYS 61
Query: 115 GEVTEQLAV-LLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
G+ + + LL W K+ G +Q DA EF +LLD++H
Sbjct: 62 GDRSPYGPINLLYLSW-----------------KHSRNLAGYSQQDAHEFFQFLLDQLHT 104
Query: 174 D 174
Sbjct: 105 H 105
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 230
Score = 51.1 bits (123), Expect = 4e-08
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 64 GLRNHGNTCFINAILQCLSHT 84
GLRN GNTC++N+ILQCLS
Sbjct: 1 GLRNLGNTCYMNSILQCLSAD 21
Score = 40.0 bits (94), Expect = 3e-04
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 155 NNQHDAQEFLMWLLDKVH 172
+Q DAQEFL++LLD +H
Sbjct: 20 ADQQDAQEFLLFLLDGLH 37
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 49.2 bits (118), Expect = 3e-07
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 22/128 (17%)
Query: 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
GLRN GN+C++N++LQ L + NKF S ++ QL
Sbjct: 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYD--------DLENKFPSDVVDPANDLNCQLIK 52
Query: 124 LLKSIWSCSY----NPDISN----------QFKVIIDKYGTQYRGNNQHDAQEFLMWLLD 169
L + S Y + N FK +I K ++ Q DA EFL+ L+D
Sbjct: 53 LADGLLSGRYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLID 112
Query: 170 KVHEDLNT 177
K+ +
Sbjct: 113 KLDRESFK 120
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 48.5 bits (116), Expect = 4e-07
Identities = 32/130 (24%), Positives = 45/130 (34%), Gaps = 51/130 (39%)
Query: 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
GL N GNTC+ N++LQ L YF E L
Sbjct: 1 GLENFGNTCYCNSVLQAL--------YF---------------------------ENLLT 25
Query: 124 LLKSIWSCSYNPDISNQF--------KVIIDKYGTQY---RGNNQHDAQEFLMWLLDKVH 172
LK ++ IS Q K I + + DA EFL +LL+++
Sbjct: 26 CLKDLFES-----ISEQKKRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIA 80
Query: 173 EDLNTATKKK 182
E L+ K +
Sbjct: 81 EILDAERKAE 90
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 45.4 bits (107), Expect = 7e-06
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 63 IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLA 122
+GL N GN+C++++++Q L + E F L Q + + QL
Sbjct: 304 VGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQ--------HFEICYMKNPLECLFCQLM 355
Query: 123 VLLKSIWSCSYNPDISN----QFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
LL + N ++ FK++I + ++ Q DA EFL++LL+K+ +
Sbjct: 356 KLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRK 410
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated
peptides by cleavage of isopeptide bonds. They
hydrolyse bonds involving the carboxyl group of the
C-terminal Gly residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over
50 members, family C19 is one of the largest families
of peptidases in the human genome.
Length = 255
Score = 44.8 bits (106), Expect = 7e-06
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 64 GLRNHGNTCFINAILQCLSH 83
GL N GNTC++N++LQ L
Sbjct: 1 GLNNLGNTCYLNSVLQALFS 20
Score = 40.9 bits (96), Expect = 1e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 155 NNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIKVKTP 191
+ Q DA EFL++LLDK+HE+L ++K+ + +K+
Sbjct: 20 SEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSL 56
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 44.5 bits (105), Expect = 9e-06
Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 22/131 (16%)
Query: 47 PPKPLLFANGDKVPGVIGLRNHGNTCFINAILQ----CLSHTDILAEYFVLDQYKIDMSR 102
P + + +GL N GNTC++N++LQ C L L +
Sbjct: 9 PSSATSCEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQS 68
Query: 103 RNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQE 162
N +KY + LL ++ NP Y G QHDAQE
Sbjct: 69 SFLLNPEKY-NDELANQAPRRLLNALREV--NP---------------MYEGYLQHDAQE 110
Query: 163 FLMWLLDKVHE 173
L +L + E
Sbjct: 111 VLQCILGNIQE 121
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 44.4 bits (105), Expect = 1e-05
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
GL N GNTC++N++LQ L +A+ F +++ R S +
Sbjct: 1 GLINLGNTCYMNSVLQAL----FMAKDFRRQVLSLNLPRLGDSQS---------VMKKLQ 47
Query: 124 LLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVH 172
LL++ + + + + +Q D E+L +LLD++H
Sbjct: 48 LLQAHLMHTQRRAEAPPDYFLEASRPPWFTPGSQQDCSEYLRYLLDRLH 96
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 42.2 bits (100), Expect = 6e-05
Identities = 32/117 (27%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE- 119
G +GL+N G TC++N++LQ L T F Y I K
Sbjct: 1 GYVGLKNQGATCYMNSLLQQLYMT----PEFRNAVYSI------PPTEDDDDNKSVPLAL 50
Query: 120 QLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQ-YRGNNQHDAQEFLMWLLDKVHEDL 175
Q L S +P + + +G QHD QEF L DK+ E L
Sbjct: 51 Q---RLFLFLQLSESPVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKL 104
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 240
Score = 37.7 bits (88), Expect = 0.001
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 64 GLRNHGNTCFINAILQCLSHTDILAEY 90
GL N GNTCF+N++LQ L+ L EY
Sbjct: 1 GLVNLGNTCFMNSVLQALASLPSLIEY 27
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyse bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 305
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 64 GLRNHGNTCFINAILQCLSHT----DILAEY 90
GL N GNTC++N+ LQCL D L Y
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNY 31
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 37.5 bits (87), Expect = 0.003
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKI 98
N K G +GLRN G TC++N++LQ L F D Y I
Sbjct: 186 NSKKETGYVGLRNQGATCYMNSLLQSLFFI----AKFRKDVYGI 225
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 33.5 bits (77), Expect = 0.049
Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 14/127 (11%)
Query: 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
GL+N G TC++N+ LQ + D +N K + + + +QL +
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQT-IIDQLQL 59
Query: 124 LLKSIWSCSYNPDISNQFKVIIDKYG----TQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179
+ + + ++D G Q DAQEF L + L+ +
Sbjct: 60 IFAQ---------LQFGNRSVVDPSGFVKALGLDTGQQQDAQEFSKLFLSLLEAKLSKSK 110
Query: 180 KKKYKTI 186
K I
Sbjct: 111 NPDLKNI 117
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 343
Score = 32.1 bits (73), Expect = 0.13
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 63 IGLRNHGNTCFINAILQ 79
GL N GNTC++N++LQ
Sbjct: 2 AGLDNIGNTCYLNSLLQ 18
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 31.2 bits (71), Expect = 0.26
Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 25/120 (20%)
Query: 64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ-LA 122
GL N+G C++NA+LQ + +F+ FN+ + E L
Sbjct: 2 GLENNGPNCYLNALLQLM--------FFIPP----------LFNAILRHSADCPKENCLL 43
Query: 123 VLLKSIW-----SCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177
L ++ S N +N + Q D QE ++L+++ L T
Sbjct: 44 CELGFLFDMLDKSTGQNCQATNLLRTFSGIPEAA-ALGLQQDIQEANRFILEQLSLPLLT 102
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 228
Score = 29.8 bits (67), Expect = 0.79
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 64 GLRNHGNTCFINAILQCL 81
GL+N GNTC+ +A++Q L
Sbjct: 1 GLKNVGNTCWFSAVIQSL 18
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 245
Score = 27.9 bits (62), Expect = 2.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 65 LRNHGNTCFINAILQCLS 82
L N GN+C+ N+ +Q LS
Sbjct: 2 LVNTGNSCYFNSTMQALS 19
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity.
The Ras superfamily is divided into at least four
families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf
families. This superfamily also includes proteins like
the GTP translation factors, Era-like GTPases, and
G-alpha chain of the heterotrimeric G proteins. Members
of the Ras superfamily regulate a wide variety of
cellular functions: the Ras family regulates gene
expression, the Rho family regulates cytoskeletal
reorganization and gene expression, the Rab and
Sar1/Arf families regulate vesicle trafficking, and the
Ran family regulates nucleocytoplasmic transport and
microtubule organization. The GTP translation factor
family regulates initiation, elongation, termination,
and release in translation, and the Era-like GTPase
family regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 27.0 bits (60), Expect = 5.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 61 GVIGLRNHGNTCFINAILQ 79
V+G G + +NA+L
Sbjct: 1 VVVGRGGVGKSSLLNALLG 19
>gnl|CDD|200438 cd11282, ADF_coactosin_like, Coactosin-like members of the ADF
homology domain family. Actin depolymerization
factor/cofilin-like domains (ADF domains) are present in
a family of essential eukaryotic actin regulatory
proteins. Many of these proteins enhance the turnover
rate of actin and interact with actin monomers as well
as actin filaments. The function of coactosins is not
well understood. They appear to interfere with the
capping of actin filaments in Dictyostelium, and may not
be able to bind monomeric globular actin. A role for
coactosins as chaperones stabilizing 5-lipoxygenase
(5LO) has been suggested; 5LO plays a crucial role in
leukotriene synthesis.
Length = 114
Score = 26.1 bits (58), Expect = 6.2
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKF 106
+ LR G+ I+ + L ++L +V S+R+KF
Sbjct: 28 TLVLRGSGS-GGIDELKAQLPDDEVLF-GYVRITLGDGESKRSKF 70
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,423,285
Number of extensions: 849358
Number of successful extensions: 667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 660
Number of HSP's successfully gapped: 42
Length of query: 192
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 100
Effective length of database: 6,857,034
Effective search space: 685703400
Effective search space used: 685703400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)