Query psy5642
Match_columns 237
No_of_seqs 131 out of 1646
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 22:50:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730|consensus 100.0 1E-42 2.2E-47 312.7 18.1 202 5-237 491-692 (693)
2 COG1222 RPT1 ATP-dependent 26S 100.0 3.3E-40 7.1E-45 278.9 17.2 189 3-221 206-394 (406)
3 KOG0738|consensus 100.0 5.9E-40 1.3E-44 279.4 16.6 200 5-236 268-486 (491)
4 KOG0733|consensus 100.0 4.9E-39 1.1E-43 286.3 18.9 202 4-236 567-786 (802)
5 KOG0736|consensus 100.0 2.3E-37 4.9E-42 281.3 19.1 202 6-236 729-949 (953)
6 KOG0739|consensus 100.0 2E-37 4.4E-42 256.4 14.2 224 6-236 190-433 (439)
7 KOG0733|consensus 100.0 6.3E-37 1.4E-41 272.8 15.0 226 6-235 247-520 (802)
8 TIGR01243 CDC48 AAA family ATP 100.0 3.5E-34 7.5E-39 272.2 21.4 202 6-237 511-728 (733)
9 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-33 2.6E-38 255.0 20.5 196 6-236 283-482 (489)
10 KOG0734|consensus 100.0 4.3E-34 9.3E-39 251.6 14.4 180 6-218 361-540 (752)
11 COG0464 SpoVK ATPases of the A 100.0 2.7E-32 5.8E-37 249.3 19.4 192 6-236 300-493 (494)
12 KOG0728|consensus 100.0 1.9E-32 4.2E-37 222.4 15.2 201 4-234 203-403 (404)
13 PTZ00454 26S protease regulato 100.0 2.1E-30 4.6E-35 229.3 18.2 186 6-221 203-388 (398)
14 KOG0735|consensus 100.0 7.7E-31 1.7E-35 237.3 14.9 151 4-158 723-873 (952)
15 COG1223 Predicted ATPase (AAA+ 100.0 1.5E-30 3.3E-35 212.1 14.0 184 5-222 174-358 (368)
16 KOG0737|consensus 100.0 1.3E-30 2.8E-35 221.6 13.9 184 6-222 151-362 (386)
17 PRK03992 proteasome-activating 100.0 7.3E-30 1.6E-34 226.3 18.5 190 7-226 190-379 (389)
18 KOG0731|consensus 100.0 4.8E-30 1E-34 236.9 17.1 184 6-218 368-552 (774)
19 KOG0740|consensus 100.0 2.7E-30 6E-35 226.2 13.0 199 5-236 209-421 (428)
20 COG0465 HflB ATP-dependent Zn 100.0 5.3E-30 1.1E-34 232.7 15.1 184 5-218 206-389 (596)
21 KOG0730|consensus 100.0 1.9E-29 4.2E-34 227.3 15.1 189 7-235 243-443 (693)
22 KOG0727|consensus 100.0 2E-29 4.3E-34 205.1 13.3 186 4-219 211-396 (408)
23 KOG0726|consensus 100.0 4.5E-30 9.7E-35 212.3 8.5 183 7-219 244-426 (440)
24 KOG0652|consensus 100.0 2.6E-29 5.7E-34 205.2 11.3 187 5-221 228-414 (424)
25 TIGR01241 FtsH_fam ATP-depende 100.0 1.2E-28 2.7E-33 225.0 16.8 185 6-220 112-296 (495)
26 PTZ00361 26 proteosome regulat 100.0 2.2E-28 4.8E-33 218.0 16.2 184 7-220 242-425 (438)
27 PRK10733 hflB ATP-dependent me 100.0 4.6E-28 1E-32 226.6 17.4 186 6-221 209-394 (644)
28 KOG0729|consensus 100.0 1.7E-28 3.8E-33 201.0 11.6 186 4-219 233-418 (435)
29 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.7E-28 1E-32 237.9 16.6 177 5-220 1653-1878(2281)
30 KOG0741|consensus 100.0 1.5E-28 3.3E-33 216.5 7.9 203 13-232 288-505 (744)
31 CHL00176 ftsH cell division pr 99.9 4.8E-27 1E-31 218.2 17.8 184 6-219 240-423 (638)
32 TIGR01242 26Sp45 26S proteasom 99.9 2.4E-26 5.1E-31 202.6 17.8 183 7-219 181-363 (364)
33 KOG0732|consensus 99.9 3.4E-26 7.4E-31 216.5 14.1 191 5-226 327-532 (1080)
34 PLN00020 ribulose bisphosphate 99.9 3.5E-25 7.6E-30 190.4 17.7 155 6-166 172-347 (413)
35 TIGR03689 pup_AAA proteasome A 99.9 4.1E-25 8.8E-30 199.8 17.5 204 6-218 250-477 (512)
36 KOG0651|consensus 99.9 5E-26 1.1E-30 189.6 7.4 184 7-220 191-374 (388)
37 TIGR01243 CDC48 AAA family ATP 99.9 5.3E-24 1.1E-28 202.7 18.8 189 7-226 237-442 (733)
38 KOG0735|consensus 99.8 9.7E-20 2.1E-24 165.7 15.3 189 7-224 460-653 (952)
39 KOG0736|consensus 99.8 9E-20 1.9E-24 167.1 10.9 212 4-236 453-682 (953)
40 KOG0744|consensus 99.8 3.3E-18 7E-23 143.8 10.0 133 1-135 205-342 (423)
41 PF00004 AAA: ATPase family as 99.7 1.6E-15 3.5E-20 114.1 11.5 108 7-119 23-132 (132)
42 KOG0742|consensus 99.7 1.7E-15 3.8E-20 131.1 12.9 128 24-158 425-580 (630)
43 COG0464 SpoVK ATPases of the A 99.6 7E-15 1.5E-19 134.7 16.9 182 9-222 44-229 (494)
44 KOG0743|consensus 99.4 3.2E-13 7E-18 118.6 8.5 125 30-158 277-408 (457)
45 TIGR02639 ClpA ATP-dependent C 99.4 5.1E-12 1.1E-16 120.7 14.5 140 6-158 237-388 (731)
46 CHL00181 cbbX CbbX; Provisiona 99.4 1.2E-11 2.5E-16 105.8 13.6 118 7-137 91-213 (287)
47 TIGR02881 spore_V_K stage V sp 99.4 1.5E-11 3.3E-16 103.8 13.9 129 7-149 74-208 (261)
48 PRK11034 clpA ATP-dependent Cl 99.3 4.3E-11 9.3E-16 113.9 11.9 140 6-158 241-392 (758)
49 TIGR02880 cbbX_cfxQ probable R 99.3 1.5E-10 3.3E-15 98.8 14.0 118 8-138 91-213 (284)
50 TIGR03345 VI_ClpV1 type VI sec 99.2 6.1E-10 1.3E-14 107.8 15.0 139 6-158 242-393 (852)
51 PRK10865 protein disaggregatio 99.1 1.1E-09 2.3E-14 106.3 12.7 136 7-156 234-382 (857)
52 TIGR00763 lon ATP-dependent pr 99.1 3.5E-09 7.5E-14 102.0 14.7 140 7-161 372-545 (775)
53 TIGR03346 chaperone_ClpB ATP-d 99.0 2E-09 4.2E-14 104.6 11.3 150 6-169 228-396 (852)
54 CHL00095 clpC Clp protease ATP 99.0 1.9E-09 4.2E-14 104.3 9.0 150 6-169 234-401 (821)
55 PRK00149 dnaA chromosomal repl 98.8 9.9E-08 2.2E-12 86.7 12.0 131 7-153 178-314 (450)
56 TIGR00362 DnaA chromosomal rep 98.8 1.4E-07 3.1E-12 84.5 12.9 141 7-164 166-312 (405)
57 PRK00411 cdc6 cell division co 98.7 2.3E-07 4.9E-12 82.7 13.8 138 7-159 85-248 (394)
58 TIGR02928 orc1/cdc6 family rep 98.7 1.2E-06 2.6E-11 77.2 15.6 94 27-134 114-213 (365)
59 PRK00080 ruvB Holliday junctio 98.6 7.7E-07 1.7E-11 77.6 13.2 68 88-158 150-218 (328)
60 TIGR00635 ruvB Holliday juncti 98.6 1E-06 2.2E-11 75.8 13.1 100 41-158 81-197 (305)
61 COG0466 Lon ATP-dependent Lon 98.6 3.1E-07 6.8E-12 85.3 9.5 173 20-218 397-583 (782)
62 COG0542 clpA ATP-binding subun 98.6 6.5E-07 1.4E-11 84.8 11.7 149 7-169 226-393 (786)
63 PRK14088 dnaA chromosomal repl 98.5 6.3E-07 1.4E-11 81.1 10.7 136 7-158 160-301 (440)
64 PRK10787 DNA-binding ATP-depen 98.5 2.5E-06 5.3E-11 82.2 14.7 159 21-218 397-581 (784)
65 TIGR02902 spore_lonB ATP-depen 98.5 1.2E-06 2.6E-11 81.1 11.4 95 89-217 235-330 (531)
66 PTZ00112 origin recognition co 98.5 4.5E-06 9.8E-11 79.9 15.1 148 7-171 816-987 (1164)
67 PRK14086 dnaA chromosomal repl 98.5 3.2E-06 6.9E-11 78.6 13.6 139 7-162 344-488 (617)
68 PRK12422 chromosomal replicati 98.5 2E-06 4.4E-11 77.9 11.7 129 8-152 170-304 (445)
69 PRK07003 DNA polymerase III su 98.4 7E-06 1.5E-10 77.7 12.8 122 9-156 89-215 (830)
70 PRK12323 DNA polymerase III su 98.3 8E-06 1.7E-10 76.3 11.5 120 9-154 94-218 (700)
71 TIGR02397 dnaX_nterm DNA polym 98.3 2.2E-05 4.7E-10 68.9 13.4 119 9-153 87-210 (355)
72 PRK05563 DNA polymerase III su 98.3 1.9E-05 4.2E-10 73.5 13.5 125 7-158 87-216 (559)
73 PRK05342 clpX ATP-dependent pr 98.2 3.9E-05 8.4E-10 68.8 14.4 149 7-158 133-366 (412)
74 PRK14087 dnaA chromosomal repl 98.2 2.4E-05 5.2E-10 71.1 13.0 136 6-158 170-315 (450)
75 PRK14962 DNA polymerase III su 98.2 3E-05 6.4E-10 70.8 13.3 118 9-152 87-209 (472)
76 PRK06645 DNA polymerase III su 98.2 2.8E-05 6E-10 71.4 13.0 124 8-158 97-225 (507)
77 TIGR03420 DnaA_homol_Hda DnaA 98.2 1.4E-05 3E-10 65.6 10.1 125 8-158 67-197 (226)
78 PRK14961 DNA polymerase III su 98.2 2.3E-05 4.9E-10 69.4 11.7 111 27-158 101-216 (363)
79 PRK04132 replication factor C 98.2 4.5E-05 9.8E-10 73.7 14.3 121 7-153 596-723 (846)
80 PRK07764 DNA polymerase III su 98.2 2.8E-05 6E-10 75.3 12.9 130 6-158 87-217 (824)
81 PRK04195 replication factor C 98.1 0.00014 3.1E-09 66.7 16.4 130 8-165 65-202 (482)
82 PRK12402 replication factor C 98.1 0.00015 3.3E-09 63.0 15.4 99 42-164 126-225 (337)
83 PRK14958 DNA polymerase III su 98.1 2.6E-05 5.6E-10 71.9 10.7 123 9-158 89-216 (509)
84 PRK07940 DNA polymerase III su 98.1 1.7E-05 3.8E-10 70.7 9.2 109 27-159 99-211 (394)
85 KOG2004|consensus 98.1 1.1E-05 2.5E-10 75.1 8.1 100 20-134 485-597 (906)
86 PRK14956 DNA polymerase III su 98.1 3.1E-05 6.6E-10 70.3 10.7 108 27-154 103-215 (484)
87 PRK14964 DNA polymerase III su 98.1 9.8E-05 2.1E-09 67.5 13.5 127 6-159 83-214 (491)
88 PRK13342 recombination factor 98.1 0.00021 4.6E-09 64.3 15.6 116 7-151 61-186 (413)
89 PRK08727 hypothetical protein; 98.1 9.1E-05 2E-09 61.5 12.2 106 30-152 84-195 (233)
90 PRK14960 DNA polymerase III su 98.1 6.8E-05 1.5E-09 70.3 12.4 124 8-158 87-215 (702)
91 PRK07994 DNA polymerase III su 98.0 4.9E-05 1.1E-09 71.5 10.8 122 9-156 89-215 (647)
92 PRK06893 DNA replication initi 98.0 6.9E-05 1.5E-09 62.0 10.2 99 41-152 91-194 (229)
93 TIGR00382 clpX endopeptidase C 98.0 0.00019 4.1E-09 64.3 13.6 149 7-158 141-372 (413)
94 PF09336 Vps4_C: Vps4 C termin 98.0 4.1E-06 8.9E-11 54.7 2.3 34 204-237 27-60 (62)
95 PRK14951 DNA polymerase III su 98.0 8.1E-05 1.8E-09 69.8 11.7 122 9-158 94-221 (618)
96 PRK08451 DNA polymerase III su 98.0 0.00026 5.7E-09 65.3 14.3 110 27-158 99-214 (535)
97 PF00308 Bac_DnaA: Bacterial d 97.9 1.4E-05 3.1E-10 65.7 5.3 131 6-152 63-199 (219)
98 TIGR00678 holB DNA polymerase 97.9 0.00016 3.4E-09 57.9 11.1 102 27-153 78-183 (188)
99 PRK14965 DNA polymerase III su 97.9 0.00015 3.2E-09 68.0 12.4 118 9-153 89-212 (576)
100 PHA02544 44 clamp loader, smal 97.9 0.00012 2.6E-09 63.3 11.1 104 8-133 69-173 (316)
101 TIGR03015 pepcterm_ATPase puta 97.9 0.00016 3.4E-09 60.9 11.5 85 104-220 178-267 (269)
102 COG0593 DnaA ATPase involved i 97.9 0.00022 4.7E-09 63.5 12.6 131 4-151 140-276 (408)
103 PRK14963 DNA polymerase III su 97.9 0.00033 7.2E-09 64.5 13.8 119 9-153 86-209 (504)
104 PRK08691 DNA polymerase III su 97.9 0.00021 4.5E-09 67.6 11.9 123 9-158 89-216 (709)
105 PRK14949 DNA polymerase III su 97.9 0.00047 1E-08 66.8 14.4 107 27-153 101-212 (944)
106 PRK14953 DNA polymerase III su 97.8 0.00033 7E-09 64.3 12.8 107 27-153 101-212 (486)
107 PRK05896 DNA polymerase III su 97.8 0.00045 9.7E-09 64.5 13.2 124 8-158 88-216 (605)
108 COG2256 MGS1 ATPase related to 97.8 0.00021 4.6E-09 62.8 10.4 99 6-133 72-176 (436)
109 PRK14952 DNA polymerase III su 97.8 0.00043 9.2E-09 64.8 13.1 121 6-152 85-210 (584)
110 PRK14959 DNA polymerase III su 97.8 0.00017 3.6E-09 67.6 10.2 93 41-153 119-212 (624)
111 PF05496 RuvB_N: Holliday junc 97.8 0.00012 2.7E-09 60.0 8.2 122 7-153 75-213 (233)
112 PRK06305 DNA polymerase III su 97.8 0.00091 2E-08 60.9 14.5 93 40-152 120-213 (451)
113 TIGR02903 spore_lon_C ATP-depe 97.8 0.00097 2.1E-08 63.0 15.1 59 89-150 324-384 (615)
114 PRK06647 DNA polymerase III su 97.8 0.00084 1.8E-08 62.7 14.1 111 27-158 101-216 (563)
115 PRK09111 DNA polymerase III su 97.7 0.00052 1.1E-08 64.4 12.8 123 9-158 102-229 (598)
116 PRK08903 DnaA regulatory inact 97.7 0.00039 8.4E-09 57.2 10.6 92 41-149 90-187 (227)
117 PRK13341 recombination factor 97.7 0.00047 1E-08 66.1 12.5 123 7-162 77-214 (725)
118 PRK14970 DNA polymerase III su 97.7 0.00061 1.3E-08 60.3 12.5 106 27-152 90-200 (367)
119 COG1474 CDC6 Cdc6-related prot 97.7 0.00056 1.2E-08 60.5 11.9 80 40-135 122-205 (366)
120 PRK09087 hypothetical protein; 97.7 0.00034 7.5E-09 57.8 9.8 92 43-152 89-186 (226)
121 PRK07133 DNA polymerase III su 97.7 0.0016 3.5E-08 62.1 15.2 107 27-153 100-211 (725)
122 PRK11034 clpA ATP-dependent Cl 97.7 0.00066 1.4E-08 65.4 12.6 138 8-164 514-709 (758)
123 TIGR02640 gas_vesic_GvpN gas v 97.7 0.00065 1.4E-08 57.4 11.2 75 41-133 105-198 (262)
124 PRK14969 DNA polymerase III su 97.7 0.0005 1.1E-08 63.8 11.3 119 9-153 89-212 (527)
125 PRK05642 DNA replication initi 97.7 0.00077 1.7E-08 56.0 11.4 95 43-152 99-199 (234)
126 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00082 1.8E-08 61.7 12.3 121 28-166 65-189 (489)
127 PRK08084 DNA replication initi 97.6 0.00042 9E-09 57.6 9.4 95 43-152 99-200 (235)
128 PRK13407 bchI magnesium chelat 97.6 0.0016 3.4E-08 57.0 13.3 147 43-217 130-304 (334)
129 PLN03025 replication factor C 97.6 0.00053 1.1E-08 59.6 10.3 92 41-152 99-191 (319)
130 PRK00440 rfc replication facto 97.6 0.00059 1.3E-08 58.8 10.6 91 42-152 103-194 (319)
131 PRK14957 DNA polymerase III su 97.6 0.0015 3.2E-08 60.7 13.5 105 28-152 102-211 (546)
132 PRK05707 DNA polymerase III su 97.6 0.00064 1.4E-08 59.3 10.5 104 27-153 88-195 (328)
133 TIGR02639 ClpA ATP-dependent C 97.6 0.0015 3.2E-08 63.1 13.4 132 8-158 510-699 (731)
134 KOG1514|consensus 97.6 0.00091 2E-08 62.6 11.3 149 41-229 508-665 (767)
135 PRK09112 DNA polymerase III su 97.5 0.00062 1.4E-08 59.9 9.5 93 41-154 141-233 (351)
136 TIGR00390 hslU ATP-dependent p 97.5 0.0014 3E-08 58.6 11.7 84 41-129 247-342 (441)
137 KOG0741|consensus 97.5 0.00053 1.1E-08 62.4 9.0 119 5-130 561-683 (744)
138 PRK14948 DNA polymerase III su 97.5 0.004 8.6E-08 58.9 15.1 109 25-153 101-214 (620)
139 cd00009 AAA The AAA+ (ATPases 97.5 0.00035 7.6E-09 52.1 6.7 95 7-118 47-150 (151)
140 PRK05201 hslU ATP-dependent pr 97.5 0.0015 3.3E-08 58.5 11.5 84 41-129 249-344 (443)
141 TIGR02030 BchI-ChlI magnesium 97.5 0.0029 6.2E-08 55.4 13.1 148 42-217 132-307 (337)
142 smart00350 MCM minichromosome 97.4 0.0029 6.3E-08 58.5 13.2 160 42-220 301-505 (509)
143 KOG2028|consensus 97.4 0.0039 8.4E-08 54.6 12.5 97 9-134 192-295 (554)
144 PRK07471 DNA polymerase III su 97.4 0.0015 3.3E-08 57.8 10.3 103 28-153 124-230 (365)
145 COG2812 DnaX DNA polymerase II 97.4 0.00069 1.5E-08 62.1 8.3 138 6-170 86-228 (515)
146 PRK14950 DNA polymerase III su 97.4 0.0033 7.2E-08 59.1 12.9 111 27-158 102-217 (585)
147 PRK06620 hypothetical protein; 97.3 0.0024 5.2E-08 52.3 9.9 89 42-151 86-179 (214)
148 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0027 5.9E-08 62.2 11.7 132 7-158 624-818 (852)
149 KOG0989|consensus 97.3 0.0021 4.6E-08 54.8 9.5 125 9-153 90-222 (346)
150 PRK06964 DNA polymerase III su 97.3 0.00072 1.6E-08 59.3 6.8 86 27-132 114-203 (342)
151 PF01637 Arch_ATPase: Archaeal 97.3 0.002 4.3E-08 52.4 9.1 119 24-155 100-228 (234)
152 COG1220 HslU ATP-dependent pro 97.3 0.0019 4.1E-08 55.9 8.8 97 27-130 238-346 (444)
153 PRK06871 DNA polymerase III su 97.3 0.0031 6.6E-08 54.9 10.3 86 27-132 89-178 (325)
154 CHL00081 chlI Mg-protoporyphyr 97.2 0.0078 1.7E-07 52.9 12.8 148 42-217 145-320 (350)
155 PRK14954 DNA polymerase III su 97.2 0.0096 2.1E-07 56.2 14.0 107 27-153 109-220 (620)
156 COG2255 RuvB Holliday junction 97.2 0.0095 2.1E-07 50.5 12.3 96 42-154 104-216 (332)
157 PRK07993 DNA polymerase III su 97.2 0.0028 6.1E-08 55.4 9.5 85 27-131 90-178 (334)
158 PRK14955 DNA polymerase III su 97.2 0.0039 8.3E-08 55.9 10.4 107 27-153 109-220 (397)
159 PF05621 TniB: Bacterial TniB 97.1 0.0052 1.1E-07 52.6 10.4 151 28-222 132-291 (302)
160 COG1224 TIP49 DNA helicase TIP 97.1 0.011 2.4E-07 51.6 11.6 160 25-233 274-447 (450)
161 TIGR03346 chaperone_ClpB ATP-d 97.0 0.017 3.8E-07 56.7 14.2 109 7-134 623-777 (852)
162 TIGR01650 PD_CobS cobaltochela 97.0 0.0026 5.7E-08 55.2 7.4 114 7-135 89-235 (327)
163 PRK08769 DNA polymerase III su 97.0 0.0071 1.5E-07 52.6 9.7 106 26-156 94-203 (319)
164 TIGR00764 lon_rel lon-related 97.0 0.0051 1.1E-07 58.1 9.5 115 88-221 268-393 (608)
165 PRK06090 DNA polymerase III su 96.9 0.0049 1.1E-07 53.5 8.4 85 27-131 90-178 (319)
166 PRK14971 DNA polymerase III su 96.9 0.014 3E-07 55.2 11.6 107 27-153 103-214 (614)
167 CHL00095 clpC Clp protease ATP 96.8 0.027 5.9E-07 55.2 13.7 110 7-135 567-734 (821)
168 TIGR02031 BchD-ChlD magnesium 96.8 0.013 2.9E-07 55.1 11.2 149 43-219 86-258 (589)
169 COG0714 MoxR-like ATPases [Gen 96.8 0.0041 8.9E-08 54.2 7.0 74 43-133 114-203 (329)
170 PRK05564 DNA polymerase III su 96.8 0.013 2.7E-07 50.8 9.9 104 27-153 75-182 (313)
171 PF05673 DUF815: Protein of un 96.7 0.045 9.8E-07 45.6 11.9 129 7-158 80-237 (249)
172 PRK11331 5-methylcytosine-spec 96.7 0.0097 2.1E-07 53.8 8.4 74 29-119 258-357 (459)
173 TIGR02442 Cob-chelat-sub cobal 96.5 0.049 1.1E-06 51.8 12.3 75 43-134 128-215 (633)
174 smart00382 AAA ATPases associa 96.5 0.021 4.5E-07 41.8 8.0 87 23-120 60-147 (148)
175 KOG2680|consensus 96.4 0.13 2.7E-06 44.3 13.2 143 41-232 288-443 (454)
176 PRK10865 protein disaggregatio 96.3 0.041 9E-07 54.1 11.3 109 7-135 626-781 (857)
177 PRK07399 DNA polymerase III su 96.3 0.017 3.7E-07 50.2 7.7 104 28-154 107-214 (314)
178 COG1239 ChlI Mg-chelatase subu 96.3 0.057 1.2E-06 48.2 10.9 90 42-149 145-247 (423)
179 PRK08058 DNA polymerase III su 96.3 0.016 3.5E-07 50.6 7.4 85 27-131 92-180 (329)
180 PHA02244 ATPase-like protein 96.2 0.038 8.2E-07 48.9 9.4 64 41-122 180-263 (383)
181 KOG1051|consensus 96.2 0.03 6.5E-07 54.6 9.1 116 7-136 245-366 (898)
182 PF13177 DNA_pol3_delta2: DNA 96.2 0.015 3.3E-07 45.4 6.0 74 27-120 84-161 (162)
183 PRK06581 DNA polymerase III su 96.1 0.048 1E-06 45.4 8.7 92 26-137 70-165 (263)
184 KOG2227|consensus 96.0 0.025 5.5E-07 51.0 7.3 111 42-167 257-373 (529)
185 PRK07276 DNA polymerase III su 96.0 0.033 7.1E-07 47.8 7.6 82 27-129 86-171 (290)
186 COG0470 HolB ATPase involved i 95.9 0.022 4.8E-07 49.0 6.6 102 7-130 73-178 (325)
187 KOG2035|consensus 95.7 0.11 2.3E-06 44.2 9.2 124 11-158 92-225 (351)
188 PRK13531 regulatory ATPase Rav 95.5 0.33 7.2E-06 44.5 12.4 149 43-213 109-278 (498)
189 COG2607 Predicted ATPase (AAA+ 95.4 0.33 7.1E-06 40.5 11.1 129 7-158 113-269 (287)
190 PRK08485 DNA polymerase III su 95.4 0.1 2.3E-06 42.1 7.9 106 26-151 38-157 (206)
191 PF07724 AAA_2: AAA domain (Cd 95.2 0.066 1.4E-06 42.3 6.3 93 6-104 31-136 (171)
192 PRK08699 DNA polymerase III su 95.2 0.068 1.5E-06 46.6 7.0 86 26-131 94-183 (325)
193 KOG0745|consensus 95.1 0.061 1.3E-06 48.3 6.4 110 7-120 251-386 (564)
194 KOG1942|consensus 95.1 0.34 7.3E-06 41.6 10.5 113 18-151 272-399 (456)
195 PF07728 AAA_5: AAA domain (dy 95.1 0.023 4.9E-07 42.8 3.2 54 41-111 65-139 (139)
196 PRK13406 bchD magnesium chelat 94.9 0.53 1.2E-05 44.4 12.3 66 42-124 94-173 (584)
197 PRK05917 DNA polymerase III su 94.8 0.21 4.4E-06 42.9 8.6 74 27-120 77-154 (290)
198 COG3267 ExeA Type II secretory 94.7 1.1 2.4E-05 37.6 12.3 140 27-210 116-264 (269)
199 TIGR00368 Mg chelatase-related 94.7 0.5 1.1E-05 43.7 11.4 65 42-123 296-394 (499)
200 COG0542 clpA ATP-binding subun 94.7 0.21 4.5E-06 48.3 9.0 105 37-158 589-742 (786)
201 PRK09862 putative ATP-dependen 94.5 0.77 1.7E-05 42.5 12.2 65 42-123 295-391 (506)
202 PF05729 NACHT: NACHT domain 94.4 0.33 7.2E-06 36.9 8.4 86 38-135 78-165 (166)
203 PF06068 TIP49: TIP49 C-termin 94.3 0.15 3.4E-06 45.0 6.8 89 41-150 278-379 (398)
204 KOG2228|consensus 93.8 0.37 8E-06 42.1 8.0 99 21-134 112-220 (408)
205 PF05707 Zot: Zonular occluden 93.7 0.13 2.9E-06 41.2 5.0 68 41-120 79-146 (193)
206 COG4565 CitB Response regulato 93.6 2 4.3E-05 35.1 11.4 150 28-219 33-186 (224)
207 PF13304 AAA_21: AAA domain; P 93.0 0.2 4.3E-06 40.5 5.2 66 22-102 236-303 (303)
208 TIGR02915 PEP_resp_reg putativ 92.8 0.14 3.1E-06 46.3 4.4 69 41-127 233-317 (445)
209 PRK07132 DNA polymerase III su 92.8 0.31 6.7E-06 42.0 6.1 84 28-131 72-160 (299)
210 PRK11388 DNA-binding transcrip 92.7 0.54 1.2E-05 44.8 8.3 106 5-134 374-511 (638)
211 TIGR01817 nifA Nif-specific re 92.7 0.54 1.2E-05 43.8 8.1 105 6-134 246-385 (534)
212 PRK10365 transcriptional regul 92.6 0.1 2.2E-06 47.1 3.1 105 5-134 188-328 (441)
213 TIGR01818 ntrC nitrogen regula 92.6 0.17 3.7E-06 46.0 4.6 106 6-134 184-323 (463)
214 PF12846 AAA_10: AAA-like doma 92.6 0.49 1.1E-05 39.8 7.1 109 7-133 178-299 (304)
215 PRK05818 DNA polymerase III su 92.3 0.65 1.4E-05 39.1 7.3 59 42-120 89-147 (261)
216 PF07693 KAP_NTPase: KAP famil 92.2 1.2 2.6E-05 38.4 9.1 80 40-135 171-265 (325)
217 KOG1969|consensus 92.0 3.8 8.2E-05 39.5 12.5 128 5-152 349-501 (877)
218 TIGR02974 phageshock_pspF psp 91.8 0.53 1.1E-05 41.1 6.5 108 6-134 49-188 (329)
219 COG1067 LonB Predicted ATP-dep 91.7 2.8 6.1E-05 40.0 11.5 112 89-222 277-402 (647)
220 PF00931 NB-ARC: NB-ARC domain 91.7 1.3 2.8E-05 37.2 8.7 104 27-154 88-195 (287)
221 PRK15115 response regulator Gl 91.6 0.41 8.9E-06 43.3 5.8 105 6-134 184-323 (444)
222 PF00158 Sigma54_activat: Sigm 91.4 2.1 4.7E-05 33.5 9.0 85 5-113 48-156 (168)
223 PRK10820 DNA-binding transcrip 90.9 1.2 2.7E-05 41.4 8.3 101 5-126 253-381 (520)
224 COG1221 PspF Transcriptional r 90.9 0.59 1.3E-05 41.9 5.8 106 6-134 129-265 (403)
225 TIGR00602 rad24 checkpoint pro 90.9 3.6 7.7E-05 39.3 11.3 119 26-163 170-321 (637)
226 PRK13765 ATP-dependent proteas 90.6 4.7 0.0001 38.6 11.9 127 88-231 277-411 (637)
227 PF00493 MCM: MCM2/3/5 family 90.2 0.77 1.7E-05 40.2 6.0 78 42-136 122-224 (331)
228 PRK05022 anaerobic nitric oxid 89.8 4 8.6E-05 37.9 10.6 75 6-98 237-332 (509)
229 COG1219 ClpX ATP-dependent pro 89.7 1.5 3.3E-05 38.2 7.0 75 7-83 122-203 (408)
230 PRK10923 glnG nitrogen regulat 89.5 1.1 2.4E-05 40.9 6.7 106 5-134 187-327 (469)
231 PRK11608 pspF phage shock prot 89.5 1.8 3.8E-05 37.8 7.7 108 6-133 56-194 (326)
232 PF13173 AAA_14: AAA domain 89.2 0.62 1.4E-05 34.5 4.1 64 41-124 61-126 (128)
233 PF14516 AAA_35: AAA-like doma 88.5 4 8.7E-05 35.6 9.2 102 40-155 126-233 (331)
234 PRK14700 recombination factor 88.1 2.1 4.6E-05 36.8 6.9 67 85-158 5-80 (300)
235 PF14532 Sigma54_activ_2: Sigm 87.5 1.1 2.3E-05 33.7 4.4 80 7-118 49-136 (138)
236 PF07726 AAA_3: ATPase family 87.0 0.98 2.1E-05 33.9 3.8 52 43-111 64-129 (131)
237 COG2204 AtoC Response regulato 86.7 2.7 5.9E-05 38.4 7.2 98 5-127 190-319 (464)
238 PTZ00111 DNA replication licen 86.3 2.5 5.4E-05 41.8 7.1 75 42-133 558-657 (915)
239 PRK08116 hypothetical protein; 85.9 1.2 2.5E-05 37.8 4.2 98 7-122 142-251 (268)
240 PRK07452 DNA polymerase III su 83.6 28 0.00061 30.0 13.6 107 30-152 46-163 (326)
241 KOG1051|consensus 83.5 4 8.6E-05 40.4 7.1 77 4-97 616-710 (898)
242 TIGR01128 holA DNA polymerase 83.3 26 0.00057 29.5 14.0 95 41-152 46-144 (302)
243 PRK11361 acetoacetate metaboli 82.7 2.8 6E-05 38.0 5.5 68 42-127 238-321 (457)
244 PRK04841 transcriptional regul 82.6 17 0.00038 35.8 11.4 109 28-157 107-221 (903)
245 KOG1968|consensus 81.9 9.8 0.00021 37.7 9.1 96 44-161 431-527 (871)
246 COG2874 FlaH Predicted ATPases 81.9 2.3 5.1E-05 34.8 4.1 91 5-111 88-178 (235)
247 smart00763 AAA_PrkA PrkA AAA d 81.8 5 0.00011 35.5 6.5 75 43-135 238-329 (361)
248 KOG0478|consensus 81.6 27 0.00058 33.7 11.4 47 88-136 569-629 (804)
249 PF13401 AAA_22: AAA domain; P 81.4 5.7 0.00012 28.9 6.0 53 27-95 73-125 (131)
250 PRK15429 formate hydrogenlyase 81.3 7.1 0.00015 37.6 8.0 107 6-134 426-565 (686)
251 PF12775 AAA_7: P-loop contain 81.2 4.1 8.9E-05 34.6 5.7 85 41-135 100-195 (272)
252 PRK05574 holA DNA polymerase I 81.1 35 0.00076 29.4 18.1 121 30-169 61-192 (340)
253 PRK15424 propionate catabolism 80.9 2.2 4.8E-05 39.9 4.2 111 4-135 275-418 (538)
254 KOG0990|consensus 80.2 5.8 0.00013 34.6 6.1 89 28-136 111-206 (360)
255 TIGR02329 propionate_PrpR prop 79.0 4.9 0.00011 37.5 5.9 46 5-53 261-319 (526)
256 PF12774 AAA_6: Hydrolytic ATP 77.6 20 0.00043 29.7 8.5 102 7-130 57-177 (231)
257 PHA00012 I assembly protein 77.4 3.3 7.2E-05 36.2 3.9 57 41-107 81-137 (361)
258 PLN03210 Resistant to P. syrin 77.2 27 0.00058 36.0 11.0 92 40-155 295-389 (1153)
259 PF01078 Mg_chelatase: Magnesi 76.5 3.6 7.7E-05 33.5 3.7 65 42-123 107-205 (206)
260 cd01120 RecA-like_NTPases RecA 75.6 8.1 0.00018 28.8 5.4 65 31-100 75-139 (165)
261 KOG0482|consensus 74.4 4.2 9.1E-05 37.7 3.9 129 88-220 482-639 (721)
262 COG2909 MalT ATP-dependent tra 74.0 25 0.00053 34.7 9.1 112 27-158 114-230 (894)
263 COG1106 Predicted ATPases [Gen 73.2 4.9 0.00011 35.7 4.0 70 24-107 253-322 (371)
264 KOG2383|consensus 73.1 5.5 0.00012 35.8 4.2 77 42-145 194-271 (467)
265 COG3829 RocR Transcriptional r 73.0 1.6 3.5E-05 40.4 1.0 109 5-134 294-435 (560)
266 PRK13539 cytochrome c biogenes 72.4 21 0.00045 28.6 7.3 67 33-122 137-203 (207)
267 PF05872 DUF853: Bacterial pro 71.0 6 0.00013 36.1 4.1 82 27-120 236-324 (502)
268 COG1241 MCM2 Predicted ATPase 70.9 8.6 0.00019 37.0 5.3 47 88-136 426-486 (682)
269 KOG0732|consensus 70.8 2.5 5.3E-05 42.4 1.7 98 16-135 627-728 (1080)
270 cd01124 KaiC KaiC is a circadi 68.8 45 0.00097 25.7 8.4 26 30-55 84-109 (187)
271 PRK13898 type IV secretion sys 67.8 23 0.0005 34.9 7.8 99 8-123 607-713 (800)
272 PF03969 AFG1_ATPase: AFG1-lik 67.2 7.7 0.00017 34.4 4.0 43 43-101 129-172 (362)
273 TIGR02237 recomb_radB DNA repa 66.0 10 0.00022 30.4 4.2 66 28-97 84-149 (209)
274 cd03216 ABC_Carb_Monos_I This 64.9 24 0.00053 27.1 6.0 58 30-102 89-146 (163)
275 PRK09183 transposase/IS protei 64.1 9.1 0.0002 32.2 3.7 44 9-53 132-176 (259)
276 PRK13695 putative NTPase; Prov 63.7 37 0.00081 26.2 7.0 71 41-133 96-169 (174)
277 PRK13541 cytochrome c biogenes 61.6 54 0.0012 25.8 7.7 57 33-104 133-189 (195)
278 PF04465 DUF499: Protein of un 59.8 1.9E+02 0.0042 29.5 12.4 26 27-56 89-114 (1035)
279 PF09820 AAA-ATPase_like: Pred 59.8 48 0.001 28.2 7.4 121 27-157 127-264 (284)
280 COG1485 Predicted ATPase [Gene 59.2 10 0.00022 33.5 3.2 43 43-101 132-175 (367)
281 PF07034 ORC3_N: Origin recogn 59.0 35 0.00076 29.8 6.5 77 41-135 199-281 (330)
282 KOG0480|consensus 58.1 53 0.0012 31.5 7.7 46 88-135 485-544 (764)
283 PRK13543 cytochrome c biogenes 58.0 49 0.0011 26.6 6.9 57 32-103 146-202 (214)
284 COG1066 Sms Predicted ATP-depe 57.9 58 0.0013 29.6 7.6 88 26-117 153-241 (456)
285 COG1121 ZnuC ABC-type Mn/Zn tr 57.6 62 0.0013 27.3 7.5 59 28-101 144-202 (254)
286 TIGR01166 cbiO cobalt transpor 57.3 62 0.0013 25.3 7.3 18 33-50 137-154 (190)
287 PRK13538 cytochrome c biogenes 56.9 55 0.0012 26.0 7.0 56 33-103 139-194 (204)
288 COG1134 TagH ABC-type polysacc 56.5 25 0.00054 29.4 4.9 28 26-53 150-177 (249)
289 PRK13540 cytochrome c biogenes 56.5 60 0.0013 25.7 7.1 59 30-103 134-192 (200)
290 PF13175 AAA_15: AAA ATPase do 56.3 28 0.00061 30.7 5.7 42 44-99 372-413 (415)
291 COG4555 NatA ABC-type Na+ tran 56.1 32 0.0007 28.3 5.3 51 36-101 146-196 (245)
292 COG1119 ModF ABC-type molybden 55.9 54 0.0012 27.6 6.7 63 31-107 179-242 (257)
293 cd01121 Sms Sms (bacterial rad 55.4 19 0.00042 32.0 4.4 28 29-56 146-173 (372)
294 TIGR02858 spore_III_AA stage I 54.6 41 0.0009 28.5 6.1 65 31-118 184-256 (270)
295 cd03231 ABC_CcmA_heme_exporter 54.4 71 0.0015 25.3 7.2 56 33-103 135-190 (201)
296 COG1131 CcmA ABC-type multidru 54.0 39 0.00085 28.9 6.0 71 17-103 132-202 (293)
297 PF13481 AAA_25: AAA domain; P 53.5 12 0.00026 29.3 2.5 30 27-56 126-156 (193)
298 PF10923 DUF2791: P-loop Domai 53.4 84 0.0018 28.5 8.1 126 28-161 224-381 (416)
299 PRK13873 conjugal transfer ATP 53.3 30 0.00065 34.1 5.7 98 7-121 599-704 (811)
300 PF13654 AAA_32: AAA domain; P 52.5 16 0.00035 34.0 3.5 108 88-219 388-506 (509)
301 cd03283 ABC_MutS-like MutS-lik 51.9 36 0.00077 27.3 5.1 61 28-102 92-152 (199)
302 COG3899 Predicted ATPase [Gene 51.9 2.6E+02 0.0057 28.0 14.0 116 36-168 149-266 (849)
303 cd03262 ABC_HisP_GlnQ_permease 51.8 51 0.0011 26.2 6.0 53 34-101 146-198 (213)
304 COG4619 ABC-type uncharacteriz 51.5 46 0.001 26.6 5.3 72 26-119 137-209 (223)
305 PRK07952 DNA replication prote 51.0 29 0.00062 29.0 4.5 75 8-98 128-205 (244)
306 PF04665 Pox_A32: Poxvirus A32 51.0 76 0.0016 26.5 7.0 74 41-134 98-171 (241)
307 cd03215 ABC_Carb_Monos_II This 51.0 54 0.0012 25.6 5.9 54 33-101 114-167 (182)
308 TIGR03740 galliderm_ABC gallid 50.5 55 0.0012 26.4 6.1 56 32-102 133-188 (223)
309 cd03218 ABC_YhbG The ABC trans 50.5 53 0.0012 26.5 6.1 54 33-101 143-196 (232)
310 smart00487 DEXDc DEAD-like hel 50.4 24 0.00053 26.8 3.9 63 42-121 130-192 (201)
311 cd03287 ABC_MSH3_euk MutS3 hom 50.3 46 0.00099 27.3 5.6 60 27-101 98-157 (222)
312 cd03226 ABC_cobalt_CbiO_domain 50.3 53 0.0011 26.1 5.9 54 33-101 136-189 (205)
313 PRK06526 transposase; Provisio 50.2 21 0.00046 29.9 3.6 14 41-54 159-172 (254)
314 COG4598 HisP ABC-type histidin 50.0 36 0.00077 27.5 4.6 55 27-95 156-210 (256)
315 KOG0479|consensus 50.0 31 0.00066 32.8 4.8 62 42-117 399-481 (818)
316 cd03292 ABC_FtsE_transporter F 50.0 58 0.0013 25.9 6.1 54 33-101 146-199 (214)
317 TIGR00960 3a0501s02 Type II (G 49.9 57 0.0012 26.1 6.1 54 33-101 148-201 (216)
318 KOG1576|consensus 49.7 1.7E+02 0.0037 25.2 8.9 153 12-201 108-267 (342)
319 PRK10263 DNA translocase FtsK; 49.0 29 0.00062 36.0 4.8 74 43-130 1142-1217(1355)
320 COG3604 FhlA Transcriptional r 48.9 13 0.00028 34.4 2.2 90 5-112 272-379 (550)
321 PRK13537 nodulation ABC transp 48.7 58 0.0012 28.0 6.2 56 33-103 148-203 (306)
322 PRK13643 cbiO cobalt transport 48.7 52 0.0011 27.9 5.9 57 31-102 152-208 (288)
323 COG1117 PstB ABC-type phosphat 48.6 81 0.0018 26.2 6.5 55 27-96 153-207 (253)
324 COG1116 TauB ABC-type nitrate/ 48.2 34 0.00074 28.7 4.4 21 29-49 136-156 (248)
325 PF06144 DNA_pol3_delta: DNA p 48.1 30 0.00066 26.4 4.0 96 42-151 58-156 (172)
326 cd03266 ABC_NatA_sodium_export 48.1 63 0.0014 25.8 6.1 55 32-101 145-199 (218)
327 cd03225 ABC_cobalt_CbiO_domain 48.0 59 0.0013 25.8 5.9 54 33-101 144-197 (211)
328 cd03233 ABC_PDR_domain1 The pl 48.0 72 0.0016 25.4 6.3 18 33-50 128-145 (202)
329 PRK08181 transposase; Validate 48.0 15 0.00033 31.1 2.4 74 8-98 135-209 (269)
330 TIGR02673 FtsE cell division A 48.0 63 0.0014 25.7 6.0 54 33-101 147-200 (214)
331 PRK11231 fecE iron-dicitrate t 47.4 62 0.0013 26.7 6.1 54 34-102 149-202 (255)
332 COG1618 Predicted nucleotide k 47.3 65 0.0014 25.4 5.6 84 29-135 89-174 (179)
333 PF05272 VirE: Virulence-assoc 47.2 33 0.00072 27.6 4.2 42 88-132 140-192 (198)
334 PF00488 MutS_V: MutS domain V 47.0 59 0.0013 26.8 5.8 59 27-100 110-168 (235)
335 PRK13830 conjugal transfer pro 46.6 48 0.001 32.8 6.0 98 9-122 617-722 (818)
336 TIGR02012 tigrfam_recA protein 46.5 37 0.00081 29.6 4.7 71 26-96 118-190 (321)
337 cd01394 radB RadB. The archaea 46.1 62 0.0013 25.9 5.7 90 29-121 92-188 (218)
338 PF05763 DUF835: Protein of un 46.0 31 0.00067 26.1 3.6 31 26-56 56-90 (136)
339 PRK10619 histidine/lysine/argi 46.0 66 0.0014 26.6 6.0 55 33-102 162-216 (257)
340 KOG3928|consensus 45.8 2.3E+02 0.005 25.9 9.4 129 26-158 295-452 (461)
341 cd03235 ABC_Metallic_Cations A 45.8 78 0.0017 25.2 6.2 17 34-50 143-159 (213)
342 TIGR01189 ccmA heme ABC export 45.7 1.3E+02 0.0029 23.6 7.5 54 33-101 137-190 (198)
343 cd03298 ABC_ThiQ_thiamine_tran 45.7 32 0.0007 27.4 4.0 20 33-52 138-157 (211)
344 cd03268 ABC_BcrA_bacitracin_re 45.1 74 0.0016 25.2 6.0 54 33-101 136-189 (208)
345 cd03246 ABCC_Protease_Secretio 45.1 86 0.0019 24.1 6.2 22 30-51 103-124 (173)
346 cd03228 ABCC_MRP_Like The MRP 45.0 1.1E+02 0.0023 23.6 6.7 54 33-102 106-159 (171)
347 TIGR00390 hslU ATP-dependent p 44.9 13 0.00028 33.8 1.6 61 7-78 72-134 (441)
348 KOG3423|consensus 44.7 1.5E+02 0.0033 23.2 7.6 81 123-219 71-165 (176)
349 cd01125 repA Hexameric Replica 44.6 50 0.0011 27.0 5.1 28 26-53 96-123 (239)
350 PRK11614 livF leucine/isoleuci 44.6 71 0.0015 26.0 5.9 18 34-51 148-165 (237)
351 PRK10908 cell division protein 44.3 79 0.0017 25.4 6.1 55 33-102 147-201 (222)
352 cd03276 ABC_SMC6_euk Eukaryoti 44.3 86 0.0019 25.0 6.2 53 39-103 129-181 (198)
353 PRK09361 radB DNA repair and r 44.3 22 0.00047 28.8 2.8 85 40-126 106-197 (225)
354 COG1373 Predicted ATPase (AAA+ 44.3 1.9E+02 0.0041 25.9 9.0 68 41-127 94-161 (398)
355 cd03267 ABC_NatA_like Similar 44.1 45 0.00097 27.3 4.7 54 34-101 164-217 (236)
356 cd03269 ABC_putative_ATPase Th 44.1 74 0.0016 25.3 5.9 54 33-101 138-191 (210)
357 PRK11264 putative amino-acid A 44.1 74 0.0016 26.1 6.0 53 34-101 155-207 (250)
358 PRK06067 flagellar accessory p 43.4 66 0.0014 26.2 5.6 29 26-54 105-133 (234)
359 TIGR01978 sufC FeS assembly AT 43.2 81 0.0018 25.6 6.1 56 32-102 153-208 (243)
360 TIGR03608 L_ocin_972_ABC putat 43.2 1.2E+02 0.0026 23.9 6.9 52 33-99 144-195 (206)
361 TIGR01277 thiQ thiamine ABC tr 43.1 38 0.00083 27.1 4.0 19 34-52 139-157 (213)
362 cd01122 GP4d_helicase GP4d_hel 43.0 35 0.00075 28.4 3.9 63 27-95 126-188 (271)
363 PRK09580 sufC cysteine desulfu 42.6 91 0.002 25.5 6.3 55 32-101 154-208 (248)
364 COG1136 SalX ABC-type antimicr 42.5 93 0.002 25.7 6.1 71 27-118 146-216 (226)
365 PF03215 Rad17: Rad17 cell cyc 42.5 2.7E+02 0.0058 26.1 9.8 98 41-152 132-254 (519)
366 TIGR03864 PQQ_ABC_ATP ABC tran 42.4 55 0.0012 26.6 4.9 57 32-102 141-197 (236)
367 TIGR01188 drrA daunorubicin re 42.4 80 0.0017 26.9 6.1 55 33-102 134-188 (302)
368 PRK15056 manganese/iron transp 42.1 87 0.0019 26.2 6.2 51 36-101 155-205 (272)
369 CHL00131 ycf16 sulfate ABC tra 42.1 97 0.0021 25.4 6.4 54 33-101 161-214 (252)
370 PRK13649 cbiO cobalt transport 41.9 77 0.0017 26.6 5.9 55 32-101 154-208 (280)
371 PHA00520 packaging NTPase P4 41.9 1E+02 0.0022 26.6 6.4 54 41-97 183-236 (330)
372 cd03232 ABC_PDR_domain2 The pl 41.5 1.5E+02 0.0032 23.3 7.2 20 33-52 118-137 (192)
373 cd03219 ABC_Mj1267_LivG_branch 41.3 91 0.002 25.2 6.1 54 33-101 153-206 (236)
374 PRK10895 lipopolysaccharide AB 41.2 88 0.0019 25.5 6.0 54 33-101 147-200 (241)
375 cd00983 recA RecA is a bacter 41.0 54 0.0012 28.7 4.8 71 26-96 118-190 (325)
376 PRK09493 glnQ glutamine ABC tr 41.0 94 0.002 25.3 6.1 55 33-102 146-200 (240)
377 cd03213 ABCG_EPDR ABCG transpo 41.0 1.7E+02 0.0036 23.0 7.4 21 32-52 120-140 (194)
378 PF13872 AAA_34: P-loop contai 40.8 60 0.0013 28.1 4.9 71 25-102 156-228 (303)
379 PRK10869 recombination and rep 40.7 1.9E+02 0.0041 27.3 8.7 90 23-135 432-536 (553)
380 PRK13644 cbiO cobalt transport 40.6 95 0.0021 26.1 6.2 54 33-101 146-199 (274)
381 TIGR03873 F420-0_ABC_ATP propo 40.5 97 0.0021 25.5 6.2 55 33-102 147-201 (256)
382 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 40.4 95 0.0021 25.1 6.0 55 33-102 152-206 (224)
383 cd01393 recA_like RecA is a b 40.4 47 0.001 26.7 4.2 56 39-96 112-167 (226)
384 PRK13853 type IV secretion sys 40.3 1E+02 0.0023 30.4 7.2 97 9-122 593-697 (789)
385 cd03263 ABC_subfamily_A The AB 40.2 1.1E+02 0.0023 24.5 6.2 54 33-102 143-196 (220)
386 PRK13652 cbiO cobalt transport 40.1 39 0.00084 28.5 3.8 60 30-103 144-203 (277)
387 PRK13638 cbiO cobalt transport 39.9 90 0.002 26.1 6.0 55 33-102 146-200 (271)
388 COG3950 Predicted ATP-binding 39.9 47 0.001 29.6 4.1 47 41-97 295-344 (440)
389 cd03227 ABC_Class2 ABC-type Cl 39.7 66 0.0014 24.6 4.7 46 41-101 99-144 (162)
390 PRK11629 lolD lipoprotein tran 39.6 52 0.0011 26.7 4.4 55 33-101 155-209 (233)
391 PRK13641 cbiO cobalt transport 39.4 94 0.002 26.3 6.0 56 31-101 153-208 (287)
392 PRK11300 livG leucine/isoleuci 39.3 49 0.0011 27.2 4.2 56 33-102 163-218 (255)
393 TIGR03411 urea_trans_UrtD urea 39.3 1E+02 0.0022 25.1 6.1 55 32-102 152-206 (242)
394 PRK10253 iron-enterobactin tra 39.2 51 0.0011 27.5 4.3 56 33-102 153-208 (265)
395 cd03230 ABC_DR_subfamily_A Thi 39.1 56 0.0012 25.2 4.3 22 31-52 103-124 (173)
396 cd03256 ABC_PhnC_transporter A 39.0 49 0.0011 26.9 4.2 55 34-102 155-209 (241)
397 TIGR00929 VirB4_CagE type IV s 39.0 1.2E+02 0.0025 29.7 7.3 95 10-121 596-698 (785)
398 cd03255 ABC_MJ0796_Lo1CDE_FtsE 39.0 54 0.0012 26.2 4.3 55 33-101 150-204 (218)
399 TIGR02746 TraC-F-type type-IV 38.6 69 0.0015 31.4 5.7 74 40-128 636-714 (797)
400 TIGR01288 nodI ATP-binding ABC 38.5 97 0.0021 26.4 6.0 55 33-102 145-199 (303)
401 PRK11124 artP arginine transpo 38.4 1E+02 0.0022 25.1 6.0 53 34-101 152-204 (242)
402 cd00984 DnaB_C DnaB helicase C 38.4 61 0.0013 26.3 4.6 52 37-95 119-170 (242)
403 PRK09519 recA DNA recombinatio 38.3 61 0.0013 32.0 5.1 69 27-95 124-194 (790)
404 PRK13536 nodulation factor exp 38.3 99 0.0021 27.1 6.1 55 34-103 183-237 (340)
405 PRK14260 phosphate ABC transpo 38.2 1.2E+02 0.0025 25.2 6.3 56 32-103 159-214 (259)
406 cd03260 ABC_PstB_phosphate_tra 38.2 1.2E+02 0.0026 24.4 6.3 53 33-101 151-203 (227)
407 PRK09984 phosphonate/organopho 38.1 50 0.0011 27.4 4.1 56 33-102 162-217 (262)
408 PRK11823 DNA repair protein Ra 38.1 53 0.0011 30.0 4.5 28 29-56 144-171 (446)
409 PRK08533 flagellar accessory p 38.0 98 0.0021 25.4 5.7 28 27-54 103-130 (230)
410 PRK13634 cbiO cobalt transport 37.8 49 0.0011 28.1 4.0 58 31-102 153-210 (290)
411 PRK09694 helicase Cas3; Provis 37.8 43 0.00093 33.5 4.1 48 39-101 437-484 (878)
412 cd03224 ABC_TM1139_LivF_branch 37.7 1E+02 0.0023 24.6 5.9 52 34-100 143-194 (222)
413 PF11796 DUF3323: Protein of u 37.6 1.5E+02 0.0033 24.0 6.8 56 109-165 1-61 (215)
414 PRK13645 cbiO cobalt transport 37.6 45 0.00098 28.2 3.8 55 33-101 160-214 (289)
415 cd00561 CobA_CobO_BtuR ATP:cor 37.5 1.4E+02 0.0031 23.1 6.2 73 27-118 77-153 (159)
416 TIGR03771 anch_rpt_ABC anchore 37.4 1.1E+02 0.0024 24.7 5.9 51 36-101 126-176 (223)
417 PRK14243 phosphate transporter 37.4 1.2E+02 0.0026 25.3 6.3 54 33-102 161-214 (264)
418 cd03286 ABC_MSH6_euk MutS6 hom 37.3 78 0.0017 25.8 5.0 63 27-104 97-159 (218)
419 TIGR03005 ectoine_ehuA ectoine 37.0 57 0.0012 26.9 4.2 54 34-101 157-210 (252)
420 PRK11701 phnK phosphonate C-P 36.9 59 0.0013 26.9 4.4 56 33-102 161-216 (258)
421 PRK13631 cbiO cobalt transport 36.9 1E+02 0.0022 26.7 5.9 58 29-101 182-239 (320)
422 PRK14253 phosphate ABC transpo 36.9 1.2E+02 0.0026 24.8 6.2 54 33-102 155-208 (249)
423 TIGR02770 nickel_nikD nickel i 36.9 55 0.0012 26.6 4.1 54 34-101 136-189 (230)
424 PRK10419 nikE nickel transport 36.8 48 0.001 27.8 3.8 58 31-102 159-216 (268)
425 PRK13546 teichoic acids export 36.7 1.1E+02 0.0023 25.7 5.9 55 33-102 153-207 (264)
426 PF06745 KaiC: KaiC; InterPro 36.7 2E+02 0.0043 23.1 7.4 61 25-96 99-159 (226)
427 PRK15112 antimicrobial peptide 36.7 52 0.0011 27.5 4.0 55 33-101 159-213 (267)
428 cd03257 ABC_NikE_OppD_transpor 36.5 52 0.0011 26.4 3.9 55 33-101 155-209 (228)
429 cd03214 ABC_Iron-Siderophores_ 36.5 64 0.0014 25.1 4.3 56 32-101 106-161 (180)
430 cd03240 ABC_Rad50 The catalyti 36.3 57 0.0012 26.1 4.0 20 33-52 131-150 (204)
431 KOG0991|consensus 36.3 2.4E+02 0.0051 23.9 7.5 101 11-134 82-186 (333)
432 cd03293 ABC_NrtD_SsuB_transpor 36.3 56 0.0012 26.2 4.0 55 33-101 141-195 (220)
433 PRK05201 hslU ATP-dependent pr 36.2 23 0.00049 32.3 1.8 37 7-43 75-113 (443)
434 cd03282 ABC_MSH4_euk MutS4 hom 36.2 95 0.0021 25.0 5.3 58 29-102 98-155 (204)
435 TIGR02315 ABC_phnC phosphonate 36.1 61 0.0013 26.4 4.3 54 34-101 156-209 (243)
436 COG1126 GlnQ ABC-type polar am 36.0 84 0.0018 26.1 4.8 54 27-94 140-193 (240)
437 cd03265 ABC_DrrA DrrA is the A 36.0 62 0.0014 26.0 4.3 56 33-102 141-196 (220)
438 cd03217 ABC_FeS_Assembly ABC-t 35.8 1.3E+02 0.0028 23.8 6.0 20 31-50 112-131 (200)
439 PF05361 PP1_inhibitor: PKC-ac 35.8 59 0.0013 24.8 3.7 40 116-155 79-118 (144)
440 cd03296 ABC_CysA_sulfate_impor 35.7 55 0.0012 26.7 3.9 53 34-100 147-199 (239)
441 cd03301 ABC_MalK_N The N-termi 35.6 54 0.0012 26.1 3.8 54 33-100 140-193 (213)
442 cd03264 ABC_drug_resistance_li 35.6 1.4E+02 0.003 23.7 6.2 54 32-101 139-192 (211)
443 PRK13648 cbiO cobalt transport 35.6 89 0.0019 26.1 5.2 55 33-101 152-206 (269)
444 PRK14266 phosphate ABC transpo 35.5 1.4E+02 0.003 24.5 6.3 56 32-103 155-210 (250)
445 PHA00350 putative assembly pro 35.4 41 0.00089 30.3 3.3 71 41-114 81-159 (399)
446 PRK10575 iron-hydroxamate tran 35.4 66 0.0014 26.8 4.4 57 31-101 155-211 (265)
447 smart00534 MUTSac ATPase domai 35.3 1.2E+02 0.0026 23.7 5.7 47 40-99 77-123 (185)
448 cd03297 ABC_ModC_molybdenum_tr 35.1 57 0.0012 26.1 3.9 55 33-101 141-195 (214)
449 PRK13632 cbiO cobalt transport 35.1 84 0.0018 26.3 5.0 55 33-101 152-206 (271)
450 PRK10418 nikD nickel transport 35.1 57 0.0012 26.9 4.0 56 33-102 150-205 (254)
451 PRK09544 znuC high-affinity zi 34.6 64 0.0014 26.8 4.2 57 32-102 129-185 (251)
452 TIGR02324 CP_lyasePhnL phospho 34.6 1.3E+02 0.0029 24.0 6.0 19 33-51 159-177 (224)
453 COG1127 Ttg2A ABC-type transpo 34.6 1.4E+02 0.0031 25.1 6.0 55 31-99 153-207 (263)
454 cd03247 ABCC_cytochrome_bd The 34.4 1.2E+02 0.0027 23.3 5.6 23 30-52 105-127 (178)
455 cd03290 ABCC_SUR1_N The SUR do 34.4 1.9E+02 0.004 23.1 6.8 57 31-101 148-205 (218)
456 cd03259 ABC_Carb_Solutes_like 34.4 62 0.0013 25.8 4.0 19 33-51 140-158 (213)
457 cd03245 ABCC_bacteriocin_expor 34.3 2E+02 0.0042 22.9 7.0 21 30-50 147-167 (220)
458 PRK10771 thiQ thiamine transpo 34.3 65 0.0014 26.1 4.1 55 34-102 140-194 (232)
459 TIGR01618 phage_P_loop phage n 34.1 86 0.0019 25.7 4.7 67 29-95 67-142 (220)
460 TIGR03522 GldA_ABC_ATP gliding 34.0 1.4E+02 0.0031 25.4 6.4 56 32-103 142-197 (301)
461 TIGR02323 CP_lyasePhnK phospho 34.0 62 0.0013 26.6 4.0 56 33-102 158-213 (253)
462 PRK14245 phosphate ABC transpo 33.9 1.4E+02 0.0031 24.4 6.2 54 33-102 156-209 (250)
463 COG1674 FtsK DNA segregation A 33.8 37 0.00081 33.8 3.0 75 42-130 640-715 (858)
464 COG4098 comFA Superfamily II D 33.8 49 0.0011 29.4 3.3 49 43-106 204-252 (441)
465 TIGR01184 ntrCD nitrate transp 33.8 65 0.0014 26.2 4.1 54 33-100 124-177 (230)
466 cd03229 ABC_Class3 This class 33.8 71 0.0015 24.7 4.1 57 31-101 108-164 (178)
467 PRK14261 phosphate ABC transpo 33.8 1.4E+02 0.0031 24.5 6.2 53 34-102 160-212 (253)
468 PRK14240 phosphate transporter 33.7 1.5E+02 0.0032 24.3 6.2 56 30-101 153-208 (250)
469 PF10236 DAP3: Mitochondrial r 33.6 3.1E+02 0.0068 23.6 12.1 111 28-138 140-282 (309)
470 cd03251 ABCC_MsbA MsbA is an e 33.5 1.8E+02 0.0039 23.4 6.6 55 31-101 146-200 (234)
471 PRK13647 cbiO cobalt transport 33.5 1.4E+02 0.003 25.0 6.1 57 31-102 146-202 (274)
472 cd03253 ABCC_ATM1_transporter 33.5 1.3E+02 0.0027 24.4 5.7 55 31-101 145-199 (236)
473 cd03295 ABC_OpuCA_Osmoprotecti 33.4 57 0.0012 26.7 3.7 55 33-101 145-199 (242)
474 cd03238 ABC_UvrA The excision 33.4 1.3E+02 0.0029 23.5 5.6 23 30-52 94-118 (176)
475 cd00267 ABC_ATPase ABC (ATP-bi 33.2 79 0.0017 23.8 4.2 20 33-52 90-109 (157)
476 PRK13635 cbiO cobalt transport 33.2 77 0.0017 26.7 4.5 57 31-101 148-204 (279)
477 PRK13639 cbiO cobalt transport 33.0 1.4E+02 0.0031 24.9 6.2 56 32-102 146-201 (275)
478 PRK11153 metN DL-methionine tr 33.0 65 0.0014 28.2 4.1 56 32-101 149-204 (343)
479 TIGR02211 LolD_lipo_ex lipopro 32.7 81 0.0018 25.2 4.4 54 33-100 151-204 (221)
480 PRK14272 phosphate ABC transpo 32.6 1.6E+02 0.0035 24.0 6.3 56 31-102 156-211 (252)
481 cd03244 ABCC_MRP_domain2 Domai 32.6 1.8E+02 0.004 23.1 6.5 55 31-101 147-201 (221)
482 PRK13646 cbiO cobalt transport 32.4 66 0.0014 27.2 4.0 59 30-102 152-210 (286)
483 KOG0481|consensus 32.3 53 0.0011 30.8 3.4 38 87-126 470-520 (729)
484 cd03241 ABC_RecN RecN ATPase i 32.3 2.7E+02 0.0059 23.3 7.7 73 41-133 192-274 (276)
485 PF02969 TAF: TATA box binding 32.2 1.2E+02 0.0025 19.9 4.2 30 186-217 37-66 (66)
486 PRK14259 phosphate ABC transpo 32.2 1.6E+02 0.0036 24.5 6.3 53 33-101 164-216 (269)
487 PRK14237 phosphate transporter 32.1 1.6E+02 0.0035 24.5 6.3 55 32-102 172-226 (267)
488 PRK14275 phosphate ABC transpo 32.1 1.5E+02 0.0033 25.0 6.2 55 32-102 191-245 (286)
489 TIGR00611 recf recF protein. A 32.1 2.3E+02 0.005 25.1 7.5 53 41-112 302-354 (365)
490 PRK05907 hypothetical protein; 32.1 3.4E+02 0.0073 23.5 10.4 77 73-151 86-166 (311)
491 PRK14242 phosphate transporter 32.1 1.5E+02 0.0033 24.3 6.1 54 33-102 159-212 (253)
492 PRK06585 holA DNA polymerase I 32.1 3.3E+02 0.0072 23.5 10.5 40 113-152 135-175 (343)
493 PRK10744 pstB phosphate transp 31.9 1.6E+02 0.0035 24.3 6.2 53 33-101 166-218 (260)
494 cd03249 ABC_MTABC3_MDL1_MDL2 M 31.9 1.4E+02 0.003 24.2 5.7 20 33-52 149-168 (238)
495 cd03300 ABC_PotA_N PotA is an 31.4 69 0.0015 26.0 3.8 57 31-101 138-194 (232)
496 PRK13651 cobalt transporter AT 31.4 1.3E+02 0.0029 25.8 5.7 22 31-52 173-194 (305)
497 PRK14256 phosphate ABC transpo 31.2 1.5E+02 0.0032 24.4 5.9 56 31-102 156-211 (252)
498 PRK14250 phosphate ABC transpo 31.1 78 0.0017 25.9 4.1 57 32-102 140-196 (241)
499 TIGR02314 ABC_MetN D-methionin 31.0 76 0.0017 27.9 4.2 57 31-101 148-204 (343)
500 COG1118 CysA ABC-type sulfate/ 31.0 72 0.0016 27.9 3.9 59 27-99 141-199 (345)
No 1
>KOG0730|consensus
Probab=100.00 E-value=1e-42 Score=312.66 Aligned_cols=202 Identities=56% Similarity=0.898 Sum_probs=193.8
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
-+.++|+.|++.+|+++|+|++++.++++|++|++.+||||||||||+++..|+++.. ....|++++||++||++.
T Consensus 491 e~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~----~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 491 EAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS----GVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred hhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc----chHHHHHHHHHHHccccc
Confidence 4678999999999999999999999999999999999999999999999999974442 667999999999999999
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhH
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
...+|+|||+||+|+.||+|++||||||+.|+||+||.+.|.+||+.+++++++.+++|+.+||++|+||||+|
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAe------ 640 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAE------ 640 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHH------
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCHHHHHHHHHHhhC
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQLIKLYENYIKK 237 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~~~~~~~~~~~~~ 237 (237)
|.++|++|...++++......|+.++|.+|++..+|+.+...++.|++|.++
T Consensus 641 ---------------------l~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 641 ---------------------IVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ---------------------HHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999864
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-40 Score=278.93 Aligned_cols=189 Identities=43% Similarity=0.724 Sum_probs=177.3
Q ss_pred cCCCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 3 DLGGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 3 ~~~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
+...++.||.|.+|+|..+|+|++.+.+|++|..|+.++||||||||||++..+|-+++.++ +.-.++++-+||++||+
T Consensus 206 A~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~g-DrEVQRTmleLL~qlDG 284 (406)
T COG1222 206 ANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSG-DREVQRTMLELLNQLDG 284 (406)
T ss_pred HhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCc-hHHHHHHHHHHHHhccC
Confidence 35678999999999999999999999999999999999999999999999999998877654 44567889999999999
Q ss_pred CCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccch
Q psy5642 83 IVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLS 162 (237)
Q Consensus 83 ~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~ 162 (237)
+...++|-||++||+++-|||||+||||||+.|+||+|+.+.|.+||+.|.+++.+..+++|+.||..|+|+||+|
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAd---- 360 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGAD---- 360 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCC
Q psy5642 163 KHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 163 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p 221 (237)
|+++|.+|.+.++++. ...|+++||..|.+.+..
T Consensus 361 -----------------------lkaictEAGm~AiR~~--R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 361 -----------------------LKAICTEAGMFAIRER--RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred -----------------------HHHHHHHHhHHHHHhc--cCeecHHHHHHHHHHHHh
Confidence 9999999999999987 567999999999886543
No 3
>KOG0738|consensus
Probab=100.00 E-value=5.9e-40 Score=279.37 Aligned_cols=200 Identities=40% Similarity=0.622 Sum_probs=184.8
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
-|+..|++|+.+.|.|||-|++++.+|-+|+.|+.++|++|||||||+|+..|+.++ ..+.++++.++||.+||++.
T Consensus 268 Ec~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~---EHEaSRRvKsELLvQmDG~~ 344 (491)
T KOG0738|consen 268 ECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS---EHEASRRVKSELLVQMDGVQ 344 (491)
T ss_pred hhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc---chhHHHHHHHHHHHHhhccc
Confidence 367899999999999999999999999999999999999999999999999998875 46778999999999999986
Q ss_pred CC-CC---EEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCccccc
Q psy5642 85 PL-NN---VTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQS 160 (237)
Q Consensus 85 ~~-~~---v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~ 160 (237)
.. .+ |+|+|+||.||+||+|++| ||.+.|++|+|+.+.|..+|+..++..+...++++..||.+++||||+|
T Consensus 345 ~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaD-- 420 (491)
T KOG0738|consen 345 GTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGAD-- 420 (491)
T ss_pred cccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHH--
Confidence 52 23 9999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred chhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccc---------------cCCccHHHHHHHHhhcCCCCCH
Q psy5642 161 LSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLE---------------AAYVSHQDFLTALQLVKPRTPP 225 (237)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~---------------~~~v~~~df~~al~~~~p~~~~ 225 (237)
|.++|++|.+..+++... ..+|+..||+.|++..+|+++.
T Consensus 421 -------------------------I~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~ 475 (491)
T KOG0738|consen 421 -------------------------ITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSA 475 (491)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCH
Confidence 999999999988875321 2479999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy5642 226 QLIKLYENYIK 236 (237)
Q Consensus 226 ~~~~~~~~~~~ 236 (237)
.++.+|++|-.
T Consensus 476 ~d~~k~ekW~~ 486 (491)
T KOG0738|consen 476 ADLEKYEKWMD 486 (491)
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 4
>KOG0733|consensus
Probab=100.00 E-value=4.9e-39 Score=286.26 Aligned_cols=202 Identities=46% Similarity=0.727 Sum_probs=182.5
Q ss_pred CCCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 4 LGGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 4 ~~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
+-+++.||.|++.+|+++|+|++++.+|.+|.+|+..+||||||||+|+|++.|+... ++...+++++||++||++
T Consensus 567 NEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~----s~~s~RvvNqLLtElDGl 642 (802)
T KOG0733|consen 567 NEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG----SSVSSRVVNQLLTELDGL 642 (802)
T ss_pred hhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC----chhHHHHHHHHHHHhccc
Confidence 4467899999999999999999999999999999999999999999999999998776 345589999999999999
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHc--CCCCCchhhHHHHHHHCC--CCCcccc
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA--RSPLGEDVCVEELVRLTE--GYSGAEQ 159 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~--~~~~~~~~~~~~la~~t~--g~s~~Dl 159 (237)
..+.+|+|||+||+|+-||||++||||||+.++++.|+.++|.+||+.+++ +.++..++|+++||..+. ||||+|
T Consensus 643 ~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGAD- 721 (802)
T KOG0733|consen 643 EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGAD- 721 (802)
T ss_pred ccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhh-
Confidence 988899999999999999999999999999999999999999999999999 777889999999999877 999999
Q ss_pred cchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccc--------------cCCccHHHHHHHHhhcCCCCCH
Q psy5642 160 SLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLE--------------AAYVSHQDFLTALQLVKPRTPP 225 (237)
Q Consensus 160 ~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~--------------~~~v~~~df~~al~~~~p~~~~ 225 (237)
|..+|++|.+.++++... ...++..+|.+|++.++|+++.
T Consensus 722 --------------------------LaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~ 775 (802)
T KOG0733|consen 722 --------------------------LAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSE 775 (802)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccH
Confidence 777887777777654321 2247888999999999999999
Q ss_pred HHHHHHHHHhh
Q psy5642 226 QLIKLYENYIK 236 (237)
Q Consensus 226 ~~~~~~~~~~~ 236 (237)
++-..|..-.|
T Consensus 776 ~dr~~Yd~l~k 786 (802)
T KOG0733|consen 776 RDRKKYDRLNK 786 (802)
T ss_pred HHHHHHHHHhh
Confidence 99999886554
No 5
>KOG0736|consensus
Probab=100.00 E-value=2.3e-37 Score=281.34 Aligned_cols=202 Identities=40% Similarity=0.671 Sum_probs=186.1
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
+.+.|+.|++.+|.+.|+|++++|+|++|++|+..+||||||||+|.++++|+.+++++ ..-.|++++||.+||++..
T Consensus 729 csL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG--GVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 729 CSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG--GVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred ceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc--ccHHHHHHHHHHHhhcccC
Confidence 56889999999999999999999999999999999999999999999999999988754 4567999999999999985
Q ss_pred --CCCEEEEEEeCCCCccchhccCCCCcccEEEecCC-CHHHHHHHHHHHHcCCCCCchhhHHHHHHHCC-CCCcccccc
Q psy5642 86 --LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP-DDLTRAAILKIRLARSPLGEDVCVEELVRLTE-GYSGAEQSL 161 (237)
Q Consensus 86 --~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P-~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~-g~s~~Dl~~ 161 (237)
...|+|||+||+|+.|||+|+||||||+.++++.+ +.+.+..+|+...++..+++++++.++|++|+ .|||+|
T Consensus 807 ~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGAD--- 883 (953)
T KOG0736|consen 807 SSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGAD--- 883 (953)
T ss_pred CCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhH---
Confidence 44699999999999999999999999999999998 77899999999999999999999999999996 899999
Q ss_pred hhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc---------------ccCCccHHHHHHHHhhcCCCCCHH
Q psy5642 162 SKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL---------------EAAYVSHQDFLTALQLVKPRTPPQ 226 (237)
Q Consensus 162 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~---------------~~~~v~~~df~~al~~~~p~~~~~ 226 (237)
+.++|.+|.+.|+++.. ....|+++||.+|+++++|+.|++
T Consensus 884 ------------------------lYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~ 939 (953)
T KOG0736|consen 884 ------------------------LYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQ 939 (953)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHH
Confidence 99999999998887632 134799999999999999999999
Q ss_pred HHHHHHHHhh
Q psy5642 227 LIKLYENYIK 236 (237)
Q Consensus 227 ~~~~~~~~~~ 236 (237)
++..|+..+.
T Consensus 940 EL~~ye~vr~ 949 (953)
T KOG0736|consen 940 ELLRYEMVRA 949 (953)
T ss_pred HHHHHHHHHH
Confidence 9999998664
No 6
>KOG0739|consensus
Probab=100.00 E-value=2e-37 Score=256.37 Aligned_cols=224 Identities=31% Similarity=0.511 Sum_probs=194.4
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
++..|+.|+.|+|.++|+|++++.++.+|+.|+.+.|+||||||||.+|..|+.+. ++.++++..+||.+|++.-.
T Consensus 190 AnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE----seasRRIKTEfLVQMqGVG~ 265 (439)
T KOG0739|consen 190 ANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE----SEASRRIKTEFLVQMQGVGN 265 (439)
T ss_pred cCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc----hHHHHHHHHHHHHhhhcccc
Confidence 46889999999999999999999999999999999999999999999999887765 56779999999999999865
Q ss_pred C-CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchh
Q psy5642 86 L-NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSK 163 (237)
Q Consensus 86 ~-~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~ 163 (237)
+ .+|+|+|+||.||.+|.+|+| ||++.|++|+|+...|..+++.++...+.. .+.|+.+|+.+|+||||+||+.++
T Consensus 266 d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivV 343 (439)
T KOG0739|consen 266 DNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVV 343 (439)
T ss_pred CCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEe
Confidence 3 469999999999999999999 999999999999999999999999888766 889999999999999999999998
Q ss_pred HHhhhhccccCC------------------CCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCH
Q psy5642 164 HRAKKIRPRRES------------------NPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPP 225 (237)
Q Consensus 164 ~~a~~~~~~~~~------------------~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~ 225 (237)
+.|+- .+.|.. .+--.+|.++....+++..+.-..+.+-+++||+.||..+|...+|++..
T Consensus 344 rDalm-ePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~ 422 (439)
T KOG0739|consen 344 RDALM-EPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNE 422 (439)
T ss_pred hhhhh-hhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCH
Confidence 77752 122211 12234566666666666666655566667899999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy5642 226 QLIKLYENYIK 236 (237)
Q Consensus 226 ~~~~~~~~~~~ 236 (237)
.++.+.++|++
T Consensus 423 ~Dl~k~~~Ft~ 433 (439)
T KOG0739|consen 423 DDLLKHEKFTE 433 (439)
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 7
>KOG0733|consensus
Probab=100.00 E-value=6.3e-37 Score=272.84 Aligned_cols=226 Identities=29% Similarity=0.448 Sum_probs=187.8
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
..+||+.|.+.++.+.+.|+++++|+++|+.|+.++|||+||||||++.++|...+ .+..++++.+|++.||++..
T Consensus 247 l~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq----reMErRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 247 LGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ----REMERRIVAQLLTSMDELSN 322 (802)
T ss_pred cCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHH----HHHHHHHHHHHHHhhhcccc
Confidence 46899999999999999999999999999999999999999999999999987744 57789999999999999865
Q ss_pred C----CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccc
Q psy5642 86 L----NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSL 161 (237)
Q Consensus 86 ~----~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~ 161 (237)
. .+|+|||+||+|+.||++|||+||||+.|.+..|+..+|++||+.+.+++.+..++++.+||..|+||+|+||+.
T Consensus 323 ~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~A 402 (802)
T KOG0733|consen 323 EKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMA 402 (802)
T ss_pred cccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHH
Confidence 4 469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhccccCCCCCCC---CC---ch-----------------------hHHHHHHHHHHHHHH----hccccCCcc
Q psy5642 162 SKHRAKKIRPRRESNPGPP---AC---KP-----------------------SIVAVCDEAALSALE----NNLEAAYVS 208 (237)
Q Consensus 162 ~~~~a~~~~~~~~~~~~~~---~~---~~-----------------------~i~~~~~~a~~~~~~----~~~~~~~v~ 208 (237)
++..|...+..|..+.... .. +. .+.++++++..+... +......|+
T Consensus 403 L~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~ 482 (802)
T KOG0733|consen 403 LCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIK 482 (802)
T ss_pred HHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceec
Confidence 9999998888877542110 00 00 122333333322211 223356799
Q ss_pred HHHHHHHHhhcCCC-----------CCHHHHHHHHHHh
Q psy5642 209 HQDFLTALQLVKPR-----------TPPQLIKLYENYI 235 (237)
Q Consensus 209 ~~df~~al~~~~p~-----------~~~~~~~~~~~~~ 235 (237)
.+||..|+..++|+ ++|++++.+++.+
T Consensus 483 ~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR 520 (802)
T KOG0733|consen 483 FEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVR 520 (802)
T ss_pred HHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHH
Confidence 99999999999987 4556666665544
No 8
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.5e-34 Score=272.22 Aligned_cols=202 Identities=49% Similarity=0.809 Sum_probs=182.0
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+++|+.+++++++++|+|+++++++.+|..|+..+||||||||+|.+++.++.... .....++++.|+..|+++..
T Consensus 511 ~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~---~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 511 SGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD---TSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred cCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC---ccHHHHHHHHHHHHhhcccC
Confidence 457899999999999999999999999999999999999999999999998765432 23557899999999999888
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
.++++||+|||+|+.||++++||||||..|++++|+.++|.+||+.++++.++..++++..+|..|+||||+|
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgad------- 660 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGAD------- 660 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHH-------
Confidence 7899999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc----------------ccCCccHHHHHHHHhhcCCCCCHHHHH
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL----------------EAAYVSHQDFLTALQLVKPRTPPQLIK 229 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~----------------~~~~v~~~df~~al~~~~p~~~~~~~~ 229 (237)
|.++|++|...++.+.. ....|+.+||..|++.++|++++++++
T Consensus 661 --------------------i~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~ 720 (733)
T TIGR01243 661 --------------------IEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDML 720 (733)
T ss_pred --------------------HHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHH
Confidence 77777777776665321 124799999999999999999999999
Q ss_pred HHHHHhhC
Q psy5642 230 LYENYIKK 237 (237)
Q Consensus 230 ~~~~~~~~ 237 (237)
.|++|.++
T Consensus 721 ~~~~~~~~ 728 (733)
T TIGR01243 721 RYERLAKE 728 (733)
T ss_pred HHHHHHHH
Confidence 99999863
No 9
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.2e-33 Score=255.02 Aligned_cols=196 Identities=29% Similarity=0.395 Sum_probs=175.7
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+++|+.+++++++++|+|+++++++.+|..|+.++||||||||+|.++..+...++ +....++++.|+.+|++ .
T Consensus 283 ~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d---~~~~~rvl~~lL~~l~~--~ 357 (489)
T CHL00195 283 WQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD---SGTTNRVLATFITWLSE--K 357 (489)
T ss_pred hCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCC---chHHHHHHHHHHHHHhc--C
Confidence 367899999999999999999999999999999999999999999999876543322 34557899999999986 4
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC--chhhHHHHHHHCCCCCcccccchh
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG--EDVCVEELVRLTEGYSGAEQSLSK 163 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~--~~~~~~~la~~t~g~s~~Dl~~~~ 163 (237)
..+|+||||||+++.||++++|+||||..++++.|+.++|.+||+.++.+.... .+.++..+|..|+||||+|
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAd----- 432 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAE----- 432 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHH-----
Confidence 468999999999999999999999999999999999999999999999886533 5789999999999999999
Q ss_pred HHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCC--CCHHHHHHHHHHhh
Q psy5642 164 HRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPR--TPPQLIKLYENYIK 236 (237)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~--~~~~~~~~~~~~~~ 236 (237)
|.++|.+|...+..++ .+++.+||..|++.+.|. +..+.++.+++|..
T Consensus 433 ----------------------I~~lv~eA~~~A~~~~---~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~ 482 (489)
T CHL00195 433 ----------------------IEQSIIEAMYIAFYEK---REFTTDDILLALKQFIPLAQTEKEQIEALQNWAS 482 (489)
T ss_pred ----------------------HHHHHHHHHHHHHHcC---CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHH
Confidence 9999999988887665 569999999999999998 58899999999986
No 10
>KOG0734|consensus
Probab=100.00 E-value=4.3e-34 Score=251.57 Aligned_cols=180 Identities=37% Similarity=0.586 Sum_probs=168.9
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
++.||+...+|++--.|+|.+.+.+|++|..|++.+||||||||||++..+|..... -..+.++++||..||++..
T Consensus 361 A~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~----~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 361 AGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ----HYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred cCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH----HHHHHHHHHHHHHhcCcCc
Confidence 578999999999999999999999999999999999999999999999999877653 2668999999999999999
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
+.+|+|||+||.|+.+|+||.||||||.+|.+|.||...|.+||+.|+.+.+...++|+.-||.-|.||+|+|
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAd------- 509 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGAD------- 509 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhh
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQL 218 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~ 218 (237)
|+++++.|+..+..++ ...|++.+++-|-..
T Consensus 510 --------------------LaNlVNqAAlkAa~dg--a~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 510 --------------------LANLVNQAALKAAVDG--AEMVTMKHLEFAKDR 540 (752)
T ss_pred --------------------HHHHHHHHHHHHHhcC--cccccHHHHhhhhhh
Confidence 9999999999999888 456889999887543
No 11
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-32 Score=249.28 Aligned_cols=192 Identities=51% Similarity=0.812 Sum_probs=176.7
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+.+|+.++++++.++|+|+++++++.+|..|+..+||||||||+|.+++.+..+... ...+++++++.+|+++..
T Consensus 300 ~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~----~~~r~~~~lL~~~d~~e~ 375 (494)
T COG0464 300 SRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG----SGRRVVGQLLTELDGIEK 375 (494)
T ss_pred CCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch----HHHHHHHHHHHHhcCCCc
Confidence 4789999999999999999999999999999999999999999999999998765532 226999999999999999
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCC--CchhhHHHHHHHCCCCCcccccchh
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPL--GEDVCVEELVRLTEGYSGAEQSLSK 163 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~--~~~~~~~~la~~t~g~s~~Dl~~~~ 163 (237)
..+|+||++||.|+.+|++++||||||..++|++|+..+|.+||+.++..... ..+.++..++..|+||+|+|
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgad----- 450 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGAD----- 450 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHH-----
Confidence 88999999999999999999999999999999999999999999999985543 47899999999999999999
Q ss_pred HHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCHHHHHHHHHHhh
Q psy5642 164 HRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQLIKLYENYIK 236 (237)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~~~~~~~~~~~~ 236 (237)
|.++|++|...+..+.. ...++.+||..|++..+|++. |++| +
T Consensus 451 ----------------------i~~i~~ea~~~~~~~~~-~~~~~~~~~~~a~~~~~p~~~------~~~~-~ 493 (494)
T COG0464 451 ----------------------IAALVREAALEALREAR-RREVTLDDFLDALKKIKPSVT------YEEW-K 493 (494)
T ss_pred ----------------------HHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHhcCCCCC------hhhc-c
Confidence 99999999999988764 457999999999999999988 8888 5
No 12
>KOG0728|consensus
Probab=100.00 E-value=1.9e-32 Score=222.41 Aligned_cols=201 Identities=35% Similarity=0.591 Sum_probs=181.0
Q ss_pred CCCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 4 LGGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 4 ~~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
-+..|.||.|++|+|..+|+|++.+.++++|-.|+.++|+|||+||||++...|..++..+ ++..+++.-+||+++|++
T Consensus 203 hht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~gg-dsevqrtmlellnqldgf 281 (404)
T KOG0728|consen 203 HHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGG-DSEVQRTMLELLNQLDGF 281 (404)
T ss_pred hhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCc-cHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999999999999999999999999998887665543 455678888999999999
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchh
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSK 163 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~ 163 (237)
....+|-||.+||+.+-+||+++||||+|+.|+||+|+.+.|.+||+.+-+++.+-...++..+|.+..|.||++
T Consensus 282 eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgae----- 356 (404)
T KOG0728|consen 282 EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAE----- 356 (404)
T ss_pred ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccch-----
Confidence 999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q psy5642 164 HRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQLIKLYENY 234 (237)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~~~~~~~~~~ 234 (237)
++.+|.+|.+.+.++. ..+||++||+-|+...-...+......-+=|
T Consensus 357 ----------------------vk~vcteagm~alrer--rvhvtqedfemav~kvm~k~~e~nms~~kl~ 403 (404)
T KOG0728|consen 357 ----------------------VKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 403 (404)
T ss_pred ----------------------hhhhhhhhhHHHHHHh--hccccHHHHHHHHHHHHhccccccchHHHhh
Confidence 9999999999999876 5789999999998876554555554444444
No 13
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=229.30 Aligned_cols=186 Identities=40% Similarity=0.642 Sum_probs=168.3
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+.+|+.+.++.+.++|.|++++.++.+|..|...+|+||||||+|.++..+.+.... .+...++++..++.+++++..
T Consensus 203 l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~-~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 203 TTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG-ADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred cCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCC-ccHHHHHHHHHHHHHhhccCC
Confidence 3568999999999999999999999999999999999999999999999877543322 233456888999999999877
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
..++.||+|||+++.+|++++||||||..|+|++|+.++|..||+.++.+.++..+.++.++|..|+||||+|
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaD------- 354 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAAD------- 354 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHH-------
Confidence 7889999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCC
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p 221 (237)
|.++|.+|.+.++.++ ...|+.+||..|++....
T Consensus 355 --------------------I~~l~~eA~~~A~r~~--~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 355 --------------------IAAICQEAGMQAVRKN--RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred --------------------HHHHHHHHHHHHHHcC--CCccCHHHHHHHHHHHHh
Confidence 9999999999999887 457999999999998644
No 14
>KOG0735|consensus
Probab=99.97 E-value=7.7e-31 Score=237.26 Aligned_cols=151 Identities=47% Similarity=0.782 Sum_probs=143.4
Q ss_pred CCCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 4 LGGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 4 ~~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
+.+++.||.|++.+|.+||+|.+++++|++|++|+..+||||||||+|.++++|+-+.. ....|+++++|++||+.
T Consensus 723 ~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT----GVTDRVVNQlLTelDG~ 798 (952)
T KOG0735|consen 723 SNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST----GVTDRVVNQLLTELDGA 798 (952)
T ss_pred hhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC----CchHHHHHHHHHhhccc
Confidence 46789999999999999999999999999999999999999999999999999976653 44589999999999999
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCccc
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~D 158 (237)
..-.+|+|+|+|++|+.||||++||||+|+.++-+.|+..+|.+|++.+-.......++|++-+|.+|+||||+|
T Consensus 799 Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgAD 873 (952)
T KOG0735|consen 799 EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGAD 873 (952)
T ss_pred cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhh
Confidence 888899999999999999999999999999999999999999999999999888889999999999999999999
No 15
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=212.11 Aligned_cols=184 Identities=30% Similarity=0.444 Sum_probs=164.3
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
-.+.||+-|++.+|.+.|+|++.+.++.+|++|...+|||+||||+|+++-+|.-.+. .....+++|.||+.||++.
T Consensus 174 e~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQel---RGDVsEiVNALLTelDgi~ 250 (368)
T COG1223 174 EAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL---RGDVSEIVNALLTELDGIK 250 (368)
T ss_pred ccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh---cccHHHHHHHHHHhccCcc
Confidence 3578999999999999999999999999999999999999999999999988876554 2345789999999999999
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhH
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
.+.+|+.|++||+|+.+|+++++ ||...|+|.+|+.++|.+|++.++++.+++-+.++..++.+|.||||+|
T Consensus 251 eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRd------ 322 (368)
T COG1223 251 ENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRD------ 322 (368)
T ss_pred cCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchh------
Confidence 88899999999999999999999 9999999999999999999999999999998999999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHH-HHHHHHHHHHHhccccCCccHHHHHHHHhhcCCC
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVA-VCDEAALSALENNLEAAYVSHQDFLTALQLVKPR 222 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~-~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~ 222 (237)
|+. +...|...++.++ .-.|+.+||..|+++.++.
T Consensus 323 ---------------------ikekvlK~aLh~Ai~ed--~e~v~~edie~al~k~r~~ 358 (368)
T COG1223 323 ---------------------IKEKVLKTALHRAIAED--REKVEREDIEKALKKERKR 358 (368)
T ss_pred ---------------------HHHHHHHHHHHHHHHhc--hhhhhHHHHHHHHHhhccc
Confidence 654 4455556666666 3358999999999976553
No 16
>KOG0737|consensus
Probab=99.97 E-value=1.3e-30 Score=221.64 Aligned_cols=184 Identities=33% Similarity=0.544 Sum_probs=164.6
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
+++.|++|+.+.+.++|+|++++.++.+|..|...+||||||||+|.++..|..+ ..+....+.++|+..+|++.+
T Consensus 151 aga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~----dHEa~a~mK~eFM~~WDGl~s 226 (386)
T KOG0737|consen 151 AGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST----DHEATAMMKNEFMALWDGLSS 226 (386)
T ss_pred cCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccc----hHHHHHHHHHHHHHHhccccC
Confidence 5789999999999999999999999999999999999999999999999998432 357778999999999999988
Q ss_pred CCC--EEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchh
Q psy5642 86 LNN--VTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSK 163 (237)
Q Consensus 86 ~~~--v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~ 163 (237)
+++ |+|+|+||+|.++|.|++| |+.+.++|+.|+..+|++||+.+|++.++.+++|+.++|..|+||||+|
T Consensus 227 ~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSD----- 299 (386)
T KOG0737|consen 227 KDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSD----- 299 (386)
T ss_pred CCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHH-----
Confidence 665 9999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccc--------------------------cCCccHHHHHHHHh
Q psy5642 164 HRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLE--------------------------AAYVSHQDFLTALQ 217 (237)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~--------------------------~~~v~~~df~~al~ 217 (237)
|.++|..|+...+++-.. -++++++||..|+.
T Consensus 300 ----------------------LkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~ 357 (386)
T KOG0737|consen 300 ----------------------LKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAIN 357 (386)
T ss_pred ----------------------HHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHH
Confidence 777777777666543110 26789999999988
Q ss_pred hcCCC
Q psy5642 218 LVKPR 222 (237)
Q Consensus 218 ~~~p~ 222 (237)
.+-++
T Consensus 358 ~v~~~ 362 (386)
T KOG0737|consen 358 RVSAS 362 (386)
T ss_pred hhhhH
Confidence 66555
No 17
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=7.3e-30 Score=226.31 Aligned_cols=190 Identities=45% Similarity=0.746 Sum_probs=170.8
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+|+.++++++.++|.|++++.++.+|+.|...+|+||||||+|.++..+.+...++ +...++.+..++..++++...
T Consensus 190 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~-~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 190 NATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSG-DREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred CCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCc-cHHHHHHHHHHHHhccccCCC
Confidence 4689999999999999999999999999999999999999999999998776544332 234467778899999988777
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
+++.||+|||+++.+|++++||||||..|+|++|+.++|.+||+.++++..+..+.++..+|..|+||+|+|
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgad-------- 340 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGAD-------- 340 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHH--------
Confidence 789999999999999999999999999999999999999999999999888878899999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCHH
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQ 226 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~~ 226 (237)
|.++|.+|...+++++ ...|+.+||.+|+..++|+...+
T Consensus 341 -------------------l~~l~~eA~~~a~~~~--~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 341 -------------------LKAICTEAGMFAIRDD--RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred -------------------HHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHhcccccc
Confidence 9999999999998886 45699999999999999876544
No 18
>KOG0731|consensus
Probab=99.97 E-value=4.8e-30 Score=236.85 Aligned_cols=184 Identities=42% Similarity=0.684 Sum_probs=169.3
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
+++||+.+++|++...++|....+++++|..|+.++||||||||||++...+.+....+.+.....++++||..||++..
T Consensus 368 AgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 368 AGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred cCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 68999999999999999999999999999999999999999999999999886322333344557889999999999998
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
...|+|+++||+++-+|++++||||||++|+++.|+...|.+|++.|++..+.. .+.+|..+|..|+||+|+|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gad------ 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGAD------ 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHH------
Confidence 888999999999999999999999999999999999999999999999998885 8899999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhh
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQL 218 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~ 218 (237)
|+++|.+|++.+.++. ...|+..||..|++.
T Consensus 522 ---------------------l~n~~neaa~~a~r~~--~~~i~~~~~~~a~~R 552 (774)
T KOG0731|consen 522 ---------------------LANLCNEAALLAARKG--LREIGTKDLEYAIER 552 (774)
T ss_pred ---------------------HHhhhhHHHHHHHHhc--cCccchhhHHHHHHH
Confidence 9999999999999887 456999999999993
No 19
>KOG0740|consensus
Probab=99.97 E-value=2.7e-30 Score=226.17 Aligned_cols=199 Identities=37% Similarity=0.576 Sum_probs=176.2
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
=+++.|+.+++++|.++|+|++++.+|.+|..|+..+|+|+||||+|.++..|.+.. .+...++..+++.++++..
T Consensus 209 E~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e----~e~srr~ktefLiq~~~~~ 284 (428)
T KOG0740|consen 209 ESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNE----HESSRRLKTEFLLQFDGKN 284 (428)
T ss_pred hhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcc----cccchhhhhHHHhhhcccc
Confidence 467899999999999999999999999999999999999999999999999985544 3444788999999888765
Q ss_pred C--CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccc
Q psy5642 85 P--LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSL 161 (237)
Q Consensus 85 ~--~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~ 161 (237)
. .++|+||||||.||++|.+++| ||.+.+++|.|+.+.|..+|+.++...+.. .+.+++.+++.|+||+++|
T Consensus 285 s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsd--- 359 (428)
T KOG0740|consen 285 SAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSD--- 359 (428)
T ss_pred CCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCccccc---
Confidence 4 4579999999999999999999 999999999999999999999999887554 7899999999999999999
Q ss_pred hhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----------ccCCccHHHHHHHHhhcCCCCCHHHHHH
Q psy5642 162 SKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL-----------EAAYVSHQDFLTALQLVKPRTPPQLIKL 230 (237)
Q Consensus 162 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~-----------~~~~v~~~df~~al~~~~p~~~~~~~~~ 230 (237)
|.++|.+|++...+... ..++++..||..|++.++|+++.+.++.
T Consensus 360 ------------------------i~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~ 415 (428)
T KOG0740|consen 360 ------------------------ITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEK 415 (428)
T ss_pred ------------------------HHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCccccch
Confidence 88888888865544321 2458999999999999999999999999
Q ss_pred HHHHhh
Q psy5642 231 YENYIK 236 (237)
Q Consensus 231 ~~~~~~ 236 (237)
|.+|-+
T Consensus 416 ~~~~~~ 421 (428)
T KOG0740|consen 416 YEKWDK 421 (428)
T ss_pred hHHHhh
Confidence 999965
No 20
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-30 Score=232.68 Aligned_cols=184 Identities=40% Similarity=0.650 Sum_probs=170.2
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
-++.||+.+++|++...|+|-+...+|++|.+|++++||||||||+|++...|+... .+.......+++++|.+||++.
T Consensus 206 EA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~-GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 206 EAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL-GGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred ccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCC-CCCchHHHHHHHHHHhhhccCC
Confidence 367899999999999999999999999999999999999999999999999987652 2223344679999999999999
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhH
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
.+..|+||++||+|+-+|+||+||||||++|.++.||...|++|++.++++.++..++++..+|..|.||+|+|
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAd------ 358 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGAD------ 358 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccch------
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhh
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQL 218 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~ 218 (237)
+.+++++|++.+.+.+ ...+++.||.+|...
T Consensus 359 ---------------------L~nl~NEAal~aar~n--~~~i~~~~i~ea~dr 389 (596)
T COG0465 359 ---------------------LANLLNEAALLAARRN--KKEITMRDIEEAIDR 389 (596)
T ss_pred ---------------------HhhhHHHHHHHHHHhc--CeeEeccchHHHHHH
Confidence 9999999999999888 567999999999875
No 21
>KOG0730|consensus
Probab=99.96 E-value=1.9e-29 Score=227.30 Aligned_cols=189 Identities=38% Similarity=0.557 Sum_probs=173.3
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcC-CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVS-PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~-P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
+++++.++++.+++++.|+++++++++|+.|..++ |++|||||+|.+++++..... ...++.++++++++++..
T Consensus 243 ~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-----~e~Rv~sqlltL~dg~~~ 317 (693)
T KOG0730|consen 243 GAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-----VESRVVSQLLTLLDGLKP 317 (693)
T ss_pred CceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-----HHHHHHHHHHHHHhhCcC
Confidence 47899999999999999999999999999999999 999999999999998876542 458999999999999988
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
.++++||++||+|..||++++| ||||+.+++..|+..+|.+|++.+.++++...+.++.++|..|+||+|+|
T Consensus 318 ~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaD------- 389 (693)
T KOG0730|consen 318 DAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGAD------- 389 (693)
T ss_pred cCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHH-------
Confidence 8899999999999999999999 99999999999999999999999999999888899999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCC-----------CCHHHHHHHHHH
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPR-----------TPPQLIKLYENY 234 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~-----------~~~~~~~~~~~~ 234 (237)
+.++|.+|...+.++ +.++|..|+...+|+ +++++|+.+++.
T Consensus 390 --------------------L~~l~~ea~~~~~r~-------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~l 442 (693)
T KOG0730|consen 390 --------------------LAALCREASLQATRR-------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEEL 442 (693)
T ss_pred --------------------HHHHHHHHHHHHhhh-------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHH
Confidence 999999999999888 678899998888866 566677766655
Q ss_pred h
Q psy5642 235 I 235 (237)
Q Consensus 235 ~ 235 (237)
+
T Consensus 443 K 443 (693)
T KOG0730|consen 443 K 443 (693)
T ss_pred H
Confidence 4
No 22
>KOG0727|consensus
Probab=99.96 E-value=2e-29 Score=205.13 Aligned_cols=186 Identities=39% Similarity=0.642 Sum_probs=173.1
Q ss_pred CCCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 4 LGGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 4 ~~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.+..+.||.|.+|++..+|.|++++.++++|..|+.++|+||||||+|+++.+|-+.+... +...++++-+||++||++
T Consensus 211 ~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtga-drevqril~ellnqmdgf 289 (408)
T KOG0727|consen 211 NHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGA-DREVQRILIELLNQMDGF 289 (408)
T ss_pred hccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccc-cHHHHHHHHHHHHhccCc
Confidence 4567889999999999999999999999999999999999999999999998887766543 345579999999999999
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchh
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSK 163 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~ 163 (237)
....+|-||.+||+.+.+||+++||||.|+.|+||+|+.-|++-++.....++.+..++|++++..+-+..|++|
T Consensus 290 dq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~ad----- 364 (408)
T KOG0727|consen 290 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGAD----- 364 (408)
T ss_pred CcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhh-----
Confidence 998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhc
Q psy5642 164 HRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLV 219 (237)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~ 219 (237)
|.++|++|.+.+++++ ...|...||++|.+..
T Consensus 365 ----------------------i~aicqeagm~avr~n--ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 365 ----------------------INAICQEAGMLAVREN--RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ----------------------HHHHHHHHhHHHHHhc--ceeeeHHHHHHHHHhh
Confidence 9999999999999988 6679999999997754
No 23
>KOG0726|consensus
Probab=99.96 E-value=4.5e-30 Score=212.34 Aligned_cols=183 Identities=38% Similarity=0.675 Sum_probs=168.5
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
-+.|+.|-+|+|..+|.|++.+.+|.+|..|..++|+|+||||||++..+|-++.+.+.. ..++..-+||+++|++..+
T Consensus 244 SATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sgger-EiQrtmLELLNQldGFdsr 322 (440)
T KOG0726|consen 244 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGER-EIQRTMLELLNQLDGFDSR 322 (440)
T ss_pred chhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHH-HHHHHHHHHHHhccCcccc
Confidence 467899999999999999999999999999999999999999999999998876655543 3456667999999999998
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
+.|-||.+||..+.+||+++||||+|+.|+|+.||...+..||..+..++-+..+++++++...-..+||+|
T Consensus 323 gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAd-------- 394 (440)
T KOG0726|consen 323 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGAD-------- 394 (440)
T ss_pred CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhccccccccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhc
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLV 219 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~ 219 (237)
|+++|.+|.+-+.++. ...|+.+||..|.+.+
T Consensus 395 -------------------IkAictEaGllAlRer--Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 395 -------------------IKAICTEAGLLALRER--RMKVTMEDFKKAKEKV 426 (440)
T ss_pred -------------------HHHHHHHHhHHHHHHH--HhhccHHHHHHHHHHH
Confidence 9999999999999887 4569999999997753
No 24
>KOG0652|consensus
Probab=99.96 E-value=2.6e-29 Score=205.25 Aligned_cols=187 Identities=37% Similarity=0.633 Sum_probs=172.6
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
-.+..|+.+-+.+|...|+|++.+.++++|..|+..+|+||||||+|++..+|-++...+ +...+++.-+||+++|++.
T Consensus 228 qT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~G-DREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 228 QTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAG-DREVQRTMLELLNQLDGFS 306 (424)
T ss_pred hccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccc-cHHHHHHHHHHHHhhcCCC
Confidence 346778889999999999999999999999999999999999999999999988776554 3455688889999999999
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhH
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
+..+|-||++||+.+-+||+++|+||.|+.|+||.|+.+.|..|++.+-+++....+++|++||.-|++|.|+.
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQ------ 380 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQ------ 380 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCC
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p 221 (237)
.+++|-+|.+.+.+++ ...|+.+||.+++.+.+.
T Consensus 381 ---------------------cKAVcVEAGMiALRr~--atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 381 ---------------------CKAVCVEAGMIALRRG--ATEVTHEDFMEGILEVQA 414 (424)
T ss_pred ---------------------heeeehhhhHHHHhcc--cccccHHHHHHHHHHHHH
Confidence 9999999999999988 557999999999876543
No 25
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=1.2e-28 Score=224.98 Aligned_cols=185 Identities=39% Similarity=0.628 Sum_probs=165.3
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+.+|+.++++++.+.|.|.+.+.++.+|..|+..+||||||||+|.++..+...... .......+++.|+..|+++..
T Consensus 112 ~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~-~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 112 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred cCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC-ccHHHHHHHHHHHhhhccccC
Confidence 4678999999999999999999999999999999999999999999999877553211 123346788999999999888
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
.++++||+|||+|+.||++++||||||..|+++.|+.++|.+||+.+++..+...+.++..+|..|.||+|+|
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgad------- 263 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGAD------- 263 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHH-------
Confidence 7889999999999999999999999999999999999999999999999887777899999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcC
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
|.+++++|...+.+++ ...|+.+||..|++...
T Consensus 264 --------------------l~~l~~eA~~~a~~~~--~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 264 --------------------LANLLNEAALLAARKN--KTEITMNDIEEAIDRVI 296 (495)
T ss_pred --------------------HHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHh
Confidence 9999999988877765 45799999999999764
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=2.2e-28 Score=218.04 Aligned_cols=184 Identities=36% Similarity=0.644 Sum_probs=165.4
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
..+|+.+.++++.++|.|++.+.++.+|..|...+||||||||+|.++..+......+ .....+.+..++..++++...
T Consensus 242 ~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg-~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 242 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGG-EKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred CCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcc-cHHHHHHHHHHHHHHhhhccc
Confidence 4578999999999999999999999999999999999999999999998775443322 234457778899999988777
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
.++.||+|||+++.+|++++||||||..|+|+.|+.++|.+||+.++.+..+..+.++..++..|+||||+|
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAd-------- 392 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGAD-------- 392 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHH--------
Confidence 789999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcC
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
|.++|.+|...+..++ ...|+.+||..|++.+.
T Consensus 393 -------------------I~~i~~eA~~~Alr~~--r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 393 -------------------IKAICTEAGLLALRER--RMKVTQADFRKAKEKVL 425 (438)
T ss_pred -------------------HHHHHHHHHHHHHHhc--CCccCHHHHHHHHHHHH
Confidence 9999999999999887 45699999999998753
No 27
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=4.6e-28 Score=226.64 Aligned_cols=186 Identities=40% Similarity=0.641 Sum_probs=167.8
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+.+|+.++++++...+.|.+...++.+|..|+..+||||||||+|.++..+...... .......+++.+|..|+++..
T Consensus 209 ~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g-~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 209 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred cCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC-CchHHHHHHHHHHHhhhcccC
Confidence 4578999999999999999999999999999999999999999999999877653221 233446789999999999988
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
..+++||+|||+|+.||++++||||||+.|+|+.|+.++|.+||+.++++.++..+.++..+|..|.||||+|
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgad------- 360 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGAD------- 360 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHH-------
Confidence 7889999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCC
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p 221 (237)
|.++|++|...+.+.+ ...++..||..|+..+.+
T Consensus 361 --------------------l~~l~~eAa~~a~r~~--~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 361 --------------------LANLVNEAALFAARGN--KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred --------------------HHHHHHHHHHHHHHcC--CCcccHHHHHHHHHHHhc
Confidence 9999999999988776 456999999999987654
No 28
>KOG0729|consensus
Probab=99.96 E-value=1.7e-28 Score=200.99 Aligned_cols=186 Identities=41% Similarity=0.666 Sum_probs=171.6
Q ss_pred CCCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 4 LGGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 4 ~~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
....+-||.|-+|+|..+|+|++.+.++++|+.|+...-|||||||+|++.+.|-+.+..+ ++..+++.-+++++||++
T Consensus 233 nrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~gg-dnevqrtmleli~qldgf 311 (435)
T KOG0729|consen 233 NRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGG-DNEVQRTMLELINQLDGF 311 (435)
T ss_pred cccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCC-cHHHHHHHHHHHHhccCC
Confidence 4556789999999999999999999999999999999999999999999998887765443 566678889999999999
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchh
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSK 163 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~ 163 (237)
..+++|-|+.+||+|+.+||+++||||+|+.++|.+|+.+.|..||+.+.+.+.+..+.-|+-||..|..-||+|
T Consensus 312 dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgae----- 386 (435)
T KOG0729|consen 312 DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAE----- 386 (435)
T ss_pred CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchH-----
Confidence 999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhc
Q psy5642 164 HRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLV 219 (237)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~ 219 (237)
|..+|.+|.+.+++.. ....|..||+.|+...
T Consensus 387 ----------------------irsvcteagmfairar--rk~atekdfl~av~kv 418 (435)
T KOG0729|consen 387 ----------------------IRSVCTEAGMFAIRAR--RKVATEKDFLDAVNKV 418 (435)
T ss_pred ----------------------HHHHHHHhhHHHHHHH--hhhhhHHHHHHHHHHH
Confidence 9999999999998866 4568999999998754
No 29
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=4.7e-28 Score=237.88 Aligned_cols=177 Identities=15% Similarity=0.204 Sum_probs=147.6
Q ss_pred CCceEEEEEecccccccc-----------------------------------------cChHHH--HHHHHHHHHHhcC
Q psy5642 5 GGLTEVVESIGPELFRKY-----------------------------------------VGESER--CVRDVFKRARQVS 41 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~-----------------------------------------~g~~~~--~l~~~f~~a~~~~ 41 (237)
-+++||+.|+++++++++ ++.++. .++.+|+.|++++
T Consensus 1653 es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~S 1732 (2281)
T CHL00206 1653 NSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMS 1732 (2281)
T ss_pred hcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCC
Confidence 467899999999998765 222333 4899999999999
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC---CCCCEEEEEEeCCCCccchhccCCCCcccEEEec
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV---PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVP 118 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~ 118 (237)
||||||||||+++.+... ...++.|+++|++.. ...+|+||||||+|+.||||++||||||+.|+++
T Consensus 1733 PCIIFIDEIDaL~~~ds~----------~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir 1802 (2281)
T CHL00206 1733 PCIIWIPNIHDLNVNESN----------YLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIR 1802 (2281)
T ss_pred CeEEEEEchhhcCCCccc----------eehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeC
Confidence 999999999999876211 124788999999753 3457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH--cCCCCC-chhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHH
Q psy5642 119 LPDDLTRAAILKIRL--ARSPLG-EDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAAL 195 (237)
Q Consensus 119 ~P~~~~R~~il~~~l--~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~ 195 (237)
.|+.++|++++..++ ++..+. ...++..+|..|.||||+| |+++|.+|+.
T Consensus 1803 ~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD---------------------------LanLvNEAal 1855 (2281)
T CHL00206 1803 RLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD---------------------------LVALTNEALS 1855 (2281)
T ss_pred CCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH---------------------------HHHHHHHHHH
Confidence 999999999998654 334443 3368999999999999999 9999999999
Q ss_pred HHHHhccccCCccHHHHHHHHhhcC
Q psy5642 196 SALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 196 ~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
.++.++ ...|+.++|..|+....
T Consensus 1856 iAirq~--ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1856 ISITQK--KSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHcC--CCccCHHHHHHHHHHHH
Confidence 999887 55699999999988654
No 30
>KOG0741|consensus
Probab=99.95 E-value=1.5e-28 Score=216.49 Aligned_cols=203 Identities=38% Similarity=0.589 Sum_probs=162.3
Q ss_pred EecccccccccChHHHHHHHHHHHHHhcC--------CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 13 SIGPELFRKYVGESERCVRDVFKRARQVS--------PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 13 v~~s~l~~~~~g~~~~~l~~~f~~a~~~~--------P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
|++.++.+||+|+++.++|++|..|.+.+ =-||+|||||++|.+|++...++ .....++++||.-||+..
T Consensus 288 VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~T--GVhD~VVNQLLsKmDGVe 365 (744)
T KOG0741|consen 288 VNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGST--GVHDTVVNQLLSKMDGVE 365 (744)
T ss_pred cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCC--CccHHHHHHHHHhcccHH
Confidence 77889999999999999999999997532 23999999999999998765532 344789999999999999
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCC----CCchhhHHHHHHHCCCCCccccc
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSP----LGEDVCVEELVRLTEGYSGAEQS 160 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~----~~~~~~~~~la~~t~g~s~~Dl~ 160 (237)
.-++|+|||-||+.+.||+||+|||||.-++++.+||++.|.+||+.+.+++. +..++|+.+||.+|..|||++|+
T Consensus 366 qLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle 445 (744)
T KOG0741|consen 366 QLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE 445 (744)
T ss_pred hhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH
Confidence 88999999999999999999999999999999999999999999998887653 44899999999999999999955
Q ss_pred chhHHhhhhccccCCCCCCCCCchhHHHHHHHHH-HHHHHhccccCCccHHHHHHHHhhcCCC--CCHHHHHHHH
Q psy5642 161 LSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAA-LSALENNLEAAYVSHQDFLTALQLVKPR--TPPQLIKLYE 232 (237)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~-~~~~~~~~~~~~v~~~df~~al~~~~p~--~~~~~~~~~~ 232 (237)
-+++.|.+.+-.| .+..-. ...-....+...|+.+||..||..++|+ ++.++++.+.
T Consensus 446 glVksA~S~A~nR---------------~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 446 GLVKSAQSFAMNR---------------HVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHHHHHHHh---------------hhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 5555444333111 111000 0000112234679999999999999999 4888887754
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=4.8e-27 Score=218.19 Aligned_cols=184 Identities=40% Similarity=0.637 Sum_probs=164.8
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+.||+.++++++...+.|.+...++.+|..|+..+||||||||+|.++..++..... .......+++.|+..++++..
T Consensus 240 ~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 240 AEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG-GNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred hCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC-CcHHHHHHHHHHHhhhccccC
Confidence 4679999999999999999999999999999999999999999999999776543322 233456788999999999887
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
+.+++||++||+++.+|++++||||||.+|++++|+.++|.+||+.+++......+.++..+|..|.||+|+|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaD------- 391 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGAD------- 391 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHH-------
Confidence 7889999999999999999999999999999999999999999999999877778899999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhc
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLV 219 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~ 219 (237)
|.+++++|+..+.+++ ...|+.+||..|+..+
T Consensus 392 --------------------L~~lvneAal~a~r~~--~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 392 --------------------LANLLNEAAILTARRK--KATITMKEIDTAIDRV 423 (638)
T ss_pred --------------------HHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHHH
Confidence 9999999988887766 4569999999999875
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=2.4e-26 Score=202.62 Aligned_cols=183 Identities=46% Similarity=0.791 Sum_probs=162.7
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+|+.+.++++...|.|++...++.+|..|+...|+||||||+|.++..+.....++ ....++.+..++..++++...
T Consensus 181 ~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~-~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 181 NATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSG-DREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred CCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCc-cHHHHHHHHHHHHHhhCCCCC
Confidence 4578899999999999999999999999999999999999999999987765443322 234456778888889887767
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
+++.||+|||+++.+|++++|||||+..|+|+.|+.++|.+||+.++.+..+..+.++..++..|+||+|+|
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~d-------- 331 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGAD-------- 331 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHH--------
Confidence 789999999999999999999999999999999999999999999998888777789999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhc
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLV 219 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~ 219 (237)
|.++|.+|+..++.++ ...|+.+||..|++.+
T Consensus 332 -------------------l~~l~~~A~~~a~~~~--~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 332 -------------------LKAICTEAGMFAIREE--RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -------------------HHHHHHHHHHHHHHhC--CCccCHHHHHHHHHHh
Confidence 9999999999998876 4579999999999864
No 33
>KOG0732|consensus
Probab=99.94 E-value=3.4e-26 Score=216.49 Aligned_cols=191 Identities=37% Similarity=0.587 Sum_probs=170.0
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
..+.-|+.-++.+..++|+|+.+++++.+|+.|+.++|+|||+||||-|++.++.... .....+++.||..|+++.
T Consensus 327 ~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE----qih~SIvSTLLaLmdGld 402 (1080)
T KOG0732|consen 327 NRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE----QIHASIVSTLLALMDGLD 402 (1080)
T ss_pred ccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH----HhhhhHHHHHHHhccCCC
Confidence 3467788889999999999999999999999999999999999999999999866543 233678999999999999
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchh
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSK 163 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~ 163 (237)
.++.|+|||+||+|+.+|+++|||||||+.++|++|+.++|.+|+..+.++-... ....+..+|..|.||.|+|
T Consensus 403 sRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaD----- 477 (1080)
T KOG0732|consen 403 SRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGAD----- 477 (1080)
T ss_pred CCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHH-----
Confidence 9999999999999999999999999999999999999999999999988776533 6677889999999999999
Q ss_pred HHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccc--------------cCCccHHHHHHHHhhcCCCCCHH
Q psy5642 164 HRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLE--------------AAYVSHQDFLTALQLVKPRTPPQ 226 (237)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~--------------~~~v~~~df~~al~~~~p~~~~~ 226 (237)
|+++|.+|++.++.+... ...|...||..|+..+.|+..+.
T Consensus 478 ----------------------lkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 478 ----------------------LKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred ----------------------HHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 999999999999876432 23588999999999999987763
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=3.5e-25 Score=190.37 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=126.3
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhc-----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQV-----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM 80 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 80 (237)
.+++|+.+++.+|+++|+|+++++|+.+|..|... +||||||||||.+++.++..+. ....+.+..+|++.+
T Consensus 172 lg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~---tv~~qiV~~tLLnl~ 248 (413)
T PLN00020 172 MGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQY---TVNNQMVNGTLMNIA 248 (413)
T ss_pred cCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCc---chHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999864 6999999999999998863321 112234458999998
Q ss_pred cCC------------CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHH
Q psy5642 81 DGI------------VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELV 148 (237)
Q Consensus 81 ~~~------------~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la 148 (237)
|+. ....+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++..+. ..++..|+
T Consensus 249 D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv 325 (413)
T PLN00020 249 DNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLV 325 (413)
T ss_pred cCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHH
Confidence 863 23457999999999999999999999999965 5899999999999999987764 67888888
Q ss_pred HHCCC----CCcccccchhHHh
Q psy5642 149 RLTEG----YSGAEQSLSKHRA 166 (237)
Q Consensus 149 ~~t~g----~s~~Dl~~~~~~a 166 (237)
..+.| |.|+--..+++++
T Consensus 326 ~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 326 DTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred HcCCCCCchhhhHHHHHHHHHH
Confidence 87765 4555546666666
No 35
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=4.1e-25 Score=199.78 Aligned_cols=204 Identities=34% Similarity=0.502 Sum_probs=165.3
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
....|+.++++++.++|.|++++.++.+|+.|+.. .|+||||||+|.++.+++.... +....++++.|+++|+
T Consensus 250 ~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s---~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 250 DKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS---SDVETTVVPQLLSELD 326 (512)
T ss_pred CceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc---chHHHHHHHHHHHHhc
Confidence 45678899999999999999999999999999874 6999999999999988754332 2344688999999999
Q ss_pred CCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC-CCCchhhHHHHHHHCCCCCccccc
Q psy5642 82 GIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS-PLGEDVCVEELVRLTEGYSGAEQS 160 (237)
Q Consensus 82 ~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~-~~~~~~~~~~la~~t~g~s~~Dl~ 160 (237)
++...++++||+|||+++.||++++||||||.+|+|++|+.++|.+||+.++... ++ ...+..+.|++++++.
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l------~~~l~~~~g~~~a~~~ 400 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL------DADLAEFDGDREATAA 400 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc------hHHHHHhcCCCHHHHH
Confidence 9988788999999999999999999999999999999999999999999998642 22 2334557899999999
Q ss_pred chhHHhhhhccccC-----------------CCCCCCCCchhHHHHHHHHHHHHHHhccc--cCCccHHHHHHHHhh
Q psy5642 161 LSKHRAKKIRPRRE-----------------SNPGPPACKPSIVAVCDEAALSALENNLE--AAYVSHQDFLTALQL 218 (237)
Q Consensus 161 ~~~~~a~~~~~~~~-----------------~~~~~~~~~~~i~~~~~~a~~~~~~~~~~--~~~v~~~df~~al~~ 218 (237)
.+++++....-.+. ..-.+-.+..-|+++|..|...++++... ...++.+|+..|+..
T Consensus 401 al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 401 ALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHH
Confidence 99888744322211 01123344667899999999988887532 357999999999874
No 36
>KOG0651|consensus
Probab=99.93 E-value=5e-26 Score=189.59 Aligned_cols=184 Identities=38% Similarity=0.683 Sum_probs=163.4
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
.+.|+.+..+.+.++|+||+.+.|++.|..|+.+.|||||+||||++.+.+.+...+. ....++++=+|+++|+++...
T Consensus 191 g~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~-dreiqrTLMeLlnqmdgfd~l 269 (388)
T KOG0651|consen 191 GVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSS-DREIQRTLMELLNQMDGFDTL 269 (388)
T ss_pred CCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccch-hHHHHHHHHHHHHhhccchhc
Confidence 5679999999999999999999999999999999999999999999998885544332 334467778888999999888
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
++|-+|.|||+|+.|||+|+||||.|+.+++|.|+...|..|++.+-.........+.+.+.+.++||.|+|
T Consensus 270 ~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad-------- 341 (388)
T KOG0651|consen 270 HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGAD-------- 341 (388)
T ss_pred ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHH--------
Confidence 999999999999999999999999999999999999999999998888776667889999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcC
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
+.+.|.+|...++++. ...+-.+||..++.+..
T Consensus 342 -------------------~rn~~tEag~Fa~~~~--~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 342 -------------------LRNVCTEAGMFAIPEE--RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred -------------------Hhhhcccccccccchh--hHHHhHHHHHHHHHHHH
Confidence 9999999998887776 33577899999987654
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=5.3e-24 Score=202.70 Aligned_cols=189 Identities=42% Similarity=0.694 Sum_probs=163.9
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+|+.++++++.++|.|++++.++.+|+.|....|+||||||+|.++..+.... .....++++.|+..|+++...
T Consensus 237 ~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~----~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 237 GAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT----GEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred CCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc----chHHHHHHHHHHHHhhccccC
Confidence 4679999999999999999999999999999999999999999999998765432 234468899999999998877
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
++++||++||.++.+|++++++|||+..++++.|+.++|.+||+.+.+..++..+.++..++..|+||+++|
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gad-------- 384 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGAD-------- 384 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHH--------
Confidence 889999999999999999999999999999999999999999999998888778899999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhc-----------------cccCCccHHHHHHHHhhcCCCCCHH
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENN-----------------LEAAYVSHQDFLTALQLVKPRTPPQ 226 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~-----------------~~~~~v~~~df~~al~~~~p~~~~~ 226 (237)
+..++..|...++.+. .....++.+||..|++..+|+..++
T Consensus 385 -------------------l~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~ 442 (733)
T TIGR01243 385 -------------------LAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIRE 442 (733)
T ss_pred -------------------HHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccch
Confidence 6666666665554431 1234689999999999999986543
No 38
>KOG0735|consensus
Probab=99.83 E-value=9.7e-20 Score=165.71 Aligned_cols=189 Identities=21% Similarity=0.262 Sum_probs=147.9
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHH-hcCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTE-MDGIVP 85 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~ 85 (237)
-+|+..++|+.+-.+.....++.++.+|..|.+++|+||++|++|.|+.... ..++........+..++++ +..+.+
T Consensus 460 ~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~--~e~~q~~~~~~rla~flnqvi~~y~~ 537 (952)
T KOG0735|consen 460 IAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS--NENGQDGVVSERLAAFLNQVIKIYLK 537 (952)
T ss_pred ceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc--ccCCcchHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999999999999999999998322 2222233334455556644 444444
Q ss_pred CC-CEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchh
Q psy5642 86 LN-NVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSK 163 (237)
Q Consensus 86 ~~-~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~ 163 (237)
++ .+.||||.+..+.+++-|..|++|+.++.+++|+..+|.+||+..+++.... ...+++-++.+|+||.+.||..++
T Consensus 538 ~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 538 RNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred cCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 44 5899999999999999999999999999999999999999999999876533 445555599999999999966655
Q ss_pred HHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHh--ccccCCccHHHHHHHHhhcCCCCC
Q psy5642 164 HRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALEN--NLEAAYVSHQDFLTALQLVKPRTP 224 (237)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~--~~~~~~v~~~df~~al~~~~p~~~ 224 (237)
+|| ...++.+ ...+..++.++|.++|+.+.|.+.
T Consensus 618 eRa---------------------------i~~a~leris~~~klltke~f~ksL~~F~P~aL 653 (952)
T KOG0735|consen 618 ERA---------------------------IHEAFLERISNGPKLLTKELFEKSLKDFVPLAL 653 (952)
T ss_pred HHH---------------------------HHHHHHHHhccCcccchHHHHHHHHHhcChHHh
Confidence 555 3333322 111337999999999999888643
No 39
>KOG0736|consensus
Probab=99.81 E-value=9e-20 Score=167.14 Aligned_cols=212 Identities=22% Similarity=0.260 Sum_probs=164.5
Q ss_pred CCCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc--
Q psy5642 4 LGGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD-- 81 (237)
Q Consensus 4 ~~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~-- 81 (237)
+.-++|+++++|+++.+...+.++..+..+|.+|+..+|+|||+-++|.+..+..+.. ..++...+-..+.
T Consensus 453 s~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgge-------d~rl~~~i~~~ls~e 525 (953)
T KOG0736|consen 453 SELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGE-------DARLLKVIRHLLSNE 525 (953)
T ss_pred HHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCch-------hHHHHHHHHHHHhcc
Confidence 3457899999999999999999999999999999999999999999999985543321 1455555544444
Q ss_pred CC-CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCccccc
Q psy5642 82 GI-VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQS 160 (237)
Q Consensus 82 ~~-~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~ 160 (237)
.. ....+++||+||++.+.||+.+++ .|-++|.++.|+.+||.+||++++....+..++.+..+|.+|.||+.+|++
T Consensus 526 ~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~ 603 (953)
T KOG0736|consen 526 DFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLE 603 (953)
T ss_pred cccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHH
Confidence 22 234579999999999999999999 999999999999999999999999999999999999999999999999988
Q ss_pred chhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhc---cccCCccHHHHHHHHhhcC------------CCCCH
Q psy5642 161 LSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENN---LEAAYVSHQDFLTALQLVK------------PRTPP 225 (237)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~---~~~~~v~~~df~~al~~~~------------p~~~~ 225 (237)
.++.++...+..| +++---.-......++ .....++++||..|+..++ |.++|
T Consensus 604 ~l~~~~s~~~~~~------------i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~W 671 (953)
T KOG0736|consen 604 ALVAHSSLAAKTR------------IKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSW 671 (953)
T ss_pred HHhcCchHHHHHH------------HHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccch
Confidence 8877763222211 1110000000000111 1235799999999998544 88999
Q ss_pred HHHHHHHHHhh
Q psy5642 226 QLIKLYENYIK 236 (237)
Q Consensus 226 ~~~~~~~~~~~ 236 (237)
++++.+++.++
T Consensus 672 dDVGGLeevK~ 682 (953)
T KOG0736|consen 672 DDVGGLEEVKT 682 (953)
T ss_pred hcccCHHHHHH
Confidence 99999998764
No 40
>KOG0744|consensus
Probab=99.76 E-value=3.3e-18 Score=143.84 Aligned_cols=133 Identities=28% Similarity=0.387 Sum_probs=120.7
Q ss_pred CCcCCCceEEEEEecccccccccChHHHHHHHHHHHHHhcC---C--eEEEEccccccccccCCCCCCCCCchHHHHHHH
Q psy5642 1 MEDLGGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVS---P--SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQ 75 (237)
Q Consensus 1 ~~~~~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~---P--~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ 75 (237)
+++.+....+++++++.||+||++|+.|.+.++|+.....- . ..++|||+++|+..|.+....+.+...-|+++.
T Consensus 205 ~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNa 284 (423)
T KOG0744|consen 205 TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNA 284 (423)
T ss_pred ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHH
Confidence 35678899999999999999999999999999999988742 2 267899999999988776666677788999999
Q ss_pred HHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcC
Q psy5642 76 MLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 76 ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~ 135 (237)
+|++||.+++.++|++++|+|-.+.||.|+.. |-|-..++++|+...|.+|++.++..
T Consensus 285 lLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 285 LLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999987753
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.65 E-value=1.6e-15 Score=114.06 Aligned_cols=108 Identities=41% Similarity=0.660 Sum_probs=95.3
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcC-CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVS-PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~-P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
+.++++++++.+.+.+.+++.+.++.+|..++... |+||+|||+|.++...... .......++..++..++....
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~----~~~~~~~~~~~L~~~l~~~~~ 98 (132)
T PF00004_consen 23 GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPS----SSSFEQRLLNQLLSLLDNPSS 98 (132)
T ss_dssp TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTS----SSHHHHHHHHHHHHHHHTTTT
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccc----cccccccccceeeeccccccc
Confidence 57899999999999999999999999999999987 9999999999999887211 245668899999999999876
Q ss_pred C-CCEEEEEEeCCCCccchhccCCCCcccEEEecC
Q psy5642 86 L-NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPL 119 (237)
Q Consensus 86 ~-~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~ 119 (237)
. ++++||+|||.++.+++++++ +||+..|+++.
T Consensus 99 ~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 99 KNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp TSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5 569999999999999999997 79999999874
No 42
>KOG0742|consensus
Probab=99.65 E-value=1.7e-15 Score=131.07 Aligned_cols=128 Identities=28% Similarity=0.442 Sum_probs=108.0
Q ss_pred ChHHHHHHHHHHHHHhcCCe-EEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 24 GESERCVRDVFKRARQVSPS-VIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 24 g~~~~~l~~~f~~a~~~~P~-il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.++...|+++|++|+..... +|||||.|.++..|+.... ++..+..++.||--... .+..++++.+||.|.++|
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym---SEaqRsaLNAlLfRTGd--qSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM---SEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh---cHHHHHHHHHHHHHhcc--cccceEEEeccCCccchh
Confidence 37789999999999987655 8899999999999887763 56777888888876655 345799999999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC---------------------------chhhHHHHHHHCCCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG---------------------------EDVCVEELVRLTEGYS 155 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~---------------------------~~~~~~~la~~t~g~s 155 (237)
.++-. |||.+|+||+|..++|..||..|+.++... .+.-+++.|.+|+|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99999 999999999999999999999998765321 1234578899999999
Q ss_pred ccc
Q psy5642 156 GAE 158 (237)
Q Consensus 156 ~~D 158 (237)
|++
T Consensus 578 GRE 580 (630)
T KOG0742|consen 578 GRE 580 (630)
T ss_pred HHH
Confidence 999
No 43
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7e-15 Score=134.69 Aligned_cols=182 Identities=43% Similarity=0.619 Sum_probs=162.9
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNN 88 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 88 (237)
+++.+++....++|.|+++.+++.+|..+...+|+++++|++|.+.+.+... ......++++.++..+++.. ...
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~~----~~~~~~~v~~~l~~~~d~~~-~~~ 118 (494)
T COG0464 44 EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSD----QGEVERRVVAQLLALMDGLK-RGQ 118 (494)
T ss_pred cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCcccc----ccchhhHHHHHHHHhccccc-CCc
Confidence 3477889999999999999999999999999999999999999999988772 23455789999999999988 444
Q ss_pred EEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHhhh
Q psy5642 89 VTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKK 168 (237)
Q Consensus 89 v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a~~ 168 (237)
+++++.+|.+..+++++++||||+..+.++.|+...|.+++...........+.++..++..+.||+++|
T Consensus 119 v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---------- 188 (494)
T COG0464 119 VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGAD---------- 188 (494)
T ss_pred eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHH----------
Confidence 9999999999999999999999999999999999999999999998888777899999999999999999
Q ss_pred hccccCCCCCCCCCchhHHHHHHHHHHHHHHhc----cccCCccHHHHHHHHhhcCCC
Q psy5642 169 IRPRRESNPGPPACKPSIVAVCDEAALSALENN----LEAAYVSHQDFLTALQLVKPR 222 (237)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~----~~~~~v~~~df~~al~~~~p~ 222 (237)
+..++.++...+..+. .....++.++|.++++.+.|+
T Consensus 189 -----------------~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 189 -----------------LGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred -----------------HHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 8889988888777775 456679999999999998763
No 44
>KOG0743|consensus
Probab=99.44 E-value=3.2e-13 Score=118.61 Aligned_cols=125 Identities=23% Similarity=0.320 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccccCCCCCC--CCC-chHHHHHHHHHHHhcCCCCCC--CEEEEEEeCCCCccchh
Q psy5642 30 VRDVFKRARQVSPSVIFFDELDSLAGERGDGGGG--GGS-NVQERVLAQMLTEMDGIVPLN--NVTIVAATNRPDRIDKA 104 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~--~~~-~~~~~~~~~ll~~l~~~~~~~--~v~vI~ttn~~~~ld~a 104 (237)
|+.++..+.. .+||+|+|||.-+.-+...... ... ....-+++.||+.+|+++... -.|||+|||+++.||||
T Consensus 277 Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPA 354 (457)
T KOG0743|consen 277 LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPA 354 (457)
T ss_pred HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHh
Confidence 8888876664 5899999999966433322211 111 123467899999999999866 58899999999999999
Q ss_pred ccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCC--CCCccc
Q psy5642 105 LLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTE--GYSGAE 158 (237)
Q Consensus 105 l~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~--g~s~~D 158 (237)
|+||||.|.+|++++++.++-..+++.|+.... +..-++++...-+ -.||+|
T Consensus 355 LlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~ 408 (457)
T KOG0743|consen 355 LLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQ 408 (457)
T ss_pred hcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHH
Confidence 999999999999999999999999999997643 1233333433333 468988
No 45
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.40 E-value=5.1e-12 Score=120.72 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=110.5
Q ss_pred CceEEEEEeccccc--ccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 6 GLTEVVESIGPELF--RKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 6 ~~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.+.+++.++++.+. .+|.|+.++.++++|+.++...|+||||||+|.|++.+...+. + ..+.+.|...+.
T Consensus 237 ~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~---~---~~~~~~L~~~l~-- 308 (731)
T TIGR02639 237 KNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG---S---MDASNLLKPALS-- 308 (731)
T ss_pred cCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc---c---HHHHHHHHHHHh--
Confidence 46789999999887 6899999999999999999888999999999999876543221 1 112333444443
Q ss_pred CCCCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC----CCC-chhhHHHHHHHCCC
Q psy5642 84 VPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS----PLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~----~~~-~~~~~~~la~~t~g 153 (237)
++.+.+||+|+..+ ..|+++.| ||. .|+++.|+.+++.+||+.+...+ .+. .+..+..++..+..
T Consensus 309 --~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 309 --SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred --CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 36899999999633 67999999 997 69999999999999999766543 222 67888889999988
Q ss_pred CCccc
Q psy5642 154 YSGAE 158 (237)
Q Consensus 154 ~s~~D 158 (237)
|-+..
T Consensus 384 yi~~r 388 (731)
T TIGR02639 384 YINDR 388 (731)
T ss_pred ccccc
Confidence 88775
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.37 E-value=1.2e-11 Score=105.76 Aligned_cols=118 Identities=18% Similarity=0.262 Sum_probs=93.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+++++++++|.+.|+|++....+.+|+.|. ++||||||+|.++..++. ......+...|+..|+.. .
T Consensus 91 ~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~------~~~~~e~~~~L~~~me~~--~ 159 (287)
T CHL00181 91 KGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE------RDYGSEAIEILLQVMENQ--R 159 (287)
T ss_pred CCceEEecHHHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc------cchHHHHHHHHHHHHhcC--C
Confidence 34799999999999999999888888888764 589999999999754321 123467788888888863 3
Q ss_pred CCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCC
Q psy5642 87 NNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSP 137 (237)
Q Consensus 87 ~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~ 137 (237)
++++||++++... .++|++++ ||+.+|+|+.++.+++.+|++.++.+..
T Consensus 160 ~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 160 DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 5677777765321 23599999 9999999999999999999999997654
No 47
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.37 E-value=1.5e-11 Score=103.77 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=97.2
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
..++++++++++.+.|+|++...++.+|+.|. ++||||||+|.|..... .......+..++..|+.. .
T Consensus 74 ~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~-------~~~~~~~i~~Ll~~~e~~--~ 141 (261)
T TIGR02881 74 KGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE-------KDFGKEAIDTLVKGMEDN--R 141 (261)
T ss_pred CCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc-------cchHHHHHHHHHHHHhcc--C
Confidence 45789999999999999999999999998874 58999999999963211 123356778888888874 3
Q ss_pred CCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHH
Q psy5642 87 NNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVR 149 (237)
Q Consensus 87 ~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~ 149 (237)
.++++|+++...+ .++|++++ ||+..|+|+.++.+++.+|++.++...... ++..+..++.
T Consensus 142 ~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~ 208 (261)
T TIGR02881 142 NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLRE 208 (261)
T ss_pred CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHH
Confidence 4566666554322 36889999 999999999999999999999998765443 3344444443
No 48
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.26 E-value=4.3e-11 Score=113.91 Aligned_cols=140 Identities=19% Similarity=0.277 Sum_probs=104.5
Q ss_pred CceEEEEEeccccc--ccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 6 GLTEVVESIGPELF--RKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 6 ~~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.++.++.++...+. .+|.|+.+..++.+|..+....|+||||||+|.|++.+...+. . ..+.+.|...+.
T Consensus 241 ~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g---~---~d~~nlLkp~L~-- 312 (758)
T PRK11034 241 ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---Q---VDAANLIKPLLS-- 312 (758)
T ss_pred cCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc---H---HHHHHHHHHHHh--
Confidence 35667777776666 5789999999999999999888999999999999877643221 1 223333333333
Q ss_pred CCCCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-----chhhHHHHHHHCCC
Q psy5642 84 VPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-----EDVCVEELVRLTEG 153 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g 153 (237)
++.+.+||+|+.++ ..|++|.| ||+ .|.++.|+.+++..||+.+..++... .+..+..++..+..
T Consensus 313 --~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r 387 (758)
T PRK11034 313 --SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_pred --CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc
Confidence 47899999999865 57999999 996 69999999999999999877655433 45556666666666
Q ss_pred CCccc
Q psy5642 154 YSGAE 158 (237)
Q Consensus 154 ~s~~D 158 (237)
|.+..
T Consensus 388 yi~~r 392 (758)
T PRK11034 388 YINDR 392 (758)
T ss_pred cccCc
Confidence 65443
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.26 E-value=1.5e-10 Score=98.78 Aligned_cols=118 Identities=17% Similarity=0.291 Sum_probs=94.6
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLN 87 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 87 (237)
.+++.++++++.+.|.|++...++.+|+.|. +++|||||++.+...+.. ......+...|+..|+.. ..
T Consensus 91 ~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~------~~~~~~~~~~Ll~~le~~--~~ 159 (284)
T TIGR02880 91 GHLVSVTRDDLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENQ--RD 159 (284)
T ss_pred ceEEEecHHHHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc------cchHHHHHHHHHHHHhcC--CC
Confidence 4799999999999999999999999998874 489999999998654321 233466778888888863 35
Q ss_pred CEEEEEEeCCC--C---ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCC
Q psy5642 88 NVTIVAATNRP--D---RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPL 138 (237)
Q Consensus 88 ~v~vI~ttn~~--~---~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~ 138 (237)
+++||++++.. + .++|++++ ||...|+||.++.+++..|++.++.+...
T Consensus 160 ~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~ 213 (284)
T TIGR02880 160 DLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQY 213 (284)
T ss_pred CEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhcc
Confidence 67777776642 2 24799999 99999999999999999999999987543
No 50
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.17 E-value=6.1e-10 Score=107.76 Aligned_cols=139 Identities=23% Similarity=0.288 Sum_probs=108.4
Q ss_pred CceEEEEEeccccc--ccccChHHHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 6 GLTEVVESIGPELF--RKYVGESERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 6 ~~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
.+.+++.++.+.+. ++|.|+.+..++.+|+.++. ..++||||||++.+++.++..+.. ...+.|+..+
T Consensus 242 ~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~-------d~~n~Lkp~l-- 312 (852)
T TIGR03345 242 RNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG-------DAANLLKPAL-- 312 (852)
T ss_pred cCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc-------cHHHHhhHHh--
Confidence 45678888888876 47999999999999999975 468999999999998766432211 1223344433
Q ss_pred CCCCCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCC----CC-chhhHHHHHHHCC
Q psy5642 83 IVPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSP----LG-EDVCVEELVRLTE 152 (237)
Q Consensus 83 ~~~~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~----~~-~~~~~~~la~~t~ 152 (237)
.++.+.+||+|+..+ .+|++|.| ||. .|.|+.|+.+++..||+.+...+. +. .+..+..++..+.
T Consensus 313 --~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ 387 (852)
T TIGR03345 313 --ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSH 387 (852)
T ss_pred --hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcc
Confidence 347899999999743 58999999 996 799999999999999887665433 22 6888999999999
Q ss_pred CCCccc
Q psy5642 153 GYSGAE 158 (237)
Q Consensus 153 g~s~~D 158 (237)
+|.+.-
T Consensus 388 ryi~~r 393 (852)
T TIGR03345 388 RYIPGR 393 (852)
T ss_pred cccccc
Confidence 998876
No 51
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.09 E-value=1.1e-09 Score=106.31 Aligned_cols=136 Identities=24% Similarity=0.283 Sum_probs=105.2
Q ss_pred ceEEEEEeccccc--ccccChHHHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 7 LTEVVESIGPELF--RKYVGESERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 7 ~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
+.+++.++.+.+. .+|.|+.++.++.+|+.+.. ..|+||||||+|.|++.+++.+.. ...+.|...+
T Consensus 234 ~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~-------d~~~~lkp~l--- 303 (857)
T PRK10865 234 GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM-------DAGNMLKPAL--- 303 (857)
T ss_pred CCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch-------hHHHHhcchh---
Confidence 6788999888876 67999999999999998754 578999999999998765433221 1122222222
Q ss_pred CCCCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-----chhhHHHHHHHCCC
Q psy5642 84 VPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-----EDVCVEELVRLTEG 153 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g 153 (237)
.++.+.+||+|+..+ ++|+++.| ||+ .|.++.|+.+++..||+.+..++... .+..+...+..+++
T Consensus 304 -~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~r 379 (857)
T PRK10865 304 -ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379 (857)
T ss_pred -hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhc
Confidence 457899999999876 58999999 998 58999999999999999887654322 56667777788888
Q ss_pred CCc
Q psy5642 154 YSG 156 (237)
Q Consensus 154 ~s~ 156 (237)
|..
T Consensus 380 y~~ 382 (857)
T PRK10865 380 YIA 382 (857)
T ss_pred ccc
Confidence 884
No 52
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.06 E-value=3.5e-09 Score=102.00 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=95.5
Q ss_pred ceEEEEEeccccc---------ccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHH
Q psy5642 7 LTEVVESIGPELF---------RKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQML 77 (237)
Q Consensus 7 ~~~~i~v~~s~l~---------~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll 77 (237)
+.+|+.+++..+. ..|+|.....+...|..+....| ||+|||+|.+.....++ ..+.|+
T Consensus 372 ~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-----------~~~aLl 439 (775)
T TIGR00763 372 NRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-----------PASALL 439 (775)
T ss_pred cCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-----------HHHHHH
Confidence 3466666554332 46788888888889998877666 89999999998532111 134555
Q ss_pred HHhcC-----CC--------CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHc-----CCCCC
Q psy5642 78 TEMDG-----IV--------PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA-----RSPLG 139 (237)
Q Consensus 78 ~~l~~-----~~--------~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~-----~~~~~ 139 (237)
..|+. +. ..+++++|+|||.++.+|+++++ ||+ .|+|+.|+.+++.+|++.++. ...+.
T Consensus 440 ~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~ 516 (775)
T TIGR00763 440 EVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLK 516 (775)
T ss_pred HhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55542 11 12478999999999999999999 996 799999999999999987762 11221
Q ss_pred ------chhhHHHHHH-HCCCCCcccccc
Q psy5642 140 ------EDVCVEELVR-LTEGYSGAEQSL 161 (237)
Q Consensus 140 ------~~~~~~~la~-~t~g~s~~Dl~~ 161 (237)
.+..+..++. .|..+..++|+.
T Consensus 517 ~~~~~~~~~~l~~i~~~~~~e~g~R~l~r 545 (775)
T TIGR00763 517 PDELKITDEALLLLIKYYTREAGVRNLER 545 (775)
T ss_pred cceEEECHHHHHHHHHhcChhcCChHHHH
Confidence 3445565655 333455555333
No 53
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.02 E-value=2e-09 Score=104.63 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=112.5
Q ss_pred CceEEEEEeccccc--ccccChHHHHHHHHHHHHHhc-CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 6 GLTEVVESIGPELF--RKYVGESERCVRDVFKRARQV-SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 6 ~~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~-~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
.+.+++.++...+. .+|.|+.++.++.+|+.+... .|+||||||+|.|++.+...+. ....+.|...
T Consensus 228 ~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~-------~d~~~~Lk~~--- 297 (852)
T TIGR03346 228 KNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA-------MDAGNMLKPA--- 297 (852)
T ss_pred cCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch-------hHHHHHhchh---
Confidence 36788888888775 679999999999999999764 6999999999999875433221 1122223222
Q ss_pred CCCCCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-----chhhHHHHHHHCC
Q psy5642 83 IVPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-----EDVCVEELVRLTE 152 (237)
Q Consensus 83 ~~~~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~ 152 (237)
..++.+.+||+|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..++... .+..+..++..++
T Consensus 298 -l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~ 373 (852)
T TIGR03346 298 -LARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSH 373 (852)
T ss_pred -hhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcc
Confidence 2447899999999864 57999999 997 58999999999999999887665432 5678888899999
Q ss_pred CCCccc------ccchhHHhhhh
Q psy5642 153 GYSGAE------QSLSKHRAKKI 169 (237)
Q Consensus 153 g~s~~D------l~~~~~~a~~~ 169 (237)
+|.+.- |..+...|..+
T Consensus 374 ~yi~~r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 374 RYITDRFLPDKAIDLIDEAAARI 396 (852)
T ss_pred ccccccCCchHHHHHHHHHHHHH
Confidence 998763 44444444433
No 54
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.97 E-value=1.9e-09 Score=104.34 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=112.5
Q ss_pred CceEEEEEeccccc--ccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 6 GLTEVVESIGPELF--RKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 6 ~~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.+.+++.++.+.+. ++|.|+.+..++.+|+.++...|+||||||+|.|++.+...+.. .+.+.|...+.
T Consensus 234 ~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~-------~~a~lLkp~l~-- 304 (821)
T CHL00095 234 EDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI-------DAANILKPALA-- 304 (821)
T ss_pred cCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc-------cHHHHhHHHHh--
Confidence 46789999998887 68999999999999999998889999999999998765433211 12222333333
Q ss_pred CCCCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcC----CCC-CchhhHHHHHHHCCC
Q psy5642 84 VPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR----SPL-GEDVCVEELVRLTEG 153 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~----~~~-~~~~~~~~la~~t~g 153 (237)
++.+.+||+|+..+ ..|+++.+ ||.. |.++.|+.++...|++..... +.+ -++..+..++..+.+
T Consensus 305 --rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 305 --RGELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred --CCCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 46789999999764 57999999 9974 899999999999999865432 222 267778889999999
Q ss_pred CCccc------ccchhHHhhhh
Q psy5642 154 YSGAE------QSLSKHRAKKI 169 (237)
Q Consensus 154 ~s~~D------l~~~~~~a~~~ 169 (237)
|.+.. |..+...+..+
T Consensus 380 yi~~r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 380 YIADRFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred cCccccCchHHHHHHHHHHHHH
Confidence 98763 44444444433
No 55
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.76 E-value=9.9e-08 Score=86.66 Aligned_cols=131 Identities=19% Similarity=0.314 Sum_probs=86.7
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+..++++.+.++.+.+.+........-|..... .+.+|+|||++.+..++ .....++..++.....
T Consensus 178 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~-------------~~~~~l~~~~n~l~~~ 243 (450)
T PRK00149 178 NAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE-------------RTQEEFFHTFNALHEA 243 (450)
T ss_pred CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH-------------HHHHHHHHHHHHHHHC
Confidence 567888888887766554443322233333222 57899999999985432 1122344444333333
Q ss_pred CCEEEEEEeCCCCc---cchhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 87 NNVTIVAATNRPDR---IDKALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 87 ~~v~vI~ttn~~~~---ld~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+..+||++...|.. +++.+++ ||. ..+++..|+.++|..||+..+...+.. ++..+..||..+.|
T Consensus 244 ~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~ 314 (450)
T PRK00149 244 GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS 314 (450)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC
Confidence 44566666666665 6789999 996 589999999999999999988765543 56667778877643
No 56
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.76 E-value=1.4e-07 Score=84.45 Aligned_cols=141 Identities=18% Similarity=0.269 Sum_probs=88.3
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+..++++++.++...+.+.....-..-|..... .+.+|+|||++.+.... .....++..++.....
T Consensus 166 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~-------------~~~~~l~~~~n~~~~~ 231 (405)
T TIGR00362 166 NAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE-------------RTQEEFFHTFNALHEN 231 (405)
T ss_pred CCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH-------------HHHHHHHHHHHHHHHC
Confidence 567788888877655443322111112222222 46799999999985432 1122333444333233
Q ss_pred CCEEEEEEeCCCCc---cchhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccccc
Q psy5642 87 NNVTIVAATNRPDR---IDKALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQS 160 (237)
Q Consensus 87 ~~v~vI~ttn~~~~---ld~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~ 160 (237)
+..+||++...|.. +++.+++ ||. ..++++.|+.++|..||+..+...+.. ++..+..||....| +.++|+
T Consensus 232 ~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~ 308 (405)
T TIGR00362 232 GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELE 308 (405)
T ss_pred CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Confidence 44566666666665 5688998 996 479999999999999999998766554 66777888877654 445544
Q ss_pred chhH
Q psy5642 161 LSKH 164 (237)
Q Consensus 161 ~~~~ 164 (237)
-++.
T Consensus 309 ~~l~ 312 (405)
T TIGR00362 309 GALN 312 (405)
T ss_pred HHHH
Confidence 3333
No 57
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.74 E-value=2.3e-07 Score=82.70 Aligned_cols=138 Identities=13% Similarity=0.108 Sum_probs=88.4
Q ss_pred ceEEEEEeccccccc----------c-------cC-hHHHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCc
Q psy5642 7 LTEVVESIGPELFRK----------Y-------VG-ESERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSN 67 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~----------~-------~g-~~~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~ 67 (237)
++.+++++|....+. . .| .....+..+++.... ..+.||+|||+|.+.... .
T Consensus 85 ~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~-------- 155 (394)
T PRK00411 85 KVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G-------- 155 (394)
T ss_pred CcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C--------
Confidence 577888888654321 1 11 123344444444443 356899999999997221 1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC---ccchhccCCCCcc-cEEEecCCCHHHHHHHHHHHHcCC---CCCc
Q psy5642 68 VQERVLAQMLTEMDGIVPLNNVTIVAATNRPD---RIDKALLRPGRLD-RLIYVPLPDDLTRAAILKIRLARS---PLGE 140 (237)
Q Consensus 68 ~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~---~ld~al~r~gRf~-~~i~~~~P~~~~R~~il~~~l~~~---~~~~ 140 (237)
...+..++..++... ..++.+|+++|.+. .+++.+.+ ||. ..|+|++++.++..+||+..+... ..-.
T Consensus 156 --~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~ 230 (394)
T PRK00411 156 --NDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVD 230 (394)
T ss_pred --chHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCC
Confidence 135666776666543 23788889888764 56777777 774 578999999999999999887532 1124
Q ss_pred hhhHHHHHHHCCCCCcccc
Q psy5642 141 DVCVEELVRLTEGYSGAEQ 159 (237)
Q Consensus 141 ~~~~~~la~~t~g~s~~Dl 159 (237)
+..++.++..+.+. .+|+
T Consensus 231 ~~~l~~i~~~~~~~-~Gd~ 248 (394)
T PRK00411 231 DEVLDLIADLTARE-HGDA 248 (394)
T ss_pred HhHHHHHHHHHHHh-cCcH
Confidence 56667777777553 3353
No 58
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.66 E-value=1.2e-06 Score=77.23 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC-CCCCCEEEEEEeCCCC---cc
Q psy5642 27 ERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI-VPLNNVTIVAATNRPD---RI 101 (237)
Q Consensus 27 ~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~v~vI~ttn~~~---~l 101 (237)
.+.+..++..... ..|.||+|||+|.+.... ..++..++...+.. ....++.+|+++|.++ .+
T Consensus 114 ~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l 181 (365)
T TIGR02928 114 SEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENL 181 (365)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhc
Confidence 3445666665543 357899999999997221 12445555442211 1235789999999886 57
Q ss_pred chhccCCCCcc-cEEEecCCCHHHHHHHHHHHHc
Q psy5642 102 DKALLRPGRLD-RLIYVPLPDDLTRAAILKIRLA 134 (237)
Q Consensus 102 d~al~r~gRf~-~~i~~~~P~~~~R~~il~~~l~ 134 (237)
++.+.+ ||. ..|+|++++.++..+|++..+.
T Consensus 182 ~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 182 DPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 888888 885 6799999999999999998875
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.62 E-value=7.7e-07 Score=77.57 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=58.2
Q ss_pred CEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 88 NVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 88 ~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
++.+|++|+.+..+++++++ ||...+.++.|+.+++.++++......... ++..+..++..+.|.. +.
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~ 218 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RI 218 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hH
Confidence 47889999999999999999 999999999999999999999888766554 5667888999988754 44
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.60 E-value=1e-06 Score=75.80 Aligned_cols=100 Identities=20% Similarity=0.227 Sum_probs=74.4
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC----------------CCCCEEEEEEeCCCCccchh
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV----------------PLNNVTIVAATNRPDRIDKA 104 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vI~ttn~~~~ld~a 104 (237)
.+.+|||||+|.+.... ...|...+++.. ...++.+|++|+.+..++++
T Consensus 81 ~~~vl~iDEi~~l~~~~---------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~ 145 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAV---------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSP 145 (305)
T ss_pred cCCEEEEehHhhhCHHH---------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHH
Confidence 57899999999884321 122333332211 11348899999999999999
Q ss_pred ccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 105 LLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 105 l~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
+++ ||...+.+++|+.++..++++......... ++..+..++..+.|+. +.
T Consensus 146 l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~ 197 (305)
T TIGR00635 146 LRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RI 197 (305)
T ss_pred HHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-ch
Confidence 999 999899999999999999999887654443 5667788999988855 44
No 61
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.1e-07 Score=85.27 Aligned_cols=173 Identities=21% Similarity=0.295 Sum_probs=117.7
Q ss_pred ccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC---------C----CCC
Q psy5642 20 RKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG---------I----VPL 86 (237)
Q Consensus 20 ~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~----~~~ 86 (237)
--|+|..+..+-.-+..|+...| +++|||||.+..+-.++. .+.||.-||- + ..-
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP-----------aSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP-----------ASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh-----------HHHHHhhcCHhhcCchhhccccCccch
Confidence 35899999999999999999888 999999999975533221 3455555542 1 122
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
++|++|+|+|+.+.||..|+. |.. +|.++--+..+..+|.+.||=... -+.+|+...++...-...
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~-----------~~~~gL~~~el~i~d~ai 530 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQ-----------LKEHGLKKGELTITDEAI 530 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHH-----------HHHcCCCccceeecHHHH
Confidence 479999999999999999999 996 699999999999999998874221 122344444433333333
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccC-CccHHHHHHHHhh
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAA-YVSHQDFLTALQL 218 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~-~v~~~df~~al~~ 218 (237)
..+........+.+.....|..+|++++..-+....... .++..++..-|..
T Consensus 531 ~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 531 KDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 333333333333333444578888888887776554443 6777777776653
No 62
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.5e-07 Score=84.79 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=110.8
Q ss_pred ceEEEEEeccccc--ccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCC-CCCCchHHHHHHHHHHHhcCC
Q psy5642 7 LTEVVESIGPELF--RKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGG-GGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 7 ~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~ 83 (237)
+..++.++-..|. .+|.|+.+..++.+.+..+...+.||||||++.+.+..+..+. .+ ..+.|.-.|
T Consensus 226 ~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D-------AaNiLKPaL--- 295 (786)
T COG0542 226 DKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD-------AANLLKPAL--- 295 (786)
T ss_pred CCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc-------hhhhhHHHH---
Confidence 4455666665543 6899999999999999999988999999999999988766442 11 122233333
Q ss_pred CCCCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-----chhhHHHHHHHCCC
Q psy5642 84 VPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-----EDVCVEELVRLTEG 153 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g 153 (237)
.++.+-+||+|...+ +-|+||-| ||.. |.+..|+.++-..||+.+-.++... .+..+...+..+..
T Consensus 296 -ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~R 371 (786)
T COG0542 296 -ARGELRCIGATTLDEYRKYIEKDAALER--RFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDR 371 (786)
T ss_pred -hcCCeEEEEeccHHHHHHHhhhchHHHh--cCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHh
Confidence 236788999998755 56999999 9975 9999999999999999877665433 67778888888888
Q ss_pred CCccc------ccchhHHhhhh
Q psy5642 154 YSGAE------QSLSKHRAKKI 169 (237)
Q Consensus 154 ~s~~D------l~~~~~~a~~~ 169 (237)
|-+.- |..+...|.++
T Consensus 372 YI~dR~LPDKAIDLiDeA~a~~ 393 (786)
T COG0542 372 YIPDRFLPDKAIDLLDEAGARV 393 (786)
T ss_pred hcccCCCCchHHHHHHHHHHHH
Confidence 87733 44444444443
No 63
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.54 E-value=6.3e-07 Score=81.12 Aligned_cols=136 Identities=13% Similarity=0.227 Sum_probs=84.7
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+..++++++.++...+.......-..-|.......|.+|+|||++.+..... ....+...++.+...
T Consensus 160 ~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~-------------~q~elf~~~n~l~~~ 226 (440)
T PRK14088 160 DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTG-------------VQTELFHTFNELHDS 226 (440)
T ss_pred CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHH-------------HHHHHHHHHHHHHHc
Confidence 4577888888776554332211111123333334688999999998854321 112233333333333
Q ss_pred CCEEEEEEeCCCCc---cchhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 87 NNVTIVAATNRPDR---IDKALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 87 ~~v~vI~ttn~~~~---ld~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
+..+||++.+.|.. +.+.+++ ||. .++.+.+|+.+.|..|++..+...++. ++..+..||....| +.++
T Consensus 227 ~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~ 301 (440)
T PRK14088 227 GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRR 301 (440)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHH
Confidence 45566666667775 4577888 884 678999999999999999988755443 56667778877654 3344
No 64
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.52 E-value=2.5e-06 Score=82.23 Aligned_cols=159 Identities=19% Similarity=0.295 Sum_probs=100.9
Q ss_pred cccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC-------------CCCC
Q psy5642 21 KYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI-------------VPLN 87 (237)
Q Consensus 21 ~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~~ 87 (237)
.|.|.....+...+..+....| ||+|||+|.+...... ...+.|+..++.- ..-+
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-----------~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-----------DPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-----------CHHHHHHHHhccccEEEEecccccccccCC
Confidence 4677776777777777665555 8999999998654211 1245666666531 1226
Q ss_pred CEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcC-----CCCC------chhhHHHHHHH-CCCCC
Q psy5642 88 NVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR-----SPLG------EDVCVEELVRL-TEGYS 155 (237)
Q Consensus 88 ~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~-----~~~~------~~~~~~~la~~-t~g~s 155 (237)
++++|+|+|.. .||++|++ ||. .|.++.++.++..+|.+.++-. .... .+..+..++.. +..|.
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 79999999987 59999999 996 7999999999999999987741 1111 33344455531 12222
Q ss_pred cccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhc-cccCCccHHHHHHHHhh
Q psy5642 156 GAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENN-LEAAYVSHQDFLTALQL 218 (237)
Q Consensus 156 ~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~-~~~~~v~~~df~~al~~ 218 (237)
.+.|+.. |..+++......+..+ .....|+.+++...|..
T Consensus 541 aR~LeR~-----------------------I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 541 VRSLERE-----------------------ISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred CcHHHHH-----------------------HHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCC
Confidence 3332222 4445555444443332 23457888988888763
No 65
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.49 E-value=1.2e-06 Score=81.10 Aligned_cols=95 Identities=24% Similarity=0.193 Sum_probs=75.0
Q ss_pred EEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhHHhh
Q psy5642 89 VTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKHRAK 167 (237)
Q Consensus 89 v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~~a~ 167 (237)
.++++||+.|+.+++++++ |+. .++|+.++.+++.+|++..+++.... ++..++.++..+. .+++
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Re--------- 300 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGRE--------- 300 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHH---------
Confidence 5667778889999999999 985 68899999999999999999876654 5556666666553 5677
Q ss_pred hhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 168 KIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
+.++++.|...+..++ ...|+.+|+..++.
T Consensus 301 ------------------l~nll~~Aa~~A~~~~--~~~It~~dI~~vl~ 330 (531)
T TIGR02902 301 ------------------AVNIVQLAAGIALGEG--RKRILAEDIEWVAE 330 (531)
T ss_pred ------------------HHHHHHHHHHHHhhCC--CcEEcHHHHHHHhC
Confidence 8888888877665544 34699999999987
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.49 E-value=4.5e-06 Score=79.86 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=99.7
Q ss_pred ceEEEEEeccccccccc----------------C-hHHHHHHHHHHHHHh--cCCeEEEEccccccccccCCCCCCCCCc
Q psy5642 7 LTEVVESIGPELFRKYV----------------G-ESERCVRDVFKRARQ--VSPSVIFFDELDSLAGERGDGGGGGGSN 67 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~----------------g-~~~~~l~~~f~~a~~--~~P~il~iDeid~l~~~~~~~~~~~~~~ 67 (237)
.+.+++|+|..+.+.+. | .+...+..+|..... ..+.||+|||||.|....
T Consensus 816 ~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~---------- 885 (1164)
T PTZ00112 816 SFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT---------- 885 (1164)
T ss_pred CceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------
Confidence 36788999965433321 1 234567777776532 246799999999996531
Q ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEEEeCC---CCccchhccCCCCccc-EEEecCCCHHHHHHHHHHHHcCCC-CCchh
Q psy5642 68 VQERVLAQMLTEMDGIVPLNNVTIVAATNR---PDRIDKALLRPGRLDR-LIYVPLPDDLTRAAILKIRLARSP-LGEDV 142 (237)
Q Consensus 68 ~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~---~~~ld~al~r~gRf~~-~i~~~~P~~~~R~~il~~~l~~~~-~~~~~ 142 (237)
+.++-.|..+... ...+++|||.+|. ++.+++.+++ ||.. .|.|++++.++..+||+..+.... .-.+.
T Consensus 886 --QDVLYnLFR~~~~--s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDd 959 (1164)
T PTZ00112 886 --QKVLFTLFDWPTK--INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHT 959 (1164)
T ss_pred --HHHHHHHHHHhhc--cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHH
Confidence 3455556665442 3457999999986 5677888888 7753 488899999999999998887532 22556
Q ss_pred hHHHHHHHCCCCCcccccchhHHhhhhcc
Q psy5642 143 CVEELVRLTEGYSGAEQSLSKHRAKKIRP 171 (237)
Q Consensus 143 ~~~~la~~t~g~s~~Dl~~~~~~a~~~~~ 171 (237)
.+.-+|.+.. ...+|++..++.++.+..
T Consensus 960 AIELIArkVA-q~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 960 AIQLCARKVA-NVSGDIRKALQICRKAFE 987 (1164)
T ss_pred HHHHHHHhhh-hcCCHHHHHHHHHHHHHh
Confidence 6666777554 446787766666555543
No 67
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.48 E-value=3.2e-06 Score=78.62 Aligned_cols=139 Identities=16% Similarity=0.227 Sum_probs=88.5
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+..++++.+.+|...+...........|..-. ..+.+|+||||+.+..+.. .+..+-.+++.+.+ .
T Consensus 344 g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke~----------tqeeLF~l~N~l~e---~ 409 (617)
T PRK14086 344 GTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKES----------TQEEFFHTFNTLHN---A 409 (617)
T ss_pred CCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCHH----------HHHHHHHHHHHHHh---c
Confidence 46778888888877666544443333454333 3578999999999865421 12223334444432 2
Q ss_pred CCEEEEEEeCCCC---ccchhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccccc
Q psy5642 87 NNVTIVAATNRPD---RIDKALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQS 160 (237)
Q Consensus 87 ~~v~vI~ttn~~~---~ld~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~ 160 (237)
++-+||.+...|. .+++.|++ ||. .++.+..|+.+.|..||+.......+. ++..+..|+.+.++ +.++|+
T Consensus 410 gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~Le 486 (617)
T PRK14086 410 NKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELE 486 (617)
T ss_pred CCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHH
Confidence 3334443333344 56889999 994 677999999999999999988776665 56667777777643 344433
Q ss_pred ch
Q psy5642 161 LS 162 (237)
Q Consensus 161 ~~ 162 (237)
-+
T Consensus 487 ga 488 (617)
T PRK14086 487 GA 488 (617)
T ss_pred HH
Confidence 33
No 68
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=2e-06 Score=77.86 Aligned_cols=129 Identities=9% Similarity=0.204 Sum_probs=77.2
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLN 87 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 87 (237)
..++++.+..+...+.......-...|.... ..+.+|+|||++.+.+... .+..+-.+++.+. ..+
T Consensus 170 ~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~----------~qeelf~l~N~l~---~~~ 235 (445)
T PRK12422 170 GKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA----------TQEEFFHTFNSLH---TEG 235 (445)
T ss_pred CCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh----------hHHHHHHHHHHHH---HCC
Confidence 5566777665544332221111111233322 3577999999998754321 1222223333322 223
Q ss_pred CEEEEEEeCCCC---ccchhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 88 NVTIVAATNRPD---RIDKALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 88 ~v~vI~ttn~~~---~ld~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
+.+|++++..|. .+++.+++ ||. ..+.+..|+.+.|..||+......++. ++..+..+|....
T Consensus 236 k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~ 304 (445)
T PRK12422 236 KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALS 304 (445)
T ss_pred CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Confidence 445555555554 56799999 996 789999999999999999988766554 5556666777554
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=7e-06 Score=77.73 Aligned_cols=122 Identities=19% Similarity=0.197 Sum_probs=92.0
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.+++++.++- .+...++.+++.+.. ....|+||||+|.|.. ...+.||..|++.
T Consensus 89 DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLKtLEEP- 146 (830)
T PRK07003 89 DYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLKTLEEP- 146 (830)
T ss_pred eEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHHHHHhc-
Confidence 4677766531 234456666666553 2346999999999832 3467888888883
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCc
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSG 156 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~ 156 (237)
..++.+|.+||+++.|.+.|++ |+ ..+.|..++.++..+.|+..+...++. .+..+..|+..+.|-..
T Consensus 147 -P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 147 -PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred -CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 4578999999999999999999 98 469999999999999999988766554 66778888888877543
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=8e-06 Score=76.29 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=88.5
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.++++++..- .+...++++.+.+.. ....|++|||+|.+.. ...+.||..|++
T Consensus 94 DviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaNALLKTLEE-- 150 (700)
T PRK12323 94 DYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFNAMLKTLEE-- 150 (700)
T ss_pred cceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHHHHHHhhcc--
Confidence 5777777521 224455566555543 2356999999999832 346889998888
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCC
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGY 154 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 154 (237)
...++++|.+|++++.|.+.|++ |. ..+.|+.++.++..+.|+..+...++. .+..+..|+..+.|-
T Consensus 151 PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs 218 (700)
T PRK12323 151 PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGS 218 (700)
T ss_pred CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 44678899999999999999999 98 569999999999999999888665544 344567777776653
No 71
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.27 E-value=2.2e-05 Score=68.92 Aligned_cols=119 Identities=19% Similarity=0.276 Sum_probs=86.3
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.++.+++.. +.+...++.+++.+... ..-||+|||+|.+.. ...+.++..+++.
T Consensus 87 ~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~~~~Ll~~le~~- 144 (355)
T TIGR02397 87 DVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SAFNALLKTLEEP- 144 (355)
T ss_pred CEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HHHHHHHHHHhCC-
Confidence 455665542 12345677888877653 234999999988732 2456788888763
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
...+++|.+|++++.+.+.+++ |+. .+++++|+..+...+++..+...+.. ++..+..++..+.|
T Consensus 145 -~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 145 -PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred -ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3467778888889999999999 884 68999999999999999988766544 45666777776654
No 72
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.9e-05 Score=73.52 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=93.0
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
...+++++++. +.+...++.+.+.+... ..-|++|||+|.+.. ...+.|+..+++
T Consensus 87 ~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~naLLKtLEe 145 (559)
T PRK05563 87 LMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNALLKTLEE 145 (559)
T ss_pred CCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHHhcC
Confidence 34567777642 24566788888887652 245999999998832 246788888887
Q ss_pred CCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 83 IVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 83 ~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
. ...+++|.+|+.+..+++.|++ |+. .+.|+.|+..+....++..+...+.. .+..+..++..+.| +.++
T Consensus 146 p--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~ 216 (559)
T PRK05563 146 P--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRD 216 (559)
T ss_pred C--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 3 3567777777889999999999 885 58999999999999999988776654 45667778887765 5555
No 73
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.24 E-value=3.9e-05 Score=68.84 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=93.0
Q ss_pred ceEEEEEeccccc-ccccChH-HHHHHHHHHHH----HhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh
Q psy5642 7 LTEVVESIGPELF-RKYVGES-ERCVRDVFKRA----RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM 80 (237)
Q Consensus 7 ~~~~i~v~~s~l~-~~~~g~~-~~~l~~~f~~a----~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 80 (237)
+.||+.++++.+. ..|+|+. +..+..++..+ ....++||||||+|.+...+.+.+ .+.+.....+.+.||..|
T Consensus 133 ~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~-~~~d~s~~~vQ~~LL~~L 211 (412)
T PRK05342 133 DVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKIL 211 (412)
T ss_pred CCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC-cCCCcccHHHHHHHHHHH
Confidence 5789999998875 4688865 44556665532 234789999999999987633211 111111135678888888
Q ss_pred cCCC-----------CCCCEEEEEEeCCCC--------------------------------------------------
Q psy5642 81 DGIV-----------PLNNVTIVAATNRPD-------------------------------------------------- 99 (237)
Q Consensus 81 ~~~~-----------~~~~v~vI~ttn~~~-------------------------------------------------- 99 (237)
++.. ...+.++|.|+|-..
T Consensus 212 eg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~ 291 (412)
T PRK05342 212 EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLI 291 (412)
T ss_pred hcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHH
Confidence 7531 011245666655400
Q ss_pred --ccchhccCCCCcccEEEecCCCHHHHHHHHHH----HHc-------CCCCC---chhhHHHHHHH--CCCCCccc
Q psy5642 100 --RIDKALLRPGRLDRLIYVPLPDDLTRAAILKI----RLA-------RSPLG---EDVCVEELVRL--TEGYSGAE 158 (237)
Q Consensus 100 --~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~----~l~-------~~~~~---~~~~~~~la~~--t~g~s~~D 158 (237)
.+.|+++. |++.++.|...+.++..+|+.. +++ ...+. .+..+..||++ ..+|..+-
T Consensus 292 ~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~ 366 (412)
T PRK05342 292 KFGLIPEFIG--RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARG 366 (412)
T ss_pred HHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCch
Confidence 13566666 9999999999999999999972 332 22222 55666777775 34555555
No 74
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=2.4e-05 Score=71.10 Aligned_cols=136 Identities=14% Similarity=0.193 Sum_probs=82.9
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHH--hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRAR--QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~--~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.+..++++.+.++...+........ ..+...+ ...+.+|+|||++.+..+. .....+-.+++.+..
T Consensus 170 ~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~~~~~dvLiIDDiq~l~~k~----------~~~e~lf~l~N~~~~- 237 (450)
T PRK14087 170 SDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNEICQNDVLIIDDVQFLSYKE----------KTNEIFFTIFNNFIE- 237 (450)
T ss_pred CCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHHhccCCEEEEeccccccCCH----------HHHHHHHHHHHHHHH-
Confidence 3567788888887766554433211 1122221 2356799999999885432 112333444444333
Q ss_pred CCCCCEEEEEEeCCCCc---cchhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCC---CchhhHHHHHHHCCCCC
Q psy5642 84 VPLNNVTIVAATNRPDR---IDKALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPL---GEDVCVEELVRLTEGYS 155 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~---ld~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~---~~~~~~~~la~~t~g~s 155 (237)
.++-+|+.+...|+. +++.+++ ||. ..+.+..|+.++|.+||+..+...+. -++..+..||..+.| +
T Consensus 238 --~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d 312 (450)
T PRK14087 238 --NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-D 312 (450)
T ss_pred --cCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-C
Confidence 234344444444554 4789999 995 77889999999999999998876543 255666667776654 4
Q ss_pred ccc
Q psy5642 156 GAE 158 (237)
Q Consensus 156 ~~D 158 (237)
++.
T Consensus 313 ~R~ 315 (450)
T PRK14087 313 VRK 315 (450)
T ss_pred HHH
Confidence 444
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3e-05 Score=70.80 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=85.2
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.++.++++.- .+...++.+.+.+... ...||+|||+|.+.. ...+.|+..++..
T Consensus 87 dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~~LLk~LE~p- 144 (472)
T PRK14962 87 DVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAFNALLKTLEEP- 144 (472)
T ss_pred ccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHHHHHHHHHHhC-
Confidence 5666766421 1234566666665532 346999999998832 2356778888773
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
.+.+++|++|+.+..+++++++ |+. .++|..|+.++...+++..+...+.. .+..+..|+..+.
T Consensus 145 -~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 145 -PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred -CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 3567788888888999999999 985 79999999999999999888655443 5666777888654
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.8e-05 Score=71.44 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=92.8
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
..++++++.. ..+...++.+++.+... ...|++|||+|.+.. ...+.|+..|+.
T Consensus 97 ~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~naLLk~LEe- 154 (507)
T PRK06645 97 PDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAFNALLKTLEE- 154 (507)
T ss_pred CcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHHHHHHHHHhh-
Confidence 3566666642 12456778888877643 245999999988732 346778888886
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
....+++|++|+.++.+++.+++ |. ..++|+.++.++...+++..+...+.. .+..+..++..+.| +.++
T Consensus 155 -pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~ 225 (507)
T PRK06645 155 -PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARD 225 (507)
T ss_pred -cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 34567778788889999999998 88 469999999999999999999876654 55667888888876 6666
No 77
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.20 E-value=1.4e-05 Score=65.58 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=73.9
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLN 87 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 87 (237)
.++++++|+++.... ..++.... .+.+|+|||+|.+.... .. ...+..++..+.. .+
T Consensus 67 ~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---------~~-~~~L~~~l~~~~~---~~ 123 (226)
T TIGR03420 67 KSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---------EW-QEALFHLYNRVRE---AG 123 (226)
T ss_pred CcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---------HH-HHHHHHHHHHHHH---cC
Confidence 467788888775432 23333332 34699999999874321 00 1223333333322 22
Q ss_pred CEEEEEEeCCCCccc---hhccCCCCc--ccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 88 NVTIVAATNRPDRID---KALLRPGRL--DRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 88 ~v~vI~ttn~~~~ld---~al~r~gRf--~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
..+|+.++..+..++ +.+.+ || ...+.++.|+.+++..+++.+....+.. ++..+..|+.. -+-++++
T Consensus 124 ~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~ 197 (226)
T TIGR03420 124 GRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGS 197 (226)
T ss_pred CeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHH
Confidence 344444444454443 77787 76 4789999999999999999877655443 45556666663 3444555
No 78
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.3e-05 Score=69.35 Aligned_cols=111 Identities=15% Similarity=0.243 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+... ...|++|||+|.+.. ...+.++..++.. ...+.+|.+|+.++.+.
T Consensus 101 v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLLk~lEe~--~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 101 VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALLKTLEEP--PQHIKFILATTDVEKIP 163 (363)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHHHHHhcC--CCCeEEEEEcCChHhhh
Confidence 45567777665432 235999999998721 2356788888873 34677777888899999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
+.+++ |+ ..++|++|+.++..++++..+...+.. ++..+..++..+.| ++++
T Consensus 164 ~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~ 216 (363)
T PRK14961 164 KTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRD 216 (363)
T ss_pred HHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 99998 88 479999999999999999988776543 55677778887755 4444
No 79
>PRK04132 replication factor C small subunit; Provisional
Probab=98.18 E-value=4.5e-05 Score=73.66 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=92.4
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcC------CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVS------PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM 80 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~------P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 80 (237)
+.+++++++++-.+ ...++.+...+.... ..|++|||+|.+.. ...+.|+..|
T Consensus 596 ~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~---------------~AQnALLk~l 654 (846)
T PRK04132 596 RHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------DAQQALRRTM 654 (846)
T ss_pred cCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH---------------HHHHHHHHHh
Confidence 35799999997543 346666665544333 25999999999932 2357788888
Q ss_pred cCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 81 DGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 81 ~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+.. .+++.+|.+||+++.+.++|++ |. ..+.|+.|+.++-...|+......++. ++..+..++..+.|
T Consensus 655 Eep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 655 EMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred hCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 873 3578899999999999999999 86 579999999999999999887765543 56677788877765
No 80
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.8e-05 Score=75.26 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=87.2
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
....|+++++..-. .+.+.......++.........|+||||+|.|.. ...+.||+.|++.
T Consensus 87 ~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaLLK~LEEp-- 147 (824)
T PRK07764 87 GSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNALLKIVEEP-- 147 (824)
T ss_pred CCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHHHHHHhCC--
Confidence 34557777664321 1222222222222222233456999999999833 3467899999984
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
...+++|++|+.++.|.+.|++ |. .++.|..++.++-..+|+..+...++. .+..+..++..+.| +.++
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~ 217 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRD 217 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 3577788888888999999998 87 469999999999999999888766554 44556667776654 4444
No 81
>PRK04195 replication factor C large subunit; Provisional
Probab=98.14 E-value=0.00014 Score=66.72 Aligned_cols=130 Identities=16% Similarity=0.192 Sum_probs=87.1
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhc------CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQV------SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~------~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
.+++++++++..+ ...++.+...+... .+.+|+|||+|.+..... ......++..+.
T Consensus 65 ~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-----------~~~~~aL~~~l~ 127 (482)
T PRK04195 65 WEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-----------RGGARAILELIK 127 (482)
T ss_pred CCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-----------hhHHHHHHHHHH
Confidence 4677888876542 23445554444332 477999999999865211 123455666665
Q ss_pred CCCCCCCEEEEEEeCCCCccch-hccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccc
Q psy5642 82 GIVPLNNVTIVAATNRPDRIDK-ALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQ 159 (237)
Q Consensus 82 ~~~~~~~v~vI~ttn~~~~ld~-al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl 159 (237)
. .+..+|.++|.+..++. .+++ |. ..|.|+.|+..+...+|+..+...+.. .+..+..|+..+ ++|+
T Consensus 128 ~----~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDl 196 (482)
T PRK04195 128 K----AKQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDL 196 (482)
T ss_pred c----CCCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCH
Confidence 4 23456778899998887 5665 44 579999999999999999988766554 566788888876 4575
Q ss_pred cchhHH
Q psy5642 160 SLSKHR 165 (237)
Q Consensus 160 ~~~~~~ 165 (237)
..++..
T Consensus 197 R~ain~ 202 (482)
T PRK04195 197 RSAIND 202 (482)
T ss_pred HHHHHH
Confidence 554443
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.12 E-value=0.00015 Score=63.02 Aligned_cols=99 Identities=14% Similarity=0.201 Sum_probs=68.6
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPD 121 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~ 121 (237)
+.+|+|||+|.+.. .....|...++... ....+|.+++.+..+.+.+++ |+ ..+.+.+|+
T Consensus 126 ~~vlilDe~~~l~~---------------~~~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~ 185 (337)
T PRK12402 126 YKTILLDNAEALRE---------------DAQQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPT 185 (337)
T ss_pred CcEEEEeCcccCCH---------------HHHHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCC
Confidence 45999999998732 12334555555533 234456667777788888888 76 468999999
Q ss_pred HHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhH
Q psy5642 122 DLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 122 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
.++...+++..+...+.. ++..+..++..+ ++|+..++.
T Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~----~gdlr~l~~ 225 (337)
T PRK12402 186 DDELVDVLESIAEAEGVDYDDDGLELIAYYA----GGDLRKAIL 225 (337)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHH
Confidence 999999999988766654 566777777765 566444333
No 83
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.6e-05 Score=71.88 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=89.4
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.+++++++. ..+...++.+.+.+... ...|++|||+|.+.. ...+.|+..|+..
T Consensus 89 d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~naLLk~LEep- 146 (509)
T PRK14958 89 DLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSFNALLKTLEEP- 146 (509)
T ss_pred eEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHHHHHHHHHhcc-
Confidence 477787652 12344566666655431 235999999999843 2367888888884
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
...+.+|.+|+.+..+++.|++ |. ..++|..++..+-...++..+...+.. .+..+..++..+.| +.++
T Consensus 147 -p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~ 216 (509)
T PRK14958 147 -PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRD 216 (509)
T ss_pred -CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHH
Confidence 3567788888889999999998 88 468999999999888888888766554 55667778887754 5556
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=1.7e-05 Score=70.70 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+++.+... ...|++|||+|.+.. ...+.|+..|++. ..++++|.+|++++.+.
T Consensus 99 i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------~aanaLLk~LEep--~~~~~fIL~a~~~~~ll 161 (394)
T PRK07940 99 VDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------RAANALLKAVEEP--PPRTVWLLCAPSPEDVL 161 (394)
T ss_pred HHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------HHHHHHHHHhhcC--CCCCeEEEEECChHHCh
Confidence 44578888877652 235999999999933 2357788888873 34555666666699999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccc
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQ 159 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl 159 (237)
|.|++ |+ ..++|+.|+.++..++|.... +. +......++..+.|..+..+
T Consensus 162 pTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 162 PTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRAR 211 (394)
T ss_pred HHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHH
Confidence 99999 98 479999999999887776322 23 34556778888888776553
No 85
>KOG2004|consensus
Probab=98.09 E-value=1.1e-05 Score=75.08 Aligned_cols=100 Identities=27% Similarity=0.409 Sum_probs=78.7
Q ss_pred ccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC---------C----CCC
Q psy5642 20 RKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG---------I----VPL 86 (237)
Q Consensus 20 ~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~----~~~ 86 (237)
--|+|.++..+-..+..++...| +++|||+|.+.. +-.++. .+.||..||- + ..-
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~qGDP---------asALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQGDP---------ASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCCCCh---------HHHHHHhcChhhccchhhhccccccch
Confidence 35899999999999999998888 999999999972 222211 2445554442 1 123
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHc
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~ 134 (237)
++|++|+|+|..+.||+.|+. |.. +|+++--..++...|-+.||-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 579999999999999999999 996 699999999999999998874
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3.1e-05 Score=70.31 Aligned_cols=108 Identities=12% Similarity=0.127 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+.. ....|++|||+|.+.. ...+.||..|++ ...++++|++|+.+..|+
T Consensus 103 Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLKtLEE--Pp~~viFILaTte~~kI~ 165 (484)
T PRK14956 103 IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLKTLEE--PPAHIVFILATTEFHKIP 165 (484)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHHHHhhc--CCCceEEEeecCChhhcc
Confidence 4455666555542 2456999999999832 356888888877 446788999999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGY 154 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 154 (237)
+.|++ |.. .+.|..++.++-.+.++..+...++. .+..+..+|..+.|-
T Consensus 166 ~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 166 ETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred HHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh
Confidence 99999 985 58999999999999999888766554 566778888877764
No 87
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=9.8e-05 Score=67.50 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=95.7
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
....++++++++- .+...++.+.+.+... ..-|++|||+|.+.. ...+.|+..|+
T Consensus 83 ~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~NaLLK~LE 141 (491)
T PRK14964 83 NHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFNALLKTLE 141 (491)
T ss_pred CCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHHHHHHHHh
Confidence 3456788888632 2356677777777543 345999999988732 34678899999
Q ss_pred CCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccc
Q psy5642 82 GIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQ 159 (237)
Q Consensus 82 ~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl 159 (237)
+. ...+.+|.+|+.+..+++.+++ |+. .++|..++.++....++..+.+.+.. .+..+..++..+.| +.+++
T Consensus 142 eP--p~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~a 214 (491)
T PRK14964 142 EP--APHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNA 214 (491)
T ss_pred CC--CCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 83 3567788888889999999999 884 59999999999999999988776654 66778888888865 55663
No 88
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.06 E-value=0.00021 Score=64.31 Aligned_cols=116 Identities=21% Similarity=0.306 Sum_probs=78.3
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
+.+|+.+++... +...++.+++.+.. ..+.||||||+|.+.. .....|+..+++
T Consensus 61 ~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~---------------~~q~~LL~~le~ 118 (413)
T PRK13342 61 DAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK---------------AQQDALLPHVED 118 (413)
T ss_pred CCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH---------------HHHHHHHHHhhc
Confidence 346777776532 34566777777643 2568999999998732 123455666654
Q ss_pred CCCCCCEEEEEEeC-C-CCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC--CC-C-chhhHHHHHHHC
Q psy5642 83 IVPLNNVTIVAATN-R-PDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS--PL-G-EDVCVEELVRLT 151 (237)
Q Consensus 83 ~~~~~~v~vI~ttn-~-~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~--~~-~-~~~~~~~la~~t 151 (237)
+.+++|++|+ . ...+++++++ |+ ..+.++.|+.++...+++..+... +. . .+..+..++..+
T Consensus 119 ----~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s 186 (413)
T PRK13342 119 ----GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLA 186 (413)
T ss_pred ----CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC
Confidence 4567776653 3 4489999999 98 679999999999999999877542 11 1 445566677665
No 89
>PRK08727 hypothetical protein; Validated
Probab=98.05 E-value=9.1e-05 Score=61.48 Aligned_cols=106 Identities=28% Similarity=0.400 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc---chhcc
Q psy5642 30 VRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI---DKALL 106 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l---d~al~ 106 (237)
+.++++... +..+|+|||++.+..... ....+-.+++.+.. .+.-+|+.+...|..+ +++++
T Consensus 84 ~~~~~~~l~--~~dlLiIDDi~~l~~~~~----------~~~~lf~l~n~~~~---~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 84 LRDALEALE--GRSLVALDGLESIAGQRE----------DEVALFDFHNRARA---AGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred HHHHHHHHh--cCCEEEEeCcccccCChH----------HHHHHHHHHHHHHH---cCCeEEEECCCChhhhhhhhHHHH
Confidence 344444433 457999999998864321 12233344444432 2222344444467766 69999
Q ss_pred CCCCc--ccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 107 RPGRL--DRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 107 r~gRf--~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
+ || ...+.++.|+.++|.++++......++. ++..+..|+..++
T Consensus 149 S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~ 195 (233)
T PRK08727 149 S--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGE 195 (233)
T ss_pred H--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 9 98 5678999999999999999866544443 6667777888764
No 90
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=6.8e-05 Score=70.34 Aligned_cols=124 Identities=13% Similarity=0.158 Sum_probs=91.6
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
..++++++++- .+...+|.+.+.+.. ....|++|||+|.+.. ...+.|+..|+..
T Consensus 87 pDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~NALLKtLEEP 145 (702)
T PRK14960 87 IDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFNALLKTLEEP 145 (702)
T ss_pred CceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHHHHHHHHhcC
Confidence 36777777532 124556777666543 2346999999998832 2467788888873
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
.+.+.+|++|+.+..+++.+++ |+. .++|..++..+-...++..+.+.+.. .+..+..++..+.| +.++
T Consensus 146 --P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRd 215 (702)
T PRK14960 146 --PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRD 215 (702)
T ss_pred --CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 3567788888899999999998 884 69999999999999999988776654 56778888887765 4444
No 91
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=4.9e-05 Score=71.51 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=88.6
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.|++++++.- .+...++.+.+.+.. ...-|++|||+|.+.. ...+.||..|++
T Consensus 89 D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLKtLEE-- 145 (647)
T PRK07994 89 DLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKTLEE-- 145 (647)
T ss_pred Cceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHHHHHc--
Confidence 4666766431 123445555555443 2345999999999832 357889999998
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCc
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSG 156 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~ 156 (237)
..+++.+|.+|+.++.|.+.|++ |. ..++|+.++.++-...|+..+...++. .+..+..++..+.|-..
T Consensus 146 Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 146 PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 44578888888999999999999 96 679999999999999999888655543 55667778877766433
No 92
>PRK06893 DNA replication initiation factor; Validated
Probab=97.99 E-value=6.9e-05 Score=62.04 Aligned_cols=99 Identities=11% Similarity=0.200 Sum_probs=66.1
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCC-CEEEEEEeCCCCccc---hhccCCCCcccEEE
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLN-NVTIVAATNRPDRID---KALLRPGRLDRLIY 116 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~vI~ttn~~~~ld---~al~r~gRf~~~i~ 116 (237)
++.+|+|||++.+.++.. ....+-.+++.+ ...+ .+++++++..|..++ +.+++..++...+.
T Consensus 91 ~~dlLilDDi~~~~~~~~----------~~~~l~~l~n~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~ 157 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE----------WELAIFDLFNRI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQ 157 (229)
T ss_pred cCCEEEEeChhhhcCChH----------HHHHHHHHHHHH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeee
Confidence 467999999999864321 122233344433 2223 355666666788776 88998222357899
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 117 VPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 117 ~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
++.|+.++|.+||+.......+. ++..+..|+.+.+
T Consensus 158 l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~ 194 (229)
T PRK06893 158 LNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLD 194 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc
Confidence 99999999999999877655544 5666677777664
No 93
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.99 E-value=0.00019 Score=64.31 Aligned_cols=149 Identities=16% Similarity=0.234 Sum_probs=94.1
Q ss_pred ceEEEEEeccccc-ccccChH-HHHHHHHHHHH----HhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh
Q psy5642 7 LTEVVESIGPELF-RKYVGES-ERCVRDVFKRA----RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM 80 (237)
Q Consensus 7 ~~~~i~v~~s~l~-~~~~g~~-~~~l~~~f~~a----~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 80 (237)
+.+|..++++.+. ..|+|.. +..+..++..+ ....|+||||||+|.+...+.+.+- +.......+.+.||+.|
T Consensus 141 ~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~-~~dvsg~~vq~~LL~iL 219 (413)
T TIGR00382 141 NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSI-TRDVSGEGVQQALLKII 219 (413)
T ss_pred CCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccc-cccccchhHHHHHHHHh
Confidence 4688889988875 3588874 55666666543 2347899999999999875432211 00111124667778877
Q ss_pred cCCCC-----------CCCEEEEEEeCCC---------------------------C-----------------------
Q psy5642 81 DGIVP-----------LNNVTIVAATNRP---------------------------D----------------------- 99 (237)
Q Consensus 81 ~~~~~-----------~~~v~vI~ttn~~---------------------------~----------------------- 99 (237)
++... ..+.++|.|+|-. +
T Consensus 220 eG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~ 299 (413)
T TIGR00382 220 EGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKF 299 (413)
T ss_pred hccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 65421 1246788887761 0
Q ss_pred ccchhccCCCCcccEEEecCCCHHHHHHHHHHH----HcC-------CCCC---chhhHHHHHHHC--CCCCccc
Q psy5642 100 RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIR----LAR-------SPLG---EDVCVEELVRLT--EGYSGAE 158 (237)
Q Consensus 100 ~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~----l~~-------~~~~---~~~~~~~la~~t--~g~s~~D 158 (237)
.+.|+++. |++.++.|...+.++..+|+... ++. ..+. .+..+..||++. .+|..+-
T Consensus 300 g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~ 372 (413)
T TIGR00382 300 GLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARG 372 (413)
T ss_pred hhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchH
Confidence 14467776 99999999999999999998652 221 1221 456677777763 3455555
No 94
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.99 E-value=4.1e-06 Score=54.71 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=30.5
Q ss_pred cCCccHHHHHHHHhhcCCCCCHHHHHHHHHHhhC
Q psy5642 204 AAYVSHQDFLTALQLVKPRTPPQLIKLYENYIKK 237 (237)
Q Consensus 204 ~~~v~~~df~~al~~~~p~~~~~~~~~~~~~~~~ 237 (237)
.++|+.+||..||+..+|+++.+++++|++|.++
T Consensus 27 ~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~ 60 (62)
T PF09336_consen 27 EPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKE 60 (62)
T ss_dssp HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4479999999999999999999999999999873
No 95
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=8.1e-05 Score=69.84 Aligned_cols=122 Identities=21% Similarity=0.252 Sum_probs=89.3
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhcCC-----eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQVSP-----SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P-----~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.++++++..- .+...++++.+.+.. .| -|++|||+|.+.. ...+.|+..|++
T Consensus 94 D~~eldaas~------~~Vd~iReli~~~~~-~p~~g~~KV~IIDEvh~Ls~---------------~a~NaLLKtLEE- 150 (618)
T PRK14951 94 DYTELDAASN------RGVDEVQQLLEQAVY-KPVQGRFKVFMIDEVHMLTN---------------TAFNAMLKTLEE- 150 (618)
T ss_pred ceeecCcccc------cCHHHHHHHHHHHHh-CcccCCceEEEEEChhhCCH---------------HHHHHHHHhccc-
Confidence 4666665421 234567777776654 33 4999999999833 236778888887
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
....+.+|.+|+.++.+.+.+++ |. ..++|..++.++....|+..+...++. .+..+..|+..+.| +.++
T Consensus 151 -PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~ 221 (618)
T PRK14951 151 -PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRD 221 (618)
T ss_pred -CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 33567788888889999999998 87 579999999999999999888766654 45667788887765 4444
No 96
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00026 Score=65.33 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCC-----eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 27 ERCVRDVFKRARQVSP-----SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P-----~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
-..++.+...+.. .| -|++|||+|.+. ....+.|+..|+.. ...+.+|.+|+.+..+
T Consensus 99 Id~IRelie~~~~-~P~~~~~KVvIIDEad~Lt---------------~~A~NALLK~LEEp--p~~t~FIL~ttd~~kL 160 (535)
T PRK08451 99 IDDIRELIEQTKY-KPSMARFKIFIIDEVHMLT---------------KEAFNALLKTLEEP--PSYVKFILATTDPLKL 160 (535)
T ss_pred HHHHHHHHHHHhh-CcccCCeEEEEEECcccCC---------------HHHHHHHHHHHhhc--CCceEEEEEECChhhC
Confidence 4566666665443 33 499999998872 23467889999884 3457777778889999
Q ss_pred chhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 102 DKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 102 d~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
.+.|++ |. ..++|.+++.++-...++..+...+.. .+..+..++..+.| +.++
T Consensus 161 ~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~ 214 (535)
T PRK08451 161 PATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRD 214 (535)
T ss_pred chHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHH
Confidence 999999 85 579999999999999999888766554 55677778887665 5555
No 97
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.94 E-value=1.4e-05 Score=65.71 Aligned_cols=131 Identities=20% Similarity=0.292 Sum_probs=74.3
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+..++++++.++...+.......-..-|..-. ....+|+|||++.+..+ ......+...++....
T Consensus 63 ~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~-------------~~~q~~lf~l~n~~~~ 128 (219)
T PF00308_consen 63 PGKRVVYLSAEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGK-------------QRTQEELFHLFNRLIE 128 (219)
T ss_dssp TTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTH-------------HHHHHHHHHHHHHHHH
T ss_pred ccccceeecHHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCc-------------hHHHHHHHHHHHHHHh
Confidence 345566666666654433322221111122111 24579999999998543 1223444444444434
Q ss_pred CCCEEEEEEeCCCCc---cchhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 86 LNNVTIVAATNRPDR---IDKALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~---ld~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
.++-+|+.+-..|.. +++.+++ ||. ..+.+..|+.+.|..|++......+.. ++..+..|+...+
T Consensus 129 ~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~ 199 (219)
T PF00308_consen 129 SGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR 199 (219)
T ss_dssp TTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT
T ss_pred hCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc
Confidence 456666666666765 4688888 986 488999999999999999988776665 5666666777753
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.94 E-value=0.00016 Score=57.87 Aligned_cols=102 Identities=14% Similarity=0.226 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+... .+.|++|||+|.+.. ...+.|+..|+.. ....++|.+|+++..+.
T Consensus 78 ~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 78 VDQVRELVEFLSRTPQESGRRVVIIEDAERMNE---------------AAANALLKTLEEP--PPNTLFILITPSPEKLL 140 (188)
T ss_pred HHHHHHHHHHHccCcccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCC--CCCeEEEEEECChHhCh
Confidence 45666666666542 356999999988833 2356788888873 34566777788889999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEG 153 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 153 (237)
+++++ |+. .++|++|+.++..++++.. +. .+..+..++..+.|
T Consensus 141 ~~i~s--r~~-~~~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 141 PTIRS--RCQ-VLPFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred HHHHh--hcE-EeeCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 99999 884 7999999999999888876 23 34557777777765
No 99
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00015 Score=68.00 Aligned_cols=118 Identities=17% Similarity=0.267 Sum_probs=88.3
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhcCC-----eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQVSP-----SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P-----~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.++++++..- .+...++.+.+.+.. .| -|++|||+|.+.. ...+.|+..|+.
T Consensus 89 d~~eid~~s~------~~v~~ir~l~~~~~~-~p~~~~~KVvIIdev~~Lt~---------------~a~naLLk~LEe- 145 (576)
T PRK14965 89 DVFEIDGASN------TGVDDIRELRENVKY-LPSRSRYKIFIIDEVHMLST---------------NAFNALLKTLEE- 145 (576)
T ss_pred CeeeeeccCc------cCHHHHHHHHHHHHh-ccccCCceEEEEEChhhCCH---------------HHHHHHHHHHHc-
Confidence 4566665431 234567777777654 34 4999999988732 246789999988
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
...++++|.+|+.++.|++.|++ |.. .++|..++..+-...+...+...+.. .+..+..++..+.|
T Consensus 146 -pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 146 -PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred -CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 34578888888999999999998 874 69999999999999999888776654 56677778887765
No 100
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.93 E-value=0.00012 Score=63.29 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=66.6
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
.+++++++++ +. .......+......... ..+.+|+|||+|.+... .....+...++.. .
T Consensus 69 ~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~~L~~~le~~--~ 129 (316)
T PHA02544 69 AEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA--------------DAQRHLRSFMEAY--S 129 (316)
T ss_pred ccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH--------------HHHHHHHHHHHhc--C
Confidence 4677777776 22 22222223322222211 25789999999887211 1123344445553 2
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHH
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l 133 (237)
+++.+|.|||.+..+++++++ ||. .+.++.|+.+++..+++.++
T Consensus 130 ~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 130 KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 456788899999999999999 996 68999999999998877543
No 101
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.92 E-value=0.00016 Score=60.95 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=67.1
Q ss_pred hccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCC-----CchhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCC
Q psy5642 104 ALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPL-----GEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPG 178 (237)
Q Consensus 104 al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~-----~~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~ 178 (237)
.+.+ |+...+++++.+.++-.+++...+...+. -.+..+..++..|.|+ ++.
T Consensus 178 ~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~-------------------- 234 (269)
T TIGR03015 178 QLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRL-------------------- 234 (269)
T ss_pred HHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccH--------------------
Confidence 3555 78888999999999999999988864331 2567788888888887 566
Q ss_pred CCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcC
Q psy5642 179 PPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 179 ~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
|..++..+...+..++ ...|+.+++..++..++
T Consensus 235 -------i~~l~~~~~~~a~~~~--~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 235 -------INILCDRLLLSAFLEE--KREIGGEEVREVIAEID 267 (269)
T ss_pred -------HHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHhh
Confidence 8888888888887766 45799999999988764
No 102
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.00022 Score=63.53 Aligned_cols=131 Identities=20% Similarity=0.317 Sum_probs=91.1
Q ss_pred CCCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 4 LGGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 4 ~~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.+.+..++++...+++..++.....+=..-|..-+ +-.+|+|||++.+.++... ..+|-..+..+
T Consensus 140 ~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-------------qeefFh~FN~l 204 (408)
T COG0593 140 NGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-------------QEEFFHTFNAL 204 (408)
T ss_pred hCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH-------------HHHHHHHHHHH
Confidence 34566788888887777666665555555565555 4569999999999776322 23344444444
Q ss_pred CCCCCEEEEEEeCCCCccc---hhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHC
Q psy5642 84 VPLNNVTIVAATNRPDRID---KALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLT 151 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld---~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t 151 (237)
...++-+|+.+-..|.+++ +.|++ ||. .++.+.+|+.+.|..||+......++. ++.-+.-+|...
T Consensus 205 ~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~ 276 (408)
T COG0593 205 LENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRL 276 (408)
T ss_pred HhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 4445556666667787665 89999 996 677999999999999999977666655 566666677665
No 103
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00033 Score=64.51 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=85.7
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.+++++++. ..+...++.+.+.+.. ..+.||+|||+|.+. ....+.|+..|+..
T Consensus 86 dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~naLLk~LEep- 143 (504)
T PRK14963 86 DVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAFNALLKTLEEP- 143 (504)
T ss_pred ceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHHHHHHHHHHhC-
Confidence 366666642 1224456666555443 246699999998652 23467788888873
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
...+++|.+|+.+..+.+.+++ |+. .+.|+.|+.++-...++..+...+.. .+..+..++..+.|
T Consensus 144 -~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 144 -PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred -CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3467788888999999999998 875 69999999999999999988776654 55667777776653
No 104
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00021 Score=67.57 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=89.3
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.+++++++. +.+...++++++.+... ...|++|||+|.+. ....+.|+..|+..
T Consensus 89 DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls---------------~~A~NALLKtLEEP- 146 (709)
T PRK08691 89 DLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS---------------KSAFNAMLKTLEEP- 146 (709)
T ss_pred ceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC---------------HHHHHHHHHHHHhC-
Confidence 455666542 12345677887766432 34699999998762 23467888888873
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
.+.+.+|.+|+.+..+.+.+++ |+ ..+.|+.++.++-...|+..+...++. .+..+..|+..+.| +.++
T Consensus 147 -p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRd 216 (709)
T PRK08691 147 -PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRD 216 (709)
T ss_pred -CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHH
Confidence 3567888888999999999998 88 458999999999999999998876654 55667788887743 4444
No 105
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00047 Score=66.78 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...+|.+.+.+.. ....|++|||+|.+. ....+.||..|+. ...++.+|++|+.+..|.
T Consensus 101 VDdIReLie~v~~~P~~gk~KViIIDEAh~LT---------------~eAqNALLKtLEE--PP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 101 VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS---------------RSSFNALLKTLEE--PPEHVKFLLATTDPQKLP 163 (944)
T ss_pred HHHHHHHHHHHHhhhhcCCcEEEEEechHhcC---------------HHHHHHHHHHHhc--cCCCeEEEEECCCchhch
Confidence 3445555555442 234599999999982 3457889999998 345677888888999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+.|++ |. ..+.|+.++.++-...|+..+...++. .+..+..|+..+.|
T Consensus 164 ~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 164 VTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred HHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99998 87 569999999999999999888664443 45567777777655
No 106
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00033 Score=64.31 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+... .+.|++|||+|.+.. ...+.|+..|+.. ...+++|.+|+.++.++
T Consensus 101 vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~LEep--p~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 101 IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKTLEEP--PPRTIFILCTTEYDKIP 163 (486)
T ss_pred HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHHHhcC--CCCeEEEEEECCHHHHH
Confidence 34455665555432 356999999997732 2356788888873 34556666677788999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+++++ |+. .+.|+.|+.++...+++..+...+.. .+..+..++..+.|
T Consensus 164 ~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 164 PTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred HHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99998 875 69999999999999999988876654 45566677776553
No 107
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00045 Score=64.50 Aligned_cols=124 Identities=17% Similarity=0.259 Sum_probs=88.7
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
..+++++++.- .+-..++.+.+.+... ...|++|||+|.+.. ...+.|+..|+.
T Consensus 88 ~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLKtLEE- 145 (605)
T PRK05896 88 VDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLKTLEE- 145 (605)
T ss_pred CceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHHHHHh-
Confidence 35666766431 1234566666666542 234999999998832 235788888888
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
....+++|.+|+.+..+.+.+++ |+. .++|+.|+..+....++..+...+.. ++..+..++..+.| +.++
T Consensus 146 -Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~ 216 (605)
T PRK05896 146 -PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRD 216 (605)
T ss_pred -CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHH
Confidence 33567788888889999999999 886 69999999999999999888766543 45667777777755 3444
No 108
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00021 Score=62.84 Aligned_cols=99 Identities=18% Similarity=0.319 Sum_probs=74.0
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcC----CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVS----PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~----P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
.+++|..+++-. .+.+.++.+|+.|+... ..|||+|||+.|... ....||..++
T Consensus 72 ~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~---------------QQD~lLp~vE 129 (436)
T COG2256 72 TNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA---------------QQDALLPHVE 129 (436)
T ss_pred hCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh---------------hhhhhhhhhc
Confidence 355666666632 35899999999996542 589999999998432 2345666666
Q ss_pred CCCCCCCEEEEEEe-CCCC-ccchhccCCCCcccEEEecCCCHHHHHHHHHHHH
Q psy5642 82 GIVPLNNVTIVAAT-NRPD-RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133 (237)
Q Consensus 82 ~~~~~~~v~vI~tt-n~~~-~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l 133 (237)
. +.|++||+| -+|. .+.++|++ |. .++++.+.+.++-..+++..+
T Consensus 130 ~----G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 130 N----GTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred C----CeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHH
Confidence 5 677777766 4455 99999999 87 468999999999999998833
No 109
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00043 Score=64.76 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=86.0
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
+...+++++++.-. +...++.+-+.+.. ...-|++|||+|.+.. ...+.||..|+
T Consensus 85 ~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALLK~LE 143 (584)
T PRK14952 85 GSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALLKIVE 143 (584)
T ss_pred CCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHHHHHh
Confidence 34667788775321 24445555555433 2335999999998832 24678899998
Q ss_pred CCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 82 GIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 82 ~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
. ....+++|.+|+.++.+.+.|++ |. ..++|..++.++-.+.+...+...+.. .+..+..++..+.
T Consensus 144 E--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~ 210 (584)
T PRK14952 144 E--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG 210 (584)
T ss_pred c--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 8 44578888888889999999999 85 579999999999999999888766543 4455555666543
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00017 Score=67.62 Aligned_cols=93 Identities=22% Similarity=0.298 Sum_probs=73.0
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
...||+|||+|.+.. ...+.|+..|+. ...++++|++|+.+..+.+.|++ |+. .|.|+.+
T Consensus 119 ~~kVIIIDEad~Lt~---------------~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pL 178 (624)
T PRK14959 119 RYKVFIIDEAHMLTR---------------EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRL 178 (624)
T ss_pred CceEEEEEChHhCCH---------------HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCC
Confidence 456999999999832 346788888887 33578888899999999999998 875 6899999
Q ss_pred CHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 121 DDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+.++-..+|+..+...... .+..+..++..+.|
T Consensus 179 s~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 179 SEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999999888766543 55667777776654
No 111
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.79 E-value=0.00012 Score=59.96 Aligned_cols=122 Identities=19% Similarity=0.283 Sum_probs=75.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC--
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-- 84 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-- 84 (237)
+.+|...++..+. ....+..++...+ ...|||||||+.+.. .+-..|+..|++..
T Consensus 75 ~~~~~~~sg~~i~------k~~dl~~il~~l~--~~~ILFIDEIHRlnk---------------~~qe~LlpamEd~~id 131 (233)
T PF05496_consen 75 GVNFKITSGPAIE------KAGDLAAILTNLK--EGDILFIDEIHRLNK---------------AQQEILLPAMEDGKID 131 (233)
T ss_dssp T--EEEEECCC--------SCHHHHHHHHT----TT-EEEECTCCC--H---------------HHHHHHHHHHHCSEEE
T ss_pred CCCeEeccchhhh------hHHHHHHHHHhcC--CCcEEEEechhhccH---------------HHHHHHHHHhccCeEE
Confidence 3455556654321 1334444444433 467999999999832 23445566665432
Q ss_pred ------C--------CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHH
Q psy5642 85 ------P--------LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVR 149 (237)
Q Consensus 85 ------~--------~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~ 149 (237)
. -.+..+||+|+....+.+.++. ||..+..+..-+.++-..|++.....+.+. .+....++|.
T Consensus 132 iiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 132 IIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIAR 209 (233)
T ss_dssp EEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHH
T ss_pred EEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 1 1358899999999999999999 999988999999999999999877766665 5667778888
Q ss_pred HCCC
Q psy5642 150 LTEG 153 (237)
Q Consensus 150 ~t~g 153 (237)
++.|
T Consensus 210 rsrG 213 (233)
T PF05496_consen 210 RSRG 213 (233)
T ss_dssp CTTT
T ss_pred hcCC
Confidence 8865
No 112
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00091 Score=60.88 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=72.4
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecC
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPL 119 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~ 119 (237)
....|++|||+|.+.. ...+.|+..|+.. .+.+++|++|+.+..+.+.|++ |+. .++|+.
T Consensus 120 ~~~kvvIIdead~lt~---------------~~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~ 179 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK---------------EAFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKR 179 (451)
T ss_pred CCCEEEEEecHHhhCH---------------HHHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCC
Confidence 3567999999988832 2357888888883 3577777888889999999999 885 699999
Q ss_pred CCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 120 PDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 120 P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
++.++-...++..+...+.. ....+..|+..+.
T Consensus 180 l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~ 213 (451)
T PRK06305 180 IPEETIIDKLALIAKQEGIETSREALLPIARAAQ 213 (451)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99999999999887765543 4556777777664
No 113
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.77 E-value=0.00097 Score=62.99 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=43.5
Q ss_pred EEEEE-EeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHH
Q psy5642 89 VTIVA-ATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRL 150 (237)
Q Consensus 89 v~vI~-ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~ 150 (237)
+++|+ ||+.++.+++++++ ||. .+++++++.++...|++..+...... ++..+..|+..
T Consensus 324 ~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~y 384 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARY 384 (615)
T ss_pred EEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHC
Confidence 45554 56779999999999 997 57899999999999999988765432 33444444443
No 114
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00084 Score=62.69 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-..++.+.+.+.. ...-|++|||+|.+. ....+.|+..++. ....+++|++|+.+..+.
T Consensus 101 vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls---------------~~a~naLLK~LEe--pp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 101 VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS---------------NSAFNALLKTIEE--PPPYIVFIFATTEVHKLP 163 (563)
T ss_pred HHHHHHHHHHHHhchhcCCCEEEEEEChhhcC---------------HHHHHHHHHhhcc--CCCCEEEEEecCChHHhH
Confidence 4455566554443 245599999998872 2346788888887 345778888888899999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
++|++ |+. .++|..|+.++...+++..+...+.. .+..+..|+..+.| +.++
T Consensus 164 ~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~ 216 (563)
T PRK06647 164 ATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRD 216 (563)
T ss_pred HHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 99999 986 58999999999999999887665543 56677778887765 4555
No 115
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00052 Score=64.43 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=89.3
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.++++++..- .+...++.+.+.+... ...|++|||+|.+.. ...+.|+..|++.
T Consensus 102 Dv~e~~a~s~------~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~naLLKtLEeP- 159 (598)
T PRK09111 102 DVLEMDAASH------TGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAFNALLKTLEEP- 159 (598)
T ss_pred ceEEeccccc------CCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHHHHHHHHHHhC-
Confidence 4566665421 1245677787777643 346999999988832 3467888888883
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
...+.+|.+|+.++.+.+.|++ |.. .++|..|+.++-..+++..+.+.+.. .+..+..++..+.| +.++
T Consensus 160 -p~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 160 -PPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred -CCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 3467777778888889999998 874 69999999999999999988776654 45667777887765 4555
No 116
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.74 E-value=0.00039 Score=57.24 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=57.3
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC-CC--ccchhccCCCCc--ccEE
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR-PD--RIDKALLRPGRL--DRLI 115 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~-~~--~ld~al~r~gRf--~~~i 115 (237)
.+.+|+|||+|.+... ... .+...++.....+..++|.|++. |. .+.+.+++ || ...+
T Consensus 90 ~~~~liiDdi~~l~~~------------~~~---~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i 152 (227)
T PRK08903 90 EAELYAVDDVERLDDA------------QQI---ALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVY 152 (227)
T ss_pred cCCEEEEeChhhcCch------------HHH---HHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEE
Confidence 4679999999986221 122 23333433323344334445443 22 34577777 87 4789
Q ss_pred EecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHH
Q psy5642 116 YVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVR 149 (237)
Q Consensus 116 ~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~ 149 (237)
.+++|+..++..+++.+.....+. ++..+..|+.
T Consensus 153 ~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~ 187 (227)
T PRK08903 153 ELKPLSDADKIAALKAAAAERGLQLADEVPDYLLT 187 (227)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999877665554 4555666666
No 117
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.73 E-value=0.00047 Score=66.06 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=76.7
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHh-----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQ-----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~-----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
+.+|+.++++.- +.+.++..+..+.. ..+.+|||||+|.+... ....|+..++
T Consensus 77 ~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~---------------qQdaLL~~lE 134 (725)
T PRK13341 77 RAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA---------------QQDALLPWVE 134 (725)
T ss_pred cCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH---------------HHHHHHHHhc
Confidence 345666666421 12334455554421 24679999999988321 1234555554
Q ss_pred CCCCCCCEEEEEEeC-CC-CccchhccCCCCcccEEEecCCCHHHHHHHHHHHHc-------CCCCC-chhhHHHHHHHC
Q psy5642 82 GIVPLNNVTIVAATN-RP-DRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA-------RSPLG-EDVCVEELVRLT 151 (237)
Q Consensus 82 ~~~~~~~v~vI~ttn-~~-~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~-------~~~~~-~~~~~~~la~~t 151 (237)
+ +.+++|++|+ .+ ..+++++++ |. ..+.|++++.+++..+++..+. ...+. ++..+..|+..+
T Consensus 135 ~----g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s 207 (725)
T PRK13341 135 N----GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA 207 (725)
T ss_pred C----ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC
Confidence 3 5677776653 33 478999998 75 4699999999999999998886 22222 455566677654
Q ss_pred CCCCcccccch
Q psy5642 152 EGYSGAEQSLS 162 (237)
Q Consensus 152 ~g~s~~Dl~~~ 162 (237)
++|+..+
T Consensus 208 ----~GD~R~l 214 (725)
T PRK13341 208 ----NGDARSL 214 (725)
T ss_pred ----CCCHHHH
Confidence 5564443
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00061 Score=60.28 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+++.+... .+.||+|||+|.+.. ...+.++..+++. ....++|.+|+.+..+.
T Consensus 90 ~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~--~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 90 VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEP--PAHAIFILATTEKHKII 152 (367)
T ss_pred HHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCC--CCceEEEEEeCCcccCC
Confidence 46777888876542 346999999987732 2356777777762 34566677778889999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
+++++ |+. .++++.|+.++...++...+...+.. ++..+..++..+.
T Consensus 153 ~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~ 200 (367)
T PRK14970 153 PTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD 200 (367)
T ss_pred HHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 99998 774 68999999999999999888766653 5667777777654
No 119
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00056 Score=60.55 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=61.6
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC---ccchhccCCCCcc-cEE
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD---RIDKALLRPGRLD-RLI 115 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~---~ld~al~r~gRf~-~~i 115 (237)
..+.||++||+|.|..... .++-.|+..-+.. ..++.+|+.+|..+ .+|+.+.+ +|. ..|
T Consensus 122 ~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I 185 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEI 185 (366)
T ss_pred CCeEEEEEcchhhhccccc------------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCccee
Confidence 3567999999999977642 3455555555554 45799999999864 78999998 763 558
Q ss_pred EecCCCHHHHHHHHHHHHcC
Q psy5642 116 YVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 116 ~~~~P~~~~R~~il~~~l~~ 135 (237)
.|++-+.+|-.+|++.....
T Consensus 186 ~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 186 VFPPYTAEELYDILRERVEE 205 (366)
T ss_pred eeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987753
No 120
>PRK09087 hypothetical protein; Validated
Probab=97.70 E-value=0.00034 Score=57.79 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=64.3
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc---chhccCCCCcc--cEEEe
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI---DKALLRPGRLD--RLIYV 117 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l---d~al~r~gRf~--~~i~~ 117 (237)
.+|+|||++.+..+ +. .|...++.....++.+||+++..|..+ .+.+++ ||. ..+++
T Consensus 89 ~~l~iDDi~~~~~~-------------~~---~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l 150 (226)
T PRK09087 89 GPVLIEDIDAGGFD-------------ET---GLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEI 150 (226)
T ss_pred CeEEEECCCCCCCC-------------HH---HHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeec
Confidence 47999999976211 11 233333333333556677776666533 678999 995 78999
Q ss_pred cCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 118 PLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 118 ~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
..|+.+.|.++++..+...... ++..+..|+.+..
T Consensus 151 ~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 151 GEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME 186 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 9999999999999999776554 6677777887775
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.0016 Score=62.09 Aligned_cols=107 Identities=16% Similarity=0.310 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+... ...|++|||+|.+.. ...+.|+..|+. ....+++|.+|+.++.|+
T Consensus 100 vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLEE--PP~~tifILaTte~~KLl 162 (725)
T PRK07133 100 VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLEE--PPKHVIFILATTEVHKIP 162 (725)
T ss_pred HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhhc--CCCceEEEEEcCChhhhh
Confidence 55577887777653 345999999998732 246788999988 345778888888999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+.|++ |+. .+.|..|+.++....|+..+...+.. .+..+..+|..+.|
T Consensus 163 ~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G 211 (725)
T PRK07133 163 LTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG 211 (725)
T ss_pred HHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999 985 79999999999999999887766554 34456677776653
No 122
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00066 Score=65.39 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=85.8
Q ss_pred eEEEEEecccccc-----c-------ccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHH
Q psy5642 8 TEVVESIGPELFR-----K-------YVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQ 75 (237)
Q Consensus 8 ~~~i~v~~s~l~~-----~-------~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ 75 (237)
.+|+.++++++.. + |+|... -..+.+..+....+||||||+|.+.+ .+.+.
T Consensus 514 ~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~--~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~ 576 (758)
T PRK11034 514 IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNL 576 (758)
T ss_pred CCcEEeechhhcccccHHHHcCCCCCcccccc--cchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHH
Confidence 5788888876533 1 222110 11222333455568999999999832 36777
Q ss_pred HHHHhcCCC---------CCCCEEEEEEeCCC-------------------------CccchhccCCCCcccEEEecCCC
Q psy5642 76 MLTEMDGIV---------PLNNVTIVAATNRP-------------------------DRIDKALLRPGRLDRLIYVPLPD 121 (237)
Q Consensus 76 ll~~l~~~~---------~~~~v~vI~ttn~~-------------------------~~ld~al~r~gRf~~~i~~~~P~ 121 (237)
|++.|++-. .-.++++|+|||.- ..+.|.++. |+|.+|.|++.+
T Consensus 577 LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~ 654 (758)
T PRK11034 577 LLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLS 654 (758)
T ss_pred HHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCC
Confidence 888776321 11368899999932 125678888 999999999999
Q ss_pred HHHHHHHHHHHHcC-------CCCC---chhhHHHHHHHC--CCCCcccccchhH
Q psy5642 122 DLTRAAILKIRLAR-------SPLG---EDVCVEELVRLT--EGYSGAEQSLSKH 164 (237)
Q Consensus 122 ~~~R~~il~~~l~~-------~~~~---~~~~~~~la~~t--~g~s~~Dl~~~~~ 164 (237)
.++..+|+..++.. .++. .+..+..|+... ..|..+.|..+++
T Consensus 655 ~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 655 TDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 99999999876642 1222 455556666543 2344555333333
No 123
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.67 E-value=0.00065 Score=57.37 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=54.9
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC--------------CCCCEEEEEEeCCCC-----cc
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV--------------PLNNVTIVAATNRPD-----RI 101 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------------~~~~v~vI~ttn~~~-----~l 101 (237)
.+.+|+|||++.+-+ .+.+.|+..|++-. ...+..||+|+|... .+
T Consensus 105 ~g~~lllDEi~r~~~---------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 105 EGFTLVYDEFTRSKP---------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred cCCEEEEcchhhCCH---------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 457999999998622 23455555554311 112567999999753 67
Q ss_pred chhccCCCCcccEEEecCCCHHHHHHHHHHHH
Q psy5642 102 DKALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133 (237)
Q Consensus 102 d~al~r~gRf~~~i~~~~P~~~~R~~il~~~l 133 (237)
++++++ || ..+++++|+.++-.+|++...
T Consensus 170 ~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 170 QDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 999999 99 579999999999999998875
No 124
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0005 Score=63.78 Aligned_cols=119 Identities=18% Similarity=0.286 Sum_probs=86.3
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.+++++++. ..+...++.+.+.+... ...|++|||+|.+.. ...+.|+..|++
T Consensus 89 d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~LEe-- 145 (527)
T PRK14969 89 DLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKTLEE-- 145 (527)
T ss_pred ceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHHHhC--
Confidence 456666542 12355677777776542 235999999988732 346789999988
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
..+.+.+|.+|++++.+.+.+++ |. ..++|+.|+.++-...+...+...+.. .+..+..++..+.|
T Consensus 146 pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 146 PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 34577788888889999999998 87 579999999999999999888665544 45566777776643
No 125
>PRK05642 DNA replication initiation factor; Validated
Probab=97.67 E-value=0.00077 Score=55.98 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=63.4
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc---chhccCCCCcc--cEEEe
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI---DKALLRPGRLD--RLIYV 117 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l---d~al~r~gRf~--~~i~~ 117 (237)
.+|+|||++.+.... .....|.+.++.....++.++|+++..|..+ .+.+++ ||. ..+.+
T Consensus 99 d~LiiDDi~~~~~~~-------------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l 163 (234)
T PRK05642 99 ELVCLDDLDVIAGKA-------------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQM 163 (234)
T ss_pred CEEEEechhhhcCCh-------------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeec
Confidence 589999999874432 1123344444444444567788777777644 688999 994 67788
Q ss_pred cCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 118 PLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 118 ~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
..|+.++|..+++......++. ++..+..|+...+
T Consensus 164 ~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~ 199 (234)
T PRK05642 164 RGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGT 199 (234)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Confidence 9999999999999655444333 5555666666553
No 126
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.65 E-value=0.00082 Score=61.65 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcC---CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchh
Q psy5642 28 RCVRDVFKRARQVS---PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKA 104 (237)
Q Consensus 28 ~~l~~~f~~a~~~~---P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~a 104 (237)
+.-..+++...... |+|++|.|++.++.+ ....+.+..+...+.. .++.+|+.+. ...+|+.
T Consensus 65 ~~p~~al~~i~~~~~~~~~~~vl~d~h~~~~~----------~~~~r~l~~l~~~~~~---~~~~~i~~~~--~~~~p~e 129 (489)
T CHL00195 65 RNPLQALEFIEKLTPETPALFLLKDFNRFLND----------ISISRKLRNLSRILKT---QPKTIIIIAS--ELNIPKE 129 (489)
T ss_pred ccHHHHHHHHHhcCCCCCcEEEEecchhhhcc----------hHHHHHHHHHHHHHHh---CCCEEEEEcC--CCCCCHH
Confidence 34445555555443 789999999999832 1123444444444444 2344444443 3678888
Q ss_pred ccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 105 LLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 105 l~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
|.+ +-.++++|+|+.++...+++.+....+.. .+.++..++..+.|+|..+++.+...+
T Consensus 130 l~~---~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~ 189 (489)
T CHL00195 130 LKD---LITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKI 189 (489)
T ss_pred HHh---ceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 886 33578999999999999998887654433 678889999999999999955555443
No 127
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.64 E-value=0.00042 Score=57.60 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=62.6
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCC-EEEEEEeCCCCc---cchhccCCCCcc--cEEE
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNN-VTIVAATNRPDR---IDKALLRPGRLD--RLIY 116 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~vI~ttn~~~~---ld~al~r~gRf~--~~i~ 116 (237)
.+|+|||++.+..+. .. ...+-.+++.+. ..++ -+++.+++.|.. +.+.+++ |+. .++.
T Consensus 99 dlliiDdi~~~~~~~---------~~-~~~lf~l~n~~~---e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~ 163 (235)
T PRK08084 99 SLVCIDNIECIAGDE---------LW-EMAIFDLYNRIL---ESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYK 163 (235)
T ss_pred CEEEEeChhhhcCCH---------HH-HHHHHHHHHHHH---HcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceee
Confidence 589999999885431 11 222333333322 2244 344445555555 5799999 996 8899
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 117 VPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 117 ~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
+..|+.++|.++++......++. ++.-+..|+.+.+
T Consensus 164 l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~ 200 (235)
T PRK08084 164 LQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLD 200 (235)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Confidence 99999999999999866554444 5666677777664
No 128
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.64 E-value=0.0016 Score=56.97 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=91.0
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCCC-ccchhccCCCC
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRPD-RIDKALLRPGR 110 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~-~ld~al~r~gR 110 (237)
.+||+||++.+- ..+.+.++..|+.-. ...++++|+|+|-.+ .+++++.. |
T Consensus 130 GiL~lDEInrl~---------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--R 192 (334)
T PRK13407 130 GYLYIDEVNLLE---------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--R 192 (334)
T ss_pred CeEEecChHhCC---------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--h
Confidence 599999999872 245666677665321 123689999988644 68999999 9
Q ss_pred cccEEEecCCCH-HHHHHHHHHHHcCCC--C--------C---chhhHHHHHHHCCCCCccc--ccchhHHhhhhccccC
Q psy5642 111 LDRLIYVPLPDD-LTRAAILKIRLARSP--L--------G---EDVCVEELVRLTEGYSGAE--QSLSKHRAKKIRPRRE 174 (237)
Q Consensus 111 f~~~i~~~~P~~-~~R~~il~~~l~~~~--~--------~---~~~~~~~la~~t~g~s~~D--l~~~~~~a~~~~~~~~ 174 (237)
|...+.+++|.. ++|.++++....... . . ...++...-.....-.-.| +..+++-+......
T Consensus 193 F~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~-- 270 (334)
T PRK13407 193 FGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSD-- 270 (334)
T ss_pred cceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCC--
Confidence 999999999966 899999987543211 0 0 1122222223333333222 44444444433321
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 175 SNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 175 ~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
.+.+-..+++.|...++.++ ...|+.+|+..+..
T Consensus 271 -------s~Ra~i~l~~aA~a~A~l~G--r~~V~~~Di~~~~~ 304 (334)
T PRK13407 271 -------GLRGELTLLRAARALAAFEG--AEAVGRSHLRSVAT 304 (334)
T ss_pred -------CchHHHHHHHHHHHHHHHcC--CCeeCHHHHHHHHH
Confidence 12223346777777777777 44699999977653
No 129
>PLN03025 replication factor C subunit; Provisional
Probab=97.63 E-value=0.00053 Score=59.58 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=68.4
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
.+.|++|||+|.+... ..+.|+..++... ....+|.+||.++.+.++|++ |. ..+.|+.|
T Consensus 99 ~~kviiiDE~d~lt~~---------------aq~aL~~~lE~~~--~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSG---------------AQQALRRTMEIYS--NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHH---------------HHHHHHHHHhccc--CCceEEEEeCCccccchhHHH--hh-hcccCCCC
Confidence 3579999999998432 1344556665532 234567788888999999998 87 47999999
Q ss_pred CHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 121 DDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
+.++....++..+...+.. .+..+..++..+.
T Consensus 159 ~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~ 191 (319)
T PLN03025 159 SDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD 191 (319)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 9999999999988766554 5666777777664
No 130
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.63 E-value=0.00059 Score=58.76 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=67.0
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPD 121 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~ 121 (237)
+.+|+|||+|.+... ....|+..++... .+..+|.++|.+..+.+.+.+ |+. .++++.|+
T Consensus 103 ~~vviiDe~~~l~~~---------------~~~~L~~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~ 162 (319)
T PRK00440 103 FKIIFLDEADNLTSD---------------AQQALRRTMEMYS--QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLK 162 (319)
T ss_pred ceEEEEeCcccCCHH---------------HHHHHHHHHhcCC--CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCC
Confidence 569999999888321 1345666666543 234566677888888888988 876 59999999
Q ss_pred HHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 122 DLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 122 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
.++...+++.++...+.. .+..+..++..+.
T Consensus 163 ~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~ 194 (319)
T PRK00440 163 KEAVAERLRYIAENEGIEITDDALEAIYYVSE 194 (319)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 999999999988776654 5667777877654
No 131
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0015 Score=60.70 Aligned_cols=105 Identities=17% Similarity=0.251 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 28 RCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 28 ~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
..++.+.+.+.. ...-|++|||+|.+.. ...+.|+..|++ ..+.+.+|++|+.+..+.+
T Consensus 102 d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~ 164 (546)
T PRK14957 102 EETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNALLKTLEE--PPEYVKFILATTDYHKIPV 164 (546)
T ss_pred HHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHHHHHHhc--CCCCceEEEEECChhhhhh
Confidence 345566655543 2345999999988732 346788999987 3356777777788999999
Q ss_pred hccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 104 ALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 104 al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
.|++ |. ..++|..++.++-...++..+...+.. .+..+..++..+.
T Consensus 165 tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 165 TILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK 211 (546)
T ss_pred hHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 9998 87 579999999999999999888766544 5566677777664
No 132
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.00064 Score=59.32 Aligned_cols=104 Identities=17% Similarity=0.309 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...+|.+.+.+.. ...-|++||++|.+.. ...+.||..|++ +..++++|.+|++++.+.
T Consensus 88 id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll 150 (328)
T PRK05707 88 VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLL 150 (328)
T ss_pred HHHHHHHHHHHhhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCc
Confidence 4556666555544 2355899999999833 357899999999 446888999999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEG 153 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 153 (237)
|.|++ |... +.|+.|+.++-.+.|...... ..+.....++..+.|
T Consensus 151 ~TI~S--Rc~~-~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 151 PTIKS--RCQQ-QACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred HHHHh--hcee-eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 99999 9865 999999999888888765421 123344455555555
No 133
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.57 E-value=0.0015 Score=63.11 Aligned_cols=132 Identities=18% Similarity=0.201 Sum_probs=84.8
Q ss_pred eEEEEEeccccccc------------ccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHH
Q psy5642 8 TEVVESIGPELFRK------------YVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQ 75 (237)
Q Consensus 8 ~~~i~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ 75 (237)
.+++.++++++..+ |+|..+ -..+.+..+....+||+|||+|.+.+ .+.+.
T Consensus 510 ~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~---------------~~~~~ 572 (731)
T TIGR02639 510 VHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP---------------DIYNI 572 (731)
T ss_pred CCeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCH---------------HHHHH
Confidence 46777777765432 333211 12233444556678999999997732 35677
Q ss_pred HHHHhcCCC---------CCCCEEEEEEeCCCC-------------------------ccchhccCCCCcccEEEecCCC
Q psy5642 76 MLTEMDGIV---------PLNNVTIVAATNRPD-------------------------RIDKALLRPGRLDRLIYVPLPD 121 (237)
Q Consensus 76 ll~~l~~~~---------~~~~v~vI~ttn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~ 121 (237)
|++.|++-. .-.+.++|+|||... .+.|.++. |||.+|.|.+.+
T Consensus 573 Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs 650 (731)
T TIGR02639 573 LLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLS 650 (731)
T ss_pred HHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCC
Confidence 788776521 123588999998642 24677877 999999999999
Q ss_pred HHHHHHHHHHHHcCC-------C--CC-chhhHHHHHHHC--CCCCccc
Q psy5642 122 DLTRAAILKIRLARS-------P--LG-EDVCVEELVRLT--EGYSGAE 158 (237)
Q Consensus 122 ~~~R~~il~~~l~~~-------~--~~-~~~~~~~la~~t--~g~s~~D 158 (237)
.++..+|++..+... . +. .+..++.|+... ..|..+.
T Consensus 651 ~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~ 699 (731)
T TIGR02639 651 EEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARP 699 (731)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchH
Confidence 999999999877531 1 11 455566677642 3444555
No 134
>KOG1514|consensus
Probab=97.57 E-value=0.00091 Score=62.61 Aligned_cols=149 Identities=21% Similarity=0.230 Sum_probs=93.9
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccC---CCCcc-cEEE
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLR---PGRLD-RLIY 116 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r---~gRf~-~~i~ 116 (237)
.|+||+|||+|.|+... +.++-.|.+|... ++.+++||+.+|..+ +|+.++- ..|.+ ..|.
T Consensus 508 ~~~VvLiDElD~Lvtr~------------QdVlYn~fdWpt~--~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~ 572 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRS------------QDVLYNIFDWPTL--KNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRIC 572 (767)
T ss_pred CCEEEEeccHHHHhccc------------HHHHHHHhcCCcC--CCCceEEEEeccccc-CHHHHhccchhhhccceeee
Confidence 58899999999998753 5677788887766 456788888888744 4444432 11443 4578
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHH
Q psy5642 117 VPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALS 196 (237)
Q Consensus 117 ~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~ 196 (237)
|.+-+.+|-.+|+...|.....-....++-+|.+. +-..+|.+. --.+|+.|...
T Consensus 573 F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkV-AavSGDaRr------------------------aldic~RA~Ei 627 (767)
T KOG1514|consen 573 FQPYTHEQLQEIISARLKGLDAFENKAIELVARKV-AAVSGDARR------------------------ALDICRRAAEI 627 (767)
T ss_pred cCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHH-HhccccHHH------------------------HHHHHHHHHHH
Confidence 88889999999999999876433333443344444 444455222 22445555554
Q ss_pred HHHhcc-----ccCCccHHHHHHHHhhcCCCCCHHHHH
Q psy5642 197 ALENNL-----EAAYVSHQDFLTALQLVKPRTPPQLIK 229 (237)
Q Consensus 197 ~~~~~~-----~~~~v~~~df~~al~~~~p~~~~~~~~ 229 (237)
+-.+.. ....|+.-++.+|+..+..+..-..+.
T Consensus 628 a~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~ 665 (767)
T KOG1514|consen 628 AEERNVKGKLAVSQLVGILHVMEAINEMLASPYIKALK 665 (767)
T ss_pred hhhhcccccccccceeehHHHHHHHHHHhhhhHHHHhc
Confidence 444332 124567778888877776655444443
No 135
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.00062 Score=59.93 Aligned_cols=93 Identities=13% Similarity=0.137 Sum_probs=68.1
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
..-|++|||+|.+.. ...+.||..|++. ..+.++|..|+.++.+.+.+++ |+ ..+.|++|
T Consensus 141 ~~rVviIDeAd~l~~---------------~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl 200 (351)
T PRK09112 141 NWRIVIIDPADDMNR---------------NAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPL 200 (351)
T ss_pred CceEEEEEchhhcCH---------------HHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCC
Confidence 456999999999832 2367788888873 3456667777889999999999 88 58999999
Q ss_pred CHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCC
Q psy5642 121 DDLTRAAILKIRLARSPLGEDVCVEELVRLTEGY 154 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 154 (237)
+.++-..+|......... .+..+..++..+.|-
T Consensus 201 ~~~~~~~~L~~~~~~~~~-~~~~~~~i~~~s~G~ 233 (351)
T PRK09112 201 DDDELKKALSHLGSSQGS-DGEITEALLQRSKGS 233 (351)
T ss_pred CHHHHHHHHHHhhcccCC-CHHHHHHHHHHcCCC
Confidence 999999999874332221 234456666666543
No 136
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.53 E-value=0.0014 Score=58.64 Aligned_cols=84 Identities=21% Similarity=0.325 Sum_probs=61.9
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC--------CCCCEEEEEEeC----CCCccchhccCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV--------PLNNVTIVAATN----RPDRIDKALLRP 108 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vI~ttn----~~~~ld~al~r~ 108 (237)
+..||||||+|.++......+. +....-+...||..+++.. ..++|++|++-. .|++|=|.|..
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~---DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGA---DVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCC---CCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 4589999999999976532211 1112346777888887632 345788998865 46677777776
Q ss_pred CCcccEEEecCCCHHHHHHHH
Q psy5642 109 GRLDRLIYVPLPDDLTRAAIL 129 (237)
Q Consensus 109 gRf~~~i~~~~P~~~~R~~il 129 (237)
||.-++.+..++.++-..||
T Consensus 323 -R~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 323 -RFPIRVELQALTTDDFERIL 342 (441)
T ss_pred -ccceEEECCCCCHHHHHHHh
Confidence 99999999999999998888
No 137
>KOG0741|consensus
Probab=97.53 E-value=0.00053 Score=62.39 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=87.3
Q ss_pred CCceEEEEE-ecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 5 GGLTEVVES-IGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 5 ~~~~~~i~v-~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.+..||+.+ ++.++.+......-..++++|+-|++..-+||++|+++.|.---. -...+++.++..|+..+...
T Consensus 561 ~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp-----IGPRfSN~vlQaL~VllK~~ 635 (744)
T KOG0741|consen 561 SSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP-----IGPRFSNLVLQALLVLLKKQ 635 (744)
T ss_pred hcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc-----cCchhhHHHHHHHHHHhccC
Confidence 356788875 556676666667778899999999999899999999999863211 12356678899999999988
Q ss_pred CCCC-CEEEEEEeCCCCccch-hccCCCCcccEEEecCCCH-HHHHHHHH
Q psy5642 84 VPLN-NVTIVAATNRPDRIDK-ALLRPGRLDRLIYVPLPDD-LTRAAILK 130 (237)
Q Consensus 84 ~~~~-~v~vI~ttn~~~~ld~-al~r~gRf~~~i~~~~P~~-~~R~~il~ 130 (237)
.+.+ +.+|++||+..+-|.+ .+.. +|+..+++|..+. ++-.+++.
T Consensus 636 ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 636 PPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred CCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 7765 5888888887665533 3455 8999999998755 55555554
No 138
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.004 Score=58.88 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 25 ESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 25 ~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
.+...++.+.+.+... ..-|++|||+|.+.. ...+.|+..|++ ....+++|++|++++.
T Consensus 101 ~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naLLK~LEe--Pp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 101 TGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNALLKTLEE--PPPRVVFVLATTDPQR 163 (620)
T ss_pred CCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHHHHHHhc--CCcCeEEEEEeCChhh
Confidence 4467888888877642 235999999998822 346788999987 3456788888888999
Q ss_pred cchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 101 IDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 101 ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+-+.|++ |.. .++|+.++.++-...+.....+.+.. ....+..++..+.|
T Consensus 164 llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 164 VLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred hhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 9999998 874 58999999988888888777665443 34557777777654
No 139
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.51 E-value=0.00035 Score=52.13 Aligned_cols=95 Identities=32% Similarity=0.442 Sum_probs=62.3
Q ss_pred ceEEEEEecccccccccChHHHH---HHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERC---VRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~---l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
+.+++.++++............. ....+..+....+.+|++||++.+.. .....++..+...
T Consensus 47 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~---------------~~~~~~~~~i~~~ 111 (151)
T cd00009 47 GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR---------------GAQNALLRVLETL 111 (151)
T ss_pred CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH---------------HHHHHHHHHHHhc
Confidence 46788888877665544433332 12333444455789999999998711 1234455555444
Q ss_pred CC----CCCEEEEEEeCCCC--ccchhccCCCCcccEEEec
Q psy5642 84 VP----LNNVTIVAATNRPD--RIDKALLRPGRLDRLIYVP 118 (237)
Q Consensus 84 ~~----~~~v~vI~ttn~~~--~ld~al~r~gRf~~~i~~~ 118 (237)
.. ..++.+|++++... .+++.+.. ||+.+++++
T Consensus 112 ~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 112 NDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred CceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 32 35788899998877 78888888 998888776
No 140
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.50 E-value=0.0015 Score=58.46 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=62.6
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC--------CCCCCEEEEEEeC----CCCccchhccCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI--------VPLNNVTIVAATN----RPDRIDKALLRP 108 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~v~vI~ttn----~~~~ld~al~r~ 108 (237)
+-.||||||||.++...++.+ .+....-+...||..+++. ...++|++|++-. .|++|=|.|..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~---~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSG---PDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCCC---CCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 458999999999997654321 1112244677788888773 2345788888764 46777788887
Q ss_pred CCcccEEEecCCCHHHHHHHH
Q psy5642 109 GRLDRLIYVPLPDDLTRAAIL 129 (237)
Q Consensus 109 gRf~~~i~~~~P~~~~R~~il 129 (237)
||.-++.+..++.++-..||
T Consensus 325 -R~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 325 -RFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred -ccceEEECCCCCHHHHHHHh
Confidence 99999999999999998888
No 141
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.50 E-value=0.0029 Score=55.44 Aligned_cols=148 Identities=13% Similarity=0.103 Sum_probs=87.7
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCCC-ccchhccCCC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRPD-RIDKALLRPG 109 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~-~ld~al~r~g 109 (237)
..+|||||++.+- ..+.+.|+..|+.-. ...++++|+|.|-.+ .+++++..
T Consensus 132 ~GvL~lDEi~~L~---------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld-- 194 (337)
T TIGR02030 132 RGILYIDEVNLLE---------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD-- 194 (337)
T ss_pred CCEEEecChHhCC---------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--
Confidence 4799999999872 234556666664311 123588888888544 69999999
Q ss_pred CcccEEEecCCCH-HHHHHHHHHHHcCC--CCC--------c---hhhHHHHHHHCCCCCccc--ccchhHHhhhhcccc
Q psy5642 110 RLDRLIYVPLPDD-LTRAAILKIRLARS--PLG--------E---DVCVEELVRLTEGYSGAE--QSLSKHRAKKIRPRR 173 (237)
Q Consensus 110 Rf~~~i~~~~P~~-~~R~~il~~~l~~~--~~~--------~---~~~~~~la~~t~g~s~~D--l~~~~~~a~~~~~~~ 173 (237)
||...+.+++|.. ++|.+|++...... +.. . ...+...-+....-.-.| +..+++-+......
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~- 273 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVD- 273 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCC-
Confidence 9999999999976 89999998754321 000 0 011111111112211111 33344434332211
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 174 ESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 174 ~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
++.+-..+++-|...+..++ ...|+.+|+..+..
T Consensus 274 --------s~Ra~i~l~raArA~Aal~G--R~~V~~dDv~~~a~ 307 (337)
T TIGR02030 274 --------GLRGELTLNRAAKALAAFEG--RTEVTVDDIRRVAV 307 (337)
T ss_pred --------CCcHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHH
Confidence 12235566666777777666 45699999998865
No 142
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.45 E-value=0.0029 Score=58.54 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=94.7
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCCC-----------
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRPD----------- 99 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~----------- 99 (237)
..+++|||+|.+-. .....|+..|++-. -..+..||||+|-..
T Consensus 301 ~Gil~iDEi~~l~~---------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~ 365 (509)
T smart00350 301 NGVCCIDEFDKMDD---------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEE 365 (509)
T ss_pred CCEEEEechhhCCH---------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhh
Confidence 46899999988732 23444555554321 123688999999643
Q ss_pred --ccchhccCCCCcccEEEe-cCCCHHHHHHHHHHHHcCCCC------------CchhhHHH---HHHH-C-CCCCcccc
Q psy5642 100 --RIDKALLRPGRLDRLIYV-PLPDDLTRAAILKIRLARSPL------------GEDVCVEE---LVRL-T-EGYSGAEQ 159 (237)
Q Consensus 100 --~ld~al~r~gRf~~~i~~-~~P~~~~R~~il~~~l~~~~~------------~~~~~~~~---la~~-t-~g~s~~Dl 159 (237)
.+++++++ |||..+.+ +.|+.+...+|.++.+..+.. -+...+.. .|+. . .-++..-.
T Consensus 366 n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~ 443 (509)
T smart00350 366 NIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAA 443 (509)
T ss_pred ccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 69999999 99986555 689999999999986643210 01112222 2332 1 22333334
Q ss_pred cchhHHhhhhccccCCC---CCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcC
Q psy5642 160 SLSKHRAKKIRPRRESN---PGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 160 ~~~~~~a~~~~~~~~~~---~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
..+++.+...+...... .....+...+..+++-|-..|..+. ...|+.+|+..|++-+.
T Consensus 444 ~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~--r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 444 EKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRL--SDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcC--CCccCHHHHHHHHHHHH
Confidence 44555554444322111 1233444556666666666665554 34699999999987654
No 143
>KOG2028|consensus
Probab=97.42 E-value=0.0039 Score=54.63 Aligned_cols=97 Identities=24% Similarity=0.416 Sum_probs=69.2
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhc-----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQV-----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.|++++..+ .+.+-+|++|+.++.. ..+|||||||+.+.... ...||-.++.
T Consensus 192 rfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ---------------QD~fLP~VE~- 248 (554)
T KOG2028|consen 192 RFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ---------------QDTFLPHVEN- 248 (554)
T ss_pred EEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh---------------hhcccceecc-
Confidence 366666643 2478899999999863 57899999999984321 2234444433
Q ss_pred CCCCCEEEEEEe-CCCC-ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHc
Q psy5642 84 VPLNNVTIVAAT-NRPD-RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134 (237)
Q Consensus 84 ~~~~~v~vI~tt-n~~~-~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~ 134 (237)
+.|++||+| -+|+ .+..+|++ |. .++.+.......-..||..-+.
T Consensus 249 ---G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 249 ---GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred ---CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHH
Confidence 678888776 3454 88999998 76 4688888888888899887443
No 144
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0015 Score=57.79 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=73.7
Q ss_pred HHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 28 RCVRDVFKRAR----QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 28 ~~l~~~f~~a~----~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
..++.+-+.+. ...|-|++|||+|.+. ....+.|+..+++ ...+.++|.+|+.++.+.+
T Consensus 124 dqiR~l~~~~~~~~~~~~~kVviIDead~m~---------------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llp 186 (365)
T PRK07471 124 DEVRELISFFGLTAAEGGWRVVIVDTADEMN---------------ANAANALLKVLEE--PPARSLFLLVSHAPARLLP 186 (365)
T ss_pred HHHHHHHHHhCcCcccCCCEEEEEechHhcC---------------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchH
Confidence 44555555444 2357899999999872 2357889999987 3356778889999999999
Q ss_pred hccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCC
Q psy5642 104 ALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEG 153 (237)
Q Consensus 104 al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 153 (237)
.+++ |.. .+.|+.|+.++-.++|...... ..+..+..++..+.|
T Consensus 187 ti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~~l~~~s~G 230 (365)
T PRK07471 187 TIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDPRAALAALAEG 230 (365)
T ss_pred Hhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHHHHHHHHHcCC
Confidence 9998 875 6999999999999999875422 122233455555554
No 145
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00069 Score=62.11 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=103.2
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
....++++|+..= .+-..+|.+-+.+.. ...-|.+|||++-|. ....+.||..++
T Consensus 86 ~~~DviEiDaASn------~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKTLE 144 (515)
T COG2812 86 SLIDVIEIDAASN------TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKTLE 144 (515)
T ss_pred Ccccchhhhhhhc------cChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhcccc
Confidence 3455666666422 246667777777664 234599999999883 345789999999
Q ss_pred CCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccccc
Q psy5642 82 GIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQS 160 (237)
Q Consensus 82 ~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~ 160 (237)
+ +..+|++|.+|..+..+|+.+++ |.. .+.|...+.++....|...+.+..+. .+..+.-+|...+| +.+|..
T Consensus 145 E--PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 E--PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred c--CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 8 55689999999999999999999 986 48999999999999999999887776 56677778888876 446644
Q ss_pred chhHHhhhhc
Q psy5642 161 LSKHRAKKIR 170 (237)
Q Consensus 161 ~~~~~a~~~~ 170 (237)
.+.+.+....
T Consensus 219 slLDq~i~~~ 228 (515)
T COG2812 219 SLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHcc
Confidence 5555554443
No 146
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0033 Score=59.14 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+... ...|++|||+|.+.. ...+.|+..|++.. ...++|.+++.++.+.
T Consensus 102 vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLLk~LEepp--~~tv~Il~t~~~~kll 164 (585)
T PRK14950 102 VDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALLKTLEEPP--PHAIFILATTEVHKVP 164 (585)
T ss_pred HHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHHHHHhcCC--CCeEEEEEeCChhhhh
Confidence 34456655554432 345999999988732 34677888888843 4567777778888899
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
+.+++ |+. .++|+.++..+...+++..+...+.. .+..+..++..+.| +.++
T Consensus 165 ~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~ 217 (585)
T PRK14950 165 ATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRD 217 (585)
T ss_pred HHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 99988 875 58999999999999999888766543 45567777777755 4444
No 147
>PRK06620 hypothetical protein; Validated
Probab=97.32 E-value=0.0024 Score=52.35 Aligned_cols=89 Identities=11% Similarity=0.216 Sum_probs=62.4
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc--cchhccCCCCcc--cEEEe
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR--IDKALLRPGRLD--RLIYV 117 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~--ld~al~r~gRf~--~~i~~ 117 (237)
..+|+|||+|.+ + ...+-.+.+.+. ..++.++|+++..|.. + +++++ |+. .++.+
T Consensus 86 ~d~lliDdi~~~-------~--------~~~lf~l~N~~~---e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l 144 (214)
T PRK06620 86 YNAFIIEDIENW-------Q--------EPALLHIFNIIN---EKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILL 144 (214)
T ss_pred CCEEEEeccccc-------h--------HHHHHHHHHHHH---hcCCEEEEEcCCCccccch-HHHHH--HHhCCceEee
Confidence 468999999943 0 122334444443 3356778888777665 5 78999 985 46899
Q ss_pred cCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHC
Q psy5642 118 PLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLT 151 (237)
Q Consensus 118 ~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t 151 (237)
..|+.+.+..+++......++. ++..+.-|+...
T Consensus 145 ~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~ 179 (214)
T PRK06620 145 NSPDDELIKILIFKHFSISSVTISRQIIDFLLVNL 179 (214)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 9999999999999887755443 566667777766
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.30 E-value=0.0027 Score=62.15 Aligned_cols=132 Identities=23% Similarity=0.265 Sum_probs=82.9
Q ss_pred ceEEEEEeccccccc------------ccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHH
Q psy5642 7 LTEVVESIGPELFRK------------YVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 74 (237)
...++.++++++... |+|..+.. .+....+...++||+|||+|..- ..+.+
T Consensus 624 ~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~---------------~~v~~ 686 (852)
T TIGR03345 624 EQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAH---------------PDVLE 686 (852)
T ss_pred CcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcC---------------HHHHH
Confidence 456778887765322 44432211 12344455677999999998642 24567
Q ss_pred HHHHHhcCCC---------CCCCEEEEEEeCCCC-----------------------------ccchhccCCCCcccEEE
Q psy5642 75 QMLTEMDGIV---------PLNNVTIVAATNRPD-----------------------------RIDKALLRPGRLDRLIY 116 (237)
Q Consensus 75 ~ll~~l~~~~---------~~~~v~vI~ttn~~~-----------------------------~ld~al~r~gRf~~~i~ 116 (237)
.|++.++.-. .-.+.++|.|||... .+.|+++. |++ +|.
T Consensus 687 ~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~ 763 (852)
T TIGR03345 687 LFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIP 763 (852)
T ss_pred HHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEE
Confidence 7777776422 114688999988522 14577777 897 899
Q ss_pred ecCCCHHHHHHHHHHHHcCC--------CCC---chhhHHHHHHHCCC--CCccc
Q psy5642 117 VPLPDDLTRAAILKIRLARS--------PLG---EDVCVEELVRLTEG--YSGAE 158 (237)
Q Consensus 117 ~~~P~~~~R~~il~~~l~~~--------~~~---~~~~~~~la~~t~g--~s~~D 158 (237)
|.+.+.++-..|+...+... +.. .+..++.|+..+.+ |..+.
T Consensus 764 F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~ 818 (852)
T TIGR03345 764 YLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARN 818 (852)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHH
Confidence 99999999999998766431 221 44556667776533 34444
No 149
>KOG0989|consensus
Probab=97.30 E-value=0.0021 Score=54.82 Aligned_cols=125 Identities=17% Similarity=0.207 Sum_probs=86.4
Q ss_pred EEEEEecccccccccC-hHHHHHHHHHHHHHh--cCC----eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 9 EVVESIGPELFRKYVG-ESERCVRDVFKRARQ--VSP----SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g-~~~~~l~~~f~~a~~--~~P----~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
.+++...|+..++.++ +.-++..++-..-.. ..| -|++|||+|.+.. ..-+.|...|+
T Consensus 90 rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aLrr~mE 154 (346)
T KOG0989|consen 90 RVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAALRRTME 154 (346)
T ss_pred chhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHHHHHHh
Confidence 3445555655555433 333333333332211 122 4999999999843 24567788888
Q ss_pred CCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 82 GIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 82 ~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
.. ...+.+|..||+++.|+..+.+ |..+ +.|+....+....-|+....+..++ .+..+..++..++|
T Consensus 155 ~~--s~~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 155 DF--SRTTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred cc--ccceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 83 3578899999999999999999 9876 8888888888888888888777766 66677778886654
No 150
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.00072 Score=59.26 Aligned_cols=86 Identities=19% Similarity=0.236 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-..++.+.+.+... .--|++||++|.+.. ...|.||+.|++ +..++++|.+|++++.|.
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~LL 176 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLEE--PPPGTVFLLVSARIDRLL 176 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhcC--CCcCcEEEEEECChhhCc
Confidence 45666666655432 234999999999833 357899999998 557899999999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHH
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIR 132 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~ 132 (237)
|.|++ |. ..+.|++|+.++..+.|...
T Consensus 177 pTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 177 PTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 99999 98 47999999999988888753
No 151
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.28 E-value=0.002 Score=52.38 Aligned_cols=119 Identities=20% Similarity=0.282 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHHHHhcC-CeEEEEccccccc-cccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 24 GESERCVRDVFKRARQVS-PSVIFFDELDSLA-GERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 24 g~~~~~l~~~f~~a~~~~-P~il~iDeid~l~-~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
......+..+++...... +.||+|||++.+. ... . ...++..+.+.++......++.+|.+++.....
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--~--------~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~ 169 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--E--------DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLM 169 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--T--------THHHHHHHHHHHHH----TTEEEEEEESSHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--c--------hHHHHHHHHHHHhhccccCCceEEEECCchHHH
Confidence 345677788888877653 4899999999998 221 1 145667777777775555666666666553322
Q ss_pred c------hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCC-C-CchhhHHHHHHHCCCCC
Q psy5642 102 D------KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSP-L-GEDVCVEELVRLTEGYS 155 (237)
Q Consensus 102 d------~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~-~-~~~~~~~~la~~t~g~s 155 (237)
. ..+.. |+.. +.+++.+.++..++++..+.... + .++.++..+...|.|+.
T Consensus 170 ~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 170 EEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-H
T ss_pred HHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCH
Confidence 2 22333 7777 99999999999999999876652 1 26888999999998864
No 152
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0019 Score=55.94 Aligned_cols=97 Identities=23% Similarity=0.362 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC--------CCCCCEEEEEEe---
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI--------VPLNNVTIVAAT--- 95 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~v~vI~tt--- 95 (237)
+..-+.+.+.|.. -.||||||||.++...+..+. +....-+...+|-.+.+. ...+.|++||+-
T Consensus 238 e~i~~eAi~~aE~--~GIvFIDEIDKIa~~~~~g~~---dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh 312 (444)
T COG1220 238 EEIKQEAIDAAEQ--NGIVFIDEIDKIAKRGGSGGP---DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFH 312 (444)
T ss_pred HHHHHHHHHHHHh--cCeEEEehhhHHHhcCCCCCC---CcchhhhcccccccccCceeeccccccccceEEEEecCcee
Confidence 4444555555554 479999999999987653221 112234556677776653 234569999985
Q ss_pred -CCCCccchhccCCCCcccEEEecCCCHHHHHHHHH
Q psy5642 96 -NRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILK 130 (237)
Q Consensus 96 -n~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~ 130 (237)
..|++|=|.|.. ||.-.|++...+.++-..||.
T Consensus 313 ~sKPSDLiPELQG--RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 313 VAKPSDLIPELQG--RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred cCChhhcChhhcC--CCceEEEcccCCHHHHHHHHc
Confidence 568888888887 999999999999999998883
No 153
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0031 Score=54.95 Aligned_cols=86 Identities=13% Similarity=0.234 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...+|.+-+.+.. ..--|++||++|.+.. ...+.||..|++ +..++++|.+|++++.|.
T Consensus 89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~ll 151 (325)
T PRK06871 89 VDQVREINEKVSQHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLEE--PRPNTYFLLQADLSAALL 151 (325)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEechhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCc
Confidence 4555555555443 2345999999999833 357899999999 556889999999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHH
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIR 132 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~ 132 (237)
|.|++ |.. .+.|++|+.++-.+.|...
T Consensus 152 pTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 152 PTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred hHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 99999 875 5899999999888888764
No 154
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.24 E-value=0.0078 Score=52.90 Aligned_cols=148 Identities=11% Similarity=0.072 Sum_probs=88.7
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC-----------CCCCCEEEEEEeCCCC-ccchhccCCC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI-----------VPLNNVTIVAATNRPD-RIDKALLRPG 109 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~v~vI~ttn~~~-~ld~al~r~g 109 (237)
..+||+||++.+-+ .+.+.|+..|+.- ....++++|+|.|-.+ .+++++..
T Consensus 145 ~GiL~lDEInrL~~---------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld-- 207 (350)
T CHL00081 145 RGILYVDEVNLLDD---------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD-- 207 (350)
T ss_pred CCEEEecChHhCCH---------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--
Confidence 46999999998833 3445566665431 1123688888888544 69999999
Q ss_pred CcccEEEecCCC-HHHHHHHHHHHHcCCCCC-------------chhhHHHHHHHCCCCCccc--ccchhHHhhhhcccc
Q psy5642 110 RLDRLIYVPLPD-DLTRAAILKIRLARSPLG-------------EDVCVEELVRLTEGYSGAE--QSLSKHRAKKIRPRR 173 (237)
Q Consensus 110 Rf~~~i~~~~P~-~~~R~~il~~~l~~~~~~-------------~~~~~~~la~~t~g~s~~D--l~~~~~~a~~~~~~~ 173 (237)
||...+.+.+|+ .+.|.+|++......... ...++...-+....-...| +..+++-+.....
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~-- 285 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDV-- 285 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCC--
Confidence 999999999997 599999998754311000 0111211222222222222 4444444433321
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 174 ESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 174 ~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
.++.+-..+++-|...+.-++ ...|+.+|+..+..
T Consensus 286 -------~s~Ra~i~l~raArA~Aal~G--R~~V~pdDv~~~a~ 320 (350)
T CHL00081 286 -------DGLRGDIVTNRAAKALAAFEG--RTEVTPKDIFKVIT 320 (350)
T ss_pred -------CCChHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHH
Confidence 122235555666666666666 44699999998865
No 155
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0096 Score=56.23 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+.. ...-|++|||+|.+.. ...+.|+..|+... ...++|.+|+.+..|.
T Consensus 109 vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~a~naLLK~LEePp--~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 109 VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------AAFNAFLKTLEEPP--PHAIFIFATTELHKIP 171 (620)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------HHHHHHHHHHhCCC--CCeEEEEEeCChhhhh
Confidence 4556666555532 2345999999988832 23678999998843 4566666777789999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+.|++ |. ..++|..++.++-...++..+...+.. .+..+..++..+.|
T Consensus 172 ~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 172 ATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 99998 77 479999999999988888887765543 56677778877754
No 156
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0095 Score=50.51 Aligned_cols=96 Identities=20% Similarity=0.263 Sum_probs=73.5
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC----------------CCCCEEEEEEeCCCCccchhc
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV----------------PLNNVTIVAATNRPDRIDKAL 105 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vI~ttn~~~~ld~al 105 (237)
..|||||||+.+.+.- .+ .|...|+.+. .-.+.-+||+|.+...+...|
T Consensus 104 ~DVLFIDEIHrl~~~v------------EE---~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PL 168 (332)
T COG2255 104 GDVLFIDEIHRLSPAV------------EE---VLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPL 168 (332)
T ss_pred CCeEEEehhhhcChhH------------HH---HhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchh
Confidence 4699999999984431 22 2333344332 113588999999999999999
Q ss_pred cCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCC
Q psy5642 106 LRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGY 154 (237)
Q Consensus 106 ~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~ 154 (237)
+. ||..+..+..-+.++-.+|++..-..+... .+....++|.++.|-
T Consensus 169 rd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 169 RD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred HH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 99 999999999999999999999877666555 566777899988773
No 157
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0028 Score=55.45 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRAR----QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~----~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...+|.+-+.+. ....-|++||++|.+.. ...|.||+.|++ +..+.++|.+|++++.|.
T Consensus 90 idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lL 152 (334)
T PRK07993 90 VDAVREVTEKLYEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLEE--PPENTWFFLACREPARLL 152 (334)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCh
Confidence 344444444443 33455999999999833 357999999999 557899999999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHH
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKI 131 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~ 131 (237)
|.|++ |.. .+.|+.|+.++..+.|..
T Consensus 153 pTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 153 ATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred HHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 99999 987 489999999888877754
No 158
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.0039 Score=55.90 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+... ...|++|||+|.+.. ...+.|+..+++. ....++|.+|+.+..+.
T Consensus 109 id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 109 VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------AAFNAFLKTLEEP--PPHAIFIFATTELHKIP 171 (397)
T ss_pred HHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------HHHHHHHHHHhcC--CCCeEEEEEeCChHHhH
Confidence 45566665555321 235999999988832 2356778888763 34566666777788999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+.+++ |.. .++|+.++.++-...++..+...+.. .+..+..++..+.|
T Consensus 172 ~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g 220 (397)
T PRK14955 172 ATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG 220 (397)
T ss_pred HHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99998 875 69999999999998888888665543 56667777776643
No 159
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.15 E-value=0.0052 Score=52.60 Aligned_cols=151 Identities=18% Similarity=0.238 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC--ccchhc
Q psy5642 28 RCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD--RIDKAL 105 (237)
Q Consensus 28 ~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~--~ld~al 105 (237)
+.-..+....+..++-+|+|||++.++..... .++.+-.+|..|.+-. .=.++.+||-.-.. .-|+-+
T Consensus 132 ~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~---------~qr~~Ln~LK~L~NeL-~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 132 KLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR---------KQREFLNALKFLGNEL-QIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred HHHHHHHHHHHHcCCcEEEeechHHHhcccHH---------HHHHHHHHHHHHhhcc-CCCeEEeccHHHHHHhccCHHH
Confidence 33344456667778899999999998764322 1333334444443311 12466677644333 336777
Q ss_pred cCCCCcccEEEecCCC-HHHHHHHHHHHHcCCCCC--c---hhh-HHHHHHHCCCCCcccccchhHHhhhhccccCCCCC
Q psy5642 106 LRPGRLDRLIYVPLPD-DLTRAAILKIRLARSPLG--E---DVC-VEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPG 178 (237)
Q Consensus 106 ~r~gRf~~~i~~~~P~-~~~R~~il~~~l~~~~~~--~---~~~-~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~ 178 (237)
-+ ||+. +.+|... .++...++..+-..+++. + +.. ...+-..|+|.+| +
T Consensus 202 a~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~-------------------- 257 (302)
T PF05621_consen 202 AS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-E-------------------- 257 (302)
T ss_pred Hh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-H--------------------
Confidence 77 9975 7778663 346667777776666654 2 222 2456677777766 4
Q ss_pred CCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCC
Q psy5642 179 PPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPR 222 (237)
Q Consensus 179 ~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~ 222 (237)
+.+++..|+..++..+.+ .||.+.+.. +.-+.|+
T Consensus 258 -------l~~ll~~aA~~AI~sG~E--~It~~~l~~-~~~~~ps 291 (302)
T PF05621_consen 258 -------LSRLLNAAAIAAIRSGEE--RITREILDK-IDWVPPS 291 (302)
T ss_pred -------HHHHHHHHHHHHHhcCCc--eecHHHHhh-CCCcChh
Confidence 788899999999988844 477666654 3334443
No 160
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.07 E-value=0.011 Score=51.62 Aligned_cols=160 Identities=22% Similarity=0.272 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeC-------
Q psy5642 25 ESERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATN------- 96 (237)
Q Consensus 25 ~~~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn------- 96 (237)
+..+.+.++.++-++ .-|.||||||++-|-- +..+-|-..|.. .-.+|+++||-.
T Consensus 274 ~vn~~V~~~ieeGkAElVpGVLFIDEvHmLDI---------------E~FsFlnrAlEs--e~aPIii~AtNRG~~kiRG 336 (450)
T COG1224 274 EVNEKVKKWIEEGKAELVPGVLFIDEVHMLDI---------------ECFSFLNRALES--ELAPIIILATNRGMTKIRG 336 (450)
T ss_pred HHHHHHHHHHhcCcEEeecceEEEechhhhhH---------------HHHHHHHHHhhc--ccCcEEEEEcCCceeeecc
Confidence 344445555555443 3599999999988721 223333333444 223555544422
Q ss_pred ----CCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhHHhhhhcc
Q psy5642 97 ----RPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKHRAKKIRP 171 (237)
Q Consensus 97 ----~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~ 171 (237)
.|..||..++. |. .+|...+-+.++.++|++.......+. .+..++.|+...+.-|-+-
T Consensus 337 Td~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRY------------- 400 (450)
T COG1224 337 TDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRY------------- 400 (450)
T ss_pred cCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHH-------------
Confidence 35577888887 76 356666778899999999887665554 5667777777665333333
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCC-CHHHHHHHHH
Q psy5642 172 RRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRT-PPQLIKLYEN 233 (237)
Q Consensus 172 ~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~-~~~~~~~~~~ 233 (237)
-.++...|...+.+++ ...|..+|...|-..|.... |-+.++++++
T Consensus 401 --------------a~qLL~pa~iiA~~rg--~~~V~~~dVe~a~~lF~D~krSv~~v~~~~~ 447 (450)
T COG1224 401 --------------AVQLLTPASIIAKRRG--SKRVEVEDVERAKELFLDVKRSVEYVEKYEG 447 (450)
T ss_pred --------------HHHhccHHHHHHHHhC--CCeeehhHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3355566667776665 34588899999988776532 4455555543
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.03 E-value=0.017 Score=56.72 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=71.2
Q ss_pred ceEEEEEecccccccc------------cChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHH
Q psy5642 7 LTEVVESIGPELFRKY------------VGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~------------~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 74 (237)
..+++.++++.+.... +|-.+ -..+....+....+||+|||+|.+- ..+.+
T Consensus 623 ~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~---------------~~v~~ 685 (852)
T TIGR03346 623 EDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAH---------------PDVFN 685 (852)
T ss_pred CCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCC---------------HHHHH
Confidence 4578888887654321 11111 0122333344455699999999762 24567
Q ss_pred HHHHHhcCCC---------CCCCEEEEEEeCCCCc-------------------------cchhccCCCCcccEEEecCC
Q psy5642 75 QMLTEMDGIV---------PLNNVTIVAATNRPDR-------------------------IDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 75 ~ll~~l~~~~---------~~~~v~vI~ttn~~~~-------------------------ld~al~r~gRf~~~i~~~~P 120 (237)
.|++.|+.-. .-.+.+||+|||.... +.|.|.. |+|.++.|.++
T Consensus 686 ~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL 763 (852)
T TIGR03346 686 VLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPL 763 (852)
T ss_pred HHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCc
Confidence 7777775421 1245789999998322 3466776 99999999999
Q ss_pred CHHHHHHHHHHHHc
Q psy5642 121 DDLTRAAILKIRLA 134 (237)
Q Consensus 121 ~~~~R~~il~~~l~ 134 (237)
+.+...+|+...+.
T Consensus 764 ~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 764 GREQIARIVEIQLG 777 (852)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
No 162
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.01 E-value=0.0026 Score=55.17 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=72.0
Q ss_pred ceEEEEEeccccccc--ccChHHH----------HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHH
Q psy5642 7 LTEVVESIGPELFRK--YVGESER----------CVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~--~~g~~~~----------~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 74 (237)
+.+++.|.++...+. ++|...- .....+-+|.. .+++|++||+|..-++ ....++
T Consensus 89 ~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEin~a~p~------------~~~~L~ 155 (327)
T TIGR01650 89 NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEYDAGRPD------------VMFVIQ 155 (327)
T ss_pred CCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechhhccCHH------------HHHHHH
Confidence 456777766554444 4443211 11123445554 5789999999987221 123344
Q ss_pred HHHHH-----hcC----CCCCCCEEEEEEeCCCC------------ccchhccCCCCcccEEEecCCCHHHHHHHHHHHH
Q psy5642 75 QMLTE-----MDG----IVPLNNVTIVAATNRPD------------RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133 (237)
Q Consensus 75 ~ll~~-----l~~----~~~~~~v~vI~ttn~~~------------~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l 133 (237)
.+|+. +.+ +.....+.||||.|..+ .++++++. ||-..+.+++|+.++-.+|+....
T Consensus 156 ~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 156 RVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 44442 111 11223588999999754 56899999 998888999999999999998765
Q ss_pred cC
Q psy5642 134 AR 135 (237)
Q Consensus 134 ~~ 135 (237)
..
T Consensus 234 ~~ 235 (327)
T TIGR01650 234 KG 235 (327)
T ss_pred cC
Confidence 43
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.0071 Score=52.57 Aligned_cols=106 Identities=16% Similarity=0.255 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhcC----CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 26 SERCVRDVFKRARQVS----PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~~----P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+...+|.+.+.+.... --|++||++|.+.. ...|.||+.|++ +..++++|.+|++++.|
T Consensus 94 ~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 94 VIEQVREISQKLALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEE--PSPGRYLWLISAQPARL 156 (319)
T ss_pred cHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhC--CCCCCeEEEEECChhhC
Confidence 3566777776665532 24999999999832 357899999999 44678888899999999
Q ss_pred chhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCc
Q psy5642 102 DKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSG 156 (237)
Q Consensus 102 d~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~ 156 (237)
.|.|++ |.. .+.|+.|+.++-.+.|... +. ...+...++..+.|-.+
T Consensus 157 LpTIrS--RCq-~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 157 PATIRS--RCQ-RLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPG 203 (319)
T ss_pred chHHHh--hhe-EeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHH
Confidence 999999 986 5899999998777777542 22 22334455666655433
No 164
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.96 E-value=0.0051 Score=58.08 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=66.5
Q ss_pred CEEEEEEeCCC--CccchhccCCCCcc---cEEEec--CC-CHHHHHHHHHHHHc---CCCCCchhhHHHHHHHCCCCCc
Q psy5642 88 NVTIVAATNRP--DRIDKALLRPGRLD---RLIYVP--LP-DDLTRAAILKIRLA---RSPLGEDVCVEELVRLTEGYSG 156 (237)
Q Consensus 88 ~v~vI~ttn~~--~~ld~al~r~gRf~---~~i~~~--~P-~~~~R~~il~~~l~---~~~~~~~~~~~~la~~t~g~s~ 156 (237)
++.+|+++|.. ..+++.++. ||+ ..++|+ .| +.+.|..+++.... +.+..+ .++.
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~------------~~s~ 333 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIP------------HFTR 333 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCC------------cCCH
Confidence 57889998864 689999999 999 666664 34 45666665554332 221111 2222
Q ss_pred ccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCC
Q psy5642 157 AEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 157 ~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p 221 (237)
.-++.+++.+.+.+..|. ....+...|.++++.|...+..++ ...|+.+|+.+|++..+.
T Consensus 334 ~Av~~Li~~~~R~ag~r~---~lsl~~R~L~~llR~A~~iA~~~~--~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 334 DAVEEIVREAQRRAGRKD---HLTLRLRELGGLVRAAGDIAKSSG--KVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHHHHHHHHHHHhccc---ccCCCHHHHHHHHHHHHHHHHhcC--CceecHHHHHHHHHHHHH
Confidence 223333333332221111 111222338899999866555444 457999999999887654
No 165
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.0049 Score=53.55 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...+|.+-+.+... .--|++||++|.+.. ...|.||+.|++ +..++++|.+|++++.|.
T Consensus 90 vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCh
Confidence 44555555444432 245999999999832 357899999999 556899999999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHH
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKI 131 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~ 131 (237)
|.|++ |.. .+.|+.|+.++..+.|..
T Consensus 153 pTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 153 PTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 99999 986 699999999988887764
No 166
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.014 Score=55.22 Aligned_cols=107 Identities=13% Similarity=0.193 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+... ..-|++|||+|.+.. ...+.|+..|+... ...++|.+|+.+..|-
T Consensus 103 vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK~LEepp--~~tifIL~tt~~~kIl 165 (614)
T PRK14971 103 VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLKTLEEPP--SYAIFILATTEKHKIL 165 (614)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHHHHhCCC--CCeEEEEEeCCchhch
Confidence 46677777766543 233999999988822 34678999999843 4666777777789999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+.|++ |.. .++|..++..+-...++..+...++. ....+..|+..+.|
T Consensus 166 ~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 166 PTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99998 874 69999999999999999888776654 44557778877743
No 167
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.84 E-value=0.027 Score=55.18 Aligned_cols=110 Identities=22% Similarity=0.294 Sum_probs=73.4
Q ss_pred ceEEEEEeccccccc------------ccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHH
Q psy5642 7 LTEVVESIGPELFRK------------YVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 74 (237)
..+++.++.+++... |+|-.+ ...+.+..+....+||+|||+|... ..+.+
T Consensus 567 ~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~---------------~~v~~ 629 (821)
T CHL00095 567 EDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAH---------------PDIFN 629 (821)
T ss_pred ccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCC---------------HHHHH
Confidence 456777877765321 222111 1234444555555899999999762 24677
Q ss_pred HHHHHhcCCC---------CCCCEEEEEEeCCCCc-------------------------------------cchhccCC
Q psy5642 75 QMLTEMDGIV---------PLNNVTIVAATNRPDR-------------------------------------IDKALLRP 108 (237)
Q Consensus 75 ~ll~~l~~~~---------~~~~v~vI~ttn~~~~-------------------------------------ld~al~r~ 108 (237)
.|++.|+.-. .-++.++|.|||.... +.|.++.
T Consensus 630 ~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln- 708 (821)
T CHL00095 630 LLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN- 708 (821)
T ss_pred HHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc-
Confidence 7888877521 1246899999986321 2356777
Q ss_pred CCcccEEEecCCCHHHHHHHHHHHHcC
Q psy5642 109 GRLDRLIYVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 109 gRf~~~i~~~~P~~~~R~~il~~~l~~ 135 (237)
|+|.+|.|.+.+.++-.+|+...+..
T Consensus 709 -Rid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 709 -RLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred -cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999877653
No 168
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.83 E-value=0.013 Score=55.10 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=88.3
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCCC---ccchhccCC
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRPD---RIDKALLRP 108 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~---~ld~al~r~ 108 (237)
.+|||||++.+-. .+.+.|+..|+.-. ...++.||+|+|..+ .+++++..
T Consensus 86 GvL~lDEi~rl~~---------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld- 149 (589)
T TIGR02031 86 GVLYVDMANLLDD---------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD- 149 (589)
T ss_pred CcEeccchhhCCH---------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH-
Confidence 5999999998832 35666777775321 113588999988765 79999999
Q ss_pred CCcccEEEecC-CCHHHHHHHHHHHHcCCC----CCchhhHHHHHH---HCCCCC--cccccchhHHhhhhccccCCCCC
Q psy5642 109 GRLDRLIYVPL-PDDLTRAAILKIRLARSP----LGEDVCVEELVR---LTEGYS--GAEQSLSKHRAKKIRPRRESNPG 178 (237)
Q Consensus 109 gRf~~~i~~~~-P~~~~R~~il~~~l~~~~----~~~~~~~~~la~---~t~g~s--~~Dl~~~~~~a~~~~~~~~~~~~ 178 (237)
||..+|.+.. |+..+|.+|++..+.... ........++.. ...... ...+..++..+..+...
T Consensus 150 -Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~------ 222 (589)
T TIGR02031 150 -RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGIS------ 222 (589)
T ss_pred -hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCC------
Confidence 9999888876 477889999988763221 111122222221 112222 22244555555433321
Q ss_pred CCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhc
Q psy5642 179 PPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLV 219 (237)
Q Consensus 179 ~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~ 219 (237)
....-..+++-|...+.-++ ...|+.+|+..|+.-+
T Consensus 223 ---s~Ra~i~~~r~ArA~Aal~g--r~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 223 ---GHRADLFAVRAAKAHAALHG--RTEVTEEDLKLAVELV 258 (589)
T ss_pred ---CccHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Confidence 01113344455555555555 4569999999997643
No 169
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.79 E-value=0.0041 Score=54.24 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=54.1
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC----------CCCCCCEEEEEEeC-----CCCccchhccC
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG----------IVPLNNVTIVAATN-----RPDRIDKALLR 107 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~----------~~~~~~v~vI~ttn-----~~~~ld~al~r 107 (237)
+|+++|||+..- ..+.+.|+..|+. +.-....+||+|.| ....+++++++
T Consensus 114 ~ill~DEInra~---------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld 178 (329)
T COG0714 114 VILLLDEINRAP---------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD 178 (329)
T ss_pred eEEEEeccccCC---------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh
Confidence 499999997652 2456777777765 22235689999999 66789999999
Q ss_pred CCCcccEEEecCC-CHHHHHHHHHHHH
Q psy5642 108 PGRLDRLIYVPLP-DDLTRAAILKIRL 133 (237)
Q Consensus 108 ~gRf~~~i~~~~P-~~~~R~~il~~~l 133 (237)
||-..+++++| +..+...++....
T Consensus 179 --Rf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 179 --RFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred --hEEEEEecCCCCchHHHHHHHHhCc
Confidence 99989999999 5545555554443
No 170
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.013 Score=50.82 Aligned_cols=104 Identities=11% Similarity=0.221 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+... ..-|++||++|.+. ....+.|+..|++ +..++++|.+|++++.+.
T Consensus 75 v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~---------------~~a~naLLK~LEe--pp~~t~~il~~~~~~~ll 137 (313)
T PRK05564 75 VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT---------------EQAQNAFLKTIEE--PPKGVFIILLCENLEQIL 137 (313)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEechhhcC---------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCc
Confidence 34577776655432 34599999998872 2346889999998 445667777778899999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEG 153 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 153 (237)
+.+++ |.. .++|+.|+.++-..++...+.. . .......++..+.|
T Consensus 138 ~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 138 DTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred HHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 99999 874 7999999999988888765532 1 23445556666655
No 171
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.68 E-value=0.045 Score=45.59 Aligned_cols=129 Identities=21% Similarity=0.239 Sum_probs=85.1
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV- 84 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~- 84 (237)
++.+|+|...+|.+ |-++++..+. ..+-|||+||+- ....+ .--..|...|++-.
T Consensus 80 GLRlIev~k~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs---Fe~~d-----------~~yk~LKs~LeGgle 136 (249)
T PF05673_consen 80 GLRLIEVSKEDLGD---------LPELLDLLRDRPYKFILFCDDLS---FEEGD-----------TEYKALKSVLEGGLE 136 (249)
T ss_pred CceEEEECHHHhcc---------HHHHHHHHhcCCCCEEEEecCCC---CCCCc-----------HHHHHHHHHhcCccc
Confidence 47788888877654 4556666553 356799999853 22111 11345555566532
Q ss_pred -CCCCEEEEEEeCCCCccchhccC---------------------CCCcccEEEecCCCHHHHHHHHHHHHcCCCCCch-
Q psy5642 85 -PLNNVTIVAATNRPDRIDKALLR---------------------PGRLDRLIYVPLPDDLTRAAILKIRLARSPLGED- 141 (237)
Q Consensus 85 -~~~~v~vI~ttn~~~~ld~al~r---------------------~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~- 141 (237)
...+|++.||+|+-..|++.... ..||..+|.|..|+.++=.+|.+.++..+++.-+
T Consensus 137 ~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~ 216 (249)
T PF05673_consen 137 ARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDE 216 (249)
T ss_pred cCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 24579999999987766554332 1289999999999999999999999987776522
Q ss_pred hhHHH----HHHHCCCCCccc
Q psy5642 142 VCVEE----LVRLTEGYSGAE 158 (237)
Q Consensus 142 ~~~~~----la~~t~g~s~~D 158 (237)
..+.. -|..-.|.||+-
T Consensus 217 e~l~~~Al~wa~~rg~RSGRt 237 (249)
T PF05673_consen 217 EELRQEALQWALRRGGRSGRT 237 (249)
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 33322 233445777776
No 172
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.65 E-value=0.0097 Score=53.84 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhc--CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc--------------------CCCCC
Q psy5642 29 CVRDVFKRARQV--SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD--------------------GIVPL 86 (237)
Q Consensus 29 ~l~~~f~~a~~~--~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~--------------------~~~~~ 86 (237)
.+.+++..|+.. .|++|+|||++..... ++...++..|+ .+.-.
T Consensus 258 ~f~~~~~~A~~~p~~~~vliIDEINRani~--------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 258 IFYNFCQQAKEQPEKKYVFIIDEINRANLS--------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred hHHHHHHHHHhcccCCcEEEEehhhccCHH--------------HhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 345566677653 5899999999864322 22333333332 12234
Q ss_pred CCEEEEEEeCCCC----ccchhccCCCCcccEEEecC
Q psy5642 87 NNVTIVAATNRPD----RIDKALLRPGRLDRLIYVPL 119 (237)
Q Consensus 87 ~~v~vI~ttn~~~----~ld~al~r~gRf~~~i~~~~ 119 (237)
.++.||||+|..+ .+|.|++| ||.. |++.+
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 5799999999988 89999999 9964 77765
No 173
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.46 E-value=0.049 Score=51.81 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=55.6
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCC-CccchhccCCCC
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRP-DRIDKALLRPGR 110 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~-~~ld~al~r~gR 110 (237)
.||||||++.+-. .+.+.|+..|+.-. ...++.+|+|+|.. ..++++|+. |
T Consensus 128 GiL~lDEi~~l~~---------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R 190 (633)
T TIGR02442 128 GILYIDEVNLLDD---------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--R 190 (633)
T ss_pred CeEEeChhhhCCH---------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--h
Confidence 5999999998832 35666777765321 11358999998853 368999999 9
Q ss_pred cccEEEecCC-CHHHHHHHHHHHHc
Q psy5642 111 LDRLIYVPLP-DDLTRAAILKIRLA 134 (237)
Q Consensus 111 f~~~i~~~~P-~~~~R~~il~~~l~ 134 (237)
|+..|.++.| +.++|.++++..+.
T Consensus 191 ~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 191 FGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred cceEEEccCCCchHHHHHHHHHHHh
Confidence 9999999988 46788899886553
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.46 E-value=0.021 Score=41.83 Aligned_cols=87 Identities=29% Similarity=0.329 Sum_probs=55.3
Q ss_pred cChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC-CCcc
Q psy5642 23 VGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR-PDRI 101 (237)
Q Consensus 23 ~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~-~~~l 101 (237)
.......++.++..+....|.+|+|||++.+........ .................+..+|+++|. ....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 130 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEAL---------LLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH---------HHhhhhhHHHHHHHhcCCCEEEEEeCCCccCc
Confidence 345677888999999998889999999999865421100 000000001111112346778888886 5566
Q ss_pred chhccCCCCcccEEEecCC
Q psy5642 102 DKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 102 d~al~r~gRf~~~i~~~~P 120 (237)
+..+++ |++..+.+..+
T Consensus 131 ~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 131 PALLRR--RFDRRIVLLLI 147 (148)
T ss_pred hhhhhh--ccceEEEecCC
Confidence 667776 99998888765
No 175
>KOG2680|consensus
Probab=96.45 E-value=0.13 Score=44.29 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=83.5
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEE---------eC--CCCccchhccCCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAA---------TN--RPDRIDKALLRPG 109 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t---------tn--~~~~ld~al~r~g 109 (237)
-|.+|||||++-|--. -.+-|-..+.+ .-.++++++| || +|..||-.++.
T Consensus 288 vpGVLFIDEvHMLDIE---------------cFsFlNrAlE~--d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD-- 348 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIE---------------CFSFLNRALEN--DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD-- 348 (454)
T ss_pred ccceEEEeeehhhhhH---------------HHHHHHHHhhh--ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--
Confidence 4999999999887221 11112222333 1234555444 33 35578888887
Q ss_pred CcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCCCCCCchhHHH
Q psy5642 110 RLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVA 188 (237)
Q Consensus 110 Rf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 188 (237)
|. .+|.-.+-+.++-..||+.......+. .+..++-|....+.-+-+- -.+
T Consensus 349 R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRY---------------------------ai~ 400 (454)
T KOG2680|consen 349 RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRY---------------------------AIH 400 (454)
T ss_pred hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHH---------------------------HHH
Confidence 76 356666678899999999877654433 3333333433332222222 234
Q ss_pred HHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCC-CHHHHHHHH
Q psy5642 189 VCDEAALSALENNLEAAYVSHQDFLTALQLVKPRT-PPQLIKLYE 232 (237)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~-~~~~~~~~~ 232 (237)
+...+...+.++. ...+..+|+..+.+.|-... +.+++.++.
T Consensus 401 Lit~a~~~~~krk--~~~v~~~di~r~y~LFlD~~Rs~~yl~E~~ 443 (454)
T KOG2680|consen 401 LITAASLVCLKRK--GKVVEVDDIERVYRLFLDEKRSMKYLTEYQ 443 (454)
T ss_pred HHHHHHHHHHHhc--CceeehhHHHHHHHHHhhhhhhhHHHHHhh
Confidence 5566677777776 44577899999988776553 455555543
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.34 E-value=0.041 Score=54.10 Aligned_cols=109 Identities=24% Similarity=0.348 Sum_probs=70.0
Q ss_pred ceEEEEEeccccccc------------ccChHHHHHHHHHHHHHhcCC-eEEEEccccccccccCCCCCCCCCchHHHHH
Q psy5642 7 LTEVVESIGPELFRK------------YVGESERCVRDVFKRARQVSP-SVIFFDELDSLAGERGDGGGGGGSNVQERVL 73 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P-~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 73 (237)
+-+++.++++.+... |+|..+ ...+..+....| ++|+|||+|.+- ..+.
T Consensus 626 ~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~---~g~l~~~v~~~p~~vLllDEieka~---------------~~v~ 687 (857)
T PRK10865 626 DDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE---GGYLTEAVRRRPYSVILLDEVEKAH---------------PDVF 687 (857)
T ss_pred CCcEEEEEhHHhhhhhhHHHHhCCCCcccccch---hHHHHHHHHhCCCCeEEEeehhhCC---------------HHHH
Confidence 346788888776432 111111 112333333344 899999998762 2356
Q ss_pred HHHHHHhcCCC---------CCCCEEEEEEeCCCC-------------------------ccchhccCCCCcccEEEecC
Q psy5642 74 AQMLTEMDGIV---------PLNNVTIVAATNRPD-------------------------RIDKALLRPGRLDRLIYVPL 119 (237)
Q Consensus 74 ~~ll~~l~~~~---------~~~~v~vI~ttn~~~-------------------------~ld~al~r~gRf~~~i~~~~ 119 (237)
+.|++.|+.-. .-.+.++|+|||... .+.|+++. |+|.++.|.+
T Consensus 688 ~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~P 765 (857)
T PRK10865 688 NILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHP 765 (857)
T ss_pred HHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCC
Confidence 66777665311 123567899998731 24468888 9999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q psy5642 120 PDDLTRAAILKIRLAR 135 (237)
Q Consensus 120 P~~~~R~~il~~~l~~ 135 (237)
++.+....|++.++..
T Consensus 766 L~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 766 LGEQHIASIAQIQLQR 781 (857)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998877754
No 177
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.017 Score=50.16 Aligned_cols=104 Identities=14% Similarity=0.215 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 28 RCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 28 ~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
..++++-+.+... ..-|++||++|.+.. ...+.||..|++.. +.++|.+|++++.|-+
T Consensus 107 d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~---------------~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~ 168 (314)
T PRK07399 107 EQIREIKRFLSRPPLEAPRKVVVIEDAETMNE---------------AAANALLKTLEEPG---NGTLILIAPSPESLLP 168 (314)
T ss_pred HHHHHHHHHHccCcccCCceEEEEEchhhcCH---------------HHHHHHHHHHhCCC---CCeEEEEECChHhCcH
Confidence 3566666655542 356999999988732 34788999999853 3457778889999999
Q ss_pred hccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCC
Q psy5642 104 ALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGY 154 (237)
Q Consensus 104 al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 154 (237)
.|++ |. ..+.|+.|+.++-.++|........ .+.+...++..+.|-
T Consensus 169 TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a~Gs 214 (314)
T PRK07399 169 TIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALAQGS 214 (314)
T ss_pred HHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHcCCC
Confidence 9999 87 4699999999999999987643221 122345666665543
No 178
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.32 E-value=0.057 Score=48.18 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=64.0
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC---------CC--CCCCEEEEEEeCCC-CccchhccCCC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG---------IV--PLNNVTIVAATNRP-DRIDKALLRPG 109 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~--~~~~v~vI~ttn~~-~~ld~al~r~g 109 (237)
..|||+||+-.|- ..++..||+.+.. +. ..-++++|||.|-. .+|-+-|+.
T Consensus 145 RGIlYvDEvnlL~---------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD-- 207 (423)
T COG1239 145 RGILYVDEVNLLD---------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD-- 207 (423)
T ss_pred CCEEEEecccccc---------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--
Confidence 3599999997761 3567777776643 11 12359999999973 388899999
Q ss_pred CcccEEEecCC-CHHHHHHHHHHHHcCCCCCchhhHHHHHH
Q psy5642 110 RLDRLIYVPLP-DDLTRAAILKIRLARSPLGEDVCVEELVR 149 (237)
Q Consensus 110 Rf~~~i~~~~P-~~~~R~~il~~~l~~~~~~~~~~~~~la~ 149 (237)
||...|.+.+| +.++|.+|.+.-+... ..++..++.++.
T Consensus 208 Rfg~~v~~~~~~~~~~rv~Ii~r~~~f~-~~Pe~f~~~~~~ 247 (423)
T COG1239 208 RFGLEVDTHYPLDLEERVEIIRRRLAFE-AVPEAFLEKYAD 247 (423)
T ss_pred hhcceeeccCCCCHHHHHHHHHHHHHhh-cCcHHHHHHHHH
Confidence 99999999988 7789999999766542 234444444433
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.016 Score=50.56 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+.. ...-|++|||+|.+. ....+.|+..|++ +.+++++|.+|+.++.|.
T Consensus 92 id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~---------------~~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 92 KDQIRYLKEEFSKSGVESNKKVYIIEHADKMT---------------ASAANSLLKFLEE--PSGGTTAILLTENKHQIL 154 (329)
T ss_pred HHHHHHHHHHHhhCCcccCceEEEeehHhhhC---------------HHHHHHHHHHhcC--CCCCceEEEEeCChHhCc
Confidence 3456666655542 234599999998872 2357889999998 445777888999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHH
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKI 131 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~ 131 (237)
+.|++ |.. .++|+.|+.++-.+.|+.
T Consensus 155 ~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 155 PTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 99999 875 699999999887777753
No 180
>PHA02244 ATPase-like protein
Probab=96.25 E-value=0.038 Score=48.88 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=44.8
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc--------CC-CCCCCEEEEEEeCCC-----------Cc
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD--------GI-VPLNNVTIVAATNRP-----------DR 100 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~--------~~-~~~~~v~vI~ttn~~-----------~~ 100 (237)
...+|+|||++.+.+. +...|...++ +. ....++.+|+|+|.+ ..
T Consensus 180 ~GgvLiLDEId~a~p~---------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~ 244 (383)
T PHA02244 180 KGGLFFIDEIDASIPE---------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNK 244 (383)
T ss_pred cCCEEEEeCcCcCCHH---------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcc
Confidence 5789999999987332 2333333333 11 123468999999973 57
Q ss_pred cchhccCCCCcccEEEecCCCH
Q psy5642 101 IDKALLRPGRLDRLIYVPLPDD 122 (237)
Q Consensus 101 ld~al~r~gRf~~~i~~~~P~~ 122 (237)
++++++. ||- .|++++|+.
T Consensus 245 L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 245 IDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred cCHHHHh--hcE-EeeCCCCcH
Confidence 8999999 996 699999983
No 181
>KOG1051|consensus
Probab=96.17 E-value=0.03 Score=54.59 Aligned_cols=116 Identities=21% Similarity=0.181 Sum_probs=81.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
++.++.+..---..++.|+.+..++.+...+.. ....||+|||++-+.....+.+ ....++.|...+.
T Consensus 245 ~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-------~~d~~nlLkp~L~---- 313 (898)
T KOG1051|consen 245 KLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-------AIDAANLLKPLLA---- 313 (898)
T ss_pred ceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-------HHHHHHhhHHHHh----
Confidence 344444444345567889999999999999984 4567999999999987765411 1222333333332
Q ss_pred CCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC
Q psy5642 86 LNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS 136 (237)
Q Consensus 86 ~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~ 136 (237)
++.+.+||||..-. .-||++-+ ||+. +.++.|+.+.-..||+.+-..+
T Consensus 314 rg~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~~~~ 366 (898)
T KOG1051|consen 314 RGGLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLSERY 366 (898)
T ss_pred cCCeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhhhhh
Confidence 35599999998533 45999999 9986 8899999888777777666553
No 182
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.16 E-value=0.015 Score=45.43 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+.+.+... ..-|++||++|.+.. ...+.||..|++ ...++++|.+|++++.|.
T Consensus 84 i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEe--pp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 84 IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE---------------EAQNALLKTLEE--PPENTYFILITNNPSKIL 146 (162)
T ss_dssp HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHS--TTTTEEEEEEES-GGGS-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH---------------HHHHHHHHHhcC--CCCCEEEEEEECChHHCh
Confidence 46666666666543 355999999998833 457999999999 446899999999999999
Q ss_pred hhccCCCCcccEEEecCC
Q psy5642 103 KALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P 120 (237)
+.+++ |.- .+.|+.+
T Consensus 147 ~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 147 PTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp HHHHT--TSE-EEEE---
T ss_pred HHHHh--hce-EEecCCC
Confidence 99999 874 4666543
No 183
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.048 Score=45.39 Aligned_cols=92 Identities=13% Similarity=0.007 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 26 SERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 26 ~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+...+|.+-..+.. ...-|++|+++|.+.. ...+.||..|++ +..++++|.+|..++.+
T Consensus 70 ~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~---------------~AANALLKtLEE--PP~~t~fILit~~~~~L 132 (263)
T PRK06581 70 SIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNL---------------NAANSCLKILED--APKNSYIFLITSRAASI 132 (263)
T ss_pred cHHHHHHHHHHHhhCcccCCcEEEEEechHHhCH---------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhC
Confidence 35556665555543 2345999999999833 357899999999 55678888888999999
Q ss_pred chhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCC
Q psy5642 102 DKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSP 137 (237)
Q Consensus 102 d~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~ 137 (237)
.|.+++ |.. .+.++.|+...-.+++...+....
T Consensus 133 LpTIrS--RCq-~i~~~~p~~~~~~e~~~~~~~p~~ 165 (263)
T PRK06581 133 ISTIRS--RCF-KINVRSSILHAYNELYSQFIQPIA 165 (263)
T ss_pred chhHhh--ceE-EEeCCCCCHHHHHHHHHHhccccc
Confidence 999999 875 589999999888888777776543
No 184
>KOG2227|consensus
Probab=96.01 E-value=0.025 Score=50.99 Aligned_cols=111 Identities=21% Similarity=0.269 Sum_probs=77.8
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccC----CCCcccEEEe
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLR----PGRLDRLIYV 117 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r----~gRf~~~i~~ 117 (237)
+-+|++||+|.|+..+ +.++-.+- ++..+ ...++++||.+|..+.=|..|-| -+.--..+.|
T Consensus 257 ~~llVlDEmD~L~tr~------------~~vLy~lF-ewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F 322 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRS------------QTVLYTLF-EWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVF 322 (529)
T ss_pred eEEEEechhhHHhhcc------------cceeeeeh-hcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeee
Confidence 7799999999998432 12222222 22332 34689999999998877766654 1223578899
Q ss_pred cCCCHHHHHHHHHHHHcCCCCC--chhhHHHHHHHCCCCCcccccchhHHhh
Q psy5642 118 PLPDDLTRAAILKIRLARSPLG--EDVCVEELVRLTEGYSGAEQSLSKHRAK 167 (237)
Q Consensus 118 ~~P~~~~R~~il~~~l~~~~~~--~~~~~~~la~~t~g~s~~Dl~~~~~~a~ 167 (237)
++-+.+|..+||+..+...+.. ....+.-+|.+..|.|| |+..+.+.+.
T Consensus 323 ~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R 373 (529)
T KOG2227|consen 323 PPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCR 373 (529)
T ss_pred cCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHH
Confidence 9999999999999999876654 34567778888888776 6666555554
No 185
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.033 Score=47.76 Aligned_cols=82 Identities=16% Similarity=0.295 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-..+|.+...+... ..-|++||++|.+.. ...|.||+.|++ +..+.++|.+|++++.|-
T Consensus 86 idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lL 148 (290)
T PRK07276 86 TDTIRELVKNFSQSGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVL 148 (290)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCc
Confidence 45566655555432 335999999999833 347899999999 556789999999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHH
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAIL 129 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il 129 (237)
|.|++ |.. .|.|+. +.++-.+++
T Consensus 149 pTI~S--Rcq-~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 149 PTIKS--RTQ-IFHFPK-NEAYLIQLL 171 (290)
T ss_pred hHHHH--cce-eeeCCC-cHHHHHHHH
Confidence 99999 985 577865 444444444
No 186
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.022 Score=49.00 Aligned_cols=102 Identities=22% Similarity=0.258 Sum_probs=72.3
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
...++++.+++..+.- -....++.+-+..... ..-|++|||+|.+.. ...+.++..+..
T Consensus 73 ~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~---------------~A~nallk~lEe 135 (325)
T COG0470 73 HPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE---------------DAANALLKTLEE 135 (325)
T ss_pred CCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHhcc
Confidence 4578889998776542 2344455554444433 356999999999854 246778888887
Q ss_pred CCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHH
Q psy5642 83 IVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILK 130 (237)
Q Consensus 83 ~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~ 130 (237)
...+..+|.+||.++.+-+.|++ |.. .+.|+.|+...+.....
T Consensus 136 --p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 --PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred --CCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 44678899999999999999998 874 58888766655555544
No 187
>KOG2035|consensus
Probab=95.67 E-value=0.11 Score=44.20 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=87.3
Q ss_pred EEEecccccccccChHHHHHHHHHHHHHhcCC---------eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 11 VESIGPELFRKYVGESERCVRDVFKRARQVSP---------SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 11 i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P---------~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
+++.+|+-.. .-.--++++.....+.+| -+++|-|+|.|..+ ....|-..|+
T Consensus 92 lEitPSDaG~----~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d---------------AQ~aLRRTME 152 (351)
T KOG2035|consen 92 LEITPSDAGN----YDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD---------------AQHALRRTME 152 (351)
T ss_pred EEeChhhcCc----ccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH---------------HHHHHHHHHH
Confidence 5566665322 224556666666655443 28999999988443 2344555555
Q ss_pred CCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 82 GIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 82 ~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
.+. +++-+|..+|+.+.+=+++++ |. ..|.+|.|+.++...++...+.+..+. +...+..+|++++|--.+-
T Consensus 153 kYs--~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrA 225 (351)
T KOG2035|consen 153 KYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRA 225 (351)
T ss_pred HHh--cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHH
Confidence 543 466788889999999999998 64 359999999999999999999877766 6677788888876544443
No 188
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.47 E-value=0.33 Score=44.55 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=80.6
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC--------CCCCEEEEEEeCCCC---ccchhccCCCCc
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV--------PLNNVTIVAATNRPD---RIDKALLRPGRL 111 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vI~ttn~~~---~ld~al~r~gRf 111 (237)
.+||+|||..+. ..+.+.|+..|.+-. .-+..+++++||... ...+++.. ||
T Consensus 109 ~lLfLDEI~ras---------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RF 171 (498)
T PRK13531 109 EIVFLDEIWKAG---------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RM 171 (498)
T ss_pred cEEeecccccCC---------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hE
Confidence 399999996431 356788888884321 111234444446321 12248999 99
Q ss_pred ccEEEecCCC-HHHHHHHHHHHHc--CCCC-----CchhhHHHHHHHCCCCCccc--ccchhHHhhhhccccCCCCCCCC
Q psy5642 112 DRLIYVPLPD-DLTRAAILKIRLA--RSPL-----GEDVCVEELVRLTEGYSGAE--QSLSKHRAKKIRPRRESNPGPPA 181 (237)
Q Consensus 112 ~~~i~~~~P~-~~~R~~il~~~l~--~~~~-----~~~~~~~~la~~t~g~s~~D--l~~~~~~a~~~~~~~~~~~~~~~ 181 (237)
-..+.+++|+ .++-.++|..... ..+. -+..++..+-.......-.| ++.+++-...+...+. ....
T Consensus 172 liri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~---~~~~ 248 (498)
T PRK13531 172 LIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPN---APYV 248 (498)
T ss_pred EEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCC---CCCc
Confidence 8889999997 4565777765322 1111 12344444444444433333 2222222211111110 1124
Q ss_pred CchhHHHHHHHHHHHHHHhccccCCccHHHHH
Q psy5642 182 CKPSIVAVCDEAALSALENNLEAAYVSHQDFL 213 (237)
Q Consensus 182 ~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~ 213 (237)
++.+-..++.-+...|+-++ ...|+.+|+.
T Consensus 249 SpR~~~~l~~~akA~A~l~G--R~~V~p~Dv~ 278 (498)
T PRK13531 249 SDRRWKKAIRLLQASAFFSG--RDAIAPIDLI 278 (498)
T ss_pred CcHHHHHHHHHHHHHHHHCC--CCCCCHHHHH
Confidence 55557777777777777776 4457788888
No 189
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.44 E-value=0.33 Score=40.49 Aligned_cols=129 Identities=22% Similarity=0.208 Sum_probs=84.3
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhc-CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQV-SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
...+++|+..++.+ +-.+++..+.. ++-|||.||+- ... + .. --..|-..|++-..
T Consensus 113 glrLVEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS---Fe~---g----d~----~yK~LKs~LeG~ve 169 (287)
T COG2607 113 GLRLVEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLS---FEE---G----DD----AYKALKSALEGGVE 169 (287)
T ss_pred CCeEEEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCC---CCC---C----ch----HHHHHHHHhcCCcc
Confidence 45688888877754 45666666653 46799999851 111 1 11 12334444554322
Q ss_pred --CCCEEEEEEeCCCCccchhcc--------------------CCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCc-h-
Q psy5642 86 --LNNVTIVAATNRPDRIDKALL--------------------RPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGE-D- 141 (237)
Q Consensus 86 --~~~v~vI~ttn~~~~ld~al~--------------------r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~-~- 141 (237)
..+|++-||+|+-..|++.+. =+.||...+.|.+|+.++=..|+..+.+...++- +
T Consensus 170 ~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e 249 (287)
T COG2607 170 GRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDE 249 (287)
T ss_pred cCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 347999999999777663222 1238999999999999999999999998887762 3
Q ss_pred -hhHHHHHHHC--CCCCccc
Q psy5642 142 -VCVEELVRLT--EGYSGAE 158 (237)
Q Consensus 142 -~~~~~la~~t--~g~s~~D 158 (237)
.+.+.+.+.| .|-||+-
T Consensus 250 ~l~~eAl~WAt~rg~RSGR~ 269 (287)
T COG2607 250 ELHAEALQWATTRGGRSGRV 269 (287)
T ss_pred HHHHHHHHHHHhcCCCccHh
Confidence 3444454444 4566665
No 190
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=95.39 E-value=0.1 Score=42.08 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhc-CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchh
Q psy5642 26 SERCVRDVFKRARQV-SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKA 104 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~-~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~a 104 (237)
+...+|.+.+.+... ...-++|+++|.+. ....+.||..+++ +..++++|..|..+..+.|.
T Consensus 38 ~Vd~iReii~~~~~~~~~~k~iI~~a~~l~---------------~~A~NaLLK~LEE--Pp~~~~fiL~t~~~~~llpT 100 (206)
T PRK08485 38 KIEDAKEVIAEAYIAESEEKIIVIAAPSYG---------------IEAQNALLKILEE--PPKNICFIIVAKSKNLLLPT 100 (206)
T ss_pred CHHHHHHHHHHHhhCCCCcEEEEEchHhhC---------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCchH
Confidence 355666666666542 12344577887763 3457899999999 55678888888889999999
Q ss_pred ccCCCCccc------------EEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHC
Q psy5642 105 LLRPGRLDR------------LIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLT 151 (237)
Q Consensus 105 l~r~gRf~~------------~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t 151 (237)
+++ |... .+.+...+.++-.+.++. +.+.... .......++...
T Consensus 101 I~S--Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la 157 (206)
T PRK08485 101 IRS--RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLL 157 (206)
T ss_pred HHh--hheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHH
Confidence 998 8653 577888899999999988 4443332 333344444443
No 191
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.23 E-value=0.066 Score=42.26 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=56.4
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHH----HhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRA----RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a----~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
...+++.++++.+.. -++....+..++..+ ......||+|||||...+.... +.+.....+.+.||+.|+
T Consensus 31 ~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~~~~----~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 31 SERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPSNSG----GADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp SCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHTTTT----CSHHHHHHHHHHHHHHHH
T ss_pred CccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhhccccccc----cchhhHHHHHHHHHHHhc
Confidence 456899999998877 122233333333322 1112349999999999875111 123344677888888886
Q ss_pred CCC---------CCCCEEEEEEeCCCCccchh
Q psy5642 82 GIV---------PLNNVTIVAATNRPDRIDKA 104 (237)
Q Consensus 82 ~~~---------~~~~v~vI~ttn~~~~ld~a 104 (237)
+-. .-+++++|+|+|--......
T Consensus 105 ~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~ 136 (171)
T PF07724_consen 105 GGTLTDSYGRTVDTSNIIFIMTSNFGAEEIID 136 (171)
T ss_dssp HSEEEETTCCEEEGTTEEEEEEESSSTHHHHH
T ss_pred ccceecccceEEEeCCceEEEecccccchhhh
Confidence 321 12469999999976544333
No 192
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.21 E-value=0.068 Score=46.63 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 26 SERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+...+|.+.+.+... ..-|++||+++.+-. ...+.++..|+... .++.+|.+|++++.+
T Consensus 94 ~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~--~~~~~Ilvth~~~~l 156 (325)
T PRK08699 94 KIDAVREIIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPP--PQVVFLLVSHAADKV 156 (325)
T ss_pred CHHHHHHHHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhC
Confidence 466777777777642 344999999988832 34677888888753 346677799999999
Q ss_pred chhccCCCCcccEEEecCCCHHHHHHHHHH
Q psy5642 102 DKALLRPGRLDRLIYVPLPDDLTRAAILKI 131 (237)
Q Consensus 102 d~al~r~gRf~~~i~~~~P~~~~R~~il~~ 131 (237)
.+.+++ |.. .+.|+.|+.++..+.|..
T Consensus 157 l~ti~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 157 LPTIKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hHHHHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 999998 874 589999999988777754
No 193
>KOG0745|consensus
Probab=95.15 E-value=0.061 Score=48.28 Aligned_cols=110 Identities=23% Similarity=0.337 Sum_probs=71.5
Q ss_pred ceEEEEEeccccc-ccccC-hHHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh
Q psy5642 7 LTEVVESIGPELF-RKYVG-ESERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM 80 (237)
Q Consensus 7 ~~~~i~v~~s~l~-~~~~g-~~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 80 (237)
+.||...||..|. ..|+| +.+..|.+++..|.. .+..|+||||+|.+.....+.... -+....-+...||..+
T Consensus 251 dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~-RDVsGEGVQQaLLKll 329 (564)
T KOG0745|consen 251 DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTS-RDVSGEGVQQALLKLL 329 (564)
T ss_pred CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCcccccc-ccccchhHHHHHHHHh
Confidence 6799999998864 57888 568889999988753 367899999999998443332211 0111145667788877
Q ss_pred cCCC-----------CC--------CCEEEEEEeCCCCccchhccCCCCc-ccEEEecCC
Q psy5642 81 DGIV-----------PL--------NNVTIVAATNRPDRIDKALLRPGRL-DRLIYVPLP 120 (237)
Q Consensus 81 ~~~~-----------~~--------~~v~vI~ttn~~~~ld~al~r~gRf-~~~i~~~~P 120 (237)
++.. .+ .+|++|+.-.. ..||.-+-| |. |..+=|..|
T Consensus 330 EGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF-~~Ldk~I~r--R~~d~slGFg~~ 386 (564)
T KOG0745|consen 330 EGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAF-VGLDKIISR--RLDDKSLGFGAP 386 (564)
T ss_pred cccEEcccCCCCCCCCCCCeEEEeccceEEEecccc-cchHHHHHH--hhcchhcccCCC
Confidence 6531 11 23555544433 467777777 76 456667777
No 194
>KOG1942|consensus
Probab=95.14 E-value=0.34 Score=41.65 Aligned_cols=113 Identities=26% Similarity=0.408 Sum_probs=65.6
Q ss_pred ccccccChHHHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeC
Q psy5642 18 LFRKYVGESERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATN 96 (237)
Q Consensus 18 l~~~~~g~~~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 96 (237)
+..+..|+.-+.+.+..+.-.+ .-|.+|||||++-|- .+....|-..+.. +-.++ ||++||
T Consensus 272 ITdkLR~eiNkvVn~Yid~GvAElvPGVLFIDEVhMLD---------------iEcFTyL~kalES--~iaPi-vifAsN 333 (456)
T KOG1942|consen 272 ITDKLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLD---------------IECFTYLHKALES--PIAPI-VIFASN 333 (456)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhhcCcceEeeehhhhh---------------hHHHHHHHHHhcC--CCCce-EEEecC
Confidence 3444455555666666665543 469999999998771 1233333344544 22344 444444
Q ss_pred C-------------CCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHC
Q psy5642 97 R-------------PDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLT 151 (237)
Q Consensus 97 ~-------------~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t 151 (237)
+ |..+|+.++. |.= +|..-.-+.++-++|++.......+. .+..+.-++...
T Consensus 334 rG~~~irGt~d~~sPhGip~dllD--Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 334 RGMCTIRGTEDILSPHGIPPDLLD--RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIG 399 (456)
T ss_pred CcceeecCCcCCCCCCCCCHHHhh--hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhc
Confidence 2 4567778777 763 34333446677778888777655554 555666666544
No 195
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.07 E-value=0.023 Score=42.80 Aligned_cols=54 Identities=28% Similarity=0.453 Sum_probs=37.8
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCC------CEEEEEEeCCCC----
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLN------NVTIVAATNRPD---- 99 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~------~v~vI~ttn~~~---- 99 (237)
.+++++|||++..- ..+...|+..+++-. ... +..+|+|+|...
T Consensus 65 ~~~il~lDEin~a~---------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~ 129 (139)
T PF07728_consen 65 KGGILVLDEINRAP---------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRK 129 (139)
T ss_dssp EEEEEEESSCGG-----------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TT
T ss_pred ceeEEEECCcccCC---------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcC
Confidence 58899999998752 245666666665421 011 389999999998
Q ss_pred ccchhccCCCCc
Q psy5642 100 RIDKALLRPGRL 111 (237)
Q Consensus 100 ~ld~al~r~gRf 111 (237)
.+++++++ ||
T Consensus 130 ~l~~al~~--Rf 139 (139)
T PF07728_consen 130 ELSPALLD--RF 139 (139)
T ss_dssp TTCHHHHT--T-
T ss_pred cCCHHHHh--hC
Confidence 99999999 98
No 196
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=94.88 E-value=0.53 Score=44.37 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=48.5
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCC---CccchhccC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRP---DRIDKALLR 107 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~---~~ld~al~r 107 (237)
..|||+||+..+- ..+++.|++-|+.=. -..++++|||-|.. ..++++++.
T Consensus 94 ~GvL~lDe~n~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD 158 (584)
T PRK13406 94 GGVLVLAMAERLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD 158 (584)
T ss_pred CCEEEecCcccCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh
Confidence 3699999987762 467888888886521 11358889973322 358999999
Q ss_pred CCCcccEEEecCCCHHH
Q psy5642 108 PGRLDRLIYVPLPDDLT 124 (237)
Q Consensus 108 ~gRf~~~i~~~~P~~~~ 124 (237)
||+..|.++.|+..+
T Consensus 159 --Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 159 --RLAFHLDLDGLALRD 173 (584)
T ss_pred --heEEEEEcCCCChHH
Confidence 999999999987654
No 197
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.81 E-value=0.21 Score=42.88 Aligned_cols=74 Identities=16% Similarity=0.273 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-..++.+-..+... ..-|++|+++|.+.. ...+.||..|++ +..++++|..|++++.+.
T Consensus 77 idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~---------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll 139 (290)
T PRK05917 77 IETPRAIKKQIWIHPYESPYKIYIIHEADRMTL---------------DAISAFLKVLED--PPQHGVIILTSAKPQRLP 139 (290)
T ss_pred HHHHHHHHHHHhhCccCCCceEEEEechhhcCH---------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCc
Confidence 44455555554432 235999999999843 347899999999 556889999999999999
Q ss_pred hhccCCCCcccEEEecCC
Q psy5642 103 KALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P 120 (237)
|.+++ |.. .+.|+.+
T Consensus 140 ~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 140 PTIRS--RSL-SIHIPME 154 (290)
T ss_pred HHHHh--cce-EEEccch
Confidence 99999 875 4667654
No 198
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.71 E-value=1.1 Score=37.61 Aligned_cols=140 Identities=19% Similarity=0.167 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc-cc--
Q psy5642 27 ERCVRDVFKRARQV-SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR-ID-- 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~-~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~-ld-- 102 (237)
++.-+.+....++. .|-++++||++.+..+- -+.+.-|.+.-.+....-+|+.||=..--.. .-
T Consensus 116 e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~------------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~ 183 (269)
T COG3267 116 EQIDRELAALVKKGKRPVVLMVDEAHDLNDSA------------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPV 183 (269)
T ss_pred HHHHHHHHHHHHhCCCCeEEeehhHhhhChhH------------HHHHHHHHhhcccccCceeeeecCCcccchhhchHH
Confidence 33444444444443 56899999999985431 1223333333233222223666654321110 11
Q ss_pred -hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCC----CchhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCC
Q psy5642 103 -KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPL----GEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNP 177 (237)
Q Consensus 103 -~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~----~~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~ 177 (237)
..+.. |++..|++++.+.++-...+++.++.-.. .++..+..+...+.| .|+-
T Consensus 184 l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~l------------------- 241 (269)
T COG3267 184 LRELEQ--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRL------------------- 241 (269)
T ss_pred HHhhhh--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHH-------------------
Confidence 23334 77777888999999999999999876533 367778888888888 5666
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhccccCCccHH
Q psy5642 178 GPPACKPSIVAVCDEAALSALENNLEAAYVSHQ 210 (237)
Q Consensus 178 ~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~ 210 (237)
|.++|..|...++..+ +..|+..
T Consensus 242 --------in~~~~~Al~~a~~a~--~~~v~~a 264 (269)
T COG3267 242 --------INNLATLALDAAYSAG--EDGVSEA 264 (269)
T ss_pred --------HHHHHHHHHHHHHHcC--CCccchh
Confidence 8888998888888776 3345444
No 199
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=94.68 E-value=0.5 Score=43.74 Aligned_cols=65 Identities=26% Similarity=0.348 Sum_probs=45.6
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCC-----C------
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRP-----D------ 99 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~-----~------ 99 (237)
..+|||||++.+- ..+...|++.|+.-. ...++.+|+++|.- .
T Consensus 296 ~GvLfLDEi~e~~---------------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c 360 (499)
T TIGR00368 296 NGVLFLDELPEFK---------------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHC 360 (499)
T ss_pred CCeEecCChhhCC---------------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccc
Confidence 4799999998762 234555555554321 12368899999852 1
Q ss_pred ------------ccchhccCCCCcccEEEecCCCHH
Q psy5642 100 ------------RIDKALLRPGRLDRLIYVPLPDDL 123 (237)
Q Consensus 100 ------------~ld~al~r~gRf~~~i~~~~P~~~ 123 (237)
.+...|+. |||..+.++.++..
T Consensus 361 ~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 361 RCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred cCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 58889999 99999999987543
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.21 Score=48.27 Aligned_cols=105 Identities=21% Similarity=0.269 Sum_probs=71.8
Q ss_pred HHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC--C-C------CCEEEEEEeCCCC--------
Q psy5642 37 ARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV--P-L------NNVTIVAATNRPD-------- 99 (237)
Q Consensus 37 a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~-~------~~v~vI~ttn~~~-------- 99 (237)
.+....|||+|||||.-- ..+.+.||+.||.=. . . .+.++|+|||-=.
T Consensus 589 VRr~PySViLlDEIEKAH---------------pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~ 653 (786)
T COG0542 589 VRRKPYSVILLDEIEKAH---------------PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDAD 653 (786)
T ss_pred hhcCCCeEEEechhhhcC---------------HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhcc
Confidence 344456899999998752 357899999997522 1 1 2589999998532
Q ss_pred --------------------ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC-------CCC---chhhHHHHHH
Q psy5642 100 --------------------RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS-------PLG---EDVCVEELVR 149 (237)
Q Consensus 100 --------------------~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~-------~~~---~~~~~~~la~ 149 (237)
...|+++. |+|.+|.|.+.+.+.-.+|+..++... .+. ++.....|+.
T Consensus 654 ~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~ 731 (786)
T COG0542 654 GDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAE 731 (786)
T ss_pred ccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHH
Confidence 12467777 999999999999999999998777532 221 4445556666
Q ss_pred HCC--CCCccc
Q psy5642 150 LTE--GYSGAE 158 (237)
Q Consensus 150 ~t~--g~s~~D 158 (237)
+.- .|.++-
T Consensus 732 ~gyd~~~GARp 742 (786)
T COG0542 732 KGYDPEYGARP 742 (786)
T ss_pred hccCCCcCchH
Confidence 552 344444
No 201
>PRK09862 putative ATP-dependent protease; Provisional
Probab=94.54 E-value=0.77 Score=42.54 Aligned_cols=65 Identities=28% Similarity=0.416 Sum_probs=46.9
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCCC-----------
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRPD----------- 99 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~----------- 99 (237)
..+|||||++.+- ..+...|++.|+.-. ...++.+|+|+|...
T Consensus 295 gGvLfLDEi~e~~---------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c 359 (506)
T PRK09862 295 NGVLFLDELPEFE---------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRC 359 (506)
T ss_pred CCEEecCCchhCC---------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCc
Confidence 3699999997751 345666666663321 123589999999742
Q ss_pred ----------ccchhccCCCCcccEEEecCCCHH
Q psy5642 100 ----------RIDKALLRPGRLDRLIYVPLPDDL 123 (237)
Q Consensus 100 ----------~ld~al~r~gRf~~~i~~~~P~~~ 123 (237)
.++..++. |||..+.++.|+..
T Consensus 360 ~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 360 TPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 47789999 99999999999754
No 202
>PF05729 NACHT: NACHT domain
Probab=94.39 E-value=0.33 Score=36.94 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=49.0
Q ss_pred HhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC--CCccchhccCCCCcccEE
Q psy5642 38 RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR--PDRIDKALLRPGRLDRLI 115 (237)
Q Consensus 38 ~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~--~~~ld~al~r~gRf~~~i 115 (237)
....+.+|+||.+|.+....... ........+...+.... ..++-+|.|++. ...+...+.. ...+
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~-------~~~~~~~~l~~l~~~~~-~~~~~liit~r~~~~~~~~~~~~~----~~~~ 145 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQ-------ERQRLLDLLSQLLPQAL-PPGVKLIITSRPRAFPDLRRRLKQ----AQIL 145 (166)
T ss_pred HcCCceEEEEechHhcccchhhh-------HHHHHHHHHHHHhhhcc-CCCCeEEEEEcCChHHHHHHhcCC----CcEE
Confidence 34567899999999997643220 01222333334444311 123334444432 2123333332 1578
Q ss_pred EecCCCHHHHHHHHHHHHcC
Q psy5642 116 YVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 116 ~~~~P~~~~R~~il~~~l~~ 135 (237)
.+...+.+++.++++.+++.
T Consensus 146 ~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 146 ELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EECCCCHHHHHHHHHHHhhc
Confidence 99999999999999998864
No 203
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.31 E-value=0.15 Score=44.97 Aligned_cols=89 Identities=27% Similarity=0.399 Sum_probs=51.4
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeC------------CCCccchhccCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATN------------RPDRIDKALLRP 108 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn------------~~~~ld~al~r~ 108 (237)
-|.||||||++-|-- +..+.|-..|+. .-.++ ||.+|| .|..||..++.
T Consensus 278 vpGVLFIDEvHmLDi---------------EcFsfLnralEs--~~sPi-iIlATNRg~~~irGt~~~sphGiP~DlLD- 338 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDI---------------ECFSFLNRALES--ELSPI-IILATNRGITKIRGTDIISPHGIPLDLLD- 338 (398)
T ss_dssp EE-EEEEESGGGSBH---------------HHHHHHHHHHTS--TT--E-EEEEES-SEEE-BTTS-EEETT--HHHHT-
T ss_pred ecceEEecchhhccH---------------HHHHHHHHHhcC--CCCcE-EEEecCceeeeccCccCcCCCCCCcchHh-
Confidence 399999999998822 223333334544 22345 555555 46678888888
Q ss_pred CCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHH
Q psy5642 109 GRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRL 150 (237)
Q Consensus 109 gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~ 150 (237)
|+ .+|...+.+.++-.+|++.......+. .+..+..|+..
T Consensus 339 -Rl-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~i 379 (398)
T PF06068_consen 339 -RL-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKI 379 (398)
T ss_dssp -TE-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHH
T ss_pred -hc-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHH
Confidence 87 468888889999999999988766655 44445544443
No 204
>KOG2228|consensus
Probab=93.83 E-value=0.37 Score=42.08 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=65.4
Q ss_pred cccChHHHHHHHHHHHHHhc-----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEe
Q psy5642 21 KYVGESERCVRDVFKRARQV-----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAAT 95 (237)
Q Consensus 21 ~~~g~~~~~l~~~f~~a~~~-----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 95 (237)
+..|....++.+++...+.. .|.|.++||+|.+++... +.++-.+.+.-+. .+.+|.|||.|
T Consensus 112 k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r-----------QtllYnlfDisqs--~r~Piciig~T 178 (408)
T KOG2228|consen 112 KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR-----------QTLLYNLFDISQS--ARAPICIIGVT 178 (408)
T ss_pred eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh-----------hHHHHHHHHHHhh--cCCCeEEEEee
Confidence 44555666777777666542 355777889999976420 2233333333332 24589999999
Q ss_pred CCCC---ccchhccCCCCcccE-EEecCC-CHHHHHHHHHHHHc
Q psy5642 96 NRPD---RIDKALLRPGRLDRL-IYVPLP-DDLTRAAILKIRLA 134 (237)
Q Consensus 96 n~~~---~ld~al~r~gRf~~~-i~~~~P-~~~~R~~il~~~l~ 134 (237)
.+.+ .+...+.+ ||.+. |+++.| ..++-..+++..+.
T Consensus 179 trld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 179 TRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 8866 55678888 99766 666655 67888889988873
No 205
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.70 E-value=0.13 Score=41.18 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=43.0
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
..++|+|||+..+++.+...... ....++.+.... ..+.-+|.+|-++..+|+.+++ +.+..+.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~---------~~~~~~~l~~hR-h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKK---------VPEIIEFLAQHR-HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T-------------HHHHGGGGCC-CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCcccccc---------chHHHHHHHHhC-cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 57899999999999887663210 123345554432 2467899999999999999998 99888887655
No 206
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=93.61 E-value=2 Score=35.10 Aligned_cols=150 Identities=14% Similarity=0.151 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccC
Q psy5642 28 RCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLR 107 (237)
Q Consensus 28 ~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r 107 (237)
.++.++-......+|.+|++|.- +++.++ -.||.++.+......|+||-+++..+-+-.+++-
T Consensus 33 ~~~~ea~~~i~~~~pDLILLDiY---mPd~~G--------------i~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~ 95 (224)
T COG4565 33 GTLEEAKMIIEEFKPDLILLDIY---MPDGNG--------------IELLPELRSQHYPVDVIVITAASDMETIKEALRY 95 (224)
T ss_pred ccHHHHHHHHHhhCCCEEEEeec---cCCCcc--------------HHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhc
Confidence 34455555666778999999873 444322 3577777776555689999999999999999986
Q ss_pred CCCcccEE-EecCCCHHHHHHHHHHHHcCCCCC---chhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCCCCCCc
Q psy5642 108 PGRLDRLI-YVPLPDDLTRAAILKIRLARSPLG---EDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACK 183 (237)
Q Consensus 108 ~gRf~~~i-~~~~P~~~~R~~il~~~l~~~~~~---~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~ 183 (237)
|-||..| .|...-.+++..=++.+-..+... +...++++-. +.+..+ .....+
T Consensus 96 -Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~~~~~~sQ~~lD~l~~---~~~k~~-------------------~~~~LP 152 (224)
T COG4565 96 -GVVDYLIKPFTFERLQQALTRYRQKRHALESHQQLSQKELDQLFN---IQSKEQ-------------------PPDDLP 152 (224)
T ss_pred -CchhheecceeHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHh---cccccc-------------------CcccCC
Confidence 8898766 233333333333333222211111 2223333322 222211 112223
Q ss_pred hhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhc
Q psy5642 184 PSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLV 219 (237)
Q Consensus 184 ~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~ 219 (237)
.||....-......+.. ...+.|.+++-+++..-
T Consensus 153 kGi~~~Tl~~i~~~~~~--~~~~~Taeela~~~giS 186 (224)
T COG4565 153 KGLDELTLQKVREALKE--PDQELTAEELAQALGIS 186 (224)
T ss_pred CCcCHHHHHHHHHHHhC--cCCccCHHHHHHHhCcc
Confidence 34666555555555552 24567888888776643
No 207
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=93.02 E-value=0.2 Score=40.51 Aligned_cols=66 Identities=12% Similarity=0.246 Sum_probs=37.8
Q ss_pred ccChHHHHHHHHHHHHHhcCC--eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC
Q psy5642 22 YVGESERCVRDVFKRARQVSP--SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD 99 (237)
Q Consensus 22 ~~g~~~~~l~~~f~~a~~~~P--~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 99 (237)
..|.+.+.+-.++.......+ .+|+|||.|.-+.. . ....++..+..... .++-||.||++|.
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp----------~----~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHP----------S----WQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSH----------H----HHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCH----------H----HHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 347777777555555554433 89999999986653 2 23333344433322 4677899999987
Q ss_pred ccc
Q psy5642 100 RID 102 (237)
Q Consensus 100 ~ld 102 (237)
-||
T Consensus 301 ild 303 (303)
T PF13304_consen 301 ILD 303 (303)
T ss_dssp G--
T ss_pred hcC
Confidence 554
No 208
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=92.82 E-value=0.14 Score=46.27 Aligned_cols=69 Identities=26% Similarity=0.364 Sum_probs=38.1
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----C----CCCEEEEEEeCCC-------Cccchh
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----P----LNNVTIVAATNRP-------DRIDKA 104 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~----~~~v~vI~ttn~~-------~~ld~a 104 (237)
...+|||||+|.+-. .+...|+..++.-. . ..++-+|+||+.. ..+.+.
T Consensus 233 ~~gtl~l~~i~~l~~---------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~ 297 (445)
T TIGR02915 233 HGGTLFLDEIGDLPL---------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFRED 297 (445)
T ss_pred CCCEEEEechhhCCH---------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHH
Confidence 357999999999832 23445555554311 0 1247788888753 123333
Q ss_pred ccCCCCcccEEEecCCCHHHHHH
Q psy5642 105 LLRPGRLDRLIYVPLPDDLTRAA 127 (237)
Q Consensus 105 l~r~gRf~~~i~~~~P~~~~R~~ 127 (237)
+.. |+. .+.+..|...+|.+
T Consensus 298 L~~--~l~-~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 298 LFY--RIA-EISITIPPLRSRDG 317 (445)
T ss_pred HHH--Hhc-cceecCCCchhchh
Confidence 333 432 25566666666654
No 209
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.79 E-value=0.31 Score=42.05 Aligned_cols=84 Identities=12% Similarity=0.227 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhc-----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 28 RCVRDVFKRARQV-----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 28 ~~l~~~f~~a~~~-----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
..++.+.+..... ..-|++||++|.+. ....+.|+..|++ +...+++|.+|+.++.+-
T Consensus 72 d~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~---------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll 134 (299)
T PRK07132 72 SEFLSAINKLYFSSFVQSQKKILIIKNIEKTS---------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVL 134 (299)
T ss_pred HHHHHHHHHhccCCcccCCceEEEEecccccC---------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhCh
Confidence 4555555555322 34599999987662 2356889999999 445677777777889999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHH
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKI 131 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~ 131 (237)
+.+++ |.. .+++++|+.++-.+.|..
T Consensus 135 ~TI~S--Rc~-~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 135 PTIVS--RCQ-VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred HHHHh--CeE-EEECCCCCHHHHHHHHHH
Confidence 99998 764 699999998887776654
No 210
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.74 E-value=0.54 Score=44.78 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=55.1
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHH------------HhcCCeEEEEccccccccccCCCCCCCCCchHHHH
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRA------------RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERV 72 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a------------~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 72 (237)
.+..||+.|+|..+-. +..-..+|... ......+|||||++.+-. .+
T Consensus 374 r~~~pfv~vnc~~~~~------~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~---------------~~ 432 (638)
T PRK11388 374 RAAGPYIAVNCQLYPD------EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP---------------EL 432 (638)
T ss_pred ccCCCeEEEECCCCCh------HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH---------------HH
Confidence 3567999999986631 11112233211 012357999999999832 23
Q ss_pred HHHHHHHhcCCC--C-C------CCEEEEEEeCCCCccchhccCCCCccc-------EEEecCCCHHHHH----HHHHHH
Q psy5642 73 LAQMLTEMDGIV--P-L------NNVTIVAATNRPDRIDKALLRPGRLDR-------LIYVPLPDDLTRA----AILKIR 132 (237)
Q Consensus 73 ~~~ll~~l~~~~--~-~------~~v~vI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~R~----~il~~~ 132 (237)
...|+..++.-. . . -++-+|+||+.. +. .+...|+|.. .+.+..|..-+|. .++..+
T Consensus 433 Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~--l~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~ 509 (638)
T PRK11388 433 QSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD--LA-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNK 509 (638)
T ss_pred HHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC--HH-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHH
Confidence 344555554311 0 0 146788888853 22 2222345521 3556666665553 344455
Q ss_pred Hc
Q psy5642 133 LA 134 (237)
Q Consensus 133 l~ 134 (237)
+.
T Consensus 510 l~ 511 (638)
T PRK11388 510 LR 511 (638)
T ss_pred HH
Confidence 54
No 211
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.68 E-value=0.54 Score=43.81 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=55.0
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHH---------------HhcCCeEEEEccccccccccCCCCCCCCCchHH
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRA---------------RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQE 70 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a---------------~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~ 70 (237)
.+.||+.|+|..+-... .-..+|... ......+|||||+|.+-.
T Consensus 246 ~~~pfv~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~--------------- 304 (534)
T TIGR01817 246 AKRPFVKVNCAALSETL------LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP--------------- 304 (534)
T ss_pred CCCCeEEeecCCCCHHH------HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH---------------
Confidence 56799999998763211 111122111 112357999999999832
Q ss_pred HHHHHHHHHhcCCC--C-------CCCEEEEEEeCCCCccchhccCCCCcc---------cEEEecCCC--HHHHHHHHH
Q psy5642 71 RVLAQMLTEMDGIV--P-------LNNVTIVAATNRPDRIDKALLRPGRLD---------RLIYVPLPD--DLTRAAILK 130 (237)
Q Consensus 71 ~~~~~ll~~l~~~~--~-------~~~v~vI~ttn~~~~ld~al~r~gRf~---------~~i~~~~P~--~~~R~~il~ 130 (237)
.+...|+..++.-. . ..++-+|+||+.. +...+ ..|+|. ..|.+|+.. .++...|++
T Consensus 305 ~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~--l~~~~-~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~ 381 (534)
T TIGR01817 305 AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD--LEEAV-AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAE 381 (534)
T ss_pred HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC--HHHHH-HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHH
Confidence 23455555554321 0 1147788888743 22222 234552 345555443 244556666
Q ss_pred HHHc
Q psy5642 131 IRLA 134 (237)
Q Consensus 131 ~~l~ 134 (237)
+++.
T Consensus 382 ~~l~ 385 (534)
T TIGR01817 382 AFLE 385 (534)
T ss_pred HHHH
Confidence 6664
No 212
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=92.64 E-value=0.1 Score=47.13 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=55.7
Q ss_pred CCceEEEEEecccccccccChHHHHHHH-HHHHH---------------HhcCCeEEEEccccccccccCCCCCCCCCch
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRD-VFKRA---------------RQVSPSVIFFDELDSLAGERGDGGGGGGSNV 68 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~-~f~~a---------------~~~~P~il~iDeid~l~~~~~~~~~~~~~~~ 68 (237)
....||+.++|+.+.. ..+.. +|... ....+++|||||+|.+...
T Consensus 188 ~~~~~~i~~~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~------------ 248 (441)
T PRK10365 188 RSEKPLVTLNCAALNE-------SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM------------ 248 (441)
T ss_pred CCCCCeeeeeCCCCCH-------HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH------------
Confidence 3567999999987642 12211 22211 1224679999999998432
Q ss_pred HHHHHHHHHHHhcCCC-----C----CCCEEEEEEeCCCCccchhccCCCCccc-------EEEecCCCHHHHH----HH
Q psy5642 69 QERVLAQMLTEMDGIV-----P----LNNVTIVAATNRPDRIDKALLRPGRLDR-------LIYVPLPDDLTRA----AI 128 (237)
Q Consensus 69 ~~~~~~~ll~~l~~~~-----~----~~~v~vI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~R~----~i 128 (237)
+...++..++.-. . ..++.+|+||+.+- . ....+|+|.. .+.+..|..-+|. .+
T Consensus 249 ---~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~--~-~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l 322 (441)
T PRK10365 249 ---MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL--A-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLL 322 (441)
T ss_pred ---HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhcchhHHHH
Confidence 2344555554321 0 11466787776522 2 2233456642 3556666655553 34
Q ss_pred HHHHHc
Q psy5642 129 LKIRLA 134 (237)
Q Consensus 129 l~~~l~ 134 (237)
++.++.
T Consensus 323 ~~~~l~ 328 (441)
T PRK10365 323 AGHFLQ 328 (441)
T ss_pred HHHHHH
Confidence 555554
No 213
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=92.63 E-value=0.17 Score=45.96 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=54.7
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHH---------------HHhcCCeEEEEccccccccccCCCCCCCCCchHH
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKR---------------ARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQE 70 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~---------------a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~ 70 (237)
.+.+|+.++|..+-..+. -..+|.. ......++|||||+|.+-..
T Consensus 184 ~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-------------- 243 (463)
T TIGR01818 184 ANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-------------- 243 (463)
T ss_pred CCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH--------------
Confidence 567999999987632111 1111110 11123678999999998332
Q ss_pred HHHHHHHHHhcCCC---------CCCCEEEEEEeCCCC-------ccchhccCCCCcc-cEEEecCCC--HHHHHHHHHH
Q psy5642 71 RVLAQMLTEMDGIV---------PLNNVTIVAATNRPD-------RIDKALLRPGRLD-RLIYVPLPD--DLTRAAILKI 131 (237)
Q Consensus 71 ~~~~~ll~~l~~~~---------~~~~v~vI~ttn~~~-------~ld~al~r~gRf~-~~i~~~~P~--~~~R~~il~~ 131 (237)
+...|+..++.-. ...++-+|+||+..- .+.+.+.. |+. ..|++|+.. .++...++..
T Consensus 244 -~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~ 320 (463)
T TIGR01818 244 -AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARH 320 (463)
T ss_pred -HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHH
Confidence 2344555544311 012467788876431 22233333 332 355555544 4556666666
Q ss_pred HHc
Q psy5642 132 RLA 134 (237)
Q Consensus 132 ~l~ 134 (237)
++.
T Consensus 321 ~l~ 323 (463)
T TIGR01818 321 FLA 323 (463)
T ss_pred HHH
Confidence 654
No 214
>PF12846 AAA_10: AAA-like domain
Probab=92.56 E-value=0.49 Score=39.83 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=67.8
Q ss_pred ceEEEEEecccccccccChH----HHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHH
Q psy5642 7 LTEVVESIGPELFRKYVGES----ERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLT 78 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~----~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~ 78 (237)
+..++.++.+.+...-.... -..+..++..+.. ..|.++++||++.+...... ...+..++.
T Consensus 178 ~~~~iv~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEa~~~~~~~~~----------~~~~~~~~~ 247 (304)
T PF12846_consen 178 DGRIIVFDLSGLSDSAQKVFRAVLLLLLSWIYRRIRARSNRGRPKIIVIDEAHNFLSNPSG----------AEFLDELLR 247 (304)
T ss_pred cCCeeEEecccccccchhhHHHHHHHHHHHHHHhhcccccCCceEEEEeCCccccccccch----------hhhhhHHHH
Confidence 34566666666655511111 2222223333333 46899999999998776311 223444444
Q ss_pred HhcCCCCCCCEEEEEEeCCCCccc-----hhccCCCCcccEEEecCCCHHHHHHHHHHHH
Q psy5642 79 EMDGIVPLNNVTIVAATNRPDRID-----KALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133 (237)
Q Consensus 79 ~l~~~~~~~~v~vI~ttn~~~~ld-----~al~r~gRf~~~i~~~~P~~~~R~~il~~~l 133 (237)
.... .++.++.+|..|.+++ ++++. -....|.++.++.+.+. +..++
T Consensus 248 ~~Rk----~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~i~~~~~~~~~~~--l~~~~ 299 (304)
T PF12846_consen 248 EGRK----YGVGLILATQSPSDLPKSPIEDAILA--NCNTKIIFRLEDSDDAE--LAELF 299 (304)
T ss_pred HHHh----cCCEEEEeeCCHHHHhccchHHHHHH--hCCcEEEecCChHHHHH--HHHHc
Confidence 4443 4678888899999999 78888 78888888888877666 44443
No 215
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=92.31 E-value=0.65 Score=39.15 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=49.0
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
.-|++|+++|.+.. ...+.||..+++ +..++++|.+|+.++.+.+.+++ |-.. +.++.+
T Consensus 89 ~KV~II~~ae~m~~---------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq~-~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLNK---------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCVQ-YVVLSK 147 (261)
T ss_pred CEEEEeccHhhhCH---------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--heee-eecCCh
Confidence 46999999998833 457999999999 55789999999999999999999 8643 666666
No 216
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=92.18 E-value=1.2 Score=38.35 Aligned_cols=80 Identities=20% Similarity=0.313 Sum_probs=51.6
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCC---------C-
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRP---------G- 109 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~---------g- 109 (237)
..|-||+|||+|.+-+. -+..++..+..+-...++++|.+.+. +.+-.++... |
T Consensus 171 ~~~iViiIDdLDR~~~~---------------~i~~~l~~ik~~~~~~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~ 234 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPE---------------EIVELLEAIKLLLDFPNIIFILAFDP-EILEKAIEKNYGEGFDEIDGR 234 (325)
T ss_pred CceEEEEEcchhcCCcH---------------HHHHHHHHHHHhcCCCCeEEEEEecH-HHHHHHHHhhcCcccccccHH
Confidence 45789999999998332 13444444444444467777777653 4333333320 0
Q ss_pred -----CcccEEEecCCCHHHHHHHHHHHHcC
Q psy5642 110 -----RLDRLIYVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 110 -----Rf~~~i~~~~P~~~~R~~il~~~l~~ 135 (237)
.|+..+.+|.|+..+...++...+..
T Consensus 235 ~yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 235 EYLEKIIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHHhhcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 36788899999999988888877543
No 217
>KOG1969|consensus
Probab=92.03 E-value=3.8 Score=39.51 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=75.7
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHh--------cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHH
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQ--------VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQM 76 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~--------~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~l 76 (237)
.++-.+++|++|+=-+ ...+++-...|.. .+|.+|+|||||--. .....++..+
T Consensus 349 qaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------~~~Vdvilsl 410 (877)
T KOG1969|consen 349 QAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------RAAVDVILSL 410 (877)
T ss_pred hcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc------------HHHHHHHHHH
Confidence 3566788999987653 4445554444443 369999999998531 1112223233
Q ss_pred HHH----hcCCCC---------CC---CEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-
Q psy5642 77 LTE----MDGIVP---------LN---NVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG- 139 (237)
Q Consensus 77 l~~----l~~~~~---------~~---~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~- 139 (237)
+.. ..+... .. ..-||+.+|+ ..-|+|+.-.-|..+|+|..|...--.+=|+....+....
T Consensus 411 v~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~ 488 (877)
T KOG1969|consen 411 VKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRA 488 (877)
T ss_pred HHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCC
Confidence 321 111100 00 1467888885 4458888544699999999998887777777666554443
Q ss_pred chhhHHHHHHHCC
Q psy5642 140 EDVCVEELVRLTE 152 (237)
Q Consensus 140 ~~~~~~~la~~t~ 152 (237)
....+..|++.|+
T Consensus 489 d~~aL~~L~el~~ 501 (877)
T KOG1969|consen 489 DSKALNALCELTQ 501 (877)
T ss_pred CHHHHHHHHHHhc
Confidence 3344555555544
No 218
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.83 E-value=0.53 Score=41.14 Aligned_cols=108 Identities=22% Similarity=0.213 Sum_probs=55.4
Q ss_pred CceEEEEEeccccccccc-----ChHH-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHH
Q psy5642 6 GLTEVVESIGPELFRKYV-----GESE-------RCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVL 73 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~-----g~~~-------~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 73 (237)
...||+.|+|..+-.... |... ..-.-.|..| ...+|||||+|.+-. .+.
T Consensus 49 ~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~---------------~~Q 110 (329)
T TIGR02974 49 WQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL---------------LVQ 110 (329)
T ss_pred cCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEeCChHhCCH---------------HHH
Confidence 567999999986532110 0000 0000112222 357999999999832 234
Q ss_pred HHHHHHhcCCC---------CCCCEEEEEEeCCC-------CccchhccCCCCcccEEEecCCCHH----HHHHHHHHHH
Q psy5642 74 AQMLTEMDGIV---------PLNNVTIVAATNRP-------DRIDKALLRPGRLDRLIYVPLPDDL----TRAAILKIRL 133 (237)
Q Consensus 74 ~~ll~~l~~~~---------~~~~v~vI~ttn~~-------~~ld~al~r~gRf~~~i~~~~P~~~----~R~~il~~~l 133 (237)
..|+..|+.-. ...++-+|++|+.. ..+.+.|.. ||. .+.+..|..- +...++++++
T Consensus 111 ~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl 187 (329)
T TIGR02974 111 EKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFA 187 (329)
T ss_pred HHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHH
Confidence 45555554321 11347888888753 133455555 553 2344445444 4444555555
Q ss_pred c
Q psy5642 134 A 134 (237)
Q Consensus 134 ~ 134 (237)
.
T Consensus 188 ~ 188 (329)
T TIGR02974 188 I 188 (329)
T ss_pred H
Confidence 4
No 219
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=2.8 Score=40.02 Aligned_cols=112 Identities=20% Similarity=0.245 Sum_probs=67.4
Q ss_pred EEEEEEeCCC-----CccchhccCCCCcccEEEec--CC-CHHHHHHHHHHHHcCC------CCCchhhHHHHHHHCCCC
Q psy5642 89 VTIVAATNRP-----DRIDKALLRPGRLDRLIYVP--LP-DDLTRAAILKIRLARS------PLGEDVCVEELVRLTEGY 154 (237)
Q Consensus 89 v~vI~ttn~~-----~~ld~al~r~gRf~~~i~~~--~P-~~~~R~~il~~~l~~~------~~~~~~~~~~la~~t~g~ 154 (237)
..+|+..|.- ..+++.++. -|....++. +| +.+.|..+|..+.+.. +.-....+..|......+
T Consensus 277 ~klI~~Gn~~~l~~l~~~~~~r~~--g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~ 354 (647)
T COG1067 277 LKLILAGNREDLEDLHEPDRSRIE--GFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARR 354 (647)
T ss_pred eEEEeeCCHHHHHhhcccCHHHHh--hcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 5566665542 244566665 566555555 56 7789999998777532 221333444444333333
Q ss_pred CcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCC
Q psy5642 155 SGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPR 222 (237)
Q Consensus 155 s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~ 222 (237)
++.. ..-..|+.-|.++++.|..-+..++ ...++.+|+..|++..++.
T Consensus 355 Ag~~------------------~~Ltl~~rdl~~lv~~A~~ia~~~~--~~~I~ae~Ve~a~~~~~~~ 402 (647)
T COG1067 355 AGDQ------------------NKLTLRLRDLGNLVREAGDIAVSEG--RKLITAEDVEEALQKRELR 402 (647)
T ss_pred cccc------------------ceeccCHHHHHHHHHHhhHHHhcCC--cccCcHHHHHHHHHhhhhH
Confidence 3211 1111222228899998888887765 4579999999999997764
No 220
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.69 E-value=1.3 Score=37.25 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhcc
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALL 106 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~ 106 (237)
......+.+. -...+++|+||+++... ....+...+.. ...+.-||.||+... +-..+.
T Consensus 88 ~~~~~~l~~~-L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~--~~~~~kilvTTR~~~-v~~~~~ 146 (287)
T PF00931_consen 88 EELQDQLREL-LKDKRCLLVLDDVWDEE-----------------DLEELREPLPS--FSSGSKILVTTRDRS-VAGSLG 146 (287)
T ss_dssp HHHHHHHHHH-HCCTSEEEEEEEE-SHH-----------------HH-------HC--HHSS-EEEEEESCGG-GGTTHH
T ss_pred ccccccchhh-hccccceeeeeeecccc-----------------ccccccccccc--ccccccccccccccc-cccccc
Confidence 3334444443 33459999999987642 12222222211 112456777887642 222222
Q ss_pred CCCCcccEEEecCCCHHHHHHHHHHHHcCCC----CCchhhHHHHHHHCCCC
Q psy5642 107 RPGRLDRLIYVPLPDDLTRAAILKIRLARSP----LGEDVCVEELVRLTEGY 154 (237)
Q Consensus 107 r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~----~~~~~~~~~la~~t~g~ 154 (237)
. -...++++..+.++-.++|........ ........+++..+.|+
T Consensus 147 ~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 147 G---TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp S---CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred c---cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 156899999999999999998876543 11234567888888654
No 221
>PRK15115 response regulator GlrR; Provisional
Probab=91.58 E-value=0.41 Score=43.29 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=57.2
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHH---------------HhcCCeEEEEccccccccccCCCCCCCCCchHH
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRA---------------RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQE 70 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a---------------~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~ 70 (237)
.+.+|+.++|..+-.. ..-..+|..+ ......+|||||+|.|-..
T Consensus 184 ~~~~f~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-------------- 243 (444)
T PRK15115 184 ASKPFIAINCGALPEQ------LLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP-------------- 243 (444)
T ss_pred CCCCeEEEeCCCCCHH------HHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHH--------------
Confidence 4578999999876321 1111223211 1123579999999998332
Q ss_pred HHHHHHHHHhcCCC-----C----CCCEEEEEEeCCCCccchhccCCCCcc-------cEEEecCCCHHHHHH----HHH
Q psy5642 71 RVLAQMLTEMDGIV-----P----LNNVTIVAATNRPDRIDKALLRPGRLD-------RLIYVPLPDDLTRAA----ILK 130 (237)
Q Consensus 71 ~~~~~ll~~l~~~~-----~----~~~v~vI~ttn~~~~ld~al~r~gRf~-------~~i~~~~P~~~~R~~----il~ 130 (237)
+...|+..|+.-. . ..++.+|+||+. +++..+.+ |+|. ..+.+..|...+|.+ +++
T Consensus 244 -~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~~-~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~ 319 (444)
T PRK15115 244 -LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMAR-GEFREDLYYRLNVVSLKIPALAERTEDIPLLAN 319 (444)
T ss_pred -HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHHc-CCccHHHHHhhceeeecCCChHhccccHHHHHH
Confidence 2344555554311 0 125788888885 35544443 5662 135566676666643 444
Q ss_pred HHHc
Q psy5642 131 IRLA 134 (237)
Q Consensus 131 ~~l~ 134 (237)
.++.
T Consensus 320 ~~l~ 323 (444)
T PRK15115 320 HLLR 323 (444)
T ss_pred HHHH
Confidence 5554
No 222
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.39 E-value=2.1 Score=33.51 Aligned_cols=85 Identities=19% Similarity=0.326 Sum_probs=45.4
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHH---------------HhcCCeEEEEccccccccccCCCCCCCCCchH
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRA---------------RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQ 69 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a---------------~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~ 69 (237)
..+.||+.|+|+.+-. +..-..+|-.. ....-.+||||||+.+-.
T Consensus 48 r~~~pfi~vnc~~~~~------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~-------------- 107 (168)
T PF00158_consen 48 RKNGPFISVNCAALPE------ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPP-------------- 107 (168)
T ss_dssp TTTS-EEEEETTTS-H------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-H--------------
T ss_pred cccCCeEEEehhhhhc------chhhhhhhccccccccccccccCCceeeccceEEeecchhhhHH--------------
Confidence 4678999999987632 22223334211 112347999999999833
Q ss_pred HHHHHHHHHHhcC-----CCC----CCCEEEEEEeCCCCccchhccCCCCccc
Q psy5642 70 ERVLAQMLTEMDG-----IVP----LNNVTIVAATNRPDRIDKALLRPGRLDR 113 (237)
Q Consensus 70 ~~~~~~ll~~l~~-----~~~----~~~v~vI~ttn~~~~ld~al~r~gRf~~ 113 (237)
.+...|+..|+. ... .-++-+|+||+. ++...+.. |+|..
T Consensus 108 -~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~~-g~fr~ 156 (168)
T PF00158_consen 108 -ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVEQ-GRFRE 156 (168)
T ss_dssp -HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHT-TSS-H
T ss_pred -HHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHHc-CCChH
Confidence 233444444442 111 125889999984 45554443 67754
No 223
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=90.94 E-value=1.2 Score=41.36 Aligned_cols=101 Identities=18% Similarity=0.284 Sum_probs=51.8
Q ss_pred CCceEEEEEecccccccc-----cChHH-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHH
Q psy5642 5 GGLTEVVESIGPELFRKY-----VGESE-------RCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERV 72 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~-----~g~~~-------~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 72 (237)
.++.||+.++|+.+-... +|... ..-.-+|+.| ....|||||+|.+-. .+
T Consensus 253 r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~---------------~~ 314 (520)
T PRK10820 253 RGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSP---------------RM 314 (520)
T ss_pred CCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCH---------------HH
Confidence 456799999998764211 11000 0001123333 347899999999832 22
Q ss_pred HHHHHHHhcCC--CC-------CCCEEEEEEeCCC-C------ccchhccCCCCcccEEEecCCCHHHHH
Q psy5642 73 LAQMLTEMDGI--VP-------LNNVTIVAATNRP-D------RIDKALLRPGRLDRLIYVPLPDDLTRA 126 (237)
Q Consensus 73 ~~~ll~~l~~~--~~-------~~~v~vI~ttn~~-~------~ld~al~r~gRf~~~i~~~~P~~~~R~ 126 (237)
...|+..++.- .. ..++-||+||+.+ . .+.+.+.. |+. .+.+..|...+|.
T Consensus 315 Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~ 381 (520)
T PRK10820 315 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRP 381 (520)
T ss_pred HHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccCh
Confidence 34455555431 11 1246788887653 2 23334444 443 3555556555544
No 224
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=90.87 E-value=0.59 Score=41.88 Aligned_cols=106 Identities=14% Similarity=0.137 Sum_probs=57.4
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHh-------c--------CCeEEEEccccccccccCCCCCCCCCchHH
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQ-------V--------SPSVIFFDELDSLAGERGDGGGGGGSNVQE 70 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~-------~--------~P~il~iDeid~l~~~~~~~~~~~~~~~~~ 70 (237)
...|||.++|..+...... ..+|-..+. . .-.+||+|||..+-..
T Consensus 129 ~~~PFI~~NCa~~~en~~~------~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~-------------- 188 (403)
T COG1221 129 AEAPFIAFNCAAYSENLQE------AELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE-------------- 188 (403)
T ss_pred cCCCEEEEEHHHhCcCHHH------HHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHh--------------
Confidence 5789999999876543211 113332221 1 1359999999988332
Q ss_pred HHHHHHHHHhcCC-----C----CCCCEEEEEEeCCCCccchhccC-CC----CcccEEEecCCC--HHHHHHHHHHHHc
Q psy5642 71 RVLAQMLTEMDGI-----V----PLNNVTIVAATNRPDRIDKALLR-PG----RLDRLIYVPLPD--DLTRAAILKIRLA 134 (237)
Q Consensus 71 ~~~~~ll~~l~~~-----~----~~~~v~vI~ttn~~~~ld~al~r-~g----Rf~~~i~~~~P~--~~~R~~il~~~l~ 134 (237)
....++..|+.- - ....|.+|++|+ ..++.+++. .. |+-..|.+|+.. .+++..++.++++
T Consensus 189 -~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~ 265 (403)
T COG1221 189 -GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLK 265 (403)
T ss_pred -HHHHHHHHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHH
Confidence 234455555541 1 122477787777 455555554 11 444455555442 2455555555554
No 225
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.86 E-value=3.6 Score=39.32 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHh----------cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEe
Q psy5642 26 SERCVRDVFKRARQ----------VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAAT 95 (237)
Q Consensus 26 ~~~~l~~~f~~a~~----------~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 95 (237)
....++.++..|.. ....||+|||++.++... ...+..++.++. ...+++.+|+++
T Consensus 170 ~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~------------~~~lq~lLr~~~--~e~~~~pLI~I~ 235 (637)
T TIGR00602 170 QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD------------TRALHEILRWKY--VSIGRCPLVFII 235 (637)
T ss_pred hHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh------------HHHHHHHHHHHh--hcCCCceEEEEe
Confidence 35566666666652 246799999999876431 122334444221 122344445444
Q ss_pred C-CCC--------c------cchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC--------chhhHHHHHHHCC
Q psy5642 96 N-RPD--------R------IDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG--------EDVCVEELVRLTE 152 (237)
Q Consensus 96 n-~~~--------~------ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~--------~~~~~~~la~~t~ 152 (237)
+ .+. . |.++++..-|. .+|.|++.+..+-...|+..+...... ....+..|+.
T Consensus 236 TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~--- 311 (637)
T TIGR00602 236 TESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ--- 311 (637)
T ss_pred cCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH---
Confidence 4 222 1 23667642233 379999999999888888777643211 2235556655
Q ss_pred CCCcccccchh
Q psy5642 153 GYSGAEQSLSK 163 (237)
Q Consensus 153 g~s~~Dl~~~~ 163 (237)
.+.+|++..+
T Consensus 312 -~s~GDiRsAI 321 (637)
T TIGR00602 312 -GCSGDIRSAI 321 (637)
T ss_pred -hCCChHHHHH
Confidence 4556744443
No 226
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=90.65 E-value=4.7 Score=38.57 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=68.2
Q ss_pred CEEEEEEeCCC--CccchhccCCCCcc---cEEEecC--C-CHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccc
Q psy5642 88 NVTIVAATNRP--DRIDKALLRPGRLD---RLIYVPL--P-DDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQ 159 (237)
Q Consensus 88 ~v~vI~ttn~~--~~ld~al~r~gRf~---~~i~~~~--P-~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl 159 (237)
++.||+++|.. ..+|++++. ||. ..++|+. | +.+.+..+++..-+..... .....|+..-+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~---------G~l~~f~~eAV 345 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRD---------GKIPHFDRDAV 345 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhc---------cCCCCCCHHHH
Confidence 46788888874 578999999 986 4555552 2 3455555555333221100 00112333334
Q ss_pred cchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCHHHHHHH
Q psy5642 160 SLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQLIKLY 231 (237)
Q Consensus 160 ~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~~~~~~~ 231 (237)
..+++.+.+.+..|.. =......|..+++.|...+..++ ...++.++..+|+.. ......+..+.|
T Consensus 346 a~LI~~~~R~ag~r~~---lsl~~~~l~~l~r~a~~~a~~~~--~~~i~~~~v~~a~~~-~~~i~~~~~~~~ 411 (637)
T PRK13765 346 EEIIREAKRRAGRKGH---LTLKLRDLGGLVRVAGDIARSEG--AELTTAEHVLEAKKI-ARSIEQQLADRY 411 (637)
T ss_pred HHHHHHHHHHhCCccc---cccCHHHHHHHHHHHHHHHHhhc--cceecHHHHHHHHHh-hhhhhHHHHHHH
Confidence 4444444443333320 00112238888999888877666 345888888888754 233444444433
No 227
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=90.23 E-value=0.77 Score=40.16 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=47.2
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC----C-------CCCEEEEEEeCCCC-----------
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV----P-------LNNVTIVAATNRPD----------- 99 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~-------~~~v~vI~ttn~~~----------- 99 (237)
..|++|||+|.+-.+ ....+...|++.. + +.+.-|+|++|-..
T Consensus 122 ~GiccIDe~dk~~~~---------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ 186 (331)
T PF00493_consen 122 GGICCIDEFDKMKED---------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSE 186 (331)
T ss_dssp TSEEEECTTTT--CH---------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGC
T ss_pred Cceeeecccccccch---------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHH
Confidence 479999999987321 2455556665421 1 13578999998766
Q ss_pred --ccchhccCCCCcccEEEe-cCCCHHHHHHHHHHHHcCC
Q psy5642 100 --RIDKALLRPGRLDRLIYV-PLPDDLTRAAILKIRLARS 136 (237)
Q Consensus 100 --~ld~al~r~gRf~~~i~~-~~P~~~~R~~il~~~l~~~ 136 (237)
.+++.|++ |||.++.+ ..|+.+.=..+.++.+..+
T Consensus 187 ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 187 NINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp CT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 58999999 99987765 5778777777777777654
No 228
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=89.81 E-value=4 Score=37.89 Aligned_cols=75 Identities=23% Similarity=0.205 Sum_probs=40.5
Q ss_pred CceEEEEEeccccccc-----ccChHHH-------HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHH
Q psy5642 6 GLTEVVESIGPELFRK-----YVGESER-------CVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVL 73 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~-----~~g~~~~-------~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 73 (237)
.+.+|+.|+|..+-.. .+|.... .-.-.|+.| ....|||||+|.+-. .+.
T Consensus 237 ~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~---------------~~Q 298 (509)
T PRK05022 237 ADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPL---------------ALQ 298 (509)
T ss_pred CCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCH---------------HHH
Confidence 5679999999876421 1110000 000123322 357899999999832 234
Q ss_pred HHHHHHhcCCC---------CCCCEEEEEEeCCC
Q psy5642 74 AQMLTEMDGIV---------PLNNVTIVAATNRP 98 (237)
Q Consensus 74 ~~ll~~l~~~~---------~~~~v~vI~ttn~~ 98 (237)
..|+..++.-. ...++-+|++|+..
T Consensus 299 ~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 299 AKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred HHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 44555554321 01247888888753
No 229
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=1.5 Score=38.18 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=50.7
Q ss_pred ceEEEEEeccccc-ccccChH-HHHHHHHHHHHHh----cCCeEEEEccccccccccCC-CCCCCCCchHHHHHHHHHHH
Q psy5642 7 LTEVVESIGPELF-RKYVGES-ERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGD-GGGGGGSNVQERVLAQMLTE 79 (237)
Q Consensus 7 ~~~~i~v~~s~l~-~~~~g~~-~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~-~~~~~~~~~~~~~~~~ll~~ 79 (237)
+.||-.-++..|. ..|+|+- +..+.+++..|-. .+..||||||||.+..+..+ +...+ ....-+...||..
T Consensus 122 nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRD--VSGEGVQQALLKi 199 (408)
T COG1219 122 NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRD--VSGEGVQQALLKI 199 (408)
T ss_pred CCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccc--cCchHHHHHHHHH
Confidence 5677778887754 5788854 6667777776642 36789999999999977643 22211 1124567778888
Q ss_pred hcCC
Q psy5642 80 MDGI 83 (237)
Q Consensus 80 l~~~ 83 (237)
|.+.
T Consensus 200 iEGT 203 (408)
T COG1219 200 IEGT 203 (408)
T ss_pred HcCc
Confidence 8765
No 230
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=89.53 E-value=1.1 Score=40.85 Aligned_cols=106 Identities=19% Similarity=0.243 Sum_probs=56.4
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHH---------------HhcCCeEEEEccccccccccCCCCCCCCCchH
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRA---------------RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQ 69 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a---------------~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~ 69 (237)
....+|+.++|+.+.. ...-..+|... .......|||||+|.+-.
T Consensus 187 ~~~~~~i~i~c~~~~~------~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~-------------- 246 (469)
T PRK10923 187 RAKAPFIALNMAAIPK------DLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL-------------- 246 (469)
T ss_pred CCCCCeEeeeCCCCCH------HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH--------------
Confidence 3567999999987732 11122232211 112356899999999833
Q ss_pred HHHHHHHHHHhcCCC-----C----CCCEEEEEEeCCCC-------ccchhccCCCCcccEEEecCCCHH----HHHHHH
Q psy5642 70 ERVLAQMLTEMDGIV-----P----LNNVTIVAATNRPD-------RIDKALLRPGRLDRLIYVPLPDDL----TRAAIL 129 (237)
Q Consensus 70 ~~~~~~ll~~l~~~~-----~----~~~v~vI~ttn~~~-------~ld~al~r~gRf~~~i~~~~P~~~----~R~~il 129 (237)
.+...|+..++.-. . ..++-+|+||+..- .+.+.+.. ||. .+.+..|... +...++
T Consensus 247 -~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~ 322 (469)
T PRK10923 247 -DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLA 322 (469)
T ss_pred -HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHH
Confidence 23345555554321 0 12467888887531 34455555 553 2444445443 444456
Q ss_pred HHHHc
Q psy5642 130 KIRLA 134 (237)
Q Consensus 130 ~~~l~ 134 (237)
.+++.
T Consensus 323 ~~~l~ 327 (469)
T PRK10923 323 RHFLQ 327 (469)
T ss_pred HHHHH
Confidence 66654
No 231
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=89.48 E-value=1.8 Score=37.77 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=55.8
Q ss_pred CceEEEEEeccccccc-----ccChHH-------HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHH
Q psy5642 6 GLTEVVESIGPELFRK-----YVGESE-------RCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVL 73 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~-----~~g~~~-------~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 73 (237)
...||+.|+|..+-.. ++|... ..-...|..| ...+|||||+|.+-. .+.
T Consensus 56 ~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~---------------~~Q 117 (326)
T PRK11608 56 WQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM---------------LVQ 117 (326)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCH---------------HHH
Confidence 4679999999876311 111000 0001122222 357999999999832 234
Q ss_pred HHHHHHhcCCC--C-------CCCEEEEEEeCCC-------CccchhccCCCCcc-cEEEecCCCH--HHHHHHHHHHH
Q psy5642 74 AQMLTEMDGIV--P-------LNNVTIVAATNRP-------DRIDKALLRPGRLD-RLIYVPLPDD--LTRAAILKIRL 133 (237)
Q Consensus 74 ~~ll~~l~~~~--~-------~~~v~vI~ttn~~-------~~ld~al~r~gRf~-~~i~~~~P~~--~~R~~il~~~l 133 (237)
..|+..++.-. . ..++.||+||+.. ..+.+.+.. ||. ..|.+|+... ++...++.+++
T Consensus 118 ~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl 194 (326)
T PRK11608 118 EKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFA 194 (326)
T ss_pred HHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHH
Confidence 44555554311 1 1247788888753 245566666 663 3455544421 34445555555
No 232
>PF13173 AAA_14: AAA domain
Probab=89.23 E-value=0.62 Score=34.50 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=34.3
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhcc--CCCCcccEEEec
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALL--RPGRLDRLIYVP 118 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~--r~gRf~~~i~~~ 118 (237)
.+.+|+|||+..+- . ....+..+.+ .. .++-+|.|++....+..... =+||.. .+++.
T Consensus 61 ~~~~i~iDEiq~~~------------~-~~~~lk~l~d---~~---~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~ 120 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP------------D-WEDALKFLVD---NG---PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELY 120 (128)
T ss_pred CCcEEEEehhhhhc------------c-HHHHHHHHHH---hc---cCceEEEEccchHHHhhcccccCCCeEE-EEEEC
Confidence 67899999998871 0 1122333333 21 24445555554444422211 135875 57888
Q ss_pred CCCHHH
Q psy5642 119 LPDDLT 124 (237)
Q Consensus 119 ~P~~~~ 124 (237)
+.+..+
T Consensus 121 Plsf~E 126 (128)
T PF13173_consen 121 PLSFRE 126 (128)
T ss_pred CCCHHH
Confidence 877665
No 233
>PF14516 AAA_35: AAA-like domain
Probab=88.54 E-value=4 Score=35.64 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=56.7
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC---CCC--EEEEEEeCCCCccchhc-cCCCCccc
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP---LNN--VTIVAATNRPDRIDKAL-LRPGRLDR 113 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~--v~vI~ttn~~~~ld~al-~r~gRf~~ 113 (237)
..|-||+|||+|.++... .....+...+..+-..... ..+ .+++++|. ..+.... .+|=-+..
T Consensus 126 ~~~lVL~iDEiD~l~~~~---------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~--~~~~~~~~~SPFNIg~ 194 (331)
T PF14516_consen 126 DKPLVLFIDEIDRLFEYP---------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTE--DYIILDINQSPFNIGQ 194 (331)
T ss_pred CCCEEEEEechhhhccCc---------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcc--cccccCCCCCCccccc
Confidence 479999999999997642 1223444444444332211 122 33333322 2222222 12212345
Q ss_pred EEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCC
Q psy5642 114 LIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYS 155 (237)
Q Consensus 114 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 155 (237)
.|+++.-+.++-..+++.+-.. . ....++.+-..|.|.-
T Consensus 195 ~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 195 PIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHP 233 (331)
T ss_pred ceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCH
Confidence 6788877899998888876433 2 2344888888887754
No 234
>PRK14700 recombination factor protein RarA; Provisional
Probab=88.14 E-value=2.1 Score=36.80 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=48.5
Q ss_pred CCCCEEEEEEeC-CCC-ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC------CCC-chhhHHHHHHHCCCCC
Q psy5642 85 PLNNVTIVAATN-RPD-RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS------PLG-EDVCVEELVRLTEGYS 155 (237)
Q Consensus 85 ~~~~v~vI~ttn-~~~-~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~------~~~-~~~~~~~la~~t~g~s 155 (237)
.++.|++||+|. +|. .+.++|++ |. +++.+..++.++-..+++..+... .+. .+..+..|+. ++
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~----~a 77 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN----YN 77 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH----hc
Confidence 346788888773 354 89999999 88 679999999999999999888631 111 4455555655 45
Q ss_pred ccc
Q psy5642 156 GAE 158 (237)
Q Consensus 156 ~~D 158 (237)
.+|
T Consensus 78 ~GD 80 (300)
T PRK14700 78 EGD 80 (300)
T ss_pred CCH
Confidence 567
No 235
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=87.49 E-value=1.1 Score=33.72 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=43.0
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
..+|+.++|..+- .++++.+ .+.+|+|+|+|.+-. .....++..|.... .
T Consensus 49 ~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~---------------~~Q~~L~~~l~~~~-~ 98 (138)
T PF14532_consen 49 NGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP---------------EAQRRLLDLLKRQE-R 98 (138)
T ss_dssp CS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H---------------HHHHHHHHHHHHCT-T
T ss_pred CCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH---------------HHHHHHHHHHHhcC-C
Confidence 4466666666533 3455554 678999999999833 23344555555432 2
Q ss_pred CCEEEEEEeCC-CCc------cchhccCCCCcc-cEEEec
Q psy5642 87 NNVTIVAATNR-PDR------IDKALLRPGRLD-RLIYVP 118 (237)
Q Consensus 87 ~~v~vI~ttn~-~~~------ld~al~r~gRf~-~~i~~~ 118 (237)
.++-+|+|++. +.. +++.+.. ||. ..|.+|
T Consensus 99 ~~~RlI~ss~~~l~~l~~~~~~~~~L~~--~l~~~~i~lP 136 (138)
T PF14532_consen 99 SNVRLIASSSQDLEELVEEGRFSPDLYY--RLSQLEIHLP 136 (138)
T ss_dssp TTSEEEEEECC-CCCHHHHSTHHHHHHH--HCSTCEEEE-
T ss_pred CCeEEEEEeCCCHHHHhhccchhHHHHH--HhCCCEEeCC
Confidence 34455555543 333 4555555 554 444444
No 236
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=87.05 E-value=0.98 Score=33.94 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=32.1
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC---------CCCCEEEEEEeCCCC-----ccchhccCC
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV---------PLNNVTIVAATNRPD-----RIDKALLRP 108 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vI~ttn~~~-----~ld~al~r~ 108 (237)
.|+++||+...- -++.+.+++.|.+-. -.++.+||||-|..+ .||++++.
T Consensus 64 ~ill~DEiNrap---------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D- 127 (131)
T PF07726_consen 64 NILLADEINRAP---------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD- 127 (131)
T ss_dssp SEEEEETGGGS----------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT-
T ss_pred ceeeecccccCC---------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc-
Confidence 399999985542 356777888775421 124589999999877 78999998
Q ss_pred CCc
Q psy5642 109 GRL 111 (237)
Q Consensus 109 gRf 111 (237)
||
T Consensus 128 -RF 129 (131)
T PF07726_consen 128 -RF 129 (131)
T ss_dssp -TS
T ss_pred -cc
Confidence 88
No 237
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=86.65 E-value=2.7 Score=38.43 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=56.5
Q ss_pred CCceEEEEEecccccccccChHHHHHHH-HHHHHH-------h--------cCCeEEEEccccccccccCCCCCCCCCch
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRD-VFKRAR-------Q--------VSPSVIFFDELDSLAGERGDGGGGGGSNV 68 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~-~f~~a~-------~--------~~P~il~iDeid~l~~~~~~~~~~~~~~~ 68 (237)
..+-||+.|+|.-+- +..+.. +|-..+ . ..-..||||||..+-.
T Consensus 190 R~~~PFVavNcaAip-------~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl------------- 249 (464)
T COG2204 190 RAKGPFIAVNCAAIP-------ENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPL------------- 249 (464)
T ss_pred ccCCCceeeecccCC-------HHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCH-------------
Confidence 456799999997542 222222 333111 1 1246999999988722
Q ss_pred HHHHHHHHHHHhcCCC-----CC----CCEEEEEEeCCCCccchhccCCCCcc-------cEEEecCCCHHHHHH
Q psy5642 69 QERVLAQMLTEMDGIV-----PL----NNVTIVAATNRPDRIDKALLRPGRLD-------RLIYVPLPDDLTRAA 127 (237)
Q Consensus 69 ~~~~~~~ll~~l~~~~-----~~----~~v~vI~ttn~~~~ld~al~r~gRf~-------~~i~~~~P~~~~R~~ 127 (237)
.+...||..|+.-. .+ -+|-||++||. ++...+.. |+|- .++.+..|..-+|.+
T Consensus 250 --~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~--dL~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~E 319 (464)
T COG2204 250 --ELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNR--DLEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKE 319 (464)
T ss_pred --HHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCc--CHHHHHHc-CCcHHHHHhhhccceecCCcccccch
Confidence 34455555554321 11 14889999994 55555554 7774 455677776655544
No 238
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=86.25 E-value=2.5 Score=41.81 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=49.1
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCCC-----------
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRPD----------- 99 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~----------- 99 (237)
..+++|||+|.+-. .....|+..|++.. -..+..|||++|-..
T Consensus 558 gGtL~IDEidkms~---------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~e 622 (915)
T PTZ00111 558 GGVCCIDELDKCHN---------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIE 622 (915)
T ss_pred CCeEEecchhhCCH---------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCccc
Confidence 35889999988722 23344555554321 124688999999742
Q ss_pred --ccchhccCCCCcccEE-EecCCCHHHHHHHHHHHH
Q psy5642 100 --RIDKALLRPGRLDRLI-YVPLPDDLTRAAILKIRL 133 (237)
Q Consensus 100 --~ld~al~r~gRf~~~i-~~~~P~~~~R~~il~~~l 133 (237)
.+++++++ |||.++ -++.|+.+.=..|-.+.+
T Consensus 623 ni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 623 NINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 67899999 999765 456777766555555444
No 239
>PRK08116 hypothetical protein; Validated
Probab=85.90 E-value=1.2 Score=37.84 Aligned_cols=98 Identities=10% Similarity=0.144 Sum_probs=48.3
Q ss_pred ceEEEEEecccccccccC----hHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 7 LTEVVESIGPELFRKYVG----ESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g----~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
+.+++.++.++++..+.. ........+++... ...+|+|||+...-. ..... ..|...++.
T Consensus 142 ~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~~----------t~~~~---~~l~~iin~ 206 (268)
T PRK08116 142 GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAERD----------TEWAR---EKVYNIIDS 206 (268)
T ss_pred CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCCC----------CHHHH---HHHHHHHHH
Confidence 356677777766553321 11111222333222 356999999854211 12222 334444443
Q ss_pred CCCCCCEEEEEEeCCC-Cc----cchhccCCCCc---ccEEEecCCCH
Q psy5642 83 IVPLNNVTIVAATNRP-DR----IDKALLRPGRL---DRLIYVPLPDD 122 (237)
Q Consensus 83 ~~~~~~v~vI~ttn~~-~~----ld~al~r~gRf---~~~i~~~~P~~ 122 (237)
... .+..+|.|||.+ ++ ++..+.+ |+ ...|.+.-|+.
T Consensus 207 r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 207 RYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred HHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 222 223467777764 44 3566666 64 34466666664
No 240
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=83.56 E-value=28 Score=29.98 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=62.6
Q ss_pred HHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC---ccc
Q psy5642 30 VRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD---RID 102 (237)
Q Consensus 30 l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~---~ld 102 (237)
+..+++.+... .+-+|++++.+.+-.. .......|...+.+..+ +.++|+.+++.++ .+.
T Consensus 46 ~~~~~~~~~t~pff~~~rlVvv~~~~~~~~~------------~~~~~~~L~~~l~~~~~-~~~li~~~~~~~d~r~k~~ 112 (326)
T PRK07452 46 AIQALNEAMTPPFGSGGRLVWLKNSPLCQGC------------SEELLAELERTLPLIPE-NTHLLLTNTKKPDGRLKST 112 (326)
T ss_pred HHHHHHHhcCCCCCCCceEEEEeCchhhccC------------CHHHHHHHHHHHcCCCC-CcEEEEEeCCCcchHHHHH
Confidence 67777777543 4558888886543211 12445677788887543 3455554444332 233
Q ss_pred hhccCCCCcccEEEecCC---CHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 103 KALLRPGRLDRLIYVPLP---DDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P---~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
..+.. +..+.++..| +.++...+++..++..+.. ....+..|+..+.
T Consensus 113 k~l~k---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g 163 (326)
T PRK07452 113 KLLQK---LAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVG 163 (326)
T ss_pred HHHHH---ceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 33443 2335665544 4566778888888777765 5566666777653
No 241
>KOG1051|consensus
Probab=83.54 E-value=4 Score=40.36 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=50.2
Q ss_pred CCCceEEEEEeccc------cccc---ccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHH
Q psy5642 4 LGGLTEVVESIGPE------LFRK---YVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74 (237)
Q Consensus 4 ~~~~~~~i~v~~s~------l~~~---~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 74 (237)
++++-.+|.++.+. +.+. |+|..+- -.+.+..+...-+||+|||||.-- -.+.+
T Consensus 616 Fgse~~~IriDmse~~evskligsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh---------------~~v~n 678 (898)
T KOG1051|consen 616 FGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAH---------------PDVLN 678 (898)
T ss_pred cCCccceEEechhhhhhhhhccCCCcccccchhH--HHHHHHHhcCCceEEEEechhhcC---------------HHHHH
Confidence 34556678888873 4333 5554332 356666677677899999998752 24677
Q ss_pred HHHHHhcCCC---------CCCCEEEEEEeCC
Q psy5642 75 QMLTEMDGIV---------PLNNVTIVAATNR 97 (237)
Q Consensus 75 ~ll~~l~~~~---------~~~~v~vI~ttn~ 97 (237)
.|++.+|.-. .-++++||.|+|.
T Consensus 679 ~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 679 ILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred HHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 7777776432 1236999999886
No 242
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=83.34 E-value=26 Score=29.53 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=59.5
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc---hhccCCCCcccEEEe
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID---KALLRPGRLDRLIYV 117 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld---~al~r~gRf~~~i~~ 117 (237)
..-+++|++++.+... .....|+..+.+.. +..++|.+++.++.-. ..+..-+ -...+.+
T Consensus 46 ~~kliii~~~~~~~~~--------------~~~~~L~~~l~~~~--~~~~~i~~~~~~~~~~~~~k~~~~~~-~~~~i~~ 108 (302)
T TIGR01128 46 ERRLVELRNPEGKPGA--------------KGLKALEEYLANPP--PDTLLLIEAPKLDKRKKLTKWLKALK-NAQIVEC 108 (302)
T ss_pred CCeEEEEECCCCCCCH--------------HHHHHHHHHHhcCC--CCEEEEEecCCCCHhHHHHHHHHHhc-CeeEEEe
Confidence 3569999998876321 12566777777743 3444555555333211 1121100 2346889
Q ss_pred cCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 118 PLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 118 ~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
..|+..+...+++..+...+.. ....+..++..+.
T Consensus 109 ~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~ 144 (302)
T TIGR01128 109 KTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVE 144 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 9999999999999999887765 6667777777664
No 243
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=82.66 E-value=2.8 Score=37.96 Aligned_cols=68 Identities=24% Similarity=0.373 Sum_probs=38.7
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----C----CCCEEEEEEeCCCCccchhccCCCCcc
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----P----LNNVTIVAATNRPDRIDKALLRPGRLD 112 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~----~~~v~vI~ttn~~~~ld~al~r~gRf~ 112 (237)
..+|||||+|.+-. .+...|+..++.-. . ..++.+|+||+.. +. .+.+.|+|.
T Consensus 238 ~gtl~ld~i~~l~~---------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~--l~-~~~~~g~~~ 299 (457)
T PRK11361 238 EGTLLLDEIGEMPL---------------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD--LQ-AMVKEGTFR 299 (457)
T ss_pred CCEEEEechhhCCH---------------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC--HH-HHHHcCCch
Confidence 46999999999833 23445555554321 1 1247889988753 21 222334443
Q ss_pred c-------EEEecCCCHHHHHH
Q psy5642 113 R-------LIYVPLPDDLTRAA 127 (237)
Q Consensus 113 ~-------~i~~~~P~~~~R~~ 127 (237)
. .+.+..|...+|.+
T Consensus 300 ~~l~~~l~~~~i~~ppLreR~~ 321 (457)
T PRK11361 300 EDLFYRLNVIHLILPPLRDRRE 321 (457)
T ss_pred HHHHHHhccceecCCChhhchh
Confidence 3 35667776666644
No 244
>PRK04841 transcriptional regulator MalT; Provisional
Probab=82.55 E-value=17 Score=35.81 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch-hc
Q psy5642 28 RCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK-AL 105 (237)
Q Consensus 28 ~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~-al 105 (237)
..+..++..... ..|.+|+|||++.+-.. .....+..++..+ ..++.+|.|++..-.++- .+
T Consensus 107 ~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~-----------~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l 170 (903)
T PRK04841 107 SLFAQLFIELADWHQPLYLVIDDYHLITNP-----------EIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANL 170 (903)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcCcCCCh-----------HHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhH
Confidence 344455554443 57999999999987211 1122344444332 234444446654222321 11
Q ss_pred cCCCCcccEEEec----CCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcc
Q psy5642 106 LRPGRLDRLIYVP----LPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGA 157 (237)
Q Consensus 106 ~r~gRf~~~i~~~----~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~ 157 (237)
+- -+..+.+. .-+.++-.+++...+... + +..++..+...|+|+..+
T Consensus 171 ~~---~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 171 RV---RDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGWATA 221 (903)
T ss_pred Hh---cCcceecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCChHHH
Confidence 11 12234555 558888888887765432 2 567788899999998755
No 245
>KOG1968|consensus
Probab=81.93 E-value=9.8 Score=37.73 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=64.9
Q ss_pred EEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHH
Q psy5642 44 VIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDL 123 (237)
Q Consensus 44 il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~ 123 (237)
||++||+|.++... +..+..+...+.. ..+-+|.|+|....-...-.. |-+..++|+.|+..
T Consensus 431 vil~devD~~~~~d------------Rg~v~~l~~l~~k----s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~ 492 (871)
T KOG1968|consen 431 LILMDEVDGMFGED------------RGGVSKLSSLCKK----SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSE 492 (871)
T ss_pred EEEEeccccccchh------------hhhHHHHHHHHHh----ccCCeEEEecCCCCccccchh--hhcceeeecCCcHH
Confidence 99999999987621 1223444444442 344578888876665554444 55578999999999
Q ss_pred HHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccc
Q psy5642 124 TRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSL 161 (237)
Q Consensus 124 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~ 161 (237)
++..-+..++...... .+..++++...+ ++||+.
T Consensus 493 ~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~ 527 (871)
T KOG1968|consen 493 LIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQ 527 (871)
T ss_pred HHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHH
Confidence 9888888777655443 567777888776 778444
No 246
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.92 E-value=2.3 Score=34.85 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=60.4
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.+.+.|+.++...+. --.....+.|..+.+.-+.....+|+||-+..++... ...-+..|++.+..+.
T Consensus 88 ~G~l~~~~~~~~~~~-~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----------~~~~vl~fm~~~r~l~ 155 (235)
T COG2874 88 SGRLLFFPVNLEPVN-WGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----------SEDAVLNFMTFLRKLS 155 (235)
T ss_pred cceeEEEEecccccc-cChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----------cHHHHHHHHHHHHHHH
Confidence 355667776543222 1233567778888887777778899999999887653 1234566777776665
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCc
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRL 111 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf 111 (237)
..+++ |..|-||..++++... |+
T Consensus 156 d~gKv--IilTvhp~~l~e~~~~--ri 178 (235)
T COG2874 156 DLGKV--IILTVHPSALDEDVLT--RI 178 (235)
T ss_pred hCCCE--EEEEeChhhcCHHHHH--HH
Confidence 55555 3345568999999887 65
No 247
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=81.81 E-value=5 Score=35.51 Aligned_cols=75 Identities=23% Similarity=0.204 Sum_probs=55.5
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC----CC-----CCEEEEEEeCCC-------Cccchhcc
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV----PL-----NNVTIVAATNRP-------DRIDKALL 106 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~-----~~v~vI~ttn~~-------~~ld~al~ 106 (237)
+|+-|+|+... ...++..||+.+++-. .. -..+||+++|.. ....++++
T Consensus 238 Gi~~f~Ei~K~---------------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~ 302 (361)
T smart00763 238 GILEFVEMFKA---------------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALL 302 (361)
T ss_pred ceEEEeehhcC---------------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhh
Confidence 56777766543 1467888888887421 11 126889999987 36789999
Q ss_pred CCCCcccEEEecCC-CHHHHHHHHHHHHcC
Q psy5642 107 RPGRLDRLIYVPLP-DDLTRAAILKIRLAR 135 (237)
Q Consensus 107 r~gRf~~~i~~~~P-~~~~R~~il~~~l~~ 135 (237)
+ |+. .+.+++| +..+-.+|.+..+..
T Consensus 303 d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 303 D--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred h--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 9 998 7999998 778888999988864
No 248
>KOG0478|consensus
Probab=81.60 E-value=27 Score=33.68 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=32.2
Q ss_pred CEEEEEEeCCCC-------------ccchhccCCCCcccEE-EecCCCHHHHHHHHHHHHcCC
Q psy5642 88 NVTIVAATNRPD-------------RIDKALLRPGRLDRLI-YVPLPDDLTRAAILKIRLARS 136 (237)
Q Consensus 88 ~v~vI~ttn~~~-------------~ld~al~r~gRf~~~i-~~~~P~~~~R~~il~~~l~~~ 136 (237)
+.-|+|++|-.. .|||.|++ |||.++ -+..||+..=+.|-.+....+
T Consensus 569 R~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~HivsLy 629 (804)
T KOG0478|consen 569 RCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVALY 629 (804)
T ss_pred cceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHHhc
Confidence 567899998322 78999999 999755 456777764455555544433
No 249
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=81.41 E-value=5.7 Score=28.88 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEe
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAAT 95 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 95 (237)
......+.+........+|+|||+|.+. + ..++..+...++. ..-+++++|+.
T Consensus 73 ~~l~~~~~~~l~~~~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~~--~~~~vvl~G~~ 125 (131)
T PF13401_consen 73 DELRSLLIDALDRRRVVLLVIDEADHLF-S-------------DEFLEFLRSLLNE--SNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEETTHHHH-T-------------HHHHHHHHHHTCS--CBEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCeEEEEeChHhcC-C-------------HHHHHHHHHHHhC--CCCeEEEEECh
Confidence 4444444444455445699999999975 1 3456666665552 21235555554
No 250
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=81.35 E-value=7.1 Score=37.63 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=55.7
Q ss_pred CceEEEEEeccccccc-----ccCh--------HHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHH
Q psy5642 6 GLTEVVESIGPELFRK-----YVGE--------SERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERV 72 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~-----~~g~--------~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 72 (237)
.+-+|+.++|..+... .+|. ....+ ..|+.| ...+|||||+|.+-. .+
T Consensus 426 ~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~a---~~GtL~Ldei~~L~~---------------~~ 486 (686)
T PRK15429 426 NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFELA---DKSSLFLDEVGDMPL---------------EL 486 (686)
T ss_pred CCCCeEEEecccCChhHhhhhhcCcccccccccccchh-hHHHhc---CCCeEEEechhhCCH---------------HH
Confidence 5679999999876321 1111 11111 123333 358999999999822 23
Q ss_pred HHHHHHHhcCCC---------CCCCEEEEEEeCCCCccchhccCCCCccc-------EEEecCCCHHHHHH----HHHHH
Q psy5642 73 LAQMLTEMDGIV---------PLNNVTIVAATNRPDRIDKALLRPGRLDR-------LIYVPLPDDLTRAA----ILKIR 132 (237)
Q Consensus 73 ~~~ll~~l~~~~---------~~~~v~vI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~R~~----il~~~ 132 (237)
...|+..|+.-. ...++-+|+||+..- ... ...|+|.. .+.+..|...+|.+ +++.+
T Consensus 487 Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l--~~~-~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~ 563 (686)
T PRK15429 487 QPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDL--KKM-VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAF 563 (686)
T ss_pred HHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCH--HHH-HHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHH
Confidence 444555553311 113577888887532 111 11233332 45666666666544 44555
Q ss_pred Hc
Q psy5642 133 LA 134 (237)
Q Consensus 133 l~ 134 (237)
+.
T Consensus 564 l~ 565 (686)
T PRK15429 564 TF 565 (686)
T ss_pred HH
Confidence 43
No 251
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.15 E-value=4.1 Score=34.59 Aligned_cols=85 Identities=22% Similarity=0.380 Sum_probs=47.4
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC--------CCCEEEEEEeCCCC---ccchhccCCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP--------LNNVTIVAATNRPD---RIDKALLRPG 109 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~v~vI~ttn~~~---~ld~al~r~g 109 (237)
+..|+||||+..-..+.-+.. ...+++.++++.= +... -.++.+||+.+.+. .+++.+.|
T Consensus 100 k~lv~fiDDlN~p~~d~ygtq------~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r-- 170 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYGTQ------PPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR-- 170 (272)
T ss_dssp SEEEEEEETTT-S---TTS--------HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--
T ss_pred cEEEEEecccCCCCCCCCCCc------CHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--
Confidence 356999999876544432211 1123333333321 1111 12588899887533 48888988
Q ss_pred CcccEEEecCCCHHHHHHHHHHHHcC
Q psy5642 110 RLDRLIYVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 110 Rf~~~i~~~~P~~~~R~~il~~~l~~ 135 (237)
.|. ++.++.|+.+.-..|+..++..
T Consensus 171 ~f~-i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 171 HFN-ILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp TEE-EEE----TCCHHHHHHHHHHHH
T ss_pred heE-EEEecCCChHHHHHHHHHHHhh
Confidence 885 7999999999999998887753
No 252
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=81.13 E-value=35 Score=29.39 Aligned_cols=121 Identities=15% Similarity=0.244 Sum_probs=70.2
Q ss_pred HHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc----
Q psy5642 30 VRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI---- 101 (237)
Q Consensus 30 l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l---- 101 (237)
+..+++.+... .+-++++++.+.+-... ....+..+...+ +......++++..++..+.-
T Consensus 61 ~~~l~~~~~t~~lF~~~klvii~~~~~l~~~~-----------~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~ 128 (340)
T PRK05574 61 WDDVLEACQSLPLFSDRKLVELRLPEFLTGAK-----------GEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKS 128 (340)
T ss_pred HHHHHHHhhccCccccCeEEEEECCCCCCchh-----------HHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhh
Confidence 45555555442 35588888887663321 123345556656 43333345556555543321
Q ss_pred --chhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhHHhhhh
Q psy5642 102 --DKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKHRAKKI 169 (237)
Q Consensus 102 --d~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~ 169 (237)
-..+.. + ...+.++.|+..+...+++..+...+.. ....++.|+..+. .|+..+.....++
T Consensus 129 k~~k~~~~--~-~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~----~d~~~l~~El~KL 192 (340)
T PRK05574 129 AWFKALKK--K-AVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVE----GNLLALAQELEKL 192 (340)
T ss_pred HHHHHHHh--C-ceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC----chHHHHHHHHHHH
Confidence 123322 2 3678899999999999999999887765 5566677776654 4644444444443
No 253
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=80.88 E-value=2.2 Score=39.88 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=57.1
Q ss_pred CCCceEEEEEecccccccc-----cChHHH--------HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHH
Q psy5642 4 LGGLTEVVESIGPELFRKY-----VGESER--------CVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQE 70 (237)
Q Consensus 4 ~~~~~~~i~v~~s~l~~~~-----~g~~~~--------~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~ 70 (237)
...+.||+.|+|..+-... +|.... .-.-+|+.| ....|||||++.+-.
T Consensus 275 ~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~--------------- 336 (538)
T PRK15424 275 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPL--------------- 336 (538)
T ss_pred ccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCH---------------
Confidence 3467899999998764211 110000 001133333 246999999999832
Q ss_pred HHHHHHHHHhcCCC-----C----CCCEEEEEEeCCCCccchhccCCCCccc-------EEEecCCCHHHH----HHHHH
Q psy5642 71 RVLAQMLTEMDGIV-----P----LNNVTIVAATNRPDRIDKALLRPGRLDR-------LIYVPLPDDLTR----AAILK 130 (237)
Q Consensus 71 ~~~~~ll~~l~~~~-----~----~~~v~vI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~R----~~il~ 130 (237)
.+...|+..|++-. . .-++-+|++|+.. +...+ ..|+|.. .+.+..|..-+| ..+++
T Consensus 337 ~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~ 413 (538)
T PRK15424 337 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAE 413 (538)
T ss_pred HHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHH
Confidence 23445555554321 1 1236788888753 32222 2345542 345566655554 44555
Q ss_pred HHHcC
Q psy5642 131 IRLAR 135 (237)
Q Consensus 131 ~~l~~ 135 (237)
+++..
T Consensus 414 ~fl~~ 418 (538)
T PRK15424 414 SFLKQ 418 (538)
T ss_pred HHHHH
Confidence 66643
No 254
>KOG0990|consensus
Probab=80.21 E-value=5.8 Score=34.57 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHh-------cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 28 RCVRDVFKRARQ-------VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 28 ~~l~~~f~~a~~-------~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
+.--..|..++. ..+..+++||.|+...+ ..+.|-..+..+. .+.-++-.+|++..
T Consensus 111 r~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~---------------AQnALRRviek~t--~n~rF~ii~n~~~k 173 (360)
T KOG0990|consen 111 RQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD---------------AQNALRRVIEKYT--ANTRFATISNPPQK 173 (360)
T ss_pred HHHHHHHHhhccceeccccCceeEEEecchhHhhHH---------------HHHHHHHHHHHhc--cceEEEEeccChhh
Confidence 333445655553 26789999999987443 1233334445543 34455577899999
Q ss_pred cchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC
Q psy5642 101 IDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS 136 (237)
Q Consensus 101 ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~ 136 (237)
+.|++++ ||.. +.+...+..+-...+.+.....
T Consensus 174 i~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 174 IHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred cCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcc
Confidence 9999999 9875 6666667666666666666543
No 255
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=79.00 E-value=4.9 Score=37.50 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=26.0
Q ss_pred CCceEEEEEecccccccc-----cChHH--------HHHHHHHHHHHhcCCeEEEEcccccc
Q psy5642 5 GGLTEVVESIGPELFRKY-----VGESE--------RCVRDVFKRARQVSPSVIFFDELDSL 53 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~-----~g~~~--------~~l~~~f~~a~~~~P~il~iDeid~l 53 (237)
..+.||+.|+|..+-... +|..+ ..-.-+|+.| ....|||||++.+
T Consensus 261 r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L 319 (526)
T TIGR02329 261 RRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEM 319 (526)
T ss_pred cCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhC
Confidence 467899999998763211 11000 0001123323 2469999999998
No 256
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=77.61 E-value=20 Score=29.66 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=55.3
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHH----hcC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTE----MDG 82 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~----l~~ 82 (237)
+.+++..+|++-++ ...+.++|.-+... -+-+.|||++.+-.. .-.++.+.+.. +..
T Consensus 57 G~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~------------vLS~i~~~i~~i~~al~~ 117 (231)
T PF12774_consen 57 GRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEE------------VLSVISQQIQSIQDALRA 117 (231)
T ss_dssp T--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHH------------HHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHH------------HHHHHHHHHHHHHHhhcc
Confidence 45677888887765 78888899877763 689999999987321 11222222222 222
Q ss_pred CCC-----------CCCEEEEEEeC----CCCccchhccCCCCcccEEEecCCCHHHHHHHHH
Q psy5642 83 IVP-----------LNNVTIVAATN----RPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILK 130 (237)
Q Consensus 83 ~~~-----------~~~v~vI~ttn----~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~ 130 (237)
-.. +...-++.|.| .-..+|+.++. -|. -|.+..||.....+++-
T Consensus 118 ~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lFR-pvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 118 KQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LFR-PVAMMVPDLSLIAEILL 177 (231)
T ss_dssp TSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TEE-EEE--S--HHHHHHHHH
T ss_pred cccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hhh-eeEEeCCCHHHHHHHHH
Confidence 110 12344555665 24589999998 784 59999999877666654
No 257
>PHA00012 I assembly protein
Probab=77.45 E-value=3.3 Score=36.23 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=40.2
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLR 107 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r 107 (237)
.-+|+++||+..+++.|...... -...++++... ...+.-+|.+|-+|+.+|..+|.
T Consensus 81 ~gsLlVlDEaq~~fp~R~~~sk~---------p~~vie~l~~h-Rh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 81 KNGLLVLDECGTWFNSRSWNDKE---------RQPVIDWFLHA-RKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CCcEEEEECcccccCCCCcCcCC---------cHHHHHHHHHh-ccCCceEEEEcCCHHHHhHHHHH
Confidence 45699999999999988765421 12233333332 22467789999999999999985
No 258
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=77.20 E-value=27 Score=35.97 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=52.5
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecC
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPL 119 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~ 119 (237)
..+.+|+|||++.. .+...+....+.. . .+-.||.||++.. +.+....+++++++.
T Consensus 295 ~krvLLVLDdv~~~-----------------~~l~~L~~~~~~~-~-~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~ 350 (1153)
T PLN03210 295 HRKVLIFIDDLDDQ-----------------DVLDALAGQTQWF-G-SGSRIIVITKDKH-----FLRAHGIDHIYEVCL 350 (1153)
T ss_pred CCeEEEEEeCCCCH-----------------HHHHHHHhhCccC-C-CCcEEEEEeCcHH-----HHHhcCCCeEEEecC
Confidence 46789999997642 2233333322221 1 2334566777533 333235678999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCch---hhHHHHHHHCCCCC
Q psy5642 120 PDDLTRAAILKIRLARSPLGED---VCVEELVRLTEGYS 155 (237)
Q Consensus 120 P~~~~R~~il~~~l~~~~~~~~---~~~~~la~~t~g~s 155 (237)
|+.++..+++..+..+....++ ..-.+++.++.|..
T Consensus 351 l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 351 PSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP 389 (1153)
T ss_pred CCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 9999999999877643322211 11234556665543
No 259
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=76.49 E-value=3.6 Score=33.50 Aligned_cols=65 Identities=28% Similarity=0.350 Sum_probs=26.1
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCC------------
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRP------------ 98 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~------------ 98 (237)
..|||+||+-.+ ...++..|++-|+.-. -..++++|+|+|-=
T Consensus 107 ~GVLflDE~~ef---------------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C 171 (206)
T PF01078_consen 107 RGVLFLDELNEF---------------DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRC 171 (206)
T ss_dssp TSEEEECETTTS----------------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S-------------
T ss_pred CCEEEechhhhc---------------CHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccc
Confidence 469999998555 2567888888775421 01257888888731
Q ss_pred -----------CccchhccCCCCcccEEEecCCCHH
Q psy5642 99 -----------DRIDKALLRPGRLDRLIYVPLPDDL 123 (237)
Q Consensus 99 -----------~~ld~al~r~gRf~~~i~~~~P~~~ 123 (237)
..+...|+. |||-.+.++..+.+
T Consensus 172 ~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 172 RCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp ------------------------------------
T ss_pred cccccccccccccccccccc--cccccccccccccC
Confidence 134455566 66666666655443
No 260
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=75.64 E-value=8.1 Score=28.82 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
+.++..+....|.+|+|||+..+....... ...........+..++..+.+ .++.+|++++.+..
T Consensus 75 ~~~~~~~~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~~~ 139 (165)
T cd01120 75 SKAERLRERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERARK----GGVTVIFTLQVPSG 139 (165)
T ss_pred HHHHHHHhCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHhc----CCceEEEEEecCCc
Confidence 344555666789999999999987543210 000111222334444444333 45666666665543
No 261
>KOG0482|consensus
Probab=74.40 E-value=4.2 Score=37.67 Aligned_cols=129 Identities=17% Similarity=0.081 Sum_probs=68.0
Q ss_pred CEEEEEEeCCCC-------------ccchhccCCCCcccEE-EecCCCHHHHHHHHHHHHc--CCCCCch-----hhH--
Q psy5642 88 NVTIVAATNRPD-------------RIDKALLRPGRLDRLI-YVPLPDDLTRAAILKIRLA--RSPLGED-----VCV-- 144 (237)
Q Consensus 88 ~v~vI~ttn~~~-------------~ld~al~r~gRf~~~i-~~~~P~~~~R~~il~~~l~--~~~~~~~-----~~~-- 144 (237)
+.-|+|++|-.+ .+|.||++ |||..+ -...|+.+.=..+.++..- .+..++. .+.
T Consensus 482 R~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~ 559 (721)
T KOG0482|consen 482 RTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNL 559 (721)
T ss_pred hHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHH
Confidence 566778877544 78999999 999654 4457888877777775442 2211111 222
Q ss_pred ----HHHHHHCCCCCcccccchhHHhhh-hccccCCCC-CCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhh
Q psy5642 145 ----EELVRLTEGYSGAEQSLSKHRAKK-IRPRRESNP-GPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQL 218 (237)
Q Consensus 145 ----~~la~~t~g~s~~Dl~~~~~~a~~-~~~~~~~~~-~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~ 218 (237)
=.++++-.-+.|.+|.--+..|.- ++-...... ..-.++.-|-.+++.....+.-+- ...|..+|..+||+.
T Consensus 560 mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRl--s~~V~~~DV~EALRL 637 (721)
T KOG0482|consen 560 MRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRL--SDSVEEDDVNEALRL 637 (721)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhh--ccccchhhHHHHHHH
Confidence 224555556666665544443321 110000111 112222334444444443333222 235888999999886
Q ss_pred cC
Q psy5642 219 VK 220 (237)
Q Consensus 219 ~~ 220 (237)
++
T Consensus 638 me 639 (721)
T KOG0482|consen 638 ME 639 (721)
T ss_pred HH
Confidence 54
No 262
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.04 E-value=25 Score=34.70 Aligned_cols=112 Identities=22% Similarity=0.280 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHH-hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhc
Q psy5642 27 ERCVRDVFKRAR-QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKAL 105 (237)
Q Consensus 27 ~~~l~~~f~~a~-~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al 105 (237)
...+..+|.... ...|..|+|||.+.+-. ......+.-|++.. ..++.+|+||..--.+.-+=
T Consensus 114 ~~l~~~L~~Ela~~~~pl~LVlDDyHli~~-----------~~l~~~l~fLl~~~-----P~~l~lvv~SR~rP~l~la~ 177 (894)
T COG2909 114 ESLLSSLLNELASYEGPLYLVLDDYHLISD-----------PALHEALRFLLKHA-----PENLTLVVTSRSRPQLGLAR 177 (894)
T ss_pred HHHHHHHHHHHHhhcCceEEEeccccccCc-----------ccHHHHHHHHHHhC-----CCCeEEEEEeccCCCCcccc
Confidence 345666666544 45899999999988722 22233444444432 24677777776533333222
Q ss_pred cCCCCcccEEEec----CCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCccc
Q psy5642 106 LRPGRLDRLIYVP----LPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 106 ~r~gRf~~~i~~~----~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~D 158 (237)
.| -=+..++++ .-+.++-.+++...... ++ ...+++.|-.+|+|+..+=
T Consensus 178 lR--lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-~L-d~~~~~~L~~~teGW~~al 230 (894)
T COG2909 178 LR--LRDELLEIGSEELRFDTEEAAAFLNDRGSL-PL-DAADLKALYDRTEGWAAAL 230 (894)
T ss_pred ee--ehhhHHhcChHhhcCChHHHHHHHHHcCCC-CC-ChHHHHHHHhhcccHHHHH
Confidence 22 113445555 24778888888776643 22 4678899999999998664
No 263
>COG1106 Predicted ATPases [General function prediction only]
Probab=73.22 E-value=4.9 Score=35.75 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 24 GESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 24 g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
|++-+.+-.+........-.+++|||+|..... .....++..+.......++.+++||....-||-
T Consensus 253 ~~G~kk~~~i~~~l~~~~~k~l~iDEie~~lHp--------------~lm~~~l~~~~~~~~~~niq~~~TTH~~e~id~ 318 (371)
T COG1106 253 GEGFKKALIIVPLLSDLNDKVLLIDEIENGLHP--------------SLMILILETLEDKVKNNNIQVFLTTHSTEFIDL 318 (371)
T ss_pred cchHHHHHHHHhhhhhcCCceEEeehhhhccCH--------------HHHHHHHHHHHhhcccceEEEEeecccHHHHHH
Confidence 344444444544444445579999999997654 234445554443334457999999999999998
Q ss_pred hccC
Q psy5642 104 ALLR 107 (237)
Q Consensus 104 al~r 107 (237)
.+.+
T Consensus 319 ~l~~ 322 (371)
T COG1106 319 LLER 322 (371)
T ss_pred HHHh
Confidence 8886
No 264
>KOG2383|consensus
Probab=73.14 E-value=5.5 Score=35.79 Aligned_cols=77 Identities=26% Similarity=0.384 Sum_probs=43.8
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC-CCccchhccCCCCcccEEEecCC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR-PDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~-~~~ld~al~r~gRf~~~i~~~~P 120 (237)
-++|.|||+-.- +-+..-+++.|...|=. ++|++|||+|+ |++|-..=+. +..++|
T Consensus 194 a~lLCFDEfQVT------------DVADAmiL~rLf~~Lf~----~GvVlvATSNR~P~dLYknGlQ-----R~~F~P-- 250 (467)
T KOG2383|consen 194 AILLCFDEFQVT------------DVADAMILKRLFEHLFK----NGVVLVATSNRAPEDLYKNGLQ-----RENFIP-- 250 (467)
T ss_pred ceeeeechhhhh------------hHHHHHHHHHHHHHHHh----CCeEEEEeCCCChHHHhhcchh-----hhhhhh--
Confidence 358888887442 11223344444444433 58999999987 5555433222 233332
Q ss_pred CHHHHHHHHHHHHcCCCCCchhhHH
Q psy5642 121 DDLTRAAILKIRLARSPLGEDVCVE 145 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~~~~~~~~ 145 (237)
...+|+....-..+++.+|+.
T Consensus 251 ----fI~~L~~rc~vi~ldS~vDYR 271 (467)
T KOG2383|consen 251 ----FIALLEERCKVIQLDSGVDYR 271 (467)
T ss_pred ----HHHHHHHhheEEecCCccchh
Confidence 345666666666666777776
No 265
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=72.95 E-value=1.6 Score=40.41 Aligned_cols=109 Identities=22% Similarity=0.314 Sum_probs=59.1
Q ss_pred CCceEEEEEeccc---------ccccccChHHHHH----HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHH
Q psy5642 5 GGLTEVVESIGPE---------LFRKYVGESERCV----RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQER 71 (237)
Q Consensus 5 ~~~~~~i~v~~s~---------l~~~~~g~~~~~l----~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~ 71 (237)
..+-|||.++|.- ||+---|.-.-.. .-+|+.|. -..||+|||-.+- -.
T Consensus 294 R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgemp---------------l~ 355 (560)
T COG3829 294 RANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEMP---------------LP 355 (560)
T ss_pred ccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEehhhccCC---------------HH
Confidence 4577999999953 2322222111111 11333333 3589999997651 34
Q ss_pred HHHHHHHHhcCCC--------C-CCCEEEEEEeCCCCccchhccCCCCccc-------EEEecCCCHHHH----HHHHHH
Q psy5642 72 VLAQMLTEMDGIV--------P-LNNVTIVAATNRPDRIDKALLRPGRLDR-------LIYVPLPDDLTR----AAILKI 131 (237)
Q Consensus 72 ~~~~ll~~l~~~~--------~-~~~v~vI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~R----~~il~~ 131 (237)
+...||..|+.-. . .-.|-|||+||. .+-+++.. |+|.. ++.+..|..-+| ..+..+
T Consensus 356 LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~--nL~~~i~~-G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~ 432 (560)
T COG3829 356 LQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNR--NLEKMIAE-GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEY 432 (560)
T ss_pred HHHHHHHHHhhceEEecCCCCceeeEEEEEeccCc--CHHHHHhc-CcchhhheeeeceeeecCCCcccCcchHHHHHHH
Confidence 5566777665421 1 124999999994 55555554 78752 344455544333 334445
Q ss_pred HHc
Q psy5642 132 RLA 134 (237)
Q Consensus 132 ~l~ 134 (237)
++.
T Consensus 433 Fl~ 435 (560)
T COG3829 433 FLD 435 (560)
T ss_pred HHH
Confidence 554
No 266
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=72.35 E-value=21 Score=28.62 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=37.1
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLD 112 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~ 112 (237)
.+..|-...|.+|++||--.=+ +......+..++..+. .. +..+|.+|++.+.++. +
T Consensus 137 ~la~al~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~~--------~ 193 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAAL-----------DAAAVALFAELIRAHL---AQ-GGIVIAATHIPLGLPG--------A 193 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCchhhcc--------C
Confidence 3455555689999999953311 1222233333443332 22 4467888888777765 3
Q ss_pred cEEEecCCCH
Q psy5642 113 RLIYVPLPDD 122 (237)
Q Consensus 113 ~~i~~~~P~~ 122 (237)
.++.+..|..
T Consensus 194 ~~~~~~~~~~ 203 (207)
T PRK13539 194 RELDLGPFAA 203 (207)
T ss_pred cEEeecCccC
Confidence 4566655543
No 267
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=71.00 E-value=6 Score=36.15 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhc----CCe-EEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 27 ERCVRDVFKRARQV----SPS-VIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~-il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
-..+.++|+..-.- +|- |+||||+|.|+.+- ++....-+......+ .+.+|=|+..|-+|.+|
T Consensus 236 LwLLsELfe~LPEvGD~dkPklVfFfDEAHLLF~da--------~kall~~ieqvvrLI----RSKGVGv~fvTQ~P~Di 303 (502)
T PF05872_consen 236 LWLLSELFEQLPEVGDLDKPKLVFFFDEAHLLFNDA--------PKALLDKIEQVVRLI----RSKGVGVYFVTQNPTDI 303 (502)
T ss_pred HHHHHHHHHhCccCCCCCCceEEEEEechhhhhcCC--------CHHHHHHHHHHHHHh----hccCceEEEEeCCCCCC
Confidence 34556666655432 466 57799999998642 211111222222222 33678888899999999
Q ss_pred chhccC--CCCcccEEEecCC
Q psy5642 102 DKALLR--PGRLDRLIYVPLP 120 (237)
Q Consensus 102 d~al~r--~gRf~~~i~~~~P 120 (237)
|..++. .+|+.+-+.--.|
T Consensus 304 P~~VL~QLGnrIQHaLRAfTP 324 (502)
T PF05872_consen 304 PDDVLGQLGNRIQHALRAFTP 324 (502)
T ss_pred CHHHHHhhhhHHHHHHhcCCH
Confidence 999996 2344444433334
No 268
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=70.92 E-value=8.6 Score=36.98 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=34.2
Q ss_pred CEEEEEEeCCCC-------------ccchhccCCCCcccEEEec-CCCHHHHHHHHHHHHcCC
Q psy5642 88 NVTIVAATNRPD-------------RIDKALLRPGRLDRLIYVP-LPDDLTRAAILKIRLARS 136 (237)
Q Consensus 88 ~v~vI~ttn~~~-------------~ld~al~r~gRf~~~i~~~-~P~~~~R~~il~~~l~~~ 136 (237)
+.-|+|++|-.. +||+.|++ |||..+.+. .|+.+.=+.+..+.+..+
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 466788888665 68899999 999776554 677776666666666544
No 269
>KOG0732|consensus
Probab=70.79 E-value=2.5 Score=42.35 Aligned_cols=98 Identities=16% Similarity=0.248 Sum_probs=63.4
Q ss_pred ccccccc-cChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEE
Q psy5642 16 PELFRKY-VGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAA 94 (237)
Q Consensus 16 s~l~~~~-~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t 94 (237)
+.|.+.- .++....|..+|.+|+..+||||||-++|.+...... .+...++..++.......|..+-|
T Consensus 627 ssll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~-----------s~~~~~~~~l~~~~~~t~i~e~~t 695 (1080)
T KOG0732|consen 627 SSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV-----------SFLEEFLSSLDEKALSTPILELHT 695 (1080)
T ss_pred HHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc-----------hhhhcchhcchhhhhccchhhhcc
Confidence 3444433 5677889999999999999999999999998655422 234455555554333333433333
Q ss_pred eCCCCccchhccCCCCc---ccEEEecCCCHHHHHHHHHHHHcC
Q psy5642 95 TNRPDRIDKALLRPGRL---DRLIYVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 95 tn~~~~ld~al~r~gRf---~~~i~~~~P~~~~R~~il~~~l~~ 135 (237)
-. .. .| ...+.+..|..+.+..+++..+++
T Consensus 696 ~~---------~~--~~~~~~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 696 WD---------TS--FESVNKSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred cc---------cc--ccccCccccccccchhhhhHHHHHHHHHH
Confidence 22 11 11 245678889999988888877754
No 270
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=68.82 E-value=45 Score=25.73 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccc
Q psy5642 30 VRDVFKRARQVSPSVIFFDELDSLAG 55 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid~l~~ 55 (237)
+..+...+....|.+|+||++-.+..
T Consensus 84 ~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 84 IQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 45555555667899999999988754
No 271
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=67.80 E-value=23 Score=34.86 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=56.5
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHH---hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRAR---QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~---~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
.+++.++..+|.+.-. ...-.+.-+|.+.. ...|.++++||...++.+. .....+..++..+ .
T Consensus 607 ~~~~~fdl~~l~~~~~-~~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~~~----------~~~~~i~~~lk~~---R 672 (800)
T PRK13898 607 ARVFGFEMGELLKDPV-SLAPVLLYLFHRISISLDGTPSMIVLDEAWALIDNP----------VFAPKIKDWLKVL---R 672 (800)
T ss_pred CcEEEEEchhhcCChh-hHHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCCCH----------HHHHHHHHHHHHH---H
Confidence 4577777777765522 12344445555543 3479999999998876521 1122233333333 2
Q ss_pred CCCCEEEEEEeCCCCccc-----hhccCCCCcccEEEecCCCHH
Q psy5642 85 PLNNVTIVAATNRPDRID-----KALLRPGRLDRLIYVPLPDDL 123 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld-----~al~r~gRf~~~i~~~~P~~~ 123 (237)
+ .+..++.+|.+++.+- ++++. -....|.+|.|...
T Consensus 673 K-~~~~~i~~TQ~~~d~~~s~~~~~i~~--~~~t~I~lpn~~a~ 713 (800)
T PRK13898 673 K-LNTFVIFATQSVEDASKSAISDTLVQ--QTATQIFLPNLKAT 713 (800)
T ss_pred H-cCCEEEEEeCCHHHHHhChhHHHHHH--hCCeEEEcCChhhH
Confidence 3 2445677777776543 44454 45667888777643
No 272
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=67.23 E-value=7.7 Score=34.44 Aligned_cols=43 Identities=23% Similarity=0.481 Sum_probs=29.0
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC-CCcc
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR-PDRI 101 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~-~~~l 101 (237)
.+|+|||++.-- -....++..|+..+-. .++++|+|+|. |++|
T Consensus 129 ~lLcfDEF~V~D------------iaDAmil~rLf~~l~~----~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 129 RLLCFDEFQVTD------------IADAMILKRLFEALFK----RGVVLVATSNRPPEDL 172 (362)
T ss_pred CEEEEeeeeccc------------hhHHHHHHHHHHHHHH----CCCEEEecCCCChHHH
Confidence 499999987631 1114566667766644 58899999998 4444
No 273
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=65.97 E-value=10 Score=30.36 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC
Q psy5642 28 RCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR 97 (237)
Q Consensus 28 ~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~ 97 (237)
..+..+...+....|.+|+||-+..++........ ....+.+..++..|..+....++.+|.|...
T Consensus 84 ~~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~----~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 84 VAIQKTSKFIDRDSASLVVVDSFTALYRLELSDDR----ISRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCcc----HHHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 34566666666668999999999998643211111 1112233334444444433456777777543
No 274
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=64.95 E-value=24 Score=27.08 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 30 VRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-+-.+..|-...|.+|++||--.-+ +....+.+..++..+.. . +..+|.+|++++.++
T Consensus 89 qrl~laral~~~p~illlDEP~~~L-----------D~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~~~~ 146 (163)
T cd03216 89 QMVEIARALARNARLLILDEPTAAL-----------TPAEVERLFKVIRRLRA---Q-GVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCC-----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 3445666777789999999953311 22223444444444422 2 345666777665443
No 275
>PRK09183 transposase/IS protein; Provisional
Probab=64.06 E-value=9.1 Score=32.18 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=23.5
Q ss_pred EEEEEecccccccccC-hHHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy5642 9 EVVESIGPELFRKYVG-ESERCVRDVFKRARQVSPSVIFFDELDSL 53 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g-~~~~~l~~~f~~a~~~~P~il~iDeid~l 53 (237)
.+..+++.++...+.. .....+..+|... ...|.+|+|||++..
T Consensus 132 ~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 132 KVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred eEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 4445555555433211 1112244555543 246789999999765
No 276
>PRK13695 putative NTPase; Provisional
Probab=63.65 E-value=37 Score=26.21 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=37.4
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC--ccchhccCCCCcc-cEEEe
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD--RIDKALLRPGRLD-RLIYV 117 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~--~ld~al~r~gRf~-~~i~~ 117 (237)
.|.+|++||+..+-. ........+...++. +..+|++++... ...+.+.+ |.+ ..+++
T Consensus 96 ~~~~lllDE~~~~e~------------~~~~~~~~l~~~~~~-----~~~~i~v~h~~~~~~~~~~i~~--~~~~~i~~~ 156 (174)
T PRK13695 96 EADVIIIDEIGKMEL------------KSPKFVKAVEEVLDS-----EKPVIATLHRRSVHPFVQEIKS--RPGGRVYEL 156 (174)
T ss_pred CCCEEEEECCCcchh------------hhHHHHHHHHHHHhC-----CCeEEEEECchhhHHHHHHHhc--cCCcEEEEE
Confidence 688999999643210 011223333333322 345777777632 34455666 655 34455
Q ss_pred cCCCHHHHHHHHHHHH
Q psy5642 118 PLPDDLTRAAILKIRL 133 (237)
Q Consensus 118 ~~P~~~~R~~il~~~l 133 (237)
+.+.|.++....+
T Consensus 157 ---~~~~r~~~~~~~~ 169 (174)
T PRK13695 157 ---TPENRDSLPFEIL 169 (174)
T ss_pred ---cchhhhhHHHHHH
Confidence 5566666655544
No 277
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=61.62 E-value=54 Score=25.83 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchh
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKA 104 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~a 104 (237)
.+..|-...|.++++||--.-+ +......+..++.... . .+..+|.+|+++..++.+
T Consensus 133 ~la~al~~~p~~lllDEP~~~L-----------D~~~~~~l~~~l~~~~---~-~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 133 AIARLIACQSDLWLLDEVETNL-----------SKENRDLLNNLIVMKA---N-SGGIVLLSSHLESSIKSA 189 (195)
T ss_pred HHHHHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCccccchh
Confidence 3445555689999999964321 1222333444443322 1 244677788887766543
No 278
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=59.84 E-value=1.9e+02 Score=29.55 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccc
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGE 56 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~ 56 (237)
...++.+|. ..||+|+|||+=..+.+
T Consensus 89 ~~~L~eLl~----~~P~LILiDEl~~Y~~~ 114 (1035)
T PF04465_consen 89 KDVLRELLG----GRPVLILIDELVAYARQ 114 (1035)
T ss_pred HHHHHHHhC----CCCEEEEeecHHHHHHH
Confidence 456777774 35999999999887763
No 279
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=59.76 E-value=48 Score=28.21 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHh--cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCC----CEEEEEEeCCC-C
Q psy5642 27 ERCVRDVFKRARQ--VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLN----NVTIVAATNRP-D 99 (237)
Q Consensus 27 ~~~l~~~f~~a~~--~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~----~v~vI~ttn~~-~ 99 (237)
...+..+...+.. .+|.||+|||-|..+.+.-..+ +.......-+-..+..+...+ .+++-|.+.-. .
T Consensus 127 ~~~l~~li~~l~~~~~~kvvlLIDEYD~p~~~~~~~~-----e~~~~~~~~lr~ff~~~k~~~~~l~~~~iTGi~~i~k~ 201 (284)
T PF09820_consen 127 ADSLKDLIEYLYEKYGKKVVLLIDEYDKPINDALSNG-----EYYEEMREFLRNFFSVLKKDNPYLRFAFITGILPISKE 201 (284)
T ss_pred HHHHHHHHHHHHHHhCCceEEEecCccHHHHHHhhhh-----HHHHHHHHHHHHHHHHhcccchhhhhhheeccchhhhc
Confidence 4444444444432 3689999999999776543322 122233332222222222211 23333322211 1
Q ss_pred ccc--------hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCC--CchhhHHHHHHHCCCCCcc
Q psy5642 100 RID--------KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPL--GEDVCVEELVRLTEGYSGA 157 (237)
Q Consensus 100 ~ld--------~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~--~~~~~~~~la~~t~g~s~~ 157 (237)
.+- -.+.. +|+..+=+ +.++-..+++.++..... ..+..++++-....||.-+
T Consensus 202 si~S~lNn~~~~s~~~--~f~~~~GF---T~~Ev~~ll~~~~~~~~~~~~~~~~~~~lk~wYdGY~F~ 264 (284)
T PF09820_consen 202 SIFSGLNNLEDISLDP--RFSEYFGF---TEEEVETLLKYYIENLAEEQDREELLEELKEWYDGYHFG 264 (284)
T ss_pred cCccccCCceecccch--hHhhhcCc---CHHHHHHHHHHHHHHhhhccchHHHHHHHHHHcCCcccC
Confidence 111 11122 44433323 789999999999765543 4678889999999999876
No 280
>COG1485 Predicted ATPase [General function prediction only]
Probab=59.24 E-value=10 Score=33.45 Aligned_cols=43 Identities=28% Similarity=0.530 Sum_probs=28.7
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC-CCcc
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR-PDRI 101 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~-~~~l 101 (237)
-+|.|||++.= +-....+++.|+..|=. ++|++|+|+|. |++|
T Consensus 132 ~vLCfDEF~Vt------------DI~DAMiL~rL~~~Lf~----~GV~lvaTSN~~P~~L 175 (367)
T COG1485 132 RVLCFDEFEVT------------DIADAMILGRLLEALFA----RGVVLVATSNTAPDNL 175 (367)
T ss_pred CEEEeeeeeec------------ChHHHHHHHHHHHHHHH----CCcEEEEeCCCChHHh
Confidence 49999998652 11114566667776655 58999999987 5544
No 281
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=58.96 E-value=35 Score=29.78 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=50.1
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCC-EEEEEEeCCCC----ccchhccCCCCcccEE
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNN-VTIVAATNRPD----RIDKALLRPGRLDRLI 115 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~vI~ttn~~~----~ld~al~r~gRf~~~i 115 (237)
.|-||+|+|+|.+- ..+++.|+..+......=+ ++|+|.+..++ .++.+..+ +.....
T Consensus 199 ~~lVIi~eD~EsF~---------------~~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~~~Lp~~~~~--~L~~~~ 261 (330)
T PF07034_consen 199 PPLVIIFEDFESFD---------------SQVLQDLILILSSYLDRLPFVLIFGIATSVEAFHSRLPRSTLS--LLRIKK 261 (330)
T ss_pred CCEEEEEcccccCC---------------HHHHHHHHHHHHhccCCcCEEEEEecCCChHHHHhhCCHHHHh--hcCceE
Confidence 48899999999883 3578888888877654445 66666666655 45666666 665443
Q ss_pred EecCC-CHHHHHHHHHHHHcC
Q psy5642 116 YVPLP-DDLTRAAILKIRLAR 135 (237)
Q Consensus 116 ~~~~P-~~~~R~~il~~~l~~ 135 (237)
|..+ ....-..+++..+-.
T Consensus 262 -F~~~~~~~~l~~v~~~~l~~ 281 (330)
T PF07034_consen 262 -FQLQSSSEILERVLEKVLLS 281 (330)
T ss_pred -EEeCChHHHHHHHHHHHhcC
Confidence 4444 455566666666543
No 282
>KOG0480|consensus
Probab=58.14 E-value=53 Score=31.53 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=35.0
Q ss_pred CEEEEEEeCCCC-------------ccchhccCCCCcccE-EEecCCCHHHHHHHHHHHHcC
Q psy5642 88 NVTIVAATNRPD-------------RIDKALLRPGRLDRL-IYVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 88 ~v~vI~ttn~~~-------------~ld~al~r~gRf~~~-i~~~~P~~~~R~~il~~~l~~ 135 (237)
+--|||++|-.. .|+++|.+ |||.. |-+.-|++..=..|-++.+..
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 455778887655 68899999 99954 467889988888887777754
No 283
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=57.97 E-value=49 Score=26.58 Aligned_cols=57 Identities=9% Similarity=-0.035 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+.. . +..+|.+|++++.++.
T Consensus 146 v~laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~---~-~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 146 LALARLWLSPAPLWLLDEPYANL-----------DLEGITLVNRMISAHLR---G-GGAALVTTHGAYAAPP 202 (214)
T ss_pred HHHHHHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHHh---C-CCEEEEEecChhhhhh
Confidence 34445555689999999954321 22233444445544422 2 2357778887776654
No 284
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=58 Score=29.59 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc-chh
Q psy5642 26 SERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI-DKA 104 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l-d~a 104 (237)
.+.++.+++..+...+|.+++||-|..+....-++...+ -...+.....|+..-.. .+-.++++|=......| -|.
T Consensus 153 aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGs-VsQVRe~t~~L~~~AK~--~~i~~fiVGHVTKeG~IAGPr 229 (456)
T COG1066 153 AETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGS-VSQVREVAAELMRLAKT--KNIAIFIVGHVTKEGAIAGPR 229 (456)
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCc-HHHHHHHHHHHHHHHHH--cCCeEEEEEEEcccccccCch
Confidence 477888999999999999999999999987654443221 12234555555554443 11236666665554433 233
Q ss_pred ccCCCCcccEEEe
Q psy5642 105 LLRPGRLDRLIYV 117 (237)
Q Consensus 105 l~r~gRf~~~i~~ 117 (237)
++. |-.|.+++|
T Consensus 230 vLE-HmVDtVlyF 241 (456)
T COG1066 230 VLE-HMVDTVLYF 241 (456)
T ss_pred hee-eeeeEEEEE
Confidence 332 234544444
No 285
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=57.59 E-value=62 Score=27.26 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 28 RCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 28 ~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+.=|-++.+|-...|.+|++||=-+ +.+...+ ..+...|.++... +..|+..|.+...+
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~-----------gvD~~~~---~~i~~lL~~l~~e-g~tIl~vtHDL~~v 202 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFT-----------GVDVAGQ---KEIYDLLKELRQE-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcc-----------cCCHHHH---HHHHHHHHHHHHC-CCEEEEEeCCcHHh
Confidence 3334566778888999999999311 1122223 3444444444444 66677778776644
No 286
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=57.31 E-value=62 Score=25.31 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=13.1
Q ss_pred HHHHHHhcCCeEEEEccc
Q psy5642 33 VFKRARQVSPSVIFFDEL 50 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDei 50 (237)
.+..|-...|.+|++||-
T Consensus 137 ~laral~~~p~llllDEP 154 (190)
T TIGR01166 137 AIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred HHHHHHhcCCCEEEEcCC
Confidence 344455567999999994
No 287
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=56.94 E-value=55 Score=25.99 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=30.9
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. .. +..+|.+|++++.++.
T Consensus 139 ~la~al~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 139 ALARLWLTRAPLWILDEPFTAI-----------DKQGVARLEALLAQHA---EQ-GGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHHHHhcCCCEEEEeCCCccC-----------CHHHHHHHHHHHHHHH---HC-CCEEEEEecChhhhcc
Confidence 3445555689999999953311 2222333444444432 21 3357778887776654
No 288
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=56.53 E-value=25 Score=29.44 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy5642 26 SERCVRDVFKRARQVSPSVIFFDELDSL 53 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~~P~il~iDeid~l 53 (237)
+.-..|-.|..|....|.||+|||+=+.
T Consensus 150 SGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 150 SGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 3556788999999999999999997544
No 289
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=56.49 E-value=60 Score=25.70 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 30 VRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
-+-.+..|-...|.+|++||--.-+ +......+..++..+. . .+..+|.+|+++..++.
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~L-----------D~~~~~~l~~~l~~~~---~-~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVAL-----------DELSLLTIITKIQEHR---A-KGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccc-----------CHHHHHHHHHHHHHHH---H-cCCEEEEEeCCchhccc
Confidence 3344556666789999999953321 2222333444444332 2 23456777777665543
No 290
>PF13175 AAA_15: AAA ATPase domain
Probab=56.31 E-value=28 Score=30.67 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=27.8
Q ss_pred EEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC
Q psy5642 44 VIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD 99 (237)
Q Consensus 44 il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 99 (237)
||+|||=+.-++. .....|+..|..+....++-||.||++|.
T Consensus 372 illidEPE~~LHp--------------~~q~~~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 372 ILLIDEPELHLHP--------------QAQRKFIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred EEEEeCccccCCH--------------HHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence 9999998876543 22334444444443345678999999875
No 291
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=56.08 E-value=32 Score=28.25 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=29.6
Q ss_pred HHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 36 RARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 36 ~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+|--+.|++++|||-=+ +-+-...+.+..++.++.+ .+..||.+|...+++
T Consensus 146 RAlvh~P~i~vlDEP~s-----------GLDi~~~r~~~dfi~q~k~----egr~viFSSH~m~Ev 196 (245)
T COG4555 146 RALVHDPSILVLDEPTS-----------GLDIRTRRKFHDFIKQLKN----EGRAVIFSSHIMQEV 196 (245)
T ss_pred HHHhcCCCeEEEcCCCC-----------CccHHHHHHHHHHHHHhhc----CCcEEEEecccHHHH
Confidence 44447899999999311 1122334444555554443 455678888776654
No 292
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=55.90 E-value=54 Score=27.57 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC-CCCEEEEEEeCCCCccchhccC
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP-LNNVTIVAATNRPDRIDKALLR 107 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vI~ttn~~~~ld~al~r 107 (237)
+-+|.+|--..|.+|++||-=+- -+-..+ ..|++.+.++.. .+.--+|..|.+++++++-+-.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~G-----------LDl~~r---e~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQG-----------LDLIAR---EQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHHhcCCCEEEecCcccc-----------CChHHH---HHHHHHHHHHhcCCCCceEEEEEcchhhcccccce
Confidence 34666777779999999994221 111222 223333333222 2334577778999998876554
No 293
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=55.35 E-value=19 Score=32.02 Aligned_cols=28 Identities=11% Similarity=0.455 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccc
Q psy5642 29 CVRDVFKRARQVSPSVIFFDELDSLAGE 56 (237)
Q Consensus 29 ~l~~~f~~a~~~~P~il~iDeid~l~~~ 56 (237)
.+..+++.+....|.+|+||.+..+...
T Consensus 146 ~le~I~~~i~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 146 NLEDILASIEELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred cHHHHHHHHHhcCCcEEEEcchHHhhcc
Confidence 4566777777789999999999998654
No 294
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=54.57 E-value=41 Score=28.51 Aligned_cols=65 Identities=20% Similarity=0.395 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhcc----
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALL---- 106 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~---- 106 (237)
..++..+..+.|.+|++||+-. ...+..++..+. .+..+|+||+.+ .+.....
T Consensus 184 ~~~~~~i~~~~P~villDE~~~-----------------~e~~~~l~~~~~-----~G~~vI~ttH~~-~~~~~~~r~~~ 240 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGR-----------------EEDVEALLEALH-----AGVSIIATAHGR-DVEDLYKRPVF 240 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCc-----------------HHHHHHHHHHHh-----CCCEEEEEechh-HHHHHHhChHH
Confidence 3466667778999999999410 223444444443 245688888753 3433332
Q ss_pred ----CCCCcccEEEec
Q psy5642 107 ----RPGRLDRLIYVP 118 (237)
Q Consensus 107 ----r~gRf~~~i~~~ 118 (237)
..+-|++.+.+.
T Consensus 241 ~~l~~~~~~~r~i~L~ 256 (270)
T TIGR02858 241 KELIENEAFERYVVLS 256 (270)
T ss_pred HHHHhcCceEEEEEEe
Confidence 245688877775
No 295
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=54.41 E-value=71 Score=25.32 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=30.1
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. .. +..+|.+|+++..++.
T Consensus 135 ~laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~---~~-g~tiii~sH~~~~~~~ 190 (201)
T cd03231 135 ALARLLLSGRPLWILDEPTTAL-----------DKAGVARFAEAMAGHC---AR-GGMVVLTTHQDLGLSE 190 (201)
T ss_pred HHHHHHhcCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHHH---hC-CCEEEEEecCchhhhh
Confidence 4555566689999999953321 1222233333333332 22 3356777777666554
No 296
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=54.04 E-value=39 Score=28.91 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=41.6
Q ss_pred cccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeC
Q psy5642 17 ELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATN 96 (237)
Q Consensus 17 ~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 96 (237)
.....+.+...+++.-+ .|-...|.++++||=-. +-+... ...+.+.|..+...++..|+.||+
T Consensus 132 ~~~~~lS~G~kqrl~ia--~aL~~~P~lliLDEPt~-----------GLDp~~---~~~~~~~l~~l~~~g~~tvlissH 195 (293)
T COG1131 132 KKVRTLSGGMKQRLSIA--LALLHDPELLILDEPTS-----------GLDPES---RREIWELLRELAKEGGVTILLSTH 195 (293)
T ss_pred cchhhcCHHHHHHHHHH--HHHhcCCCEEEECCCCc-----------CCCHHH---HHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34455555555555444 45556899999999311 122233 334444444444445578889999
Q ss_pred CCCccch
Q psy5642 97 RPDRIDK 103 (237)
Q Consensus 97 ~~~~ld~ 103 (237)
.++++..
T Consensus 196 ~l~e~~~ 202 (293)
T COG1131 196 ILEEAEE 202 (293)
T ss_pred cHHHHHH
Confidence 8887654
No 297
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=53.52 E-value=12 Score=29.33 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEccccccccc
Q psy5642 27 ERCVRDVFKRARQ-VSPSVIFFDELDSLAGE 56 (237)
Q Consensus 27 ~~~l~~~f~~a~~-~~P~il~iDeid~l~~~ 56 (237)
...+..+.+.+.. ..|.+|+||.+..+...
T Consensus 126 ~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 126 DEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred hHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 5567778888887 67999999999999876
No 298
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=53.39 E-value=84 Score=28.53 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHh--cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC--CCEEEEEEeCCCCcc-c
Q psy5642 28 RCVRDVFKRARQ--VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL--NNVTIVAATNRPDRI-D 102 (237)
Q Consensus 28 ~~l~~~f~~a~~--~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~v~vI~ttn~~~~l-d 102 (237)
..|+.+....+. ++.=+|+|||++.+..-+... ......+.+++.++..... .++.++.+.. |+-+ |
T Consensus 224 ~~Lk~L~~~lr~aGy~GLlI~lDE~e~l~kl~~~~-------~R~~~ye~lr~lidd~~~G~~~gL~~~~~gT-Pef~eD 295 (416)
T PF10923_consen 224 DFLKGLARFLRDAGYKGLLILLDELENLYKLRNDQ-------AREKNYEALRQLIDDIDQGRAPGLYFVFAGT-PEFFED 295 (416)
T ss_pred HHHHHHHHHHHHcCCCceEEEEechHHHHhcCChH-------HHHHHHHHHHHHHHHHhcCCCCceEEEEeeC-HHHhhC
Confidence 344444444443 355699999999997654221 1345667777777765432 2333333322 2222 1
Q ss_pred --------hhccC--------CCC----cccEEEecCCCHHHHHHHHHHHHc----CCC---CCchhhHHHHHHHCCCCC
Q psy5642 103 --------KALLR--------PGR----LDRLIYVPLPDDLTRAAILKIRLA----RSP---LGEDVCVEELVRLTEGYS 155 (237)
Q Consensus 103 --------~al~r--------~gR----f~~~i~~~~P~~~~R~~il~~~l~----~~~---~~~~~~~~~la~~t~g~s 155 (237)
++|.+ .++ ...+|.++..+.++-..++..... .++ .-++..+..++..+.|-.
T Consensus 296 ~rrGv~sY~AL~~RL~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~~r~ 375 (416)
T PF10923_consen 296 GRRGVYSYEALAQRLAEEFFADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVAGRL 375 (416)
T ss_pred ccccccccHHHHHHHhccccccccccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcc
Confidence 22221 112 246788888888888877765432 221 226788899998888888
Q ss_pred cccccc
Q psy5642 156 GAEQSL 161 (237)
Q Consensus 156 ~~Dl~~ 161 (237)
|++...
T Consensus 376 G~~~~~ 381 (416)
T PF10923_consen 376 GGDVFV 381 (416)
T ss_pred Cccccc
Confidence 888443
No 299
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=53.33 E-value=30 Score=34.14 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=56.9
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHh---cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQ---VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~---~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
..+++.++..+|.+.-.. ..-.+.-+|..... ..|.++++||....+... .....+..++..+.
T Consensus 599 ~~~~~~fdl~~l~~~~~~-~~~vl~~l~~~i~~~~~~~p~illlDE~~~~Ld~~----------~~~~~i~~~lk~~R-- 665 (811)
T PRK13873 599 SADVQAFEMEGLMGTKAA-APAVLSYLFHRIEDRFDGRPTLLILDEAWLFLDDP----------VFAAQLREWLKTLR-- 665 (811)
T ss_pred cCCEEEEEChhhccCchH-HHHHHHHHHHHHHHHhcCCCcEEEEcChhhhCCCH----------HHHHHHHHHHHHHH--
Confidence 346888888888764222 23444445554332 479999999988765421 11223333333332
Q ss_pred CCCCCEEEEEEeCCCCccc-----hhccCCCCcccEEEecCCC
Q psy5642 84 VPLNNVTIVAATNRPDRID-----KALLRPGRLDRLIYVPLPD 121 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld-----~al~r~gRf~~~i~~~~P~ 121 (237)
+. +..+|.+|.+++.+. .+++. -.+..|.++.|.
T Consensus 666 -K~-~~~~i~~TQ~~~d~~~s~~~~~il~--n~~t~i~L~~~~ 704 (811)
T PRK13873 666 -KK-NVSVIFATQSLADIDGSAIAPAIIE--SCPTRIFLPNER 704 (811)
T ss_pred -Hc-CCEEEEEECCHHHHhcCchHHHHHH--hCCeeEEcCCch
Confidence 32 445667777776554 34554 456778888775
No 300
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=52.51 E-value=16 Score=34.03 Aligned_cols=108 Identities=12% Similarity=0.094 Sum_probs=58.1
Q ss_pred CEEEEEEeCC---CCccchhccCCCCcccEEEecC--C-CHHHHHHH---HHHHHcCCCCC--chhhHHHHHHHCCCCCc
Q psy5642 88 NVTIVAATNR---PDRIDKALLRPGRLDRLIYVPL--P-DDLTRAAI---LKIRLARSPLG--EDVCVEELVRLTEGYSG 156 (237)
Q Consensus 88 ~v~vI~ttn~---~~~ld~al~r~gRf~~~i~~~~--P-~~~~R~~i---l~~~l~~~~~~--~~~~~~~la~~t~g~s~ 156 (237)
+|++||.-.. ....||.+.+ .|....+|.. | +.+....+ +..+..+..+. ....+..|.+....++.
T Consensus 388 KVILiG~~~~y~~L~~~D~dF~~--lFkv~aef~~~~~~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q 465 (509)
T PF13654_consen 388 KVILIGDRELYYLLYEYDPDFYK--LFKVKAEFDSEMPRTEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARLDQ 465 (509)
T ss_dssp EEEEEE-TTHHHHS-HHHHHHHH--HHSEEEE--SEEE--HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHCC-
T ss_pred EEEEEcCHHHHHHHHHhCHHHHh--CCCEEEEccccCCCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence 4778887655 5577899888 7765555442 2 33333333 33344333332 33444444444443422
Q ss_pred ccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhc
Q psy5642 157 AEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLV 219 (237)
Q Consensus 157 ~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~ 219 (237)
.-|.. +...|..++.+|...+-..+ ...|+.+|+.+|++..
T Consensus 466 ~kLsl--------------------~~~~l~~ll~EA~~~A~~~~--~~~I~~~~V~~Ai~~r 506 (509)
T PF13654_consen 466 DKLSL--------------------RFSWLADLLREANYWARKEG--AKVITAEHVEQAIEER 506 (509)
T ss_dssp SEEE----------------------HHHHHHHHHHHHHHHHHCT---SSB-HHHHHHHHHH-
T ss_pred CEeCC--------------------CHHHHHHHHHHHHHHHHHhC--CCccCHHHHHHHHHcc
Confidence 21111 11128899999999987766 4579999999999864
No 301
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=51.87 E-value=36 Score=27.29 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 28 RCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 28 ~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
..+.++++.+....|.+|++||.-.-.. ......+...++..+.. .+..+|.+|++++.+.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~glD----------~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~~ 152 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGTN----------SRERQAASAAVLKFLKN----KNTIGIISTHDLELAD 152 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCCC----------HHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHHH
Confidence 5678888877766899999999632110 01112233445555533 2456788888766543
No 302
>COG3899 Predicted ATPase [General function prediction only]
Probab=51.86 E-value=2.6e+02 Score=27.97 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=71.5
Q ss_pred HHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc--CCCCCCCEEEEEEeCCCCccchhccCCCCccc
Q psy5642 36 RARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD--GIVPLNNVTIVAATNRPDRIDKALLRPGRLDR 113 (237)
Q Consensus 36 ~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~--~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~ 113 (237)
.+....|-|+|+||++-. +..+-.++..++..+. .. ..+.|.. ..+. ...+.+...+...+ .
T Consensus 149 ~~~~~~plVi~leDlhWa------------D~~SL~lL~~lm~~~~~~~~-~~n~v~~-~h~~-~~~~~~~~~~~~~i-~ 212 (849)
T COG3899 149 FTAEEHPLVIVLEDLHWA------------DSASLKLLQLLMDRIAIGAY-RDNEVLL-LHPL-RPTLGEILKSATNI-T 212 (849)
T ss_pred HHhccCCeEEEEeccccc------------ChhHHHHHHHHHHhcchhhh-hcccccc-CCCc-cchhhHHhhcCCce-e
Confidence 344456999999998765 2223344555555444 11 1112222 2222 22333444443334 5
Q ss_pred EEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHhhh
Q psy5642 114 LIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKK 168 (237)
Q Consensus 114 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a~~ 168 (237)
.|.+.+.+..+-..++...+...........+.+.++|.| .|-=+..+.+....
T Consensus 213 ~I~L~PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~G-nPfFi~e~lk~l~~ 266 (849)
T COG3899 213 TITLAPLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKG-NPFFIEEFLKALYE 266 (849)
T ss_pred EEecCcCchhhHHHHHHHHhCCcccccchHHHHHHHHhcC-CCccHHHHHHHHHh
Confidence 7999999999999999999987555567788889999999 77765555555443
No 303
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=51.80 E-value=51 Score=26.24 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+..|-...|.+|++||--.- -+......+..++..+.. .+..||.+|++++.+
T Consensus 146 la~al~~~p~llllDEP~~~-----------LD~~~~~~l~~~l~~~~~----~~~tvi~~sh~~~~~ 198 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSA-----------LDPELVGEVLDVMKDLAE----EGMTMVVVTHEMGFA 198 (213)
T ss_pred HHHHHhcCCCEEEEeCCccC-----------CCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHH
Confidence 44455567999999995331 122233444445544432 133466677776544
No 304
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=51.46 E-value=46 Score=26.62 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHH-HHHhcCCCCCCCEEEEEEeCCCCccchh
Q psy5642 26 SERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQM-LTEMDGIVPLNNVTIVAATNRPDRIDKA 104 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~l-l~~l~~~~~~~~v~vI~ttn~~~~ld~a 104 (237)
+++..-.+.... ...|.||++||+-+-+-. ...+-++.+ ..+.. ..++.|+..|.++++ +
T Consensus 137 GE~QriAliR~L-q~~P~ILLLDE~TsALD~-----------~nkr~ie~mi~~~v~----~q~vAv~WiTHd~dq---a 197 (223)
T COG4619 137 GEKQRIALIRNL-QFMPKILLLDEITSALDE-----------SNKRNIEEMIHRYVR----EQNVAVLWITHDKDQ---A 197 (223)
T ss_pred hHHHHHHHHHHh-hcCCceEEecCchhhcCh-----------hhHHHHHHHHHHHhh----hhceEEEEEecChHH---H
Confidence 345444444443 447999999998654321 113333433 33343 257889999987653 3
Q ss_pred ccCCCCcccEEEecC
Q psy5642 105 LLRPGRLDRLIYVPL 119 (237)
Q Consensus 105 l~r~gRf~~~i~~~~ 119 (237)
++ -|++.|.+-.
T Consensus 198 ~r---ha~k~itl~~ 209 (223)
T COG4619 198 IR---HADKVITLQP 209 (223)
T ss_pred hh---hhheEEEecc
Confidence 32 5677776654
No 305
>PRK07952 DNA replication protein DnaC; Validated
Probab=51.02 E-value=29 Score=28.99 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=39.6
Q ss_pred eEEEEEecccccccccCh---HHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 8 TEVVESIGPELFRKYVGE---SERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~---~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
..++.++..+++....+. .......+++... .+.+|+|||++.... +.+...++..+++.=..
T Consensus 128 ~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~----------s~~~~~~l~~Ii~~Ry~-- 193 (244)
T PRK07952 128 KSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE----------SRYEKVIINQIVDRRSS-- 193 (244)
T ss_pred CeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC----------CHHHHHHHHHHHHHHHh--
Confidence 455666666666533321 1112233444433 578999999977531 22334455555554211
Q ss_pred CCCCEEEEEEeCCC
Q psy5642 85 PLNNVTIVAATNRP 98 (237)
Q Consensus 85 ~~~~v~vI~ttn~~ 98 (237)
++..+|.|||..
T Consensus 194 --~~~~tiitSNl~ 205 (244)
T PRK07952 194 --SKRPTGMLTNSN 205 (244)
T ss_pred --CCCCEEEeCCCC
Confidence 234577788863
No 306
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=50.98 E-value=76 Score=26.50 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=47.6
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
.+++|+|||+-. . ....+.+..+.. . -..-++.+|..+-..-.+|+.+|. -.+..+-++ -
T Consensus 98 ~~~LiIlDD~~~---~----------~~k~~~l~~~~~---~-gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~ 157 (241)
T PF04665_consen 98 PRFLIILDDLGD---K----------KLKSKILRQFFN---N-GRHYNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-N 157 (241)
T ss_pred CCeEEEEeCCCC---c----------hhhhHHHHHHHh---c-ccccceEEEEEeeecccCCHHHhh--cceEEEEec-C
Confidence 378999999622 0 011233333433 1 122368899999999999999988 777777665 4
Q ss_pred CHHHHHHHHHHHHc
Q psy5642 121 DDLTRAAILKIRLA 134 (237)
Q Consensus 121 ~~~~R~~il~~~l~ 134 (237)
+..+...|++.+..
T Consensus 158 s~~dl~~i~~~~~~ 171 (241)
T PF04665_consen 158 SKRDLENIYRNMNI 171 (241)
T ss_pred cHHHHHHHHHhccc
Confidence 66777666666543
No 307
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=50.97 E-value=54 Score=25.56 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=29.5
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. . +..+|.+|++++.+
T Consensus 114 ~la~al~~~p~llllDEP~~~L-----------D~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~~~ 167 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGV-----------DVGAKAEIYRLIRELAD---A-GKAVLLISSELDEL 167 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCC-----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 3555556689999999953321 22233444444544432 1 34566677765433
No 308
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=50.48 E-value=55 Score=26.36 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-.+..|-...|.+|++||--.= -+......+..++..+.. .+..+|.+|++++.++
T Consensus 133 v~laral~~~p~llllDEP~~~-----------LD~~~~~~l~~~L~~~~~----~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNG-----------LDPIGIQELRELIRSFPE----QGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccC-----------CCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHHH
Confidence 3455555668999999995331 122223344444444422 2345777777766554
No 309
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=50.47 E-value=53 Score=26.55 Aligned_cols=54 Identities=9% Similarity=0.186 Sum_probs=30.5
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.- -+......+..++..+.. .+..+|.+|++++.+
T Consensus 143 ~la~al~~~p~llllDEPt~~-----------LD~~~~~~~~~~l~~~~~----~~~tii~~sH~~~~~ 196 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAG-----------VDPIAVQDIQKIIKILKD----RGIGVLITDHNVRET 196 (232)
T ss_pred HHHHHHhcCCCEEEecCCccc-----------CCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHH
Confidence 455555668999999994331 122233444445554432 234577777776544
No 310
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=50.38 E-value=24 Score=26.80 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=33.7
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPD 121 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~ 121 (237)
..+|++||++.+.... . ......++..+ .....+++.|++-+...+..... .+...+.+....
T Consensus 130 ~~~iIiDE~h~~~~~~---~--------~~~~~~~~~~~----~~~~~~v~~saT~~~~~~~~~~~--~~~~~~~~~~~~ 192 (201)
T smart00487 130 VDLVILDEAHRLLDGG---F--------GDQLEKLLKLL----PKNVQLLLLSATPPEEIENLLEL--FLNDPVFIDVGP 192 (201)
T ss_pred CCEEEEECHHHHhcCC---c--------HHHHHHHHHhC----CccceEEEEecCCchhHHHHHHH--hcCCCEEEeCCc
Confidence 4589999999986520 0 12333444444 22334455555544556665555 555555555443
No 311
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=50.31 E-value=46 Score=27.30 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
-+.+..+++.|. .|++++|||+..=.. ......+...++..+... .+..+|.+|.+.+-.
T Consensus 98 ~~~~~~il~~~~--~~sLvllDE~~~gT~----------~~d~~~i~~~il~~l~~~---~~~~~i~~TH~~~l~ 157 (222)
T cd03287 98 LSETSHILSNCT--SRSLVILDELGRGTS----------THDGIAIAYATLHYLLEE---KKCLVLFVTHYPSLG 157 (222)
T ss_pred HHHHHHHHHhCC--CCeEEEEccCCCCCC----------hhhHHHHHHHHHHHHHhc---cCCeEEEEcccHHHH
Confidence 344556665554 589999999743111 011122334455555442 345677788887654
No 312
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=50.26 E-value=53 Score=26.07 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=29.0
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.- -+......+..++..+.. . +..+|.+|++++.+
T Consensus 136 ~laral~~~p~llllDEPt~~-----------LD~~~~~~l~~~l~~~~~---~-~~tii~~sH~~~~~ 189 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSG-----------LDYKNMERVGELIRELAA---Q-GKAVIVITHDYEFL 189 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCcc-----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 344555568999999994331 122223334444444422 2 34567777766543
No 313
>PRK06526 transposase; Provisional
Probab=50.17 E-value=21 Score=29.92 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=11.6
Q ss_pred CCeEEEEccccccc
Q psy5642 41 SPSVIFFDELDSLA 54 (237)
Q Consensus 41 ~P~il~iDeid~l~ 54 (237)
.+.+|+|||++.+.
T Consensus 159 ~~dlLIIDD~g~~~ 172 (254)
T PRK06526 159 RYPLLIVDEVGYIP 172 (254)
T ss_pred cCCEEEEcccccCC
Confidence 46899999998764
No 314
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=50.01 E-value=36 Score=27.55 Aligned_cols=55 Identities=22% Similarity=0.363 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEe
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAAT 95 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 95 (237)
.+.=|-...+|-++.|.+++|||=-+- ..-+++.+.|..|..+...++-+|+.|-
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSA--------------LDPElVgEVLkv~~~LAeEgrTMv~VTH 210 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSA--------------LDPELVGEVLKVMQDLAEEGRTMVVVTH 210 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCccc--------------CCHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 445566778888999999999993221 1146788888888887777888787774
No 315
>KOG0479|consensus
Probab=49.97 E-value=31 Score=32.82 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=39.9
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh------cCCCC--CCCEEEEEEeCCCC-------------c
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM------DGIVP--LNNVTIVAATNRPD-------------R 100 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l------~~~~~--~~~v~vI~ttn~~~-------------~ 100 (237)
..|+.|||+|...-- -+..+.+.+.+= .++.. +.+.-|+|++|-.+ .
T Consensus 399 RGVVCIDEFDKMsDi------------DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIg 466 (818)
T KOG0479|consen 399 RGVVCIDEFDKMSDI------------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIG 466 (818)
T ss_pred CceEEehhcccccch------------hHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccC
Confidence 569999999987321 123333444331 12222 34688999999766 6
Q ss_pred cchhccCCCCcccEEEe
Q psy5642 101 IDKALLRPGRLDRLIYV 117 (237)
Q Consensus 101 ld~al~r~gRf~~~i~~ 117 (237)
|+.++++ |||..+-+
T Consensus 467 LpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 467 LPDSLLS--RFDLLFVV 481 (818)
T ss_pred CcHHHHh--hhcEEEEE
Confidence 8999999 99975533
No 316
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=49.96 E-value=58 Score=25.90 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. . +..+|.+|++++.+
T Consensus 146 ~laral~~~p~llllDEPt~~L-----------D~~~~~~~~~~l~~~~~---~-~~tiiivtH~~~~~ 199 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNL-----------DPDTTWEIMNLLKKINK---A-GTTVVVATHAKELV 199 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcC-----------CHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 3445556689999999953321 22223344444444422 2 34567777765543
No 317
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=49.94 E-value=57 Score=26.06 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=29.3
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.- -+......+..++..+. .. +..||.+|++++.+
T Consensus 148 ~laral~~~p~llllDEPt~~-----------LD~~~~~~l~~~l~~~~---~~-~~tii~vsH~~~~~ 201 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGN-----------LDPELSRDIMRLFEEFN---RR-GTTVLVATHDINLV 201 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCc-----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 445555668999999994331 12222333444444442 22 34567777776543
No 318
>KOG1576|consensus
Probab=49.68 E-value=1.7e+02 Score=25.18 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=87.8
Q ss_pred EEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEE
Q psy5642 12 ESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTI 91 (237)
Q Consensus 12 ~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~v 91 (237)
+.+..+.|+-........+++-+++.+..--.||.+-|+|-. ++ ..-++++-+..|+.+...+++-+
T Consensus 108 ~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefa-p~------------ld~vl~Etlp~Le~lk~~Gk~Rf 174 (342)
T KOG1576|consen 108 ELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFA-PN------------LDIVLNETLPALEELKQEGKIRF 174 (342)
T ss_pred ccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccc-cc------------ccHHHHHHHHHHHHHHhcCceeE
Confidence 344444454444444555666666665544567777777653 11 13578888899998888899999
Q ss_pred EEEeCCCCccchhc--cCCCCcccEEEecC--CCHHHHHHHHHHHHcCC-CCC--chhhHHHHHHHCCCCCcccccchhH
Q psy5642 92 VAATNRPDRIDKAL--LRPGRLDRLIYVPL--PDDLTRAAILKIRLARS-PLG--EDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 92 I~ttn~~~~ld~al--~r~gRf~~~i~~~~--P~~~~R~~il~~~l~~~-~~~--~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
||.|..|=++=..+ +.+||.|-++..-. .+...-...++.+..+. .+. ....+.-| |+ +
T Consensus 175 iGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLL---t~----~------- 240 (342)
T KOG1576|consen 175 IGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLL---TN----Q------- 240 (342)
T ss_pred eeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHHHh---hc----C-------
Confidence 99999886643333 34788876552211 12333334444433221 110 11111111 10 0
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENN 201 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~ 201 (237)
--.+++++.+.+.+++..|+..|-.++
T Consensus 241 ----------gp~~wHPaS~Elk~~a~~aa~~Cq~rn 267 (342)
T KOG1576|consen 241 ----------GPPPWHPASDELKEAAKAAAEYCQSRN 267 (342)
T ss_pred ----------CCCCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 123677888889999999988887665
No 319
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.97 E-value=29 Score=36.02 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=52.1
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC--ccchhccCCCCcccEEEecCC
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD--RIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~--~ld~al~r~gRf~~~i~~~~P 120 (237)
.+|+|||+..|+.... +. +..++..|-..-..-+|.+|.+|.+|+ .|...|+. -|...|-|..-
T Consensus 1142 IVVIIDE~AdLm~~~~-----------ke-vE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVs 1207 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG-----------KK-VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVS 1207 (1355)
T ss_pred EEEEEcChHHHHhhhh-----------HH-HHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcC
Confidence 4899999988865311 11 233344443332334799999999987 57777777 78888999999
Q ss_pred CHHHHHHHHH
Q psy5642 121 DDLTRAAILK 130 (237)
Q Consensus 121 ~~~~R~~il~ 130 (237)
+..+-..||-
T Consensus 1208 S~~DSrtILd 1217 (1355)
T PRK10263 1208 SKIDSRTILD 1217 (1355)
T ss_pred CHHHHHHhcC
Confidence 9988888884
No 320
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=48.93 E-value=13 Score=34.42 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=49.1
Q ss_pred CCceEEEEEeccccccccc-ChHHHHHHHHHHHHHhcC--------CeEEEEccccccccccCCCCCCCCCchHHHHHHH
Q psy5642 5 GGLTEVVESIGPELFRKYV-GESERCVRDVFKRARQVS--------PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQ 75 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~-g~~~~~l~~~f~~a~~~~--------P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ 75 (237)
...-||+.++|.-+-.... .|--...+-+|.-|.... ...||+|||-.+-. .+...
T Consensus 272 R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL---------------~lQaK 336 (550)
T COG3604 272 RRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL---------------ALQAK 336 (550)
T ss_pred ccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH---------------HHHHH
Confidence 4567899999965421100 011111223444444322 45999999977621 23344
Q ss_pred HHHHhcC-----CCCCC----CEEEEEEeCCCCccchhccCCCCcc
Q psy5642 76 MLTEMDG-----IVPLN----NVTIVAATNRPDRIDKALLRPGRLD 112 (237)
Q Consensus 76 ll~~l~~-----~~~~~----~v~vI~ttn~~~~ld~al~r~gRf~ 112 (237)
||..|++ +-.+. .|-||++||+ ++-.+++. |+|-
T Consensus 337 LLRvLQegEieRvG~~r~ikVDVRiIAATNR--DL~~~V~~-G~FR 379 (550)
T COG3604 337 LLRVLQEGEIERVGGDRTIKVDVRVIAATNR--DLEEMVRD-GEFR 379 (550)
T ss_pred HHHHHhhcceeecCCCceeEEEEEEEeccch--hHHHHHHc-Ccch
Confidence 5554432 22222 3899999995 66667765 7774
No 321
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=48.74 E-value=58 Score=27.99 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=33.6
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
.+..|-.+.|.+|++||--. +-+...+..+..++..+.. .+..||.+|++.+.+..
T Consensus 148 ~la~aL~~~P~lllLDEPt~-----------gLD~~~~~~l~~~l~~l~~----~g~till~sH~l~e~~~ 203 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTT-----------GLDPQARHLMWERLRSLLA----RGKTILLTTHFMEEAER 203 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCc-----------CCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHHHHH
Confidence 35556667899999999422 1123334444455555432 24568888888776643
No 322
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=48.68 E-value=52 Score=27.92 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+-.+..|-...|.+|++||--.-+ +...+..+..++..+.. .+..||.+|++++.+.
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gL-----------D~~~~~~l~~~l~~l~~----~g~til~vtHd~~~~~ 208 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGL-----------DPKARIEMMQLFESIHQ----SGQTVVLVTHLMDDVA 208 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCC-----------CHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHHH
Confidence 344556666789999999953321 22234444445554432 2446777888766443
No 323
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=48.56 E-value=81 Score=26.21 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeC
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATN 96 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 96 (237)
.+.=|--..+|.+..|.||++||-=+- -+..+..-+.+++..+.. .--+||.|=|
T Consensus 153 GQQQRLcIARalAv~PeVlLmDEPtSA-----------LDPIsT~kIEeLi~eLk~----~yTIviVTHn 207 (253)
T COG1117 153 GQQQRLCIARALAVKPEVLLMDEPTSA-----------LDPISTLKIEELITELKK----KYTIVIVTHN 207 (253)
T ss_pred hHHHHHHHHHHHhcCCcEEEecCcccc-----------cCchhHHHHHHHHHHHHh----ccEEEEEeCC
Confidence 334455667778889999999994321 123334556777777774 2345666644
No 324
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=48.24 E-value=34 Score=28.68 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcc
Q psy5642 29 CVRDVFKRARQVSPSVIFFDE 49 (237)
Q Consensus 29 ~l~~~f~~a~~~~P~il~iDe 49 (237)
+=|-.+.+|-...|-||++||
T Consensus 136 rQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 136 RQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred HHHHHHHHHHhcCCCEEEEcC
Confidence 334567777788999999999
No 325
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=48.08 E-value=30 Score=26.43 Aligned_cols=96 Identities=10% Similarity=0.204 Sum_probs=46.6
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeC-CCCccchhccC-CCCcccEEEecC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATN-RPDRIDKALLR-PGRLDRLIYVPL 119 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn-~~~~ld~al~r-~gRf~~~i~~~~ 119 (237)
..+|++.+...+ .+. ........|...+.+.. ..+++|..+. ..+.=.. +.. -..-..++.++.
T Consensus 58 ~klvii~~~~~l-~~~----------~~~~~~~~l~~~l~~~~--~~~~lii~~~~~~~~~~k-~~k~l~~~~~~~~~~~ 123 (172)
T PF06144_consen 58 KKLVIIKNAPFL-KDK----------LKKKEIKALIEYLSNPP--PDCILIIFSEEKLDKRKK-LYKALKKQAIVIECKK 123 (172)
T ss_dssp EEEEEEE------TT-----------S-TTHHHHHHHHTTT----SSEEEEEEES-S--HHHH-HHHHHTTTEEEEEE--
T ss_pred CeEEEEecCccc-ccc----------ccHHHHHHHHHHHhCCC--CCEEEEEEeCCchhhhhh-HHHHHhcccceEEecC
Confidence 358888887666 110 01234667777777744 3444444444 3331111 111 002335689999
Q ss_pred CCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHC
Q psy5642 120 PDDLTRAAILKIRLARSPLG-EDVCVEELVRLT 151 (237)
Q Consensus 120 P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t 151 (237)
|+..+...+++..++..+.. ....+..|+..+
T Consensus 124 ~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~ 156 (172)
T PF06144_consen 124 PKEQELPRWIKERAKKNGLKIDPDAAQYLIERV 156 (172)
T ss_dssp --TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 99999999999999887765 455566666654
No 326
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=48.08 E-value=63 Score=25.83 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+.. . +..+|.+|++++.+
T Consensus 145 v~laral~~~p~illlDEPt~~L-----------D~~~~~~l~~~l~~~~~---~-~~tii~~tH~~~~~ 199 (218)
T cd03266 145 VAIARALVHDPPVLLLDEPTTGL-----------DVMATRALREFIRQLRA---L-GKCILFSTHIMQEV 199 (218)
T ss_pred HHHHHHHhcCCCEEEEcCCCcCC-----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 34455556689999999954321 22223344444444422 2 34577777766543
No 327
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=48.02 E-value=59 Score=25.84 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=28.8
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. . +..||.+|++++.+
T Consensus 144 ~laral~~~p~llllDEPt~~L-----------D~~~~~~~~~~l~~~~~---~-~~tvi~~sH~~~~~ 197 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGL-----------DPAGRRELLELLKKLKA---E-GKTIIIVTHDLDLL 197 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 3445555689999999953311 22223333344443322 2 34577777765543
No 328
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.01 E-value=72 Score=25.36 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=13.7
Q ss_pred HHHHHHhcCCeEEEEccc
Q psy5642 33 VFKRARQVSPSVIFFDEL 50 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDei 50 (237)
.+..|-...|.+|++||-
T Consensus 128 ~laral~~~p~llllDEP 145 (202)
T cd03233 128 SIAEALVSRASVLCWDNS 145 (202)
T ss_pred HHHHHHhhCCCEEEEcCC
Confidence 455566668999999994
No 329
>PRK08181 transposase; Validated
Probab=48.00 E-value=15 Score=31.15 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=37.4
Q ss_pred eEEEEEecccccccccCh-HHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 8 TEVVESIGPELFRKYVGE-SERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~-~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
..++++...+|+...... ....+.+.+... ..+.+|+|||++.+..+ ......+-.+++.-.+ .
T Consensus 135 ~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~----------~~~~~~Lf~lin~R~~---~ 199 (269)
T PRK08181 135 WRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD----------QAETSVLFELISARYE---R 199 (269)
T ss_pred CceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC----------HHHHHHHHHHHHHHHh---C
Confidence 445566666665543211 112233334333 25689999999876432 1123344455554332 1
Q ss_pred CCEEEEEEeCCC
Q psy5642 87 NNVTIVAATNRP 98 (237)
Q Consensus 87 ~~v~vI~ttn~~ 98 (237)
+ -+|.|||.+
T Consensus 200 -~-s~IiTSN~~ 209 (269)
T PRK08181 200 -R-SILITANQP 209 (269)
T ss_pred -C-CEEEEcCCC
Confidence 2 367777764
No 330
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=47.98 E-value=63 Score=25.74 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=28.6
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.- -+...+..+..++..+.. . +..+|.+|++++.+
T Consensus 147 ~la~al~~~p~lllLDEPt~~-----------LD~~~~~~l~~~l~~~~~---~-~~tii~~tH~~~~~ 200 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEPTGN-----------LDPDLSERILDLLKRLNK---R-GTTVIVATHDLSLV 200 (214)
T ss_pred HHHHHHhCCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 344455567999999995332 122223344444444422 2 33566677765543
No 331
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=47.39 E-value=62 Score=26.73 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+..|-...|.+|++||--.= -+......+..++..+.. . +..||.+|++++.+.
T Consensus 149 laral~~~p~llllDEP~~~-----------LD~~~~~~l~~~l~~l~~---~-~~tiii~tH~~~~~~ 202 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTY-----------LDINHQVELMRLMRELNT---Q-GKTVVTVLHDLNQAS 202 (255)
T ss_pred HHHHHhcCCCEEEEcCCccc-----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEECCHHHHH
Confidence 44455567999999995331 122223344444444322 2 345777777776554
No 332
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=47.27 E-value=65 Score=25.41 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc--cchhcc
Q psy5642 29 CVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR--IDKALL 106 (237)
Q Consensus 29 ~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~--ld~al~ 106 (237)
..-..+.+|... -.+|+|||+-.+--. ...|...++..-.+++. +|+|..+-+. +=+.++
T Consensus 89 i~~~al~rA~~~-aDvIIIDEIGpMElk----------------s~~f~~~ve~vl~~~kp-liatlHrrsr~P~v~~ik 150 (179)
T COG1618 89 IAIPALRRALEE-ADVIIIDEIGPMELK----------------SKKFREAVEEVLKSGKP-LIATLHRRSRHPLVQRIK 150 (179)
T ss_pred HhHHHHHHHhhc-CCEEEEecccchhhc----------------cHHHHHHHHHHhcCCCc-EEEEEecccCChHHHHhh
Confidence 344444555543 479999999765221 12333333333222333 7777765433 223444
Q ss_pred CCCCcccEEEecCCCHHHHHHHHHHHHcC
Q psy5642 107 RPGRLDRLIYVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 107 r~gRf~~~i~~~~P~~~~R~~il~~~l~~ 135 (237)
+ +++..+.+ +.+.|-.|+...+..
T Consensus 151 ~--~~~v~v~l---t~~NR~~i~~~Il~~ 174 (179)
T COG1618 151 K--LGGVYVFL---TPENRNRILNEILSV 174 (179)
T ss_pred h--cCCEEEEE---ccchhhHHHHHHHHH
Confidence 5 56554444 555555777766643
No 333
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=47.21 E-value=33 Score=27.60 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=25.3
Q ss_pred CEEEEEEeCCCCcc-chhccCCCCcccEEEecC------CC----HHHHHHHHHHH
Q psy5642 88 NVTIVAATNRPDRI-DKALLRPGRLDRLIYVPL------PD----DLTRAAILKIR 132 (237)
Q Consensus 88 ~v~vI~ttn~~~~l-d~al~r~gRf~~~i~~~~------P~----~~~R~~il~~~ 132 (237)
..++|||||..+-| |+.=-| ||= .|++.. |. ...+.+||-..
T Consensus 140 ~~~figTtN~~~~L~D~TGnR--Rf~-~v~v~~~i~~~~~~~~~~~~~~~qlwAeA 192 (198)
T PF05272_consen 140 RAVFIGTTNDDDFLKDPTGNR--RFW-PVEVSKRIDIKSIDIDLLEEDRDQLWAEA 192 (198)
T ss_pred eEEEEeccCCcceeeCCCCCe--EEE-EEEEcCcccccccchhhhHHHHHHHHHHH
Confidence 47899999997744 455556 772 344443 22 23466666543
No 334
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=47.03 E-value=59 Score=26.84 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
-+.+..++..+. ..++|+|||+-.= . .......+...++..+... .+..+|.||+..+-
T Consensus 110 ~~~~~~il~~~~--~~sLvliDE~g~g-----T-----~~~eg~ai~~aile~l~~~---~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 110 MKRLSSILRNAT--EKSLVLIDELGRG-----T-----NPEEGIAIAIAILEYLLEK---SGCFVIIATHFHEL 168 (235)
T ss_dssp HHHHHHHHHH----TTEEEEEESTTTT-----S-----SHHHHHHHHHHHHHHHHHT---TT-EEEEEES-GGG
T ss_pred HHHHHhhhhhcc--cceeeecccccCC-----C-----ChhHHHHHHHHHHHHHHHh---ccccEEEEeccchh
Confidence 566677777665 4689999997321 1 1122234555566666541 24568888888753
No 335
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=46.65 E-value=48 Score=32.83 Aligned_cols=98 Identities=19% Similarity=0.174 Sum_probs=52.8
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHh---cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQ---VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~---~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.++.++...|.+.......-.+.-+|.+... ..|.++++||....+.+. .....+..++..+. +
T Consensus 617 ~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~----------~~~~~i~~~lk~~R---K 683 (818)
T PRK13830 617 AFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHP----------VFRDKIREWLKVLR---K 683 (818)
T ss_pred ceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCH----------HHHHHHHHHHHHHH---H
Confidence 4555666666542111122344444444433 479999999988776421 11223333333332 2
Q ss_pred CCCEEEEEEeCCCCccc-----hhccCCCCcccEEEecCCCH
Q psy5642 86 LNNVTIVAATNRPDRID-----KALLRPGRLDRLIYVPLPDD 122 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld-----~al~r~gRf~~~i~~~~P~~ 122 (237)
. +..+|.+|.+++.+. .++.. -.+..|.++.|..
T Consensus 684 ~-~~~vil~Tq~~~d~~~s~~a~~i~~--~~~t~i~L~n~~a 722 (818)
T PRK13830 684 A-NCAVVLATQSISDAERSGIIDVLKE--SCPTKICLPNGAA 722 (818)
T ss_pred c-CCEEEEEeCCHHHHhcCchHHHHHh--cCCeEEECCCccc
Confidence 2 456777777777654 34444 5677787876653
No 336
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=46.51 E-value=37 Score=29.61 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCC--CchHHHHHHHHHHHhcCCCCCCCEEEEEEeC
Q psy5642 26 SERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGG--SNVQERVLAQMLTEMDGIVPLNNVTIVAATN 96 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 96 (237)
.+..+..+....+...+.+|+||-+-.+.+...-.+..+. .....+.++.++..|.......++.+|.|.-
T Consensus 118 ~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 118 GEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred HHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 3445555555556678999999999998864221111110 1123455566666666655556777777744
No 337
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=46.15 E-value=62 Score=25.92 Aligned_cols=90 Identities=11% Similarity=0.008 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc-----h
Q psy5642 29 CVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID-----K 103 (237)
Q Consensus 29 ~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld-----~ 103 (237)
.+..+..... ..+.+|+||-+-.++........ ......+.+..++..|..+....++.||.|..-..... |
T Consensus 92 ~~~~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~~--~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p 168 (218)
T cd01394 92 AIQETETFAD-EKVDLVVVDSATALYRLELGDDD--TTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRP 168 (218)
T ss_pred HHHHHHHHHh-cCCcEEEEechHHhhhHHhcCcc--chHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccc
Confidence 3334443333 24899999999998642211111 01112233344444444443445677777755432222 2
Q ss_pred hccC--CCCcccEEEecCCC
Q psy5642 104 ALLR--PGRLDRLIYVPLPD 121 (237)
Q Consensus 104 al~r--~gRf~~~i~~~~P~ 121 (237)
..-+ .+..|.+|.+....
T Consensus 169 ~~g~~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 169 LGGHTLEHWSKVILRLEKLR 188 (218)
T ss_pred cCCcchhcceeEEEEEEEcC
Confidence 2100 12457788887765
No 338
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=46.04 E-value=31 Score=26.07 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=20.3
Q ss_pred HHHHHHHHHH----HHHhcCCeEEEEccccccccc
Q psy5642 26 SERCVRDVFK----RARQVSPSVIFFDELDSLAGE 56 (237)
Q Consensus 26 ~~~~l~~~f~----~a~~~~P~il~iDeid~l~~~ 56 (237)
++.+|..+.+ ..+.....+|+||-+|.|.-.
T Consensus 56 ~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~ 90 (136)
T PF05763_consen 56 SPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILE 90 (136)
T ss_pred CchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHH
Confidence 3444444444 344445779999999998764
No 339
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=45.96 E-value=66 Score=26.59 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=30.7
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.= -+......+..++..+.. .+..+|.+|++++.++
T Consensus 162 ~laral~~~p~llllDEPt~~-----------LD~~~~~~l~~~l~~l~~----~g~tiiivsH~~~~~~ 216 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPTSA-----------LDPELVGEVLRIMQQLAE----EGKTMVVVTHEMGFAR 216 (257)
T ss_pred HHHHHHhcCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHH
Confidence 445555668999999995321 122223444444444432 2445677777766554
No 340
>KOG3928|consensus
Probab=45.84 E-value=2.3e+02 Score=25.85 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhc-----CCeEEEEcccccccc----ccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEe-
Q psy5642 26 SERCVRDVFKRARQV-----SPSVIFFDELDSLAG----ERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAAT- 95 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~-----~P~il~iDeid~l~~----~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt- 95 (237)
+...+..++.+.+.. -|-++.||++-.++. .+.....- ....-.+...+...+.+-+..+ .++.++.
T Consensus 295 a~~~vg~llrelk~~s~~~~~kVLvaID~~n~l~~~T~~k~~~~~~v--~P~dl~li~~~~~~i~ndwt~g-~vi~a~s~ 371 (461)
T KOG3928|consen 295 APDAVGILLRELKRLSVQSKVKVLVAIDNFNSLFTVTAYKSEDNKPV--TPLDLTLIHLLRDIISNDWTFG-SVIMAISG 371 (461)
T ss_pred chHHHHHHHHHHHHhhhhcCccEEEEEcCcchheeeeeeeccccCcC--CchhhhHHHHHHHHHhcccccc-eEEEEecc
Confidence 344455555555443 377999999999987 33322221 1222456667777777766544 4444443
Q ss_pred -CCCCcc---------chhccCCCCcc-----cEEEecCCCHHHHHHHHHHHHcCCCCC----chhhHHHHHHHCCCCCc
Q psy5642 96 -NRPDRI---------DKALLRPGRLD-----RLIYVPLPDDLTRAAILKIRLARSPLG----EDVCVEELVRLTEGYSG 156 (237)
Q Consensus 96 -n~~~~l---------d~al~r~gRf~-----~~i~~~~P~~~~R~~il~~~l~~~~~~----~~~~~~~la~~t~g~s~ 156 (237)
.-+... +..+..+--|| ..|+++.-+.++-..++.+|++..-+. .+..+.++--.+ +..|
T Consensus 372 ~~~~~a~~h~gv~~y~pr~llg~egfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP 450 (461)
T KOG3928|consen 372 VTTPSAFGHLGVAPYVPRKLLGEEGFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNP 450 (461)
T ss_pred cccchhccccccccCCchHhcCccchhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCH
Confidence 122211 22222222343 236777889999999999999765332 344555555444 4455
Q ss_pred cc
Q psy5642 157 AE 158 (237)
Q Consensus 157 ~D 158 (237)
+-
T Consensus 451 ~l 452 (461)
T KOG3928|consen 451 SL 452 (461)
T ss_pred HH
Confidence 44
No 341
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=45.77 E-value=78 Score=25.22 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=12.3
Q ss_pred HHHHHhcCCeEEEEccc
Q psy5642 34 FKRARQVSPSVIFFDEL 50 (237)
Q Consensus 34 f~~a~~~~P~il~iDei 50 (237)
+..|-...|.+|++||-
T Consensus 143 la~al~~~p~llllDEP 159 (213)
T cd03235 143 LARALVQDPDLLLLDEP 159 (213)
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 33444567999999994
No 342
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=45.71 E-value=1.3e+02 Score=23.59 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=28.8
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.=+ +......+..++..+. .. +..+|.+|+++..+
T Consensus 137 ~la~al~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~---~~-~~tii~~sH~~~~~ 190 (198)
T TIGR01189 137 ALARLWLSRAPLWILDEPTTAL-----------DKAGVALLAGLLRAHL---AR-GGIVLLTTHQDLGL 190 (198)
T ss_pred HHHHHHhcCCCEEEEeCCCcCC-----------CHHHHHHHHHHHHHHH---hC-CCEEEEEEcccccc
Confidence 3444555689999999954321 1222333444444332 22 33577777776544
No 343
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.67 E-value=32 Score=27.43 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=13.7
Q ss_pred HHHHHHhcCCeEEEEccccc
Q psy5642 33 VFKRARQVSPSVIFFDELDS 52 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~ 52 (237)
.+..|-...|.+|++||--.
T Consensus 138 ~ia~al~~~p~llllDEP~~ 157 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFA 157 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 34444556799999999543
No 344
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=45.13 E-value=74 Score=25.23 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=28.5
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. .+..+|.+|++++.+
T Consensus 136 ~la~al~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~~ 189 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGL-----------DPDGIKELRELILSLRD----QGITVLISSHLLSEI 189 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccC-----------CHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHH
Confidence 3444555679999999953321 12223333344444332 233567777776544
No 345
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=45.09 E-value=86 Score=24.13 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCeEEEEcccc
Q psy5642 30 VRDVFKRARQVSPSVIFFDELD 51 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid 51 (237)
-+-.+..|-...|.+|++||--
T Consensus 103 qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCc
Confidence 4445666777789999999953
No 346
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.02 E-value=1.1e+02 Score=23.56 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. . ...+|.+|++++.+.
T Consensus 106 ~la~al~~~p~llllDEP~~gL-----------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 159 (171)
T cd03228 106 AIARALLRDPPILILDEATSAL-----------DPETEALILEALRALA---K--GKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCC-----------CHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHHH
Confidence 3555666789999999943311 1222333334443332 2 256777788776653
No 347
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=44.89 E-value=13 Score=33.77 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=43.4
Q ss_pred ceEEEEEeccccc-ccccC-hHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHH
Q psy5642 7 LTEVVESIGPELF-RKYVG-ESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLT 78 (237)
Q Consensus 7 ~~~~i~v~~s~l~-~~~~g-~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~ 78 (237)
+++|+.++++.+. ..|+| +.+..++.+|..|... + ++|.+++.+.... .....+++..|+.
T Consensus 72 ~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~------i-~~d~i~~~r~~a~----~~ae~riv~~Ll~ 134 (441)
T TIGR00390 72 NAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKL------V-KEEAIEKVRDRAE----ELAEERIVDVLLP 134 (441)
T ss_pred CCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHH------H-HHHHHhHHHHHHH----HHHHHHHHHHhcC
Confidence 6899999999887 47999 7899999999999773 2 4577777663221 2233555555554
No 348
>KOG3423|consensus
Probab=44.68 E-value=1.5e+02 Score=23.22 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCccc--ccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy5642 123 LTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAE--QSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALEN 200 (237)
Q Consensus 123 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~D--l~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~ 200 (237)
..-.+++.++-...+.-++.-......+ .||...| +..++..| .-++ +..++.+|.-.+..+
T Consensus 71 ~~l~efl~qLddYtP~IPDavt~~yL~~-aGf~~~D~rv~RLvsLa----AQKf-----------vSDIa~DA~Q~~k~r 134 (176)
T KOG3423|consen 71 THLEEFLAQLDDYTPTIPDAVTDHYLKK-AGFQTSDPRVKRLVSLA----AQKF-----------VSDIANDALQHSKIR 134 (176)
T ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHh-cCCCcCcHHHHHHHHHH----HHHH-----------HHHHHHHHHHHhhhc
Confidence 3445666666655565566666665554 5999999 22222222 2222 455555565555433
Q ss_pred cc------------ccCCccHHHHHHHHhhc
Q psy5642 201 NL------------EAAYVSHQDFLTALQLV 219 (237)
Q Consensus 201 ~~------------~~~~v~~~df~~al~~~ 219 (237)
.. ....+|++|+..||++.
T Consensus 135 ~~~~~~~~k~~~kdkK~tLtmeDL~~AL~Ey 165 (176)
T KOG3423|consen 135 TKTAIGKDKKQAKDKKYTLTMEDLSPALAEY 165 (176)
T ss_pred cccccccccccccccceeeeHHHHHHHHHHh
Confidence 31 14579999999999874
No 349
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=44.63 E-value=50 Score=27.03 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccc
Q psy5642 26 SERCVRDVFKRARQVSPSVIFFDELDSL 53 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~~P~il~iDeid~l 53 (237)
....+..+.+.+....|.+|+||-+-.+
T Consensus 96 ~~~~~~~l~~~~~~~~~~lvviDpl~~~ 123 (239)
T cd01125 96 VVPEFERIIEQLLIRRIDLVVIDPLVSF 123 (239)
T ss_pred ccHHHHHHHHHHHhcCCCEEEECChHHh
Confidence 3556777777777778999999988776
No 350
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=44.59 E-value=71 Score=25.97 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=12.6
Q ss_pred HHHHHhcCCeEEEEcccc
Q psy5642 34 FKRARQVSPSVIFFDELD 51 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid 51 (237)
+..|-...|.||++||--
T Consensus 148 la~al~~~p~illlDEPt 165 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPS 165 (237)
T ss_pred HHHHHHhCCCEEEEcCcc
Confidence 334444579999999953
No 351
>PRK10908 cell division protein FtsE; Provisional
Probab=44.35 E-value=79 Score=25.39 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=29.3
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|....|.+|++||--.-+ +......+..++..+.. . +..+|.+|++++.+.
T Consensus 147 ~laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~---~-~~tiii~sH~~~~~~ 201 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNL-----------DDALSEGILRLFEEFNR---V-GVTVLMATHDIGLIS 201 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcC-----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 3445555689999999943311 12223333344444422 2 345777777765443
No 352
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=44.28 E-value=86 Score=24.99 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=28.2
Q ss_pred hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 39 QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 39 ~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
...|.++++||-..-+. ......+..++..+.. ...+...||.+|++++.+..
T Consensus 129 ~~~p~illlDEP~~glD-----------~~~~~~~~~~l~~~~~-~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 129 VMESPFRCLDEFDVFMD-----------MVNRKISTDLLVKEAK-KQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred ccCCCEEEecCcccccC-----------HHHHHHHHHHHHHHHh-cCCCcEEEEEECCccccccc
Confidence 36899999999755322 1112223333333211 01134467778888777653
No 353
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=44.28 E-value=22 Score=28.82 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=41.7
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch-hccCCC------Ccc
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK-ALLRPG------RLD 112 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~-al~r~g------Rf~ 112 (237)
..+.+|+||.+..++...-.... ......+.+..++..|..+....++.+|.|.......+. .....| -.|
T Consensus 106 ~~~~lvVIDsi~al~~~~~~~~~--~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d 183 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELEDEE--DNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLEHWSK 183 (225)
T ss_pred hcccEEEEeCcHHHhHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhhhhcc
Confidence 57899999999998753211110 011112334444444443333356666666443333321 111111 235
Q ss_pred cEEEecCCCHHHHH
Q psy5642 113 RLIYVPLPDDLTRA 126 (237)
Q Consensus 113 ~~i~~~~P~~~~R~ 126 (237)
.+|.+..+....|.
T Consensus 184 ~ii~l~~~~~~~r~ 197 (225)
T PRK09361 184 TILRLEKFRNGKRR 197 (225)
T ss_pred EEEEEEEccCCeEE
Confidence 57778776555543
No 354
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=44.27 E-value=1.9e+02 Score=25.95 Aligned_cols=68 Identities=21% Similarity=0.153 Sum_probs=37.5
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
..+.|||||+..+- ++ .+.+..+. |.. .. ++++.|++...-....+-.=+||. ..+.+.+.
T Consensus 94 ~~~yifLDEIq~v~------------~W-~~~lk~l~---d~~-~~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~Pl 154 (398)
T COG1373 94 EKSYIFLDEIQNVP------------DW-ERALKYLY---DRG-NL-DVLITGSSSSLLSKEISESLAGRG-KDLELYPL 154 (398)
T ss_pred CCceEEEecccCch------------hH-HHHHHHHH---ccc-cc-eEEEECCchhhhccchhhhcCCCc-eeEEECCC
Confidence 45799999998761 11 12222222 221 11 455555555433333333336795 46888888
Q ss_pred CHHHHHH
Q psy5642 121 DDLTRAA 127 (237)
Q Consensus 121 ~~~~R~~ 127 (237)
+..+...
T Consensus 155 SF~Efl~ 161 (398)
T COG1373 155 SFREFLK 161 (398)
T ss_pred CHHHHHh
Confidence 8888854
No 355
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=44.12 E-value=45 Score=27.28 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+..|-...|.+|++||--.- -+......+..++..+. ...+..||.+|++++.+
T Consensus 164 la~al~~~p~llllDEPt~~-----------LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~ 217 (236)
T cd03267 164 IAAALLHEPEILFLDEPTIG-----------LDVVAQENIRNFLKEYN---RERGTTVLLTSHYMKDI 217 (236)
T ss_pred HHHHHhcCCCEEEEcCCCCC-----------CCHHHHHHHHHHHHHHH---hcCCCEEEEEecCHHHH
Confidence 44455567999999995331 12222333334444332 22234577777776543
No 356
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.10 E-value=74 Score=25.26 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=29.8
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.- -+......+..++..+.. . +..||.+|++++.+
T Consensus 138 ~la~al~~~p~~lllDEP~~~-----------LD~~~~~~~~~~l~~~~~---~-~~tii~~sH~~~~~ 191 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSG-----------LDPVNVELLKDVIRELAR---A-GKTVILSTHQMELV 191 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcC-----------CCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHHHH
Confidence 355555668999999995331 122223344444444432 2 34677777765543
No 357
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=44.06 E-value=74 Score=26.06 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=28.4
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+..|-...|.+|++||--.-+ +......+..++..+. .. +..||.+|++++.+
T Consensus 155 la~al~~~p~lllLDEPt~~L-----------D~~~~~~l~~~l~~~~---~~-~~tvi~~tH~~~~~ 207 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSAL-----------DPELVGEVLNTIRQLA---QE-KRTMVIVTHEMSFA 207 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccC-----------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHH
Confidence 444555679999999953321 1222333444444442 22 34566677776544
No 358
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=43.36 E-value=66 Score=26.16 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccc
Q psy5642 26 SERCVRDVFKRARQVSPSVIFFDELDSLA 54 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~~P~il~iDeid~l~ 54 (237)
....+..+.+......|.+|+||++-.+.
T Consensus 105 ~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 105 ANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 35555666666666789999999998764
No 359
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=43.24 E-value=81 Score=25.63 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-.+..|-...|.+|++||--.- -+......+..++..+. . .+..||.+|++++.+.
T Consensus 153 l~la~al~~~p~llllDEPt~~-----------LD~~~~~~l~~~l~~~~---~-~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSG-----------LDIDALKIVAEGINRLR---E-PDRSFLIITHYQRLLN 208 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccc-----------CCHHHHHHHHHHHHHHH---H-CCcEEEEEEecHHHHH
Confidence 3455555668999999994331 12222333444444442 2 2345677777766543
No 360
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=43.20 E-value=1.2e+02 Score=23.90 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=28.9
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD 99 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 99 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. . +..+|.+|++++
T Consensus 144 ~laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~ 195 (206)
T TIGR03608 144 ALARAILKDPPLILADEPTGSL-----------DPKNRDEVLDLLLELND---E-GKTIIIVTHDPE 195 (206)
T ss_pred HHHHHHHcCCCEEEEeCCcCCC-----------CHHHHHHHHHHHHHHHh---c-CCEEEEEeCCHH
Confidence 4455556689999999964421 22223444444444432 2 335566777654
No 361
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=43.05 E-value=38 Score=27.11 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=13.3
Q ss_pred HHHHHhcCCeEEEEccccc
Q psy5642 34 FKRARQVSPSVIFFDELDS 52 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~ 52 (237)
+..|-...|.++++||-..
T Consensus 139 laral~~~p~llllDEPt~ 157 (213)
T TIGR01277 139 LARCLVRPNPILLLDEPFS 157 (213)
T ss_pred HHHHHhcCCCEEEEcCCCc
Confidence 3344456799999999644
No 362
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=42.99 E-value=35 Score=28.43 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEe
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAAT 95 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 95 (237)
...+..+-..+..+.|.+|+||.+..+........ ........++..|..+....++.|+.++
T Consensus 126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~------~~~~~~~~~~~~L~~la~~~~vtvll~s 188 (271)
T cd01122 126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASG------DERKALDEIMTKLRGFATEHGIHITLVS 188 (271)
T ss_pred HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCch------hHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 33444444445567899999999999864421111 1123344455555444333454455554
No 363
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=42.58 E-value=91 Score=25.47 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
-.+..|-...|.||++||--.-+ +......+..++..+.. .+..||.+|++++.+
T Consensus 154 v~laral~~~p~illLDEPt~~L-----------D~~~~~~l~~~l~~l~~----~~~tiii~sH~~~~~ 208 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGL-----------DIDALKIVADGVNSLRD----GKRSFIIVTHYQRIL 208 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccC-----------CHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH
Confidence 34555566689999999953311 12223334444444432 134567777775543
No 364
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=42.50 E-value=93 Score=25.72 Aligned_cols=71 Identities=23% Similarity=0.270 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhcc
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALL 106 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~ 106 (237)
.+.=|-+..+|-.+.|.||+.||= ..+- + ......++..+..+....+..+|..|+++ .+-
T Consensus 146 GqqQRVAIARAL~~~P~iilADEP-----TgnL------D---~~t~~~V~~ll~~~~~~~g~tii~VTHd~-----~lA 206 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEP-----TGNL------D---SKTAKEVLELLRELNKERGKTIIMVTHDP-----ELA 206 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCc-----cccC------C---hHHHHHHHHHHHHHHHhcCCEEEEEcCCH-----HHH
Confidence 344455777888889999999991 1111 1 12223333444333333344566666653 444
Q ss_pred CCCCcccEEEec
Q psy5642 107 RPGRLDRLIYVP 118 (237)
Q Consensus 107 r~gRf~~~i~~~ 118 (237)
. +.|++|++.
T Consensus 207 ~--~~dr~i~l~ 216 (226)
T COG1136 207 K--YADRVIELK 216 (226)
T ss_pred H--hCCEEEEEe
Confidence 4 667666664
No 365
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=42.46 E-value=2.7e+02 Score=26.14 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=56.5
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCC-CEEEEEE-e------CCCC--------ccchh
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLN-NVTIVAA-T------NRPD--------RIDKA 104 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~vI~t-t------n~~~--------~ld~a 104 (237)
.+.||+|+|+=.++... . .++-..|..++.. ... ++++|.| + +... -+++.
T Consensus 132 ~~kvILVEDlPN~~~~~--------~---~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~ 198 (519)
T PF03215_consen 132 NKKVILVEDLPNVFHRD--------T---SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKE 198 (519)
T ss_pred CceEEEeeccccccchh--------H---HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHH
Confidence 47799999987655432 1 3445555555554 223 7777777 1 1111 45677
Q ss_pred ccCCCCcccEEEecCCCHHHHHHHHHHHHcCC--------CCCc-hhhHHHHHHHCC
Q psy5642 105 LLRPGRLDRLIYVPLPDDLTRAAILKIRLARS--------PLGE-DVCVEELVRLTE 152 (237)
Q Consensus 105 l~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~--------~~~~-~~~~~~la~~t~ 152 (237)
++...+. .+|.|.+-...--...|+..+... .... ...++.|+..+.
T Consensus 199 il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~ 254 (519)
T PF03215_consen 199 ILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSN 254 (519)
T ss_pred HHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcC
Confidence 7764444 468898877766666666555432 1111 223777777653
No 366
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=42.41 E-value=55 Score=26.65 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+.. ..+..+|.+|++++.+.
T Consensus 141 l~laral~~~p~llllDEP~~~L-----------D~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 141 VEIARALLHRPALLLLDEPTVGL-----------DPASRAAIVAHVRALCR---DQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCccCC-----------CHHHHHHHHHHHHHHHH---hCCCEEEEEecChhhHh
Confidence 34555666789999999953321 22223333334433321 12345777777777664
No 367
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=42.35 E-value=80 Score=26.94 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=31.8
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.- -+...+..+..++..+.. .+..||.+|++++.+.
T Consensus 134 ~la~al~~~p~lllLDEPt~g-----------LD~~~~~~l~~~l~~~~~----~g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPTTG-----------LDPRTRRAIWDYIRALKE----EGVTILLTTHYMEEAD 188 (302)
T ss_pred HHHHHHhcCCCEEEEeCCCcC-----------CCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHHHH
Confidence 455566678999999994221 122333444444444432 2456788888776544
No 368
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=42.10 E-value=87 Score=26.21 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 36 RARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 36 ~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.|-...|.+|++||--.-+ +......+..++..+. .. +..||.+|++++.+
T Consensus 155 raL~~~p~llllDEPt~~L-----------D~~~~~~l~~~L~~~~---~~-g~tviivsH~~~~~ 205 (272)
T PRK15056 155 RAIAQQGQVILLDEPFTGV-----------DVKTEARIISLLRELR---DE-GKTMLVSTHNLGSV 205 (272)
T ss_pred HHHhcCCCEEEEeCCCccC-----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 3344579999999953321 2222334444444442 22 34577777776654
No 369
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=42.10 E-value=97 Score=25.39 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=29.7
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.- -+......+..++..+.. .+..||.+|++++.+
T Consensus 161 ~la~al~~~p~llllDEPt~~-----------LD~~~~~~l~~~l~~~~~----~g~tii~~tH~~~~~ 214 (252)
T CHL00131 161 EILQMALLDSELAILDETDSG-----------LDIDALKIIAEGINKLMT----SENSIILITHYQRLL 214 (252)
T ss_pred HHHHHHHcCCCEEEEcCCccc-----------CCHHHHHHHHHHHHHHHh----CCCEEEEEecCHHHH
Confidence 445566678999999995321 122223334444444322 234567777776644
No 370
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.93 E-value=77 Score=26.62 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+. .. +..||.+|++++.+
T Consensus 154 v~la~al~~~p~lllLDEPt~~L-----------D~~~~~~l~~~l~~~~---~~-~~tiiivsH~~~~~ 208 (280)
T PRK13649 154 VAIAGILAMEPKILVLDEPTAGL-----------DPKGRKELMTLFKKLH---QS-GMTIVLVTHLMDDV 208 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeccHHHH
Confidence 34555666689999999954321 2222333444444442 22 34577777766543
No 371
>PHA00520 packaging NTPase P4
Probab=41.91 E-value=1e+02 Score=26.63 Aligned_cols=54 Identities=24% Similarity=0.291 Sum_probs=40.9
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR 97 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~ 97 (237)
.-+||++|-+-.+...-..+..++ -..+..-.+|+-|+++-...+++||++.|-
T Consensus 183 ~v~VvvvDSlr~vl~~~~GnatsG---GISr~~~~~LTdl~~iaas~gc~vV~~lNP 236 (330)
T PHA00520 183 DVDVVVVDSLRNVLFELGGNATSG---GISRGAYGLLTDLGNIAASRGCRVVATLNP 236 (330)
T ss_pred hceEEEEechHHHHhhhccCCCCC---cchHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 568999999999876655444322 225778889999998877788999999885
No 372
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.51 E-value=1.5e+02 Score=23.26 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=14.5
Q ss_pred HHHHHHhcCCeEEEEccccc
Q psy5642 33 VFKRARQVSPSVIFFDELDS 52 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~ 52 (237)
.+..|-...|.+|++||--.
T Consensus 118 ~la~al~~~p~vlllDEP~~ 137 (192)
T cd03232 118 TIGVELAAKPSILFLDEPTS 137 (192)
T ss_pred HHHHHHhcCCcEEEEeCCCc
Confidence 34555666899999999543
No 373
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=41.34 E-value=91 Score=25.24 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=29.3
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. .+..+|.+|++++.+
T Consensus 153 ~la~al~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~----~~~tii~vsH~~~~~ 206 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGL-----------NPEETEELAELIRELRE----RGITVLLVEHDMDVV 206 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHH
Confidence 3445555689999999953311 22223334444444332 233567777776644
No 374
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=41.17 E-value=88 Score=25.48 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=29.1
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. . +..+|.+|++++.+
T Consensus 147 ~laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~---~-g~tiii~sH~~~~~ 200 (241)
T PRK10895 147 EIARALAANPKFILLDEPFAGV-----------DPISVIDIKRIIEHLRD---S-GLGVLITDHNVRET 200 (241)
T ss_pred HHHHHHhcCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHHh---c-CCEEEEEEcCHHHH
Confidence 3445555689999999953321 12223334444444432 2 33566677766544
No 375
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=41.04 E-value=54 Score=28.71 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCC--CchHHHHHHHHHHHhcCCCCCCCEEEEEEeC
Q psy5642 26 SERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGG--SNVQERVLAQMLTEMDGIVPLNNVTIVAATN 96 (237)
Q Consensus 26 ~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 96 (237)
.+..+..+-..++...+.+|+||-+-.+.+...-.+..+. .....+.++.++..|.......++.+|.|..
T Consensus 118 ~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 118 GEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred HHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 3445555544556678999999999999863221111110 1122355566666665554556777777654
No 376
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=41.02 E-value=94 Score=25.29 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=29.6
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||-..-+ +......+..++..+.. . +..+|.+|++++.++
T Consensus 146 ~la~al~~~p~llllDEP~~~L-----------D~~~~~~l~~~l~~~~~---~-~~tiii~sH~~~~~~ 200 (240)
T PRK09493 146 AIARALAVKPKLMLFDEPTSAL-----------DPELRHEVLKVMQDLAE---E-GMTMVIVTHEIGFAE 200 (240)
T ss_pred HHHHHHhcCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHHH
Confidence 3444555679999999954321 12223334444444422 2 345677777766543
No 377
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=40.97 E-value=1.7e+02 Score=23.03 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCeEEEEccccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDS 52 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~ 52 (237)
-.+..|-...|.+|++||--.
T Consensus 120 v~laral~~~p~illlDEP~~ 140 (194)
T cd03213 120 VSIALELVSNPSLLFLDEPTS 140 (194)
T ss_pred HHHHHHHHcCCCEEEEeCCCc
Confidence 345556667899999999543
No 378
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=40.77 E-value=60 Score=28.11 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeC--CCCccc
Q psy5642 25 ESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATN--RPDRID 102 (237)
Q Consensus 25 ~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn--~~~~ld 102 (237)
.....+..+.+++...-..+|+|||++.......... ... + .......|++.-++.+|+..-+|- .|.+|.
T Consensus 156 ~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~---~~s---k-~g~avl~LQ~~LP~ARvvY~SATgasep~Nma 228 (303)
T PF13872_consen 156 KYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSK---KPS---K-TGIAVLELQNRLPNARVVYASATGASEPRNMA 228 (303)
T ss_pred CccchHHHHHHHHhcCCCceEEeccchhcCCCCccCc---ccc---H-HHHHHHHHHHhCCCCcEEEecccccCCCceee
Confidence 3467788888888876678999999998754422211 111 1 122222333333445776666663 355554
No 379
>PRK10869 recombination and repair protein; Provisional
Probab=40.70 E-value=1.9e+02 Score=27.28 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=48.2
Q ss_pred cChHHHHHHHHHHHHHh--cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 23 VGESERCVRDVFKRARQ--VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 23 ~g~~~~~l~~~f~~a~~--~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
.|.....+.-++..+.. ..|.++++||+|.-... .....+..++..+.. +.-||..|+.|.-
T Consensus 432 SgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~-----------~~~~~v~~~l~~l~~-----~~qvi~iTH~~~~ 495 (553)
T PRK10869 432 SGGELSRIALAIQVITARKMETPALIFDEVDVGISG-----------PTAAVVGKLLRQLGE-----STQVMCVTHLPQV 495 (553)
T ss_pred CHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCH-----------HHHHHHHHHHHHHhc-----CCEEEEEecCHHH
Confidence 44445555555555543 35789999999874332 112333444444422 2346777777642
Q ss_pred cchhccCCCCcccEEEe-------------cCCCHHHHHHHHHHHHcC
Q psy5642 101 IDKALLRPGRLDRLIYV-------------PLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 101 ld~al~r~gRf~~~i~~-------------~~P~~~~R~~il~~~l~~ 135 (237)
. + ..|.++.+ ...+.++|..-+..++..
T Consensus 496 ~-----~--~ad~~~~v~k~~~~~~t~s~i~~L~~~~R~~EiARMl~G 536 (553)
T PRK10869 496 A-----G--CGHQHFFVSKETDGGMTETHMQPLDKKARLQELARLLGG 536 (553)
T ss_pred H-----H--hCCEEEEEeccccCCeeeEEEEECChhHHHHHHHHHhCC
Confidence 2 2 33444433 335666666666666654
No 380
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.56 E-value=95 Score=26.05 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=30.5
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.= -+...+..+..++..+.. .+..||.+|++++.+
T Consensus 146 ~laral~~~p~lllLDEPt~g-----------LD~~~~~~l~~~l~~l~~----~g~til~~tH~~~~~ 199 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSM-----------LDPDSGIAVLERIKKLHE----KGKTIVYITHNLEEL 199 (274)
T ss_pred HHHHHHHcCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHHh----CCCEEEEEecCHHHH
Confidence 455566678999999995331 122223334444444432 244577777776655
No 381
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=40.50 E-value=97 Score=25.55 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.++++||--.-+ +......+..++..+.. . +..||.+|++++.+.
T Consensus 147 ~la~al~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~---~-~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHL-----------DVRAQLETLALVRELAA---T-GVTVVAALHDLNLAA 201 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccC-----------CHHHHHHHHHHHHHHHh---c-CCEEEEEeCCHHHHH
Confidence 3444555679999999954321 12223344444444432 2 345777777766553
No 382
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=40.43 E-value=95 Score=25.12 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=29.7
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +...+..+..++..+. .. +..||.+|++++.+.
T Consensus 152 ~laral~~~p~llllDEP~~gL-----------D~~~~~~~~~~l~~~~---~~-~~tiii~sH~~~~~~ 206 (224)
T cd03220 152 AFAIATALEPDILLIDEVLAVG-----------DAAFQEKCQRRLRELL---KQ-GKTVILVSHDPSSIK 206 (224)
T ss_pred HHHHHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 3555666689999999953321 2222333333444332 22 345777777765443
No 383
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=40.37 E-value=47 Score=26.71 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=32.3
Q ss_pred hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeC
Q psy5642 39 QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATN 96 (237)
Q Consensus 39 ~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 96 (237)
...+.+|+||-+-.++......... .....+.+..++..|..+....++.||.|..
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~~~~~--~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFIGRGM--LAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhcCCch--HHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 4578899999999987643221100 0112344556666666554445666776653
No 384
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=40.28 E-value=1e+02 Score=30.37 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=55.1
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHh---cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQ---VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~---~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.++.++.++|.+.-. ...-.+.-+|.+... ..|.+|+|||+..++... .....+..++..+ ++
T Consensus 593 ~~~~fdl~~L~~~~~-~~~~vl~yl~~ri~~~~~gr~~ii~iDEaw~~l~~~----------~~~~~i~~~~kt~---RK 658 (789)
T PRK13853 593 SITGFDMTHLLEYEE-VCAPAAAYLLHRIGAMVDGRRFVMSCDEFRAYLLNP----------KFAAVVDKFLLTV---RK 658 (789)
T ss_pred CeEEEEchHhcCChh-hHHHHHHHHHHHHHHhcCCCcEEEEEechhHHhCCH----------HHHHHHHHHHHHH---HH
Confidence 467777777765311 112233334444332 479999999998887631 1123333344333 22
Q ss_pred CCCEEEEEEeCCCCccc-----hhccCCCCcccEEEecCCCH
Q psy5642 86 LNNVTIVAATNRPDRID-----KALLRPGRLDRLIYVPLPDD 122 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld-----~al~r~gRf~~~i~~~~P~~ 122 (237)
.+..++.+|-++.++- .+++. -.+..|.+|.|..
T Consensus 659 -~ng~~~~~TQs~~D~~~s~~~~~i~~--n~~t~I~Lpn~~a 697 (789)
T PRK13853 659 -NNGMLILATQQPEHVLESPLGASLVA--QCMTKIFYPSPTA 697 (789)
T ss_pred -cCeEEEEecCCHHHHHcCchHHHHHH--hCCeEEEcCCccc
Confidence 4556667777766554 34555 4677888888853
No 385
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=40.23 E-value=1.1e+02 Score=24.55 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=30.5
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. + ..||.+|++++.+.
T Consensus 143 ~la~al~~~p~llllDEP~~~L-----------D~~~~~~l~~~l~~~~~----~-~tii~~sH~~~~~~ 196 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGL-----------DPASRRAIWDLILEVRK----G-RSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCC-----------CHHHHHHHHHHHHHHhc----C-CEEEEEcCCHHHHH
Confidence 3445555689999999954321 22223334444444322 2 46788888766553
No 386
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.14 E-value=39 Score=28.48 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 30 VRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
-+-.+..|-...|.+|++||--.= -+......+..++..+.. ..+..||.+|++++.+..
T Consensus 144 qrl~laraL~~~p~llilDEPt~g-----------LD~~~~~~l~~~l~~l~~---~~g~tvli~tH~~~~~~~ 203 (277)
T PRK13652 144 KRVAIAGVIAMEPQVLVLDEPTAG-----------LDPQGVKELIDFLNDLPE---TYGMTVIFSTHQLDLVPE 203 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHHH
Confidence 334455666678999999994321 122223333344443322 224567788887776543
No 387
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.87 E-value=90 Score=26.06 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=29.6
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.- -+......+..++..+.. . +..||.+|++++.+.
T Consensus 146 ~laraL~~~p~lllLDEPt~~-----------LD~~~~~~l~~~l~~~~~---~-g~tii~vtH~~~~~~ 200 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAG-----------LDPAGRTQMIAIIRRIVA---Q-GNHVIISSHDIDLIY 200 (271)
T ss_pred HHHHHHHcCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 344555568999999995331 122223334444444432 2 335667777766543
No 388
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=39.85 E-value=47 Score=29.55 Aligned_cols=47 Identities=19% Similarity=0.401 Sum_probs=28.1
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh---cCCCCCCCEEEEEEeCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM---DGIVPLNNVTIVAATNR 97 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l---~~~~~~~~v~vI~ttn~ 97 (237)
.|.|++|||+|-++.. .+.+.+...++... +-+...+.-.|+-|.+.
T Consensus 295 tpgivLiDeIdlflhP----------~WQQqi~qkL~saFp~IQfIvstHsP~vlsTv~~ 344 (440)
T COG3950 295 TPGIVLIDEIDLFLHP----------KWQQQINQKLLSAFPEIQFIVSTHSPFVLSTVNG 344 (440)
T ss_pred CCceEEeehhhhhcCH----------HHHHHHHHHHHhhchhhhhhhhcCCceEEEeccc
Confidence 5999999999998763 34455555555433 32333344455555554
No 389
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=39.68 E-value=66 Score=24.59 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=25.9
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.|.+++|||...=... .....+...+...+.. +..+|.+|.+++..
T Consensus 99 ~~~llllDEp~~gld~----------~~~~~l~~~l~~~~~~-----~~~vii~TH~~~~~ 144 (162)
T cd03227 99 PRPLYILDEIDRGLDP----------RDGQALAEAILEHLVK-----GAQVIVITHLPELA 144 (162)
T ss_pred CCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhc-----CCEEEEEcCCHHHH
Confidence 7899999997553221 1123344444444333 33577788876544
No 390
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=39.58 E-value=52 Score=26.74 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=30.1
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. ...+..||.+|++++.+
T Consensus 155 ~la~al~~~p~lllLDEPt~~L-----------D~~~~~~l~~~l~~~~---~~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNL-----------DARNADSIFQLLGELN---RLQGTAFLVVTHDLQLA 209 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHH
Confidence 3445556689999999953321 2222333444444432 21244677777776554
No 391
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.37 E-value=94 Score=26.29 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.+|++||--.- -+......+..++..+. . .+..||.+|++++.+
T Consensus 153 rl~laral~~~p~lLlLDEPt~g-----------LD~~~~~~l~~~l~~l~---~-~g~tvlivsH~~~~~ 208 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAG-----------LDPEGRKEMMQLFKDYQ---K-AGHTVILVTHNMDDV 208 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCC-----------CCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH
Confidence 33455566678999999994321 12222333444444442 2 244566677765544
No 392
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=39.32 E-value=49 Score=27.24 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=31.3
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.- -+......+..++..+.. ..+..||.+|++++.+.
T Consensus 163 ~la~al~~~p~llllDEPt~~-----------LD~~~~~~l~~~L~~~~~---~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAG-----------LNPKETKELDELIAELRN---EHNVTVLLIEHDMKLVM 218 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccC-----------CCHHHHHHHHHHHHHHHh---hcCCEEEEEeCCHHHHH
Confidence 333445567999999995331 122233444444444422 22456888888776553
No 393
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=39.30 E-value=1e+02 Score=25.13 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+.. ...+|.+|++++.+.
T Consensus 152 v~laral~~~p~~lllDEPt~~L-----------D~~~~~~l~~~l~~~~~-----~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGM-----------TDEETEKTAELLKSLAG-----KHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCC-----------CHHHHHHHHHHHHHHhc-----CCEEEEEECCHHHHH
Confidence 34455556689999999954321 22223444444444432 246788888766554
No 394
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=39.20 E-value=51 Score=27.50 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=30.2
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||-..-+ +......+..++..+. ...+..||.+|++++.+.
T Consensus 153 ~laral~~~p~llllDEPt~gL-----------D~~~~~~l~~~L~~l~---~~~~~tiii~tH~~~~~~ 208 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWL-----------DISHQIDLLELLSELN---REKGYTLAAVLHDLNQAC 208 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccC-----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 3445555689999999964321 1222333334444332 222446777777766543
No 395
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.09 E-value=56 Score=25.20 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCeEEEEccccc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDS 52 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~ 52 (237)
+-.+..|-...|.+|++||--.
T Consensus 103 rv~laral~~~p~illlDEPt~ 124 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTS 124 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCcc
Confidence 3356666677899999999543
No 396
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.04 E-value=49 Score=26.90 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=29.1
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+..|-...|.+|++||--.-+ +......+..++..+. ...+..||.+|++++.+.
T Consensus 155 la~al~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~~ 209 (241)
T cd03256 155 IARALMQQPKLILADEPVASL-----------DPASSRQVMDLLKRIN---REEGITVIVSLHQVDLAR 209 (241)
T ss_pred HHHHHhcCCCEEEEeCccccC-----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 444455679999999953321 2222333333443332 222345777777766543
No 397
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=39.02 E-value=1.2e+02 Score=29.69 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=50.5
Q ss_pred EEEEecccccccccChHHHHHHHHHHHHH---hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 10 VVESIGPELFRKYVGESERCVRDVFKRAR---QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 10 ~i~v~~s~l~~~~~g~~~~~l~~~f~~a~---~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
++.++-+.|.+. ..-..-.+.-+|.... ...|.+++|||+..++... .....+..++..+..
T Consensus 596 ~v~fdl~~l~~~-~~~~~~~~~~l~~~i~~~~~~~~~~i~iDEa~~ll~~~----------~~~~~i~~~~r~~RK---- 660 (785)
T TIGR00929 596 ITGFDLTELLDN-PKVATPVLMYLFHRINEALDGRPFLIIIDEAWQYLGNP----------VFAAKIRDWLKTLRK---- 660 (785)
T ss_pred eEEEEchhhccC-HHHHHHHHHHHHHHHHHhcCCCCeEEEEechhhhcCCH----------HHHHHHHHHHHHHHH----
Confidence 555555555533 1111222233333322 3479999999999987531 112334444444433
Q ss_pred CCEEEEEEeCCCCccc-----hhccCCCCcccEEEecCCC
Q psy5642 87 NNVTIVAATNRPDRID-----KALLRPGRLDRLIYVPLPD 121 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld-----~al~r~gRf~~~i~~~~P~ 121 (237)
.+..++.+|-++.++. .+++. -.+..|.++.|.
T Consensus 661 ~~~~~~~~TQ~~~d~~~~~~~~~il~--n~~~ki~l~~~~ 698 (785)
T TIGR00929 661 ANGIVVLATQSINDALGSRIADSILE--QCATKIFLPNPE 698 (785)
T ss_pred cCCEEEEEeCCHHHHhcCchHHHHHH--hCCEEEEcCCCC
Confidence 3455666776666543 33444 566777777764
No 398
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=39.00 E-value=54 Score=26.24 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=29.9
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +...+..+..++..+.. ..+..||.+|++++.+
T Consensus 150 ~la~al~~~p~lllLDEP~~~L-----------D~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~~ 204 (218)
T cd03255 150 AIARALANDPKIILADEPTGNL-----------DSETGKEVMELLRELNK---EAGTTIVVVTHDPELA 204 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHHH---hcCCeEEEEECCHHHH
Confidence 3445555689999999953321 22223344444444422 1245677777776543
No 399
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=38.57 E-value=69 Score=31.42 Aligned_cols=74 Identities=14% Similarity=0.017 Sum_probs=42.1
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch-----hccCCCCcccE
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK-----ALLRPGRLDRL 114 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~-----al~r~gRf~~~ 114 (237)
..|.+++|||++.++... .. ....++..+-....+.+..++..|-++.++.. +++. -.+..
T Consensus 636 ~~~~~~viDEaw~ll~~~--------~~----~~~~~i~~~~r~~RK~g~~~~~~TQ~~~D~~~~~~~~~il~--n~~~~ 701 (797)
T TIGR02746 636 KRRKICIIDEAWSLLDGA--------NP----QAADFIETGYRRARKYGGAFITITQGIEDFYSSPEARAAYA--NSDWK 701 (797)
T ss_pred CCceEEEEecHHHHhhcc--------cH----HHHHHHHHHHHHHhhcCceEEEEEecHHHhccCHHHHHHHh--cccce
Confidence 369999999999997621 11 12333333222222245667777777887743 4444 45567
Q ss_pred EEecCCCHHHHHHH
Q psy5642 115 IYVPLPDDLTRAAI 128 (237)
Q Consensus 115 i~~~~P~~~~R~~i 128 (237)
|.++.+. ++...+
T Consensus 702 i~L~~~~-~~~~~~ 714 (797)
T TIGR02746 702 IILRQSA-ESIAKL 714 (797)
T ss_pred eeecCCH-HHHHHH
Confidence 7777653 334443
No 400
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=38.48 E-value=97 Score=26.44 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=30.8
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.= -+...+..+..++..+.. .+..||.+|++++.+.
T Consensus 145 ~la~al~~~p~lllLDEPt~g-----------LD~~~~~~l~~~l~~~~~----~g~til~~sH~~~~~~ 199 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTG-----------LDPHARHLIWERLRSLLA----RGKTILLTTHFMEEAE 199 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcC-----------CCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHHHH
Confidence 344555668999999994221 122233334444444422 2456788888776543
No 401
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=38.43 E-value=1e+02 Score=25.14 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+..|-...|.++++||-..-+ +......+..++..+.. . +..+|.+|+++..+
T Consensus 152 laral~~~p~llilDEPt~~L-----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~ 204 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAAL-----------DPEITAQIVSIIRELAE---T-GITQVIVTHEVEVA 204 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcC-----------CHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 445555679999999964421 22223444445554422 2 34567777776654
No 402
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=38.40 E-value=61 Score=26.34 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=29.7
Q ss_pred HHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEe
Q psy5642 37 ARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAAT 95 (237)
Q Consensus 37 a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 95 (237)
.....|.+|+||.+..+.... ... .....+..++..|..+....++.+|.++
T Consensus 119 ~~~~~~~~vvID~l~~l~~~~-~~~------~~~~~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 119 KKEHGLGLIVIDYLQLMSGSK-KKG------NRQQEVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHhcCCCEEEEcCchhcCCCC-CCC------CHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 345588999999999875332 101 1123345555555554444555666665
No 403
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=38.32 E-value=61 Score=31.98 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCC--CchHHHHHHHHHHHhcCCCCCCCEEEEEEe
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGG--SNVQERVLAQMLTEMDGIVPLNNVTIVAAT 95 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 95 (237)
+..+..+-.......|.+|+||-+-.++....-++..+. -....+.++.+|..|..+....++.+|.|-
T Consensus 124 E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred HHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 334444444445567999999999999862221111111 122345556666666665555677777764
No 404
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=38.31 E-value=99 Score=27.07 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=31.9
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
+..|-...|.+|++||--.= -+...+..+..++..+.. .+..||.+|++.+.+..
T Consensus 183 lA~aL~~~P~lLiLDEPt~g-----------LD~~~r~~l~~~l~~l~~----~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 183 LARALINDPQLLILDEPTTG-----------LDPHARHLIWERLRSLLA----RGKTILLTTHFMEEAER 237 (340)
T ss_pred HHHHHhcCCCEEEEECCCCC-----------CCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHHHHH
Confidence 44455568999999994321 123334444445544432 24467888887776543
No 405
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.21 E-value=1.2e+02 Score=25.16 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
-.+..|-...|.+|++||--.= -+......+..++..+. . + ..||.+|++++.++.
T Consensus 159 v~laral~~~p~lllLDEPt~~-----------LD~~~~~~l~~~l~~~~---~-~-~tiii~tH~~~~i~~ 214 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSA-----------LDPIATMKVEELIHSLR---S-E-LTIAIVTHNMQQATR 214 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCcc-----------CCHHHHHHHHHHHHHHh---c-C-CEEEEEeCCHHHHHH
Confidence 3455555668999999995321 12222333444444442 2 2 467777887776543
No 406
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=38.20 E-value=1.2e+02 Score=24.39 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=29.0
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.- -+......+..++..+.. . ..||.+|++++.+
T Consensus 151 ~la~al~~~p~llllDEPt~~-----------LD~~~~~~l~~~l~~~~~----~-~tii~~sH~~~~~ 203 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSA-----------LDPISTAKIEELIAELKK----E-YTIVIVTHNMQQA 203 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCcc-----------CCHHHHHHHHHHHHHHhh----C-cEEEEEeccHHHH
Confidence 344555568999999995331 122223333344444322 2 4577788776544
No 407
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=38.11 E-value=50 Score=27.43 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=31.0
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. ..+..||.+|++++.+.
T Consensus 162 ~laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~---~~g~tvii~tH~~~~~~ 217 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASL-----------DPESARIVMDTLRDINQ---NDGITVVVTLHQVDYAL 217 (262)
T ss_pred HHHHHHhcCCCEEEecCccccC-----------CHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHH
Confidence 3445555689999999954321 22223334444444322 12356777888776543
No 408
>PRK11823 DNA repair protein RadA; Provisional
Probab=38.11 E-value=53 Score=30.01 Aligned_cols=28 Identities=7% Similarity=0.344 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccc
Q psy5642 29 CVRDVFKRARQVSPSVIFFDELDSLAGE 56 (237)
Q Consensus 29 ~l~~~f~~a~~~~P~il~iDeid~l~~~ 56 (237)
.+..+++......|.+|+||.+..+...
T Consensus 144 ~l~~i~~~i~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 144 NLEAILATIEEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred CHHHHHHHHHhhCCCEEEEechhhhccc
Confidence 3556667777778999999999988754
No 409
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=37.99 E-value=98 Score=25.36 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccc
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLA 54 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~ 54 (237)
...+..+...+....|.++++|++-.+.
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 5667777777777789999999998865
No 410
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.81 E-value=49 Score=28.13 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+-.+..|-...|.+|++||--.-+ +.. ....++..+..+....+..||.+|++++.+.
T Consensus 153 rv~lAraL~~~P~llllDEPt~~L-----------D~~---~~~~l~~~L~~l~~~~g~tviiitHd~~~~~ 210 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGL-----------DPK---GRKEMMEMFYKLHKEKGLTTVLVTHSMEDAA 210 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccC-----------CHH---HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 344556666789999999954321 122 2333444443332223456777777766443
No 411
>PRK09694 helicase Cas3; Provisional
Probab=37.80 E-value=43 Score=33.48 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=29.9
Q ss_pred hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 39 QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 39 ~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
..+.++|+|||++.+- .....++..++.++... +.-+|+.|+.-|..+
T Consensus 437 ~La~svvIiDEVHAyD------------~ym~~lL~~~L~~l~~~---g~~vIllSATLP~~~ 484 (878)
T PRK09694 437 GLGRSVLIVDEVHAYD------------AYMYGLLEAVLKAQAQA---GGSVILLSATLPATL 484 (878)
T ss_pred hhccCeEEEechhhCC------------HHHHHHHHHHHHHHHhc---CCcEEEEeCCCCHHH
Confidence 3456899999999982 22245667777776552 333566666656544
No 412
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=37.74 E-value=1e+02 Score=24.57 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=27.5
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
+..|-...|.+|++||--.-+ +......+..++..+.. .+..+|.+|++++.
T Consensus 143 laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~ 194 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGL-----------APKIVEEIFEAIRELRD----EGVTILLVEQNARF 194 (222)
T ss_pred HHHHHhcCCCEEEECCCcccC-----------CHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 334445579999999953311 22223334444444322 23456777776553
No 413
>PF11796 DUF3323: Protein of unknown function N-terminus (DUF3323); InterPro: IPR024466 This domain is found to the N terminus of bacterial conserved hypothetical proteins which are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Beta-proteobacteria).
Probab=37.59 E-value=1.5e+02 Score=24.00 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=37.7
Q ss_pred CCcccEEEecCCCHHHHHHHHHHHHcCCCCC-----chhhHHHHHHHCCCCCcccccchhHH
Q psy5642 109 GRLDRLIYVPLPDDLTRAAILKIRLARSPLG-----EDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 109 gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
||+.-.|.+..|+.++|+.+-..+-+..... +-.++++....+ +|.+.|+..+...
T Consensus 1 G~~~G~v~L~~~t~~Er~al~~llGr~~~~~~~~~v~l~~~~~aL~~s-~f~~~~L~~~Le~ 61 (215)
T PF11796_consen 1 GRLGGTVRLTNLTEEEREALAGLLGRDFSGGKSIRVSLADFDKALRRS-RFAGVDLREVLEA 61 (215)
T ss_pred CCCceEEEeCCCCHHHHHHHHHHhCCCCCCCCCeeeeHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 6888899999999999998877666554412 223444444444 7888885555543
No 414
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.56 E-value=45 Score=28.23 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=30.2
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. ..+..||.+|++++.+
T Consensus 160 ~laral~~~p~lLlLDEPt~~L-----------D~~~~~~l~~~l~~~~~---~~~~tiiiisH~~~~~ 214 (289)
T PRK13645 160 ALAGIIAMDGNTLVLDEPTGGL-----------DPKGEEDFINLFERLNK---EYKKRIIMVTHNMDQV 214 (289)
T ss_pred HHHHHHHhCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHH
Confidence 3445556689999999953321 22223334444444322 1244577788876644
No 415
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=37.46 E-value=1.4e+02 Score=23.10 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..+..|..|+. ....+|+|||+-....-.--+ ...++..+++ ...+.=||.|.+. .|
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~------------~~~v~~ll~~--rp~~~evIlTGr~---~p 139 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLD------------VEEVVDLLKA--KPEDLELVLTGRN---AP 139 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCC------------HHHHHHHHHc--CCCCCEEEEECCC---CC
Confidence 3455566666654 356799999997764432111 3456666665 3345667788775 56
Q ss_pred hhccCCCCcccEEEec
Q psy5642 103 KALLRPGRLDRLIYVP 118 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~ 118 (237)
+.|+. +.|.+-++.
T Consensus 140 ~~l~e--~AD~VTEm~ 153 (159)
T cd00561 140 KELIE--AADLVTEMR 153 (159)
T ss_pred HHHHH--hCceeeecc
Confidence 77777 777665553
No 416
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=37.40 E-value=1.1e+02 Score=24.71 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=27.3
Q ss_pred HHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 36 RARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 36 ~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.|-...|.+|++||--.-+ +......+..++..+.. .+..+|.+|++++.+
T Consensus 126 ral~~~p~llilDEP~~~L-----------D~~~~~~l~~~l~~~~~----~~~tvii~sH~~~~~ 176 (223)
T TIGR03771 126 RALATRPSVLLLDEPFTGL-----------DMPTQELLTELFIELAG----AGTAILMTTHDLAQA 176 (223)
T ss_pred HHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHH
Confidence 3444579999999954321 22223334444444322 244567777766543
No 417
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=37.35 E-value=1.2e+02 Score=25.26 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=29.5
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.- -+......+..++..+.. . ..||.+|++++.++
T Consensus 161 ~laral~~~p~lllLDEPt~~-----------LD~~~~~~l~~~L~~~~~----~-~tvi~vtH~~~~~~ 214 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSA-----------LDPISTLRIEELMHELKE----Q-YTIIIVTHNMQQAA 214 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCcc-----------CCHHHHHHHHHHHHHHhc----C-CEEEEEecCHHHHH
Confidence 444555568999999994321 112223334444444432 2 35677777766554
No 418
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=37.34 E-value=78 Score=25.85 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchh
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKA 104 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~a 104 (237)
-+.++.+++.+ ..|++++|||+-.=.. ......+...++..+... .+..+|.+|...+-....
T Consensus 97 ~~~~~~il~~~--~~~sLvLlDE~~~Gt~----------~~dg~~la~ail~~L~~~---~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 97 LSETANILRHA--TPDSLVILDELGRGTS----------THDGYAIAHAVLEYLVKK---VKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred HHHHHHHHHhC--CCCeEEEEecccCCCC----------chHHHHHHHHHHHHHHHh---cCCcEEEEeccHHHHHHh
Confidence 44556666665 4689999999643111 111133444445555431 245677788876654443
No 419
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=36.99 E-value=57 Score=26.87 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=28.7
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+..|-...|.+|++||-..-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 157 laral~~~p~llllDEP~~~L-----------D~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSAL-----------DPELVGEVLNVIRRLA---SEHDLTMLLVTHEMGFA 210 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHH
Confidence 444555679999999954321 1122233333343332 22245677777776544
No 420
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=36.94 E-value=59 Score=26.90 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=30.4
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+ ....+..||.+|++++.+.
T Consensus 161 ~laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~---~~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGL-----------DVSVQARLLDLLRGL---VRELGLAVVIVTHDLAVAR 216 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHHH
Confidence 3445555679999999954321 122223333333333 2222456788888776654
No 421
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.88 E-value=1e+02 Score=26.75 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 29 CVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 29 ~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.-+-.+..|-...|.||++||--.- -+......+..++..+.. . +..||.+|++++.+
T Consensus 182 kqRvaiAraL~~~p~iLLLDEPtsg-----------LD~~~~~~l~~~L~~l~~---~-g~TiiivtHd~~~~ 239 (320)
T PRK13631 182 KRRVAIAGILAIQPEILIFDEPTAG-----------LDPKGEHEMMQLILDAKA---N-NKTVFVITHTMEHV 239 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccC-----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHHHH
Confidence 3344555666678999999995321 122223334444444322 2 34577777776644
No 422
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.87 E-value=1.2e+02 Score=24.82 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=30.5
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. . ..||.+|++++.+.
T Consensus 155 ~laral~~~p~llllDEP~~~L-----------D~~~~~~l~~~l~~~~~----~-~tii~~sh~~~~~~ 208 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSAL-----------DPIATHKIEELMEELKK----N-YTIVIVTHSMQQAR 208 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccC-----------CHHHHHHHHHHHHHHhc----C-CeEEEEecCHHHHH
Confidence 3455556689999999954311 22223444445555432 2 46777777765433
No 423
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=36.86 E-value=55 Score=26.55 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=28.4
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+..|-...|.||++||--.-+ +......+..++..+. ...+..||.+|++++.+
T Consensus 136 laral~~~p~vllLDEPt~~L-----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 189 (230)
T TIGR02770 136 IALALLLEPPFLIADEPTTDL-----------DVVNQARVLKLLRELR---QLFGTGILLITHDLGVV 189 (230)
T ss_pred HHHHHhcCCCEEEEcCCcccc-----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 444555679999999954321 2222333334444332 22234567777766544
No 424
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=36.81 E-value=48 Score=27.76 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+-.+..|-...|.+|++||--.-+ +......+..++..+ ....+..+|.+|++++.+.
T Consensus 159 rl~laral~~~p~lllLDEPt~~L-----------D~~~~~~~~~~l~~~---~~~~~~tiiivsH~~~~i~ 216 (268)
T PRK10419 159 RVCLARALAVEPKLLILDEAVSNL-----------DLVLQAGVIRLLKKL---QQQFGTACLFITHDLRLVE 216 (268)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccc-----------CHHHHHHHHHHHHHH---HHHcCcEEEEEECCHHHHH
Confidence 334555666789999999953321 122223333333333 2222446777777766543
No 425
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=36.74 E-value=1.1e+02 Score=25.71 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=30.3
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. . .+..+|.+|++.+.++
T Consensus 153 ~Laral~~~p~iLlLDEPt~gL-----------D~~~~~~l~~~L~~~~---~-~g~tiIiisH~~~~i~ 207 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVG-----------DQTFAQKCLDKIYEFK---E-QNKTIFFVSHNLGQVR 207 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccC-----------CHHHHHHHHHHHHHHH---H-CCCEEEEEcCCHHHHH
Confidence 4556666789999999954321 1122233333443332 2 2446777777766554
No 426
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=36.70 E-value=2e+02 Score=23.10 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeC
Q psy5642 25 ESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATN 96 (237)
Q Consensus 25 ~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 96 (237)
+....+..+-+......|.+++||-+..+.... + ....+..+..+...+.. .++.++.|+.
T Consensus 99 ~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~-~------~~~~r~~l~~l~~~l~~----~~~t~llt~~ 159 (226)
T PF06745_consen 99 DLEELLSKIREAIEELKPDRVVIDSLSALLLYD-D------PEELRRFLRALIKFLKS----RGVTTLLTSE 159 (226)
T ss_dssp CHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS-S------GGGHHHHHHHHHHHHHH----TTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC-C------HHHHHHHHHHHHHHHHH----CCCEEEEEEc
Confidence 445566666666777788999999999992221 1 12335566667777644 3455555555
No 427
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=36.67 E-value=52 Score=27.48 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.||++||--.-+ +......+..++..+. ...+..||.+|++++.+
T Consensus 159 ~laral~~~p~lllLDEPt~~L-----------D~~~~~~l~~~l~~~~---~~~g~tviivsH~~~~~ 213 (267)
T PRK15112 159 GLARALILRPKVIIADEALASL-----------DMSMRSQLINLMLELQ---EKQGISYIYVTQHLGMM 213 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHH---HHcCcEEEEEeCCHHHH
Confidence 3444555679999999954321 1222333333343332 22234567777776544
No 428
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=36.51 E-value=52 Score=26.44 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=29.5
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. ...+..||.+|++++.+
T Consensus 155 ~laral~~~p~lllLDEPt~~L-----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 209 (228)
T cd03257 155 AIARALALNPKLLIADEPTSAL-----------DVSVQAQILDLLKKLQ---EELGLTLLFITHDLGVV 209 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCC-----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 3444555679999999953311 2222333444444432 22234677777776543
No 429
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=36.47 E-value=64 Score=25.06 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
-.+.+|-...|.++++||--.-+ +......+..++..+.. ..+..+|.+|++++.+
T Consensus 106 l~laral~~~p~llllDEP~~~L-----------D~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~~ 161 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHL-----------DIAHQIELLELLRRLAR---ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCC-----------CHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 34556666789999999953321 12223334444444322 2234567777776654
No 430
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=36.34 E-value=57 Score=26.13 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=14.3
Q ss_pred HHHHHHhcCCeEEEEccccc
Q psy5642 33 VFKRARQVSPSVIFFDELDS 52 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~ 52 (237)
.+..|-...|.++++||-..
T Consensus 131 ala~al~~~p~illlDEP~~ 150 (204)
T cd03240 131 ALAETFGSNCGILALDEPTT 150 (204)
T ss_pred HHHHHhccCCCEEEEcCCcc
Confidence 34445556899999999654
No 431
>KOG0991|consensus
Probab=36.33 E-value=2.4e+02 Score=23.94 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=54.2
Q ss_pred EEEecccccccccChHHHHHHHHHHHHHhc-CCe---EEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 11 VESIGPELFRKYVGESERCVRDVFKRARQV-SPS---VIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 11 i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-~P~---il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+++++|+-.+. +..++--+.|.+-+-. .|+ ||++||+|+..... ...+...|+-+..
T Consensus 82 LELNASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA---------------QQAlRRtMEiyS~- 142 (333)
T KOG0991|consen 82 LELNASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA---------------QQALRRTMEIYSN- 142 (333)
T ss_pred hhccCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH---------------HHHHHHHHHHHcc-
Confidence 44555543332 3445555556554432 344 99999999874321 1122222222211
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHc
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~ 134 (237)
..-+..++|..+.|=+.+.+ |.. .+.+...+.++...=|....+
T Consensus 143 -ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k 186 (333)
T KOG0991|consen 143 -TTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAK 186 (333)
T ss_pred -cchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHH
Confidence 23356677888888888887 764 356666666655444444443
No 432
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.28 E-value=56 Score=26.22 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=29.0
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.- -+......+..++..+ ....+..||.+|++++.+
T Consensus 141 ~la~al~~~p~lllLDEPt~~-----------LD~~~~~~~~~~l~~~---~~~~~~tiii~sH~~~~~ 195 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSA-----------LDALTREQLQEELLDI---WRETGKTVLLVTHDIDEA 195 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCC-----------CCHHHHHHHHHHHHHH---HHHcCCEEEEEecCHHHH
Confidence 344455568999999994331 1222233333444433 111234577777776643
No 433
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=36.23 E-value=23 Score=32.30 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=32.1
Q ss_pred ceEEEEEecccccc-cccC-hHHHHHHHHHHHHHhcCCe
Q psy5642 7 LTEVVESIGPELFR-KYVG-ESERCVRDVFKRARQVSPS 43 (237)
Q Consensus 7 ~~~~i~v~~s~l~~-~~~g-~~~~~l~~~f~~a~~~~P~ 43 (237)
+++|+.++++.+.. .|+| +.+..++++|+.|..+.|+
T Consensus 75 ~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~ 113 (443)
T PRK05201 75 NAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVRE 113 (443)
T ss_pred CChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHH
Confidence 67999999998875 7999 7899999999999776665
No 434
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=36.18 E-value=95 Score=24.98 Aligned_cols=58 Identities=17% Similarity=0.070 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 29 CVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 29 ~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..++.. ...|+++++||+..=.. ......+...++..+... +..+|.+|+..+.++
T Consensus 98 ~~~~il~~--~~~~~lvllDE~~~gt~----------~~~~~~l~~~il~~l~~~----~~~~i~~TH~~~l~~ 155 (204)
T cd03282 98 ETAYILDY--ADGDSLVLIDELGRGTS----------SADGFAISLAILECLIKK----ESTVFFATHFRDIAA 155 (204)
T ss_pred HHHHHHHh--cCCCcEEEeccccCCCC----------HHHHHHHHHHHHHHHHhc----CCEEEEECChHHHHH
Confidence 45555543 34689999999643110 111123344455555442 446777888766554
No 435
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=36.05 E-value=61 Score=26.43 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+..|-...|.+|++||--.-+ +......+..++..+.. ..+..+|.+|++++.+
T Consensus 156 la~al~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~---~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASL-----------DPKTSKQVMDYLKRINK---EDGITVIINLHQVDLA 209 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHH
Confidence 344445679999999953321 22223344444444321 1234577777766544
No 436
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=36.00 E-value=84 Score=26.07 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEE
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAA 94 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t 94 (237)
.+.=|-+..+|-++.|-++++||--+-+- -+++.+.|..|..+...+--++|.|
T Consensus 140 GQqQRVAIARALaM~P~vmLFDEPTSALD--------------PElv~EVL~vm~~LA~eGmTMivVT 193 (240)
T COG1126 140 GQQQRVAIARALAMDPKVMLFDEPTSALD--------------PELVGEVLDVMKDLAEEGMTMIIVT 193 (240)
T ss_pred HHHHHHHHHHHHcCCCCEEeecCCcccCC--------------HHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 44456677888899999999999533211 3456677777666655443444444
No 437
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.96 E-value=62 Score=25.97 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. ...+..||.+|++++.+.
T Consensus 141 ~la~al~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~---~~~~~tvi~~tH~~~~~~ 196 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGL-----------DPQTRAHVWEYIEKLK---EEFGMTILLTTHYMEEAE 196 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCC-----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 4555566689999999953321 1222333444444432 222345677777766443
No 438
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=35.84 E-value=1.3e+02 Score=23.82 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCeEEEEccc
Q psy5642 31 RDVFKRARQVSPSVIFFDEL 50 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDei 50 (237)
+-.+..|-...|.+|++||-
T Consensus 112 rv~laral~~~p~illlDEP 131 (200)
T cd03217 112 RNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCC
Confidence 34455666678999999994
No 439
>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.
Probab=35.77 E-value=59 Score=24.80 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=32.4
Q ss_pred EecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCC
Q psy5642 116 YVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYS 155 (237)
Q Consensus 116 ~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 155 (237)
-+.+++.++|..-|+.+|...+...+..+.+|..+..|+-
T Consensus 79 LLDl~sdeeR~~~LqelL~~C~~ptE~FI~ELL~kLkgL~ 118 (144)
T PF05361_consen 79 LLDLESDEERRRKLQELLQDCPKPTEDFIQELLSKLKGLR 118 (144)
T ss_dssp HHCTSSTTHHHHHHHHHHTTCSSTTHHHHHHHHHHCTTT-
T ss_pred HhcCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Confidence 3567899999999999998776667889999999887753
No 440
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.68 E-value=55 Score=26.73 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
+..|-...|.+|++||--.-+ +......+..++..+. ...+..||.+|++++.
T Consensus 147 la~al~~~p~llllDEP~~~L-----------D~~~~~~l~~~l~~~~---~~~~~tvii~sH~~~~ 199 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGAL-----------DAKVRKELRRWLRRLH---DELHVTTVFVTHDQEE 199 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH
Confidence 444455679999999953321 2222333444444432 2223457777777653
No 441
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=35.65 E-value=54 Score=26.13 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=28.5
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. ...+..||.+|+++..
T Consensus 140 ~laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~---~~~~~tvi~~sH~~~~ 193 (213)
T cd03301 140 ALGRAIVREPKVFLMDEPLSNL-----------DAKLRVQMRAELKRLQ---QRLGTTTIYVTHDQVE 193 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH
Confidence 3445555689999999953321 2222333444444432 2123456777776543
No 442
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.64 E-value=1.4e+02 Score=23.67 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
-.+..|-...|.+|++||--.- -+......+..++..+. . + ..+|.+|++++.+
T Consensus 139 v~la~al~~~p~llllDEPt~~-----------LD~~~~~~l~~~l~~~~---~-~-~tii~vsH~~~~~ 192 (211)
T cd03264 139 VGIAQALVGDPSILIVDEPTAG-----------LDPEERIRFRNLLSELG---E-D-RIVILSTHIVEDV 192 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCccc-----------CCHHHHHHHHHHHHHHh---C-C-CEEEEEcCCHHHH
Confidence 3455556668999999994321 12222333444444443 2 2 4577777766544
No 443
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.60 E-value=89 Score=26.08 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=30.3
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 152 ~laral~~~p~lllLDEPt~~L-----------D~~~~~~l~~~L~~~~---~~~~~tiiivtH~~~~~ 206 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATSML-----------DPDARQNLLDLVRKVK---SEHNITIISITHDLSEA 206 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCchHH
Confidence 3455556689999999954421 2222333334444432 22234567777777655
No 444
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.48 E-value=1.4e+02 Score=24.48 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+. . ...+|.+|+++..+..
T Consensus 155 v~laral~~~p~llllDEP~~gL-----------D~~~~~~l~~~l~~~~---~--~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSAL-----------DPISTTKIEDLIHKLK---E--DYTIVIVTHNMQQATR 210 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccC-----------CHHHHHHHHHHHHHHh---c--CCeEEEEECCHHHHHh
Confidence 34555556689999999953321 1222334444444442 2 2467777777665544
No 445
>PHA00350 putative assembly protein
Probab=35.39 E-value=41 Score=30.31 Aligned_cols=71 Identities=11% Similarity=0.006 Sum_probs=42.1
Q ss_pred CCeEEEEccccccccccCCCCCCC-----CCch---HHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcc
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGG-----GSNV---QERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLD 112 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~-----~~~~---~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~ 112 (237)
.-++|+|||+..+++.+..-.... .... ....--.+++++..... .+.=||.+|-++..||..++. +.+
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH-~G~DIiliTQ~~~~Id~~iR~--lvE 157 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRH-YNWDIILLTPNIRKIHSDIRA--MIE 157 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcc-cCceEEEEeCCHHHhhHHHHH--hhh
Confidence 447999999999998764411100 0000 00001234445443222 356678889999999999997 776
Q ss_pred cE
Q psy5642 113 RL 114 (237)
Q Consensus 113 ~~ 114 (237)
..
T Consensus 158 ~~ 159 (399)
T PHA00350 158 MT 159 (399)
T ss_pred he
Confidence 53
No 446
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=35.37 E-value=66 Score=26.78 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.+|++||--.-+ +......+..++..+.. ..+..||.+|++++.+
T Consensus 155 rv~laral~~~p~lllLDEPt~~L-----------D~~~~~~~~~~l~~l~~---~~~~tiii~sH~~~~i 211 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSAL-----------DIAHQVDVLALVHRLSQ---ERGLTVIAVLHDINMA 211 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 334555666789999999953321 22223444444444422 1234567777776644
No 447
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=35.32 E-value=1.2e+02 Score=23.70 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=25.6
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD 99 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 99 (237)
..|.++++||.-.-.. ......+...++..+.. ..+..+|.+|++.+
T Consensus 77 ~~~~llllDEp~~g~d----------~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 77 TENSLVLLDELGRGTS----------TYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred CCCeEEEEecCCCCCC----------HHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 3799999999744211 11123344455555433 12345677777764
No 448
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.11 E-value=57 Score=26.07 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=29.1
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.++++||--.- -+......+..++..+. ...+..+|.+|++++.+
T Consensus 141 ~la~al~~~p~llllDEPt~~-----------LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSA-----------LDRALRLQLLPELKQIK---KNLNIPVIFVTHDLSEA 195 (214)
T ss_pred HHHHHHhcCCCEEEEcCCccc-----------CCHHHHHHHHHHHHHHH---HHcCcEEEEEecCHHHH
Confidence 444555568999999994321 12222333334444332 11234577777776654
No 449
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.09 E-value=84 Score=26.29 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=29.5
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. ..++..+|.+|++++.+
T Consensus 152 ~laral~~~p~lllLDEP~~gL-----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTSML-----------DPKGKREIKKIMVDLR---KTRKKTLISITHDMDEA 206 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHH---HhcCcEEEEEEechhHH
Confidence 4455556689999999953321 2222333334444332 22334567777776655
No 450
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=35.07 E-value=57 Score=26.95 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=30.3
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. ...+..||.+|++++.+.
T Consensus 150 ~laral~~~p~lLlLDEPt~~L-----------D~~~~~~l~~~L~~~~---~~~g~til~~sH~~~~~~ 205 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDL-----------DVVAQARILDLLESIV---QKRALGMLLVTHDMGVVA 205 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCccc-----------CHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHHH
Confidence 4455556689999999954321 1222333334443332 122446777777766543
No 451
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=34.58 E-value=64 Score=26.78 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+. ...+..||.+|++++.+.
T Consensus 129 v~laral~~~p~lllLDEPt~~L-----------D~~~~~~l~~~L~~~~---~~~g~tiiivsH~~~~i~ 185 (251)
T PRK09544 129 VLLARALLNRPQLLVLDEPTQGV-----------DVNGQVALYDLIDQLR---RELDCAVLMVSHDLHLVM 185 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCC-----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHH
Confidence 34455556789999999954321 1222333334444332 212345677777766543
No 452
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=34.56 E-value=1.3e+02 Score=24.03 Aligned_cols=19 Identities=16% Similarity=0.217 Sum_probs=13.3
Q ss_pred HHHHHHhcCCeEEEEcccc
Q psy5642 33 VFKRARQVSPSVIFFDELD 51 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid 51 (237)
.+..|-...|.+|++||--
T Consensus 159 ~laral~~~p~llllDEPt 177 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPT 177 (224)
T ss_pred HHHHHHhcCCCEEEEcCCc
Confidence 3444555679999999953
No 453
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.56 E-value=1.4e+02 Score=25.10 Aligned_cols=55 Identities=25% Similarity=0.474 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD 99 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 99 (237)
|-.+.+|.+..|.|||+||=-+ +.+.....+...|+..+... -..-+|..|++.+
T Consensus 153 RvaLARAialdPell~~DEPts-----------GLDPI~a~~~~~LI~~L~~~---lg~T~i~VTHDl~ 207 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTS-----------GLDPISAGVIDELIRELNDA---LGLTVIMVTHDLD 207 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCC-----------CCCcchHHHHHHHHHHHHHh---hCCEEEEEECChH
Confidence 4578888889999999999321 12344445666666666552 2334455555443
No 454
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=34.40 E-value=1.2e+02 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCeEEEEccccc
Q psy5642 30 VRDVFKRARQVSPSVIFFDELDS 52 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid~ 52 (237)
-+-.+..|-...|.+|++||--.
T Consensus 105 qrv~laral~~~p~~lllDEP~~ 127 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTV 127 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc
Confidence 34456666777899999999543
No 455
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=34.38 E-value=1.9e+02 Score=23.11 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHH-HHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA-QMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.+|++||-..-+-. .....+.. .++..+.. .+..+|.+|+.++.+
T Consensus 148 rv~laral~~~p~illlDEPt~~LD~----------~~~~~l~~~~ll~~~~~----~~~tii~~sH~~~~~ 205 (218)
T cd03290 148 RICVARALYQNTNIVFLDDPFSALDI----------HLSDHLMQEGILKFLQD----DKRTLVLVTHKLQYL 205 (218)
T ss_pred HHHHHHHHhhCCCEEEEeCCccccCH----------HHHHHHHHHHHHHHHhc----CCCEEEEEeCChHHH
Confidence 33445555668999999996442211 11122333 15555543 245677788876654
No 456
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.38 E-value=62 Score=25.81 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=13.5
Q ss_pred HHHHHHhcCCeEEEEcccc
Q psy5642 33 VFKRARQVSPSVIFFDELD 51 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid 51 (237)
.+..|-...|.+|++||--
T Consensus 140 ~la~al~~~p~~lllDEPt 158 (213)
T cd03259 140 ALARALAREPSLLLLDEPL 158 (213)
T ss_pred HHHHHHhcCCCEEEEcCCc
Confidence 3445555679999999943
No 457
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=34.33 E-value=2e+02 Score=22.94 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCeEEEEccc
Q psy5642 30 VRDVFKRARQVSPSVIFFDEL 50 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDei 50 (237)
-+-.+..|-...|.+|++||-
T Consensus 147 qrl~la~al~~~p~llllDEP 167 (220)
T cd03245 147 QAVALARALLNDPPILLLDEP 167 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCc
Confidence 334455566668999999995
No 458
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=34.30 E-value=65 Score=26.14 Aligned_cols=55 Identities=9% Similarity=0.162 Sum_probs=28.8
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+..|-...|.+|++||--.-+ +......+..++..+. ...+..+|.+|++++.+.
T Consensus 140 laral~~~p~lllLDEP~~gL-----------D~~~~~~~~~~l~~~~---~~~~~tiii~sH~~~~~~ 194 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSAL-----------DPALRQEMLTLVSQVC---QERQLTLLMVSHSLEDAA 194 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHHH
Confidence 334455679999999953321 1222333334444332 212345677777776554
No 459
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=34.09 E-value=86 Score=25.73 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=34.3
Q ss_pred HHHHHHHHHHh--cCCeEEEEcccccccc------ccCCCCCCCCCchHHHHHHHHHHHhcCCCCCC-CEEEEEEe
Q psy5642 29 CVRDVFKRARQ--VSPSVIFFDELDSLAG------ERGDGGGGGGSNVQERVLAQMLTEMDGIVPLN-NVTIVAAT 95 (237)
Q Consensus 29 ~l~~~f~~a~~--~~P~il~iDeid~l~~------~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~vI~tt 95 (237)
.+.+.+..+.. ....+|+||.++.+.. .+..............+...|+..|..+...+ +|++++-.
T Consensus 67 ~~~d~l~~~~~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 67 AMVEFYVMQNIQAVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHhccccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 44444444432 3467999999998754 22211111112233455666666666554433 45555543
No 460
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=33.99 E-value=1.4e+02 Score=25.38 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK 103 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 103 (237)
-.|..|-...|.+|++||--.= -+...+..+..++..+. . + ..||.+|++++.+..
T Consensus 142 v~la~al~~~p~lliLDEPt~g-----------LD~~~~~~l~~~l~~~~---~-~-~tiii~sH~l~~~~~ 197 (301)
T TIGR03522 142 VGLAQALIHDPKVLILDEPTTG-----------LDPNQLVEIRNVIKNIG---K-D-KTIILSTHIMQEVEA 197 (301)
T ss_pred HHHHHHHhcCCCEEEEcCCccc-----------CCHHHHHHHHHHHHHhc---C-C-CEEEEEcCCHHHHHH
Confidence 3455666778999999994321 12223334444444442 2 2 567888888776544
No 461
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=33.96 E-value=62 Score=26.64 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=29.3
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+ ....+..+|.+|++++.+.
T Consensus 158 ~laral~~~p~vlllDEP~~~L-----------D~~~~~~l~~~l~~~---~~~~~~tii~vsH~~~~~~ 213 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGL-----------DVSVQARLLDLLRGL---VRDLGLAVIIVTHDLGVAR 213 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccC-----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 3444555679999999953211 222233333333332 1222446777777766544
No 462
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.93 E-value=1.4e+02 Score=24.43 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=29.6
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. . + ..||.+|++++.+.
T Consensus 156 ~laral~~~p~lllLDEPt~~L-----------D~~~~~~l~~~l~~~~---~-~-~tiiivtH~~~~~~ 209 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASAL-----------DPISTAKVEELIHELK---K-D-YTIVIVTHNMQQAA 209 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccC-----------CHHHHHHHHHHHHHHh---c-C-CeEEEEeCCHHHHH
Confidence 3445555689999999953321 2222344444444442 2 2 35666777666543
No 463
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=33.85 E-value=37 Score=33.80 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=54.1
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc-cchhccCCCCcccEEEecCC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR-IDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~-ld~al~r~gRf~~~i~~~~P 120 (237)
..+|+|||+..|..... +. +...+..|-..-...+|-+|.||.+|+. +-..++. .|...|.+..-
T Consensus 640 ~iviiiDe~adlm~~~~-----------k~-ve~~i~rLa~~ara~GIHlilatqRps~dVit~ika--nipsrIaf~v~ 705 (858)
T COG1674 640 YIVIIIDEYADLMMVAG-----------KE-LEELIARLAQKGRAAGIHLILATQRPSVDVITGIKA--NIPTRIALRLS 705 (858)
T ss_pred eEEEEEcchHHHhhhhh-----------HH-HHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHh--CCcceEEEEEc
Confidence 45899999999865321 11 3344444443333457899999999887 7777888 89999999998
Q ss_pred CHHHHHHHHH
Q psy5642 121 DDLTRAAILK 130 (237)
Q Consensus 121 ~~~~R~~il~ 130 (237)
+..+.+.|+-
T Consensus 706 s~~dsr~il~ 715 (858)
T COG1674 706 SKIDSRLILG 715 (858)
T ss_pred Cccceeeecc
Confidence 8888888776
No 464
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=33.82 E-value=49 Score=29.37 Aligned_cols=49 Identities=16% Similarity=0.311 Sum_probs=26.2
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhcc
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALL 106 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~ 106 (237)
.+|+|||+|++=-.. + ..+ -.......+...-.+..|+..+..++..+.
T Consensus 204 D~liIDEVDAFP~~~-d-----------~~L---~~Av~~ark~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 204 DLLIIDEVDAFPFSD-D-----------QSL---QYAVKKARKKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred cEEEEeccccccccC-C-----------HHH---HHHHHHhhcccCceEEEecCChHHHHHHhh
Confidence 699999999973321 0 111 112333333344556666666666655443
No 465
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=33.82 E-value=65 Score=26.19 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
.+..|-...|.+|++||--.- -+......+..++..+. ...+..||.+|++++.
T Consensus 124 ~la~al~~~p~lllLDEPt~g-----------LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~ 177 (230)
T TIGR01184 124 AIARALSIRPKVLLLDEPFGA-----------LDALTRGNLQEELMQIW---EEHRVTVLMVTHDVDE 177 (230)
T ss_pred HHHHHHHcCCCEEEEcCCCcC-----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 344555568999999995331 12222333333333332 2223457777777654
No 466
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.76 E-value=71 Score=24.74 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.++++||--.-+ +......+..++..+.. ..+..+|.+|++++.+
T Consensus 108 r~~la~al~~~p~llilDEP~~~L-----------D~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~ 164 (178)
T cd03229 108 RVALARALAMDPDVLLLDEPTSAL-----------DPITRREVRALLKSLQA---QLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 445566667789999999953321 22223344444444432 2234566777765544
No 467
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.75 E-value=1.4e+02 Score=24.48 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=28.8
Q ss_pred HHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 34 FKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 34 f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+..|-...|.++++||--.=+ +......+..++..+.. + ..||.+|++++.++
T Consensus 160 laral~~~p~lllLDEP~~gL-----------D~~~~~~l~~~l~~~~~----~-~tvii~sh~~~~~~ 212 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSAL-----------DPIATAKIEDLIEDLKK----E-YTVIIVTHNMQQAA 212 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHhh----C-ceEEEEEcCHHHHH
Confidence 334444579999999954321 12223334444444432 2 45777777766554
No 468
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=33.69 E-value=1.5e+02 Score=24.31 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 30 VRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
-+-.+..|-...|.+|++||--.-+ +...+..+..++..+. . + ..||.+|++++.+
T Consensus 153 qrv~laral~~~p~llllDEP~~~L-----------D~~~~~~l~~~l~~~~---~-~-~tiii~sH~~~~~ 208 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSAL-----------DPISTLKIEELIQELK---K-D-YTIVIVTHNMQQA 208 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccC-----------CHHHHHHHHHHHHHHh---c-C-CeEEEEEeCHHHH
Confidence 3444555566689999999954321 2222334444444442 2 2 3566777766544
No 469
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=33.59 E-value=3.1e+02 Score=23.59 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhc---CCeEEEEccccccccccCCCCC--CCCCchHHHHHHHHHHHhcCCCC-CCCEEE--EEEeCC--
Q psy5642 28 RCVRDVFKRARQV---SPSVIFFDELDSLAGERGDGGG--GGGSNVQERVLAQMLTEMDGIVP-LNNVTI--VAATNR-- 97 (237)
Q Consensus 28 ~~l~~~f~~a~~~---~P~il~iDeid~l~~~~~~~~~--~~~~~~~~~~~~~ll~~l~~~~~-~~~v~v--I~ttn~-- 97 (237)
..+..++++.+.. -|.++-+|++..++....-... .......=.+...|+..+.+-.. .++.+| +++|..
T Consensus 140 ~~~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~ 219 (309)
T PF10236_consen 140 DVFQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSN 219 (309)
T ss_pred HHHHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccc
Confidence 4566777776643 4889999999999876332111 11112223566777777554333 223333 555543
Q ss_pred -CC--ccchhccCCCCc------c-------------cEEEecCCCHHHHHHHHHHHHcCCCC
Q psy5642 98 -PD--RIDKALLRPGRL------D-------------RLIYVPLPDDLTRAAILKIRLARSPL 138 (237)
Q Consensus 98 -~~--~ld~al~r~gRf------~-------------~~i~~~~P~~~~R~~il~~~l~~~~~ 138 (237)
+. .++.++.....| . ..|+++..+.+|-..++.++....-+
T Consensus 220 ~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l 282 (309)
T PF10236_consen 220 APKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWL 282 (309)
T ss_pred ccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCcc
Confidence 22 456666642222 1 26899989999999999999876544
No 470
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.53 E-value=1.8e+02 Score=23.45 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.+|++||--.-+ +......+..++..+. . ...+|.+|++++.+
T Consensus 146 rv~la~al~~~p~lllLDEP~~~L-----------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 200 (234)
T cd03251 146 RIAIARALLKDPPILILDEATSAL-----------DTESERLVQAALERLM---K--NRTTFVIAHRLSTI 200 (234)
T ss_pred HHHHHHHHhcCCCEEEEeCccccC-----------CHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 334455556689999999953321 1222333344444332 2 23566677776655
No 471
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.49 E-value=1.4e+02 Score=25.04 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+-.+..|-...|.+|++||--.-+ +......+..++..+. .. +..||.+|++++.+.
T Consensus 146 rv~laraL~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~---~~-g~tili~tH~~~~~~ 202 (274)
T PRK13647 146 RVAIAGVLAMDPDVIVLDEPMAYL-----------DPRGQETLMEILDRLH---NQ-GKTVIVATHDVDLAA 202 (274)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCC-----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 334555666789999999953321 2222333334444332 22 445677777766543
No 472
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.49 E-value=1.3e+02 Score=24.40 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.+|++||--.-+ +.. ....+++.|..+.. +..||.+|++++.+
T Consensus 145 rl~la~aL~~~p~llllDEP~~~L-----------D~~---~~~~l~~~l~~~~~--~~tiii~sh~~~~~ 199 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSAL-----------DTH---TEREIQAALRDVSK--GRTTIVIAHRLSTI 199 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccC-----------CHH---HHHHHHHHHHHhcC--CCEEEEEcCCHHHH
Confidence 344556666789999999954321 111 22333444433333 34567777776655
No 473
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.37 E-value=57 Score=26.66 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=29.9
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.-+ +......+..++..+.. ..+..||.+|++++.+
T Consensus 145 ~laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~L~~~~~---~~g~tvii~sH~~~~~ 199 (242)
T cd03295 145 GVARALAADPPLLLMDEPFGAL-----------DPITRDQLQEEFKRLQQ---ELGKTIVFVTHDIDEA 199 (242)
T ss_pred HHHHHHhcCCCEEEecCCcccC-----------CHHHHHHHHHHHHHHHH---HcCCEEEEEecCHHHH
Confidence 4555556689999999953311 12223334444444322 2234577777776644
No 474
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=33.37 E-value=1.3e+02 Score=23.52 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcC--CeEEEEccccc
Q psy5642 30 VRDVFKRARQVS--PSVIFFDELDS 52 (237)
Q Consensus 30 l~~~f~~a~~~~--P~il~iDeid~ 52 (237)
-+-.+..|.... |.++++||--.
T Consensus 94 qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 94 QRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred HHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 344566666778 99999999533
No 475
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.21 E-value=79 Score=23.79 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=14.8
Q ss_pred HHHHHHhcCCeEEEEccccc
Q psy5642 33 VFKRARQVSPSVIFFDELDS 52 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~ 52 (237)
.+..+-...|.++++||...
T Consensus 90 ~l~~~l~~~~~i~ilDEp~~ 109 (157)
T cd00267 90 ALARALLLNPDLLLLDEPTS 109 (157)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 35556666899999999654
No 476
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.18 E-value=77 Score=26.73 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.+|++||--.-+ +......+..++..+ ....+..||.+|++++.+
T Consensus 148 rv~laral~~~p~lllLDEPt~gL-----------D~~~~~~l~~~l~~l---~~~~~~tilivsH~~~~~ 204 (279)
T PRK13635 148 RVAIAGVLALQPDIIILDEATSML-----------DPRGRREVLETVRQL---KEQKGITVLSITHDLDEA 204 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHH---HHcCCCEEEEEecCHHHH
Confidence 334555666789999999954321 222233333333333 222345567777766654
No 477
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.01 E-value=1.4e+02 Score=24.92 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+. .. +..||.+|++++.+.
T Consensus 146 v~laral~~~p~llllDEPt~gL-----------D~~~~~~l~~~l~~l~---~~-~~til~vtH~~~~~~ 201 (275)
T PRK13639 146 VAIAGILAMKPEIIVLDEPTSGL-----------DPMGASQIMKLLYDLN---KE-GITIIISTHDVDLVP 201 (275)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCC-----------CHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 34555566789999999953321 1222333334444432 22 455777777766544
No 478
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=32.96 E-value=65 Score=28.20 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
-.+..|-...|.+|++||--.- -+......+..++..+ ....+..||.+|++++.+
T Consensus 149 v~lAraL~~~p~iLlLDEPts~-----------LD~~~~~~l~~~L~~l---~~~~g~tiilvtH~~~~i 204 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSA-----------LDPATTRSILELLKDI---NRELGLTIVLITHEMDVV 204 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 3445556668999999995321 1222233333344333 222345677788876654
No 479
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=32.69 E-value=81 Score=25.24 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=28.7
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
.+..|-...|.+|++||--.- -+......+..++..+.. ..+..+|.+|++++.
T Consensus 151 ~laral~~~p~illlDEPt~~-----------LD~~~~~~l~~~l~~~~~---~~~~tii~~tH~~~~ 204 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGN-----------LDNNNAKIIFDLMLELNR---ELNTSFLVVTHDLEL 204 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCc-----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 444555568999999995321 122223334444444322 123457777777653
No 480
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.62 E-value=1.6e+02 Score=24.03 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+-.+..|-...|.+|++||--.-+ +......+..++..+. . + ..+|.+|++++.+.
T Consensus 156 rv~laral~~~p~llllDEP~~~L-----------D~~~~~~l~~~l~~~~---~-~-~tiii~sH~~~~~~ 211 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSAL-----------DPASTARIEDLMTDLK---K-V-TTIIIVTHNMHQAA 211 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccC-----------CHHHHHHHHHHHHHHh---c-C-CeEEEEeCCHHHHH
Confidence 334555666789999999953321 1222334444444442 2 2 45677777766544
No 481
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=32.61 E-value=1.8e+02 Score=23.14 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.+|++||-..-+ +......+..++..+ .. + ..+|.+|+++..+
T Consensus 147 r~~laral~~~p~llllDEP~~~L-----------D~~~~~~l~~~l~~~---~~-~-~tii~~sh~~~~~ 201 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASV-----------DPETDALIQKTIREA---FK-D-CTVLTIAHRLDTI 201 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccC-----------CHHHHHHHHHHHHHh---cC-C-CEEEEEeCCHHHH
Confidence 334555666789999999964321 122233344444433 22 2 3567777766554
No 482
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.37 E-value=66 Score=27.20 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 30 VRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-+-.+..|-...|.||++||--.-+ +......+..++..+.. ..+..||.+|++.+.+.
T Consensus 152 qrv~laraL~~~p~illlDEPt~~L-----------D~~~~~~l~~~l~~l~~---~~g~tvl~vtH~~~~~~ 210 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGL-----------DPQSKRQVMRLLKSLQT---DENKTIILVSHDMNEVA 210 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccC-----------CHHHHHHHHHHHHHHHH---hCCCEEEEEecCHHHHH
Confidence 3345566666789999999954321 22223344444444422 23456777777766543
No 483
>KOG0481|consensus
Probab=32.30 E-value=53 Score=30.84 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCEEEEEEeCCCC-------------ccchhccCCCCcccEEEecCCCHHHHH
Q psy5642 87 NNVTIVAATNRPD-------------RIDKALLRPGRLDRLIYVPLPDDLTRA 126 (237)
Q Consensus 87 ~~v~vI~ttn~~~-------------~ld~al~r~gRf~~~i~~~~P~~~~R~ 126 (237)
++.-|+|++|.+- ++-+.+++ |||-++-+.--..+.|-
T Consensus 470 SRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D 520 (729)
T KOG0481|consen 470 SRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERD 520 (729)
T ss_pred chhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhh
Confidence 4566788888653 33488999 99987777655444343
No 484
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.28 E-value=2.7e+02 Score=23.32 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=37.9
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCC----------
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGR---------- 110 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gR---------- 110 (237)
.|.++++||...-+. . .....++..+..... ...+|.+|+++..+ .+-. +
T Consensus 192 ~p~vlllDEp~~~Ld-----------~---~~~~~l~~~l~~~~~--~~tii~isH~~~~~--~~~d--~~~~l~~~~~~ 251 (276)
T cd03241 192 AVPTLIFDEIDTGIS-----------G---EVAQAVGKKLKELSR--SHQVLCITHLPQVA--AMAD--NHFLVEKEVEG 251 (276)
T ss_pred CCCEEEEECCccCCC-----------H---HHHHHHHHHHHHHhC--CCEEEEEechHHHH--HhcC--cEEEEEEecCC
Confidence 899999999554221 1 222333333333222 24577778776522 1111 1
Q ss_pred cccEEEecCCCHHHHHHHHHHHH
Q psy5642 111 LDRLIYVPLPDDLTRAAILKIRL 133 (237)
Q Consensus 111 f~~~i~~~~P~~~~R~~il~~~l 133 (237)
-.....+...+.++|..-+-.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~ 274 (276)
T cd03241 252 GRTVTKVRELDKEERVEEIARML 274 (276)
T ss_pred CeEEEEhhhcChhHHHHHHHHHh
Confidence 12344566667777776655544
No 485
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=32.22 E-value=1.2e+02 Score=19.88 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 186 IVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 186 i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
|..++++|........ ...++.+|+..||+
T Consensus 37 lreiiq~a~kfm~hsk--R~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 37 LREIIQEALKFMRHSK--RTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHHHHHHTT---SSB-HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhC--CCCCCHHHHHHHhC
Confidence 6666666665554333 45699999999985
No 486
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.16 E-value=1.6e+02 Score=24.49 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=28.3
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.= -+......+..++..+.. + ..||.+|++++.+
T Consensus 164 ~laral~~~p~lllLDEPt~g-----------LD~~~~~~l~~~l~~~~~----~-~tiiivtH~~~~~ 216 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSA-----------LDPISTLKIEETMHELKK----N-FTIVIVTHNMQQA 216 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCcc-----------CCHHHHHHHHHHHHHHhc----C-CEEEEEeCCHHHH
Confidence 344455567999999995331 122223334444444422 2 3567777765543
No 487
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=32.15 E-value=1.6e+02 Score=24.47 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+. . + ..||.+|++++.+.
T Consensus 172 l~laral~~~p~lllLDEPt~~L-----------D~~~~~~l~~~l~~~~---~-~-~tiii~tH~~~~~~ 226 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASAL-----------DPISTMQLEETMFELK---K-N-YTIIIVTHNMQQAA 226 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHh---c-C-CEEEEEecCHHHHH
Confidence 34555666789999999953321 1222333334444442 2 2 45777777766543
No 488
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.14 E-value=1.5e+02 Score=25.03 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+.. + ..||.+|++++.+.
T Consensus 191 v~LAraL~~~p~lllLDEPt~gL-----------D~~~~~~l~~~L~~~~~----~-~tvIivsH~~~~~~ 245 (286)
T PRK14275 191 LCVARTLAVEPEILLLDEPTSAL-----------DPKATAKIEDLIQELRG----S-YTIMIVTHNMQQAS 245 (286)
T ss_pred HHHHHHHhcCCCEEEEeCCCccC-----------CHHHHHHHHHHHHHHhc----C-CeEEEEeCCHHHHH
Confidence 34445555689999999953311 22223334444444422 2 45777777766553
No 489
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.11 E-value=2.3e+02 Score=25.07 Aligned_cols=53 Identities=11% Similarity=0.250 Sum_probs=28.4
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcc
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLD 112 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~ 112 (237)
.|.||+|||+-+=+- . .-...++..+... +.-|+.||.+++.+++.-. ++.++
T Consensus 302 ~~pilLLDD~~seLD-----------~---~~r~~l~~~l~~~----~~qv~it~~~~~~~~~~~~-~~~~~ 354 (365)
T TIGR00611 302 EYPILLLDDVASELD-----------D---QRRRLLAELLQSL----GVQVFVTAISLDHLKEMWD-PNRVT 354 (365)
T ss_pred CCCEEEEcCchhccC-----------H---HHHHHHHHHHhhc----CCEEEEEecChhhccchhc-ccceE
Confidence 688999999754221 1 1123344444332 2246677777776655433 23444
No 490
>PRK05907 hypothetical protein; Provisional
Probab=32.10 E-value=3.4e+02 Score=23.51 Aligned_cols=77 Identities=13% Similarity=-0.040 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCCCCCEEEEEEeCCCCc---cchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHH
Q psy5642 73 LAQMLTEMDGIVPLNNVTIVAATNRPDR---IDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELV 148 (237)
Q Consensus 73 ~~~ll~~l~~~~~~~~v~vI~ttn~~~~---ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la 148 (237)
...|...+++..+ ..++||.+.+ .+. +...+...+.+...++++.+...+-...+...++..+.. ....++.++
T Consensus 86 ~~~L~~Yl~np~~-~~~liv~~~~-~d~~kkl~K~i~k~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~ 163 (311)
T PRK05907 86 QEFLIRYARNPNP-HLTLFLFTTK-QECFSSLSKKLSSALCLSLFGEWFADRDKRIAQLLIQRAKELGISCSLGLASLFV 163 (311)
T ss_pred HHHHHHHHhCCCC-CeEEEEEEec-ccHHHHHHHHHhhcceeccccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 4567888888544 2344433332 222 222333222233335788888888899999988877765 555666677
Q ss_pred HHC
Q psy5642 149 RLT 151 (237)
Q Consensus 149 ~~t 151 (237)
.++
T Consensus 164 ~~~ 166 (311)
T PRK05907 164 SKF 166 (311)
T ss_pred HHc
Confidence 766
No 491
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=32.08 E-value=1.5e+02 Score=24.27 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=29.4
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.+..|-...|.+|++||--.-+ +......+..++..+. . + ..||.+|++++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~---~-~-~tvii~tH~~~~~~ 212 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASAL-----------DPIATQKIEELIHELK---A-R-YTIIIVTHNMQQAA 212 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHh---c-C-CeEEEEEecHHHHH
Confidence 3444555679999999954321 2222333444444442 2 2 35677777766543
No 492
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=32.08 E-value=3.3e+02 Score=23.46 Aligned_cols=40 Identities=23% Similarity=0.099 Sum_probs=31.4
Q ss_pred cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 113 RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 113 ~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
..+.+..|+..+...++...++..+.. ....+..|+..+.
T Consensus 135 ~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g 175 (343)
T PRK06585 135 AAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLG 175 (343)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhC
Confidence 356777899999999999999888766 5666777777664
No 493
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=31.95 E-value=1.6e+02 Score=24.30 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=28.7
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--.=+ +......+..++..+. . + ..||.+|++++.+
T Consensus 166 ~laral~~~p~lllLDEPt~~L-----------D~~~~~~l~~~L~~~~---~-~-~tiii~sH~~~~~ 218 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSAL-----------DPISTGRIEELITELK---Q-D-YTVVIVTHNMQQA 218 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccC-----------CHHHHHHHHHHHHHHh---c-C-CeEEEEeCCHHHH
Confidence 4455555689999999953321 2222333444444442 2 2 3567777766544
No 494
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=31.91 E-value=1.4e+02 Score=24.25 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=14.7
Q ss_pred HHHHHHhcCCeEEEEccccc
Q psy5642 33 VFKRARQVSPSVIFFDELDS 52 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~ 52 (237)
.+..|-...|.+|++||--.
T Consensus 149 ~la~al~~~p~llllDEP~~ 168 (238)
T cd03249 149 AIARALLRNPKILLLDEATS 168 (238)
T ss_pred HHHHHHhcCCCEEEEeCccc
Confidence 45556667899999999543
No 495
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.43 E-value=69 Score=26.01 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.++++||-..=+ +......+..++..+.. ..+..+|.+|++++.+
T Consensus 138 rl~laral~~~p~llllDEP~~gL-----------D~~~~~~l~~~l~~~~~---~~~~tiii~sh~~~~~ 194 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGAL-----------DLKLRKDMQLELKRLQK---ELGITFVFVTHDQEEA 194 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHHH---HcCCEEEEEeCCHHHH
Confidence 344555666689999999954321 22223334444444322 2234566667766554
No 496
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=31.42 E-value=1.3e+02 Score=25.78 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCeEEEEccccc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDS 52 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~ 52 (237)
+-.+..|-...|.+|++||--.
T Consensus 173 rvalA~aL~~~P~lLlLDEPt~ 194 (305)
T PRK13651 173 RVALAGILAMEPDFLVFDEPTA 194 (305)
T ss_pred HHHHHHHHHhCCCEEEEeCCCC
Confidence 3445566667899999999543
No 497
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.20 E-value=1.5e+02 Score=24.35 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+-.+..|-...|.+|++||--.-+ +......+..++..+.. . ..||.+|++++.+.
T Consensus 156 rl~laral~~~p~llllDEP~~gL-----------D~~~~~~l~~~l~~~~~----~-~tiiivsH~~~~~~ 211 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASAL-----------DPISTLKIEELIEELKE----K-YTIIIVTHNMQQAA 211 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccC-----------CHHHHHHHHHHHHHHHh----C-CcEEEEECCHHHHH
Confidence 334555556689999999953311 22223334444444432 2 35677777765543
No 498
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.13 E-value=78 Score=25.91 Aligned_cols=57 Identities=16% Similarity=0.302 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-.+..|-...|.+|++||--.-+ +......+..++..+.. ..+..||.+|++++.+.
T Consensus 140 l~la~al~~~p~llllDEPt~~L-----------D~~~~~~l~~~l~~~~~---~~g~tii~~sH~~~~~~ 196 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSAL-----------DPTSTEIIEELIVKLKN---KMNLTVIWITHNMEQAK 196 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccC-----------CHHHHHHHHHHHHHHHH---hCCCEEEEEeccHHHHH
Confidence 34555556689999999954321 12223344444444422 12335666777766543
No 499
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=31.03 E-value=76 Score=27.88 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+.+|-...|.+|++||--.-+ +. .....++..|..+....++.||.+|+..+.+
T Consensus 148 RV~IARAL~~~P~iLLlDEPts~L-----------D~---~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v 204 (343)
T TIGR02314 148 RVAIARALASNPKVLLCDEATSAL-----------DP---ATTQSILELLKEINRRLGLTILLITHEMDVV 204 (343)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccC-----------CH---HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 345556666789999999954321 12 2233344444443332345678888876644
No 500
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=31.02 E-value=72 Score=27.90 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD 99 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 99 (237)
.+.=+-++.+|-+..|.+|++||=-. .....+...|-.+|..+..+-++.+++.|.+++
T Consensus 141 GQrQRVALARALA~eP~vLLLDEPf~--------------ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 141 GQRQRVALARALAVEPKVLLLDEPFG--------------ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred HHHHHHHHHHHhhcCCCeEeecCCch--------------hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 44455667778888999999999211 111456677777777766656777888888755
Done!