BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5642
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
GPEL + GESE VR++F +ARQ +P V+FFDELDS+A +RV+
Sbjct: 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG-AADRVIN 140
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LTEMDG+ NV I+ ATNRPD ID A+LRPGRLD+LIY+PLPD+ +R AILK L
Sbjct: 141 QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200
Query: 135 RSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKI 169
+SP+ +DV +E L ++T G+SGA+ + RA K+
Sbjct: 201 KSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 235
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
GPEL + GESE VR++F +ARQ +P V+FFDELDS+A +RV+
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG-AADRVIN 602
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LTEMDG+ NV I+ ATNRPD ID A+LRPGRLD+LIY+PLPD+ +R AILK L
Sbjct: 603 QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662
Query: 135 RSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKI 169
+SP+ +DV +E L ++T G+SGA+ + RA K+
Sbjct: 663 KSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 697
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
GPE+ K GESE +R F+ A + +P++IF DELD++A V+ R+++
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVS 326
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LT MDG+ +V ++AATNRP+ ID AL R GR DR + + +PD R IL+I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
L +DV +E++ T G+ GA+
Sbjct: 387 NMKLADDVDLEQVANETHGHVGAD 410
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
GPEL + GESE VR++F +ARQ +P V+FFDELDS+A +RV+
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG-AADRVIN 602
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LTEMDG+ NV I+ ATNRPD ID A+LRPGRLD+LIY+PLPD+ +R AILK L
Sbjct: 603 QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662
Query: 135 RSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKI 169
+SP+ +DV +E L ++T G+SGA+ + RA K+
Sbjct: 663 KSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 697
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
GPE+ K GESE +R F+ A + +P++IF DELD++A V+ R+++
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVS 326
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LT MDG+ +V ++AATNRP+ ID AL R GR DR + + +PD R IL+I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
L +DV +E++ T G+ GA+
Sbjct: 387 NMKLADDVDLEQVANETHGHVGAD 410
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 14 IGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVL 73
+G EL +K++GE V+D+FK A++ +PS+IF DE+D++A VQ R L
Sbjct: 83 VGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQ-RTL 141
Query: 74 AQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133
Q+L EMDG +V I+ ATNRPD +D A+LRPGR DR+I VP PD+ R ILKI
Sbjct: 142 MQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT 201
Query: 134 ARSPLGEDVCVEELVRLTEGYSGAE 158
+ L EDV +EE+ ++TEG GAE
Sbjct: 202 RKMNLAEDVNLEEIAKMTEGCVGAE 226
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 91/151 (60%), Gaps = 9/151 (5%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
GPEL YVGESER VR VF+RA+ +P VIFFDE+D+L + RV+
Sbjct: 77 GPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE----TGASVRVVN 132
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKI--- 131
Q+LTEMDG+ V I+AATNRPD ID A+LRPGRLD+ ++V LP R AILK
Sbjct: 133 QLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192
Query: 132 RLARSPLGEDVCVEELVR--LTEGYSGAEQS 160
+ PL DV +E + + Y+GA+ S
Sbjct: 193 NGTKPPLDADVNLEAIAGDLRCDCYTGADLS 223
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 21 KYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLAQMLTEM 80
KY+GES R +R++F A++ P +IF DE+D++ +Q R L ++LT+M
Sbjct: 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQ-RTLMELLTQM 312
Query: 81 DGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGE 140
DG L I+ ATNRPD +D ALLRPGRLDR + +PLP++ R I KI A+
Sbjct: 313 DGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTG 372
Query: 141 DVCVEELVRLTEGYSGAE 158
+ E V++++G++GA+
Sbjct: 373 EFDFEAAVKMSDGFNGAD 390
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
G + +VG VRD+F++A++ +P +IF DE+D++ +E+ L
Sbjct: 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDE-REQTLN 136
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
QML EMDG + ++AATNRPD +D ALLRPGR DR + V LPD R ILK+ +
Sbjct: 137 QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 196
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
R PL D+ + R T G+SGA+
Sbjct: 197 RVPLAPDIDAAIIARGTPGFSGAD 220
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
P+L + Y+GE + VRD F A++ +P++IF DELD++ VQ R +
Sbjct: 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQ-RTML 306
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
++L ++DG + V ++AATNR D +D ALLR GRLDR I PLP + +RA IL+I
Sbjct: 307 ELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSR 366
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
+ +D+ +EL R T+ ++GA+
Sbjct: 367 KMTTDDDINWQELARSTDEFNGAQ 390
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
G +VG VRD+F+ A++ +PS+IF DE+D++ ++ +E+ L
Sbjct: 77 GSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLN 136
Query: 75 QMLTEMDGIVPLNN-VTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133
Q+L EMDG N V ++AATNRP+ +D AL+RPGR DR + V PD R ILK+ +
Sbjct: 137 QLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196
Query: 134 ARSPLGEDVCVEELVRLTEGYSGAE 158
L DV ++E+ +LT G +GA+
Sbjct: 197 KGVKLANDVNLQEVAKLTAGLAGAD 221
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
G EL +KY+GE R VR++F AR+ +PS+IF DE+DS+ S VQ R +
Sbjct: 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ-RTML 273
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
++L ++DG N+ I+ ATNR D +D ALLRPGR+DR I P P RA IL+I
Sbjct: 274 ELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR 333
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
+ L + + ++ G SGA+
Sbjct: 334 KMNLTRGINLRKVAEKMNGCSGAD 357
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
GPE+ K GESE +R F+ A + +P++IF DELD++A V+ R+++
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVS 326
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LT MDG+ +V ++AATNRP+ ID AL R GR DR + + +PD R IL+I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
L +DV +E++ T G+ GA+
Sbjct: 387 NMKLADDVDLEQVANETHGHVGAD 410
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
GPE+ K GESE +R F+ A + +P++IF DELD++A V+ R+++
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVS 326
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LT MDG+ +V ++AATNRP+ ID AL R GR DR + + +PD R IL+I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
L +DV +E++ T G+ GA+
Sbjct: 387 NMKLADDVDLEQVANETHGHVGAD 410
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
GPE+ K GESE +R F+ A + +P++IF DELD++A V+ R+++
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVS 326
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LT MDG+ +V ++AATNRP+ ID AL R GR DR + + +PD R IL+I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
L +DV +E++ T G+ GA+
Sbjct: 387 NMKLADDVDLEQVANETHGHVGAD 410
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
GPE+ K GESE +R F+ A + +P++IF DELD++A V+ R+++
Sbjct: 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVS 326
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LT MDG+ +V ++AATNRP+ ID AL R GR DR + + +PD R IL+I
Sbjct: 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
L +DV +E++ T G+ GA+
Sbjct: 387 NMKLADDVDLEQVANETHGHVGAD 410
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
Query: 14 IGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVL 73
IG EL +KYVGE R VR++F+ AR +IFFDE+D++ + VQ R +
Sbjct: 275 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQ-RTM 333
Query: 74 AQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133
+++T++DG P N+ ++ ATNRP+ +D ALLRPGR+DR + LPD RA I +I
Sbjct: 334 LELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393
Query: 134 ARSPLGEDVCVEELVRLTEGYSGAE 158
+ + E + RL +GAE
Sbjct: 394 KSMSVERGIRWELISRLCPNSTGAE 418
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
G E KY+GE R VRDVF+ AR+ +PS+IF DE+DS+A VQ R+L
Sbjct: 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQ-RILI 297
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVP-LPDDLTRAAILKIRL 133
++LT+MDG NV ++ ATNR D +D ALLRPGRLDR I P L D R I
Sbjct: 298 ELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIA 357
Query: 134 ARSPLGEDVCVEELVRLTEGYSGA 157
++ L + ++ L+ + SGA
Sbjct: 358 SKMSLAPEADLDSLIIRNDSLSGA 381
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
G + +VG VRD+F +A+ +P ++F DE+D++ +E+ L
Sbjct: 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDE-REQTLN 140
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+L EMDG + ++AATNRPD +D ALLRPGR D+ I V PD L R IL+I
Sbjct: 141 QLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR 200
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
PL EDV +E + + T G+ GA+
Sbjct: 201 NKPLAEDVNLEIIAKRTPGFVGAD 224
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
G + +VG VRD+F +A+ +P ++F DE+D++ +E+ L
Sbjct: 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDE-REQTLN 140
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+L EMDG + ++AATNRPD +D ALLRPGR D+ I V PD L R IL+I
Sbjct: 141 QLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR 200
Query: 135 RSPLGEDVCVEELVRLTEGYSGAE 158
PL EDV +E + + T G+ GA+
Sbjct: 201 NKPLAEDVNLEIIAKRTPGFVGAD 224
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
Query: 14 IGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVL 73
+G EL +KY+G+ R R +FK A + +PS++F DE+D++ +Q R +
Sbjct: 248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQ-RTM 306
Query: 74 AQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133
++L ++DG +V ++ ATN+ + +D AL+RPGR+DR I PD T+ IL I
Sbjct: 307 LELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366
Query: 134 ARSPLGEDVCVEELVRLTEGYSGAE 158
++ L EDV +E LV + SGA+
Sbjct: 367 SKMNLSEDVNLETLVTTKDDLSGAD 391
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 11 VESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQE 70
+ + G + +VG VRD+F+ A++ +P ++F DE+D++ ++ +E
Sbjct: 102 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG-NDERE 160
Query: 71 RVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILK 130
+ L Q+L EMDG + ++AATNRPD +D ALLRPGR DR I + PD R IL+
Sbjct: 161 QTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 220
Query: 131 IRLARSPLGEDVCVEELVRLTEGYSGAE 158
I PL EDV + L + T G+ GA+
Sbjct: 221 IHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 11 VESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQE 70
+ + G + +VG VRD+F+ A++ +P ++F DE+D++ ++ +E
Sbjct: 78 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG-NDERE 136
Query: 71 RVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILK 130
+ L Q+L EMDG + ++AATNRPD +D ALLRPGR DR I + PD R IL+
Sbjct: 137 QTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 196
Query: 131 IRLARSPLGEDVCVEELVRLTEGYSGAE 158
I PL EDV + L + T G+ GA+
Sbjct: 197 IHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 11 VESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQE 70
+ + G + +VG VRD+F+ A++ +P ++F DE+D++ ++ +E
Sbjct: 102 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG-NDERE 160
Query: 71 RVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILK 130
+ L Q+L EMDG + ++AATNRPD +D ALLRPGR DR I + PD R IL+
Sbjct: 161 QTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 220
Query: 131 IRLARSPLGEDVCVEELVRLTEGYSGAE 158
I PL EDV + L + T G+ GA+
Sbjct: 221 IHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 11 VESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQE 70
+ + G + +VG VRD+F+ A++ +P ++F DE+D++ ++ +E
Sbjct: 93 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG-NDERE 151
Query: 71 RVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILK 130
+ L Q+L EMDG + ++AATNRPD +D ALLRPGR DR I + PD R IL+
Sbjct: 152 QTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 211
Query: 131 IRLARSPLGEDVCVEELVRLTEGYSGAE 158
I PL EDV + L + T G+ GA+
Sbjct: 212 IHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLA 74
G E G VR +FK AR +P +++ DE+D++ + +E+ L
Sbjct: 72 GAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLN 131
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+L EMDG+ ++V ++A+TNR D +D AL+RPGRLDR +++ LP R I + L
Sbjct: 132 QLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLK 191
Query: 135 RSPLGEDVCV--EELVRLTEGYSGAE 158
L + + L LT G+SGA+
Sbjct: 192 SLKLTQSSTFYSQRLAELTPGFSGAD 217
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 110/224 (49%), Gaps = 33/224 (14%)
Query: 18 LFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLAQML 77
L KYVG+ E+ VR +F AR + PS+IF DE+DSL R+ + L
Sbjct: 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLL----SERSSSEHEASRRLKTEFL 145
Query: 78 TEMDGIVPLN----NVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133
E DG+ P N + ++AATNRP +D+A LR R + +YV LPD+ TR +L L
Sbjct: 146 VEFDGL-PGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLL 202
Query: 134 AR--SPLGEDVCVEELVRLTEGYSGAE-QSLSKHRAKKIRPRRESNPGPPACKPSIVAVC 190
+ SPL + + L ++T+GYSG++ +L+K A + P RE N C
Sbjct: 203 QKQGSPLDTE-ALRRLAKITDGYSGSDLTALAKDAA--LEPIRELNVEQVKC-------- 251
Query: 191 DXXXXXXXXXXXXXXYVSHQDFLTALQLVKPRTPPQLIKLYENY 234
++ QDF ++L+ ++ PQ + YE +
Sbjct: 252 --------LDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 287
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 17 ELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLAQM 76
+L K++GESE+ V+++F+ AR+ PS+IF DE+DSL S R+ +
Sbjct: 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC----GSRSENESEAARRIKTEF 258
Query: 77 LTEMDGI-VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR 135
L +M G+ V + + ++ ATN P +D A+ R R ++ IY+PLP+ RAA+ ++ L
Sbjct: 259 LVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGS 316
Query: 136 SPLG-EDVCVEELVRLTEGYSGAEQSL 161
+ + +EL R T+GYSGA+ S+
Sbjct: 317 TQNSLTEADFQELGRKTDGYSGADISI 343
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 8/147 (5%)
Query: 17 ELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLAQM 76
+L K++GESE+ V+++F+ AR+ PS+IF DE+DSL S R+ +
Sbjct: 81 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC----GSRSENESEAARRIKTEF 136
Query: 77 LTEMDGI-VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR 135
L +M G+ V + + ++ ATN P +D A+ R R ++ IY+PLP+ RAA+ K+ L
Sbjct: 137 LVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGT 194
Query: 136 SPLG-EDVCVEELVRLTEGYSGAEQSL 161
+ + EL R T+GYSGA+ S+
Sbjct: 195 TQNSLTEADFRELGRKTDGYSGADISI 221
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 14/147 (9%)
Query: 17 ELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLAQM 76
+L K++GESE+ V+ +F AR+ PS+IF DE+D+L S R+ ++
Sbjct: 95 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALT----GTRGEGESEASRRIKTEL 150
Query: 77 LTEMDGIV-PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR 135
L +M+G+ V ++ ATN P ++D A+ R R +R IY+PLPD R + +I +
Sbjct: 151 LVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGD 208
Query: 136 SPLGEDVCVEELVR----LTEGYSGAE 158
+P V +E R +TEGYSG++
Sbjct: 209 TPC---VLTKEDYRTLGAMTEGYSGSD 232
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 14/147 (9%)
Query: 17 ELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLAQM 76
+L K++GESE+ V+ +F AR+ PS+IF D++D+L S R+ ++
Sbjct: 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALT----GTRGEGESEASRRIKTEL 174
Query: 77 LTEMDGIV-PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR 135
L +M+G+ V ++ ATN P ++D A+ R R +R IY+PLPD R + +I +
Sbjct: 175 LVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGD 232
Query: 136 SPLGEDVCVEELVR----LTEGYSGAE 158
+P V +E R +TEGYSG++
Sbjct: 233 TP---SVLTKEDYRTLGAMTEGYSGSD 256
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 111/224 (49%), Gaps = 30/224 (13%)
Query: 18 LFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLAQML 77
L KYVGE E+ VR +F AR++ PS+IF D++DSL + R+ + L
Sbjct: 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSL----LCERREGEHDASRRLKTEFL 239
Query: 78 TEMDGIVPLNN--VTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR 135
E DG+ + V ++ ATNRP +D+A+LR R + +YV LP++ TR +LK L +
Sbjct: 240 IEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCK 297
Query: 136 --SPLGEDVCVEELVRLTEGYSGAE-QSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDX 192
SPL + +L R+T+GYSG++ +L+K A + P RE KP V
Sbjct: 298 QGSPLTQKELA-QLARMTDGYSGSDLTALAKDAA--LGPIRE-------LKPEQV----- 342
Query: 193 XXXXXXXXXXXXXYVSHQDFLTALQLVKPRTPPQLIKLYENYIK 236
+ DF +L+ +K PQ ++ Y + K
Sbjct: 343 ----KNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNK 382
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 14/147 (9%)
Query: 17 ELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLAQM 76
+L K++GESE+ V+ +F AR+ PS+IF D++D+L S R+ ++
Sbjct: 104 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALT----GTRGEGESEASRRIKTEL 159
Query: 77 LTEMDGIV-PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR 135
L +M+G+ V ++ ATN P ++D A+ R R +R IY+PLPD R + +I +
Sbjct: 160 LVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGD 217
Query: 136 SPLGEDVCVEELVR----LTEGYSGAE 158
+P V +E R +TEGYSG++
Sbjct: 218 TPC---VLTKEDYRTLGAMTEGYSGSD 241
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 14/147 (9%)
Query: 17 ELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLAQM 76
+L K++GESE+ V+ +F AR+ PS+IF D++D+L S R+ ++
Sbjct: 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALT----GTRGEGESEASRRIKTEL 141
Query: 77 LTEMDGIV-PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR 135
L +M+G+ V ++ ATN P ++D A+ R R +R IY+PLPD R + +I +
Sbjct: 142 LVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGD 199
Query: 136 SPLGEDVCVEELVR----LTEGYSGAE 158
+P V +E R +TEGYSG++
Sbjct: 200 TPC---VLTKEDYRTLGAMTEGYSGSD 223
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 36/227 (15%)
Query: 18 LFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAXXXXXXXXXXXSNVQERVLAQML 77
L K+VGE E+ VR +F AR P+VIF DE+DSL R+ + L
Sbjct: 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL----LSQRGDGEHESSRRIKTEFL 208
Query: 78 TEMDGIVPLNN--VTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR 135
++DG + + +V ATNRP ID+A R RL + +Y+PLP+ R I+ +++
Sbjct: 209 VQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSK 266
Query: 136 SPLGEDVC-----VEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGP-PACKPSIVAV 189
E C +E++V+ ++ +SGA+ + + RE++ GP + + + +A
Sbjct: 267 ----EQCCLSEEEIEQIVQQSDAFSGADMT---------QLCREASLGPIRSLQTADIAT 313
Query: 190 CDXXXXXXXXXXXXXXYVSHQDFLTALQLVKPRTPPQLIKLYENYIK 236
+++ DF A + V+P P+ ++LYEN+ K
Sbjct: 314 ITPDQVRP---------IAYIDFENAFRTVRPSVSPKDLELYENWNK 351
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 78 TEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS 136
TE IVPL N IV + RPG L+ Y PL D T+A +++R R+
Sbjct: 183 TEYSRIVPLENGEIV--------VSLVNGRPGALN-FSYSPLLRDFTKATNIRLRFLRT 232
>pdb|2OGS|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.2
Length = 498
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 90 TIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAI 128
T +A T R +DKA +RPG +RL+ +P ++L RAA+
Sbjct: 232 TAMAMTER--ILDKAGIRPGDRERLLSIPA-EELLRAAL 267
>pdb|2OGT|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.8
Length = 498
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 90 TIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAI 128
T +A T R +DKA +RPG +RL+ +P ++L RAA+
Sbjct: 232 TAMAMTER--ILDKAGIRPGDRERLLSIPA-EELLRAAL 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,939,706
Number of Sequences: 62578
Number of extensions: 197447
Number of successful extensions: 469
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 45
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)