RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5641
(192 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 104 bits (259), Expect = 1e-27
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 10/145 (6%)
Query: 43 IRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSR 102
IR L P G P + GLRN GNTC++N+ILQCL + LA+YF + Y+ D++R
Sbjct: 1 IRNLNP-----VFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINR 55
Query: 103 RNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQE 162
N G KGEV E+ +++K++W+ Y FK+ I K Q+ G +Q D+QE
Sbjct: 56 SNLL-----GHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQE 110
Query: 163 FLMWLLDKVHEDLNTATKKKYKTIK 187
L++L+D +HEDLN A +K +
Sbjct: 111 LLLFLMDGLHEDLNKADNRKRYKEE 135
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 89.8 bits (221), Expect = 3e-22
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
G+ GLRN GNTCF+N+ILQCLS+T L +Y + Y D+ + + E+
Sbjct: 2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSN-------AHTALVEE 54
Query: 121 LAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179
A L+++IW+ S N +S ++FK I +Y ++ G NQ DAQEFL +LLD +H ++N T
Sbjct: 55 FAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVT 114
Query: 180 KKKYKTIK 187
+ +
Sbjct: 115 LRPKSNPE 122
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 81.0 bits (198), Expect = 7e-19
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 12/127 (9%)
Query: 63 IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLA 122
GL N GNTC++NA +QC+ L + +Y + + + +T L
Sbjct: 5 CGLTNLGNTCYMNATVQCIRSVPELKDAL--KRYAGALRASGEM-----ASAQYITAALR 57
Query: 123 VLLKSIWSCSYNPDISNQFKVIIDKY-----GTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177
L S+ S + + + + + Q DA E + ++ + + L
Sbjct: 58 DLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEA 117
Query: 178 ATKKKYK 184
K
Sbjct: 118 IEDDSVK 124
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 72.9 bits (177), Expect = 4e-16
Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 10/137 (7%)
Query: 63 IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLA 122
+G +N GNTC++NA LQ L + L + + + + ++ ++ ++
Sbjct: 7 VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGV---SNSGAQDEEIHKQIVIEMK 63
Query: 123 VLLKSIWSCSYNPDISNQFKVIIDKYGTQYR-------GNNQHDAQEFLMWLLDKVHEDL 175
+++ + S+ + + K Q+ Q DA+E L +
Sbjct: 64 RCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVF 123
Query: 176 NTATKKKYKTIKVKTPK 192
+ ++ T K
Sbjct: 124 GDKFSEDFRIQFKTTIK 140
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 71.7 bits (174), Expect = 1e-15
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 15/119 (12%)
Query: 58 KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEV 117
K G +GL+N G TC++N++LQ L T+ L + + + D S ++ V
Sbjct: 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKS------------V 49
Query: 118 TEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
L + + K + QHD QE LLD V +
Sbjct: 50 PLALQRVFYELQHSDKPVGTKKLTKSFGWE---TLDSFMQHDVQELCRVLLDNVENKMK 105
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 156
Score = 28.3 bits (63), Expect = 0.35
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDI 86
NG+K NH N ++NAILQ + +
Sbjct: 7 NGEKKTFYSRPNNHDN-AWLNAILQLFRYVEE 37
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 26.3 bits (56), Expect = 2.4
Identities = 19/152 (12%), Positives = 35/152 (23%), Gaps = 8/152 (5%)
Query: 38 LSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYK 97
+S+ DIR LP G +V G N G + +N + +
Sbjct: 3 MSAPDIRHLPS-----DTGIEV-AFAGRSNAGKSSALNTLTNQ--KSLARTSKTPGRTQL 54
Query: 98 IDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQ 157
I++ E + + Q +
Sbjct: 55 INLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD 114
Query: 158 HDAQEFLMWLLDKVHEDLNTATKKKYKTIKVK 189
D Q + + + K + K
Sbjct: 115 LDQQMIEWAVDSNIAVLVLLTKADKLASGARK 146
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.9 bits (55), Expect = 2.9
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 10/138 (7%)
Query: 61 GVIGLRNHGNTCFINAILQ---------CLSHTDILAEYFVLDQYKIDMSRRNKFNSKKY 111
+ G N G + +NA+ + D+L E+ +D + +
Sbjct: 5 VIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 64
Query: 112 GTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMW-LLDK 170
+ E+ ++ + D + V + ++ ++ D
Sbjct: 65 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADI 124
Query: 171 VHEDLNTATKKKYKTIKV 188
E L + + I++
Sbjct: 125 TGETLGMSEVNGHALIRL 142
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 24.7 bits (52), Expect = 6.0
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 61 GVIGLRNHGNTCFINAILQ 79
++G N G + +N +L
Sbjct: 9 AIVGKPNVGKSTLLNNLLG 27
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 25.0 bits (53), Expect = 6.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 61 GVIGLRNHGNTCFINAILQ 79
++G N G + NAIL
Sbjct: 12 AIVGRPNVGKSTLFNAILN 30
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 25.0 bits (53), Expect = 6.7
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 62 VIGLRNHGNTCFINAIL 78
+ G +N G T + +
Sbjct: 8 IAGPQNSGKTSLLTLLT 24
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 24.6 bits (52), Expect = 8.5
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 61 GVIGLRNHGNTCFINAIL 78
G++G N G + + A+
Sbjct: 5 GLVGYPNAGKSSLLAAMT 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 700,007
Number of extensions: 31477
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 22
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)