Query psy5642
Match_columns 237
No_of_seqs 131 out of 1646
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 22:51:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2.2E-40 7.6E-45 290.9 18.8 200 6-235 206-405 (405)
2 4b4t_I 26S protease regulatory 100.0 2.8E-39 9.7E-44 284.9 15.8 193 6-228 240-432 (437)
3 4b4t_M 26S protease regulatory 100.0 3.6E-38 1.2E-42 280.3 19.5 190 6-225 239-428 (434)
4 4b4t_L 26S protease subunit RP 100.0 5.9E-38 2E-42 279.2 20.5 192 6-227 239-430 (437)
5 3cf2_A TER ATPase, transitiona 100.0 3E-40 1E-44 312.1 4.7 205 5-237 534-761 (806)
6 4b4t_H 26S protease regulatory 100.0 6.8E-38 2.3E-42 278.5 18.8 199 6-234 267-466 (467)
7 4b4t_K 26S protease regulatory 100.0 2.6E-37 9.1E-42 274.5 17.9 192 6-227 230-423 (428)
8 3cf2_A TER ATPase, transitiona 100.0 3.1E-33 1.1E-37 264.3 14.7 189 5-224 261-464 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 4.4E-31 1.5E-35 227.9 22.9 198 7-237 71-317 (322)
10 3cf0_A Transitional endoplasmi 100.0 2.1E-31 7.1E-36 227.8 16.1 203 7-237 74-299 (301)
11 3eie_A Vacuolar protein sortin 100.0 1.9E-30 6.3E-35 223.8 18.0 197 7-236 76-315 (322)
12 2qp9_X Vacuolar protein sortin 100.0 5.8E-30 2E-34 223.6 19.0 197 7-236 109-348 (355)
13 2zan_A Vacuolar protein sortin 100.0 2E-29 6.7E-34 226.3 17.4 198 7-237 193-439 (444)
14 2x8a_A Nuclear valosin-contain 100.0 4E-29 1.4E-33 211.0 17.8 191 7-228 69-273 (274)
15 2ce7_A Cell division protein F 99.9 2.4E-26 8.4E-31 207.0 19.4 185 7-221 74-258 (476)
16 3hu3_A Transitional endoplasmi 99.9 2.3E-26 8E-31 208.2 17.8 186 7-223 263-463 (489)
17 3d8b_A Fidgetin-like protein 1 99.9 7.3E-26 2.5E-30 197.8 19.0 197 7-236 142-351 (357)
18 1ypw_A Transitional endoplasmi 99.9 8.4E-30 2.9E-34 243.2 -7.5 203 7-237 536-761 (806)
19 3b9p_A CG5977-PA, isoform A; A 99.9 1.3E-25 4.5E-30 190.7 19.2 197 7-236 79-289 (297)
20 1lv7_A FTSH; alpha/beta domain 99.9 7.4E-25 2.5E-29 182.6 21.1 185 7-221 70-254 (257)
21 3vfd_A Spastin; ATPase, microt 99.9 1.1E-24 3.8E-29 192.2 19.5 198 6-236 172-382 (389)
22 3h4m_A Proteasome-activating n 99.9 3.4E-24 1.2E-28 180.9 20.3 184 7-220 76-259 (285)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.1E-24 3.6E-29 181.5 13.0 187 7-222 64-252 (262)
24 2dhr_A FTSH; AAA+ protein, hex 99.9 2.8E-24 9.4E-29 194.6 15.3 186 7-222 89-274 (499)
25 1ixz_A ATP-dependent metallopr 99.9 2.8E-23 9.5E-28 172.8 17.3 180 8-217 75-254 (254)
26 1iy2_A ATP-dependent metallopr 99.9 3.3E-22 1.1E-26 168.6 18.1 180 8-217 99-278 (278)
27 2r62_A Cell division protease 99.9 3.4E-25 1.2E-29 185.5 -2.3 191 7-226 69-260 (268)
28 3t15_A Ribulose bisphosphate c 99.8 1.8E-20 6.3E-25 159.3 9.2 147 7-161 61-222 (293)
29 1ypw_A Transitional endoplasmi 99.8 2.6E-19 9E-24 170.9 18.0 187 7-224 263-464 (806)
30 2c9o_A RUVB-like 1; hexameric 99.6 9.9E-18 3.4E-22 150.7 -9.7 148 7-164 90-261 (456)
31 3aji_B S6C, proteasome (prosom 99.5 1.2E-14 4E-19 100.5 5.9 82 121-232 2-83 (83)
32 3vlf_B 26S protease regulatory 99.5 2.1E-14 7.3E-19 100.2 6.9 85 121-234 2-87 (88)
33 2krk_A 26S protease regulatory 99.5 1.9E-14 6.5E-19 100.0 5.7 78 116-222 7-84 (86)
34 3kw6_A 26S protease regulatory 99.5 4.6E-14 1.6E-18 96.3 6.8 75 118-221 1-75 (78)
35 3syl_A Protein CBBX; photosynt 99.5 4.5E-13 1.6E-17 113.7 12.2 131 7-150 99-235 (309)
36 3uk6_A RUVB-like 2; hexameric 99.3 6.5E-12 2.2E-16 109.0 10.9 145 27-220 166-331 (368)
37 2dzn_B 26S protease regulatory 99.3 4.3E-13 1.5E-17 92.3 1.8 80 123-231 1-81 (82)
38 3m6a_A ATP-dependent protease 99.3 2.6E-12 8.8E-17 117.8 6.8 176 7-220 133-342 (543)
39 1d2n_A N-ethylmaleimide-sensit 99.3 1.3E-11 4.3E-16 103.2 10.1 139 7-155 89-230 (272)
40 1ofh_A ATP-dependent HSL prote 99.2 9.3E-11 3.2E-15 99.0 13.0 182 7-220 75-300 (310)
41 1r6b_X CLPA protein; AAA+, N-t 99.2 1.3E-10 4.4E-15 110.4 15.2 180 6-220 241-434 (758)
42 2z4s_A Chromosomal replication 99.1 1.6E-10 5.4E-15 103.3 8.8 169 7-221 160-334 (440)
43 1g41_A Heat shock protein HSLU 99.1 1.5E-11 5.2E-16 109.5 0.9 110 7-129 75-188 (444)
44 3hws_A ATP-dependent CLP prote 99.0 1.6E-09 5.5E-14 94.1 12.4 180 7-216 76-346 (363)
45 2v1u_A Cell division control p 99.0 4.3E-09 1.5E-13 91.1 14.9 134 7-152 78-236 (387)
46 3pfi_A Holliday junction ATP-d 99.0 8.3E-09 2.8E-13 88.4 15.1 126 7-158 80-222 (338)
47 1qvr_A CLPB protein; coiled co 99.0 6.9E-10 2.4E-14 106.7 7.1 138 6-157 225-374 (854)
48 1hqc_A RUVB; extended AAA-ATPa 98.9 9.2E-09 3.1E-13 87.4 12.8 139 7-170 63-218 (324)
49 2chg_A Replication factor C sm 98.9 1.5E-08 5.3E-13 80.4 13.1 150 7-217 68-224 (226)
50 3bos_A Putative DNA replicatio 98.9 5.1E-09 1.7E-13 84.7 9.2 154 8-217 81-241 (242)
51 3pxg_A Negative regulator of g 98.9 5.7E-09 2E-13 93.9 10.3 123 6-157 235-367 (468)
52 1l8q_A Chromosomal replication 98.9 4.4E-09 1.5E-13 89.8 9.1 133 7-158 65-203 (324)
53 1jbk_A CLPB protein; beta barr 98.9 9.8E-10 3.3E-14 85.5 4.0 110 6-129 77-194 (195)
54 1njg_A DNA polymerase III subu 98.9 1.4E-08 4.9E-13 81.6 11.0 137 27-217 108-249 (250)
55 1fnn_A CDC6P, cell division co 98.8 2.3E-07 7.9E-12 80.4 16.4 179 7-228 73-283 (389)
56 3te6_A Regulatory protein SIR3 98.8 1.2E-08 4.3E-13 87.1 7.9 111 7-135 80-213 (318)
57 3pxi_A Negative regulator of g 98.8 5.5E-08 1.9E-12 92.3 12.5 121 6-155 235-365 (758)
58 2qby_B CDC6 homolog 3, cell di 98.7 1.1E-07 3.7E-12 82.5 13.0 132 7-159 81-238 (384)
59 3pvs_A Replication-associated 98.7 5.7E-08 2E-12 86.8 11.2 159 7-222 75-247 (447)
60 2qby_A CDC6 homolog 1, cell di 98.7 2.2E-07 7.4E-12 80.2 14.0 112 27-152 113-232 (386)
61 3pxi_A Negative regulator of g 98.7 7E-08 2.4E-12 91.6 11.6 132 6-158 548-712 (758)
62 4fcw_A Chaperone protein CLPB; 98.7 1.7E-07 5.8E-12 79.0 11.1 133 7-158 75-266 (311)
63 1um8_A ATP-dependent CLP prote 98.6 2.5E-07 8.6E-12 80.5 11.3 181 7-217 97-363 (376)
64 2r44_A Uncharacterized protein 98.6 4.8E-07 1.6E-11 77.2 12.4 77 43-136 111-201 (331)
65 1r6b_X CLPA protein; AAA+, N-t 98.6 2E-07 7E-12 88.4 11.0 140 7-165 513-710 (758)
66 1g8p_A Magnesium-chelatase 38 98.6 6.3E-07 2.2E-11 76.7 12.3 76 41-133 144-232 (350)
67 2p65_A Hypothetical protein PF 98.6 4.9E-08 1.7E-12 75.6 4.5 103 6-121 77-187 (187)
68 3u61_B DNA polymerase accessor 98.5 7.7E-07 2.6E-11 75.7 12.0 121 7-153 73-207 (324)
69 1sxj_D Activator 1 41 kDa subu 98.5 1.3E-06 4.4E-11 74.8 13.1 93 41-153 133-226 (353)
70 1sxj_A Activator 1 95 kDa subu 98.5 2.7E-07 9.2E-12 83.9 8.9 128 7-152 102-242 (516)
71 2chq_A Replication factor C sm 98.5 5.8E-07 2E-11 75.7 9.8 125 7-153 68-195 (319)
72 1sxj_B Activator 1 37 kDa subu 98.5 1.3E-06 4.6E-11 73.6 12.0 120 8-153 73-200 (323)
73 1jr3_A DNA polymerase III subu 98.5 7.9E-07 2.7E-11 76.7 10.2 109 29-158 103-216 (373)
74 2c9o_A RUVB-like 1; hexameric 98.4 1.3E-06 4.5E-11 78.1 10.2 129 42-220 296-438 (456)
75 1iqp_A RFCS; clamp loader, ext 98.3 3.5E-06 1.2E-10 71.1 11.3 93 41-153 110-203 (327)
76 1qvr_A CLPB protein; coiled co 98.3 1.9E-06 6.5E-11 82.8 10.7 134 6-158 615-807 (854)
77 3f9v_A Minichromosome maintena 98.3 4E-06 1.4E-10 77.5 11.8 160 42-221 392-589 (595)
78 1in4_A RUVB, holliday junction 98.3 1.2E-05 4.1E-10 68.9 13.6 68 88-158 150-218 (334)
79 1g41_A Heat shock protein HSLU 98.3 2.5E-05 8.5E-10 69.5 15.1 172 27-231 238-442 (444)
80 3nbx_X ATPase RAVA; AAA+ ATPas 98.1 5.9E-06 2E-10 74.7 8.3 76 41-133 109-196 (500)
81 1a5t_A Delta prime, HOLB; zinc 98.1 1.8E-05 6.2E-10 67.7 10.9 104 27-154 90-197 (334)
82 1w5s_A Origin recognition comp 98.0 7.1E-05 2.4E-09 65.1 12.3 102 40-152 137-250 (412)
83 1sxj_E Activator 1 40 kDa subu 98.0 1.7E-05 5.7E-10 68.0 8.1 93 41-153 134-228 (354)
84 2gno_A DNA polymerase III, gam 97.5 0.00022 7.4E-09 60.4 7.5 99 8-133 50-152 (305)
85 3k1j_A LON protease, ATP-depen 97.5 0.0004 1.4E-08 64.2 9.5 132 41-218 201-374 (604)
86 1sxj_C Activator 1 40 kDa subu 97.5 0.00045 1.5E-08 58.9 8.8 93 41-153 110-203 (340)
87 3cmw_A Protein RECA, recombina 97.2 0.00035 1.2E-08 71.1 5.8 77 20-98 1135-1218(1706)
88 1ojl_A Transcriptional regulat 97.1 0.00031 1.1E-08 59.3 4.2 107 6-134 52-191 (304)
89 4akg_A Glutathione S-transfera 97.1 0.0011 3.8E-08 70.3 8.7 113 7-135 1293-1433(2695)
90 2bjv_A PSP operon transcriptio 97.0 0.0035 1.2E-07 51.3 9.6 75 41-133 100-194 (265)
91 2qen_A Walker-type ATPase; unk 96.6 0.04 1.4E-06 46.1 13.2 107 37-156 124-240 (350)
92 2r2a_A Uncharacterized protein 96.5 0.0029 1E-07 50.0 4.8 73 40-125 86-158 (199)
93 2fna_A Conserved hypothetical 96.4 0.042 1.4E-06 46.1 12.0 111 30-157 124-245 (357)
94 1jr3_D DNA polymerase III, del 96.4 0.048 1.6E-06 46.2 12.3 106 28-153 59-176 (343)
95 3n70_A Transport activator; si 96.4 0.0018 6.2E-08 48.2 2.9 66 6-98 51-116 (145)
96 3co5_A Putative two-component 96.2 0.0035 1.2E-07 46.5 3.6 83 9-119 53-141 (143)
97 3f8t_A Predicted ATPase involv 95.6 0.11 3.8E-06 46.4 11.2 153 43-220 302-484 (506)
98 1ny5_A Transcriptional regulat 95.1 0.033 1.1E-06 48.4 6.2 107 6-134 187-326 (387)
99 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.015 5.1E-07 49.5 3.7 93 7-105 150-242 (331)
100 2kjq_A DNAA-related protein; s 91.9 0.09 3.1E-06 39.2 2.7 77 9-118 66-146 (149)
101 4akg_A Glutathione S-transfera 91.5 0.74 2.5E-05 49.4 9.8 108 7-132 670-792 (2695)
102 3cmu_A Protein RECA, recombina 89.8 0.24 8.1E-06 51.6 4.2 71 25-96 1489-1562(2050)
103 3vkg_A Dynein heavy chain, cyt 89.3 0.65 2.2E-05 50.4 7.2 83 43-134 1376-1470(3245)
104 4ag6_A VIRB4 ATPase, type IV s 88.3 5.7 0.00019 33.9 11.5 125 8-152 223-361 (392)
105 3dzd_A Transcriptional regulat 86.0 0.82 2.8E-05 39.2 4.8 75 42-134 223-317 (368)
106 1ye8_A Protein THEP1, hypothet 85.5 5.9 0.0002 30.0 9.1 67 38-122 96-165 (178)
107 1svm_A Large T antigen; AAA+ f 82.6 0.35 1.2E-05 41.8 0.9 69 40-119 215-284 (377)
108 2iut_A DNA translocase FTSK; n 80.3 2.3 7.8E-05 38.8 5.4 74 43-130 345-420 (574)
109 3sfz_A APAF-1, apoptotic pepti 78.1 18 0.0006 35.3 11.4 85 41-155 236-321 (1249)
110 3ec2_A DNA replication protein 77.6 3 0.0001 31.2 4.7 45 41-99 100-144 (180)
111 1z6t_A APAF-1, apoptotic prote 74.1 20 0.00067 32.1 9.9 83 41-155 236-321 (591)
112 3vkg_A Dynein heavy chain, cyt 72.7 16 0.00056 40.1 10.0 99 8-131 630-751 (3245)
113 2ehv_A Hypothetical protein PH 68.4 12 0.00039 29.2 6.3 81 27-119 121-207 (251)
114 2ius_A DNA translocase FTSK; n 67.6 5.1 0.00017 36.0 4.3 76 41-130 296-374 (512)
115 2a5y_B CED-4; apoptosis; HET: 64.6 41 0.0014 30.0 9.8 86 41-155 243-330 (549)
116 1n0w_A DNA repair protein RAD5 56.5 16 0.00055 28.2 5.1 27 30-56 108-134 (243)
117 2w0m_A SSO2452; RECA, SSPF, un 55.1 38 0.0013 25.6 7.0 60 27-98 107-168 (235)
118 1xp8_A RECA protein, recombina 54.3 23 0.0008 30.1 6.0 60 37-96 148-209 (366)
119 1e9r_A Conjugal transfer prote 52.3 51 0.0018 28.2 8.0 73 41-134 279-361 (437)
120 1g6h_A High-affinity branched- 51.3 55 0.0019 26.0 7.6 54 33-101 163-216 (257)
121 3cmw_A Protein RECA, recombina 50.1 14 0.00048 38.2 4.4 85 13-97 1481-1567(1706)
122 2yz2_A Putative ABC transporte 49.0 60 0.002 26.0 7.4 56 31-101 146-201 (266)
123 2d2e_A SUFC protein; ABC-ATPas 46.8 39 0.0013 26.8 5.9 54 33-101 153-206 (250)
124 3hr8_A Protein RECA; alpha and 46.6 23 0.00078 30.1 4.7 68 27-94 125-194 (356)
125 2pjz_A Hypothetical protein ST 46.4 82 0.0028 25.2 7.9 20 31-50 136-155 (263)
126 2zu0_C Probable ATP-dependent 46.2 61 0.0021 25.9 7.1 54 33-101 174-227 (267)
127 1g5t_A COB(I)alamin adenosyltr 45.7 42 0.0015 25.9 5.7 73 27-118 102-178 (196)
128 2cvh_A DNA repair and recombin 45.1 16 0.00056 27.7 3.3 15 41-55 105-119 (220)
129 3eod_A Protein HNR; response r 41.9 32 0.0011 23.2 4.2 84 32-136 42-127 (130)
130 3cmu_A Protein RECA, recombina 40.7 23 0.00078 37.3 4.3 67 30-97 795-868 (2050)
131 1vpl_A ABC transporter, ATP-bi 40.4 49 0.0017 26.4 5.6 53 32-99 155-207 (256)
132 2w58_A DNAI, primosome compone 40.4 12 0.00042 28.1 1.9 45 8-54 83-128 (202)
133 1sgw_A Putative ABC transporte 39.3 50 0.0017 25.6 5.3 20 32-51 142-161 (214)
134 3gfo_A Cobalt import ATP-bindi 39.2 83 0.0028 25.4 6.8 57 32-102 152-208 (275)
135 2zr9_A Protein RECA, recombina 38.9 17 0.00058 30.7 2.7 29 27-55 125-153 (349)
136 2oxc_A Probable ATP-dependent 38.3 42 0.0014 25.8 4.8 60 42-117 167-226 (230)
137 2olj_A Amino acid ABC transpor 36.8 57 0.0019 26.2 5.4 54 32-100 168-221 (263)
138 1b0u_A Histidine permease; ABC 36.4 52 0.0018 26.3 5.2 55 31-100 161-215 (262)
139 4a74_A DNA repair and recombin 36.1 24 0.00081 26.9 3.0 85 30-120 109-200 (231)
140 1ji0_A ABC transporter; ATP bi 35.7 54 0.0018 25.7 5.1 18 33-50 149-166 (240)
141 2ff7_A Alpha-hemolysin translo 35.6 1.2E+02 0.0042 23.7 7.2 54 31-100 153-206 (247)
142 2nq2_C Hypothetical ABC transp 35.2 69 0.0023 25.4 5.7 54 33-100 138-191 (253)
143 1cr0_A DNA primase/helicase; R 35.1 20 0.00067 29.0 2.4 21 35-55 141-161 (296)
144 1b67_A Protein (histone HMFA); 35.1 59 0.002 20.1 4.2 33 186-220 36-68 (68)
145 2ghi_A Transport protein; mult 34.7 1.3E+02 0.0043 23.9 7.2 52 33-100 165-216 (260)
146 1j2m_A CPI-17, 17-kDa PKC-pote 34.2 43 0.0015 22.8 3.5 38 117-154 60-97 (99)
147 2pcj_A ABC transporter, lipopr 32.6 1.2E+02 0.0042 23.3 6.7 20 31-50 148-167 (224)
148 2ixe_A Antigen peptide transpo 32.5 67 0.0023 25.8 5.2 20 31-50 164-183 (271)
149 3lda_A DNA repair protein RAD5 32.4 35 0.0012 29.4 3.7 67 29-97 261-327 (400)
150 4a8j_C Elongator complex prote 32.2 58 0.002 26.7 4.7 49 9-57 109-165 (280)
151 3qkt_A DNA double-strand break 31.4 1.2E+02 0.0041 25.0 6.8 21 31-51 262-282 (339)
152 2i3b_A HCR-ntpase, human cance 30.7 91 0.0031 23.4 5.5 15 39-53 103-117 (189)
153 2dr3_A UPF0273 protein PH0284; 30.2 91 0.0031 23.7 5.6 57 29-97 116-172 (247)
154 3cz5_A Two-component response 30.1 1.3E+02 0.0044 20.7 6.0 19 31-49 41-59 (153)
155 3io5_A Recombination and repai 29.9 39 0.0013 28.4 3.4 57 38-94 108-168 (333)
156 3b85_A Phosphate starvation-in 29.7 19 0.00065 27.9 1.4 42 40-102 121-162 (208)
157 2cbz_A Multidrug resistance-as 28.9 1.6E+02 0.0054 22.9 6.8 55 31-101 135-192 (237)
158 3auy_A DNA double-strand break 28.6 92 0.0031 26.1 5.6 20 34-53 297-317 (371)
159 1f2t_B RAD50 ABC-ATPase; DNA d 28.4 1.6E+02 0.0056 21.0 7.4 30 21-50 57-90 (148)
160 3dkp_A Probable ATP-dependent 27.2 21 0.00073 27.7 1.3 15 42-56 176-190 (245)
161 2qgz_A Helicase loader, putati 26.8 30 0.001 28.4 2.2 13 41-53 214-226 (308)
162 2qr3_A Two-component system re 26.3 1.5E+02 0.005 19.8 5.7 91 31-136 37-127 (140)
163 1taf_B TFIID TBP associated fa 26.2 1E+02 0.0036 19.4 4.2 30 186-217 40-69 (70)
164 1t6n_A Probable ATP-dependent 26.1 91 0.0031 23.4 4.8 15 41-55 158-172 (220)
165 2z43_A DNA repair and recombin 26.0 33 0.0011 28.3 2.3 65 29-95 190-255 (324)
166 2b8t_A Thymidine kinase; deoxy 25.6 98 0.0034 24.1 4.9 23 31-53 75-101 (223)
167 2orw_A Thymidine kinase; TMTK, 25.2 59 0.002 24.3 3.4 13 41-53 76-88 (184)
168 3tif_A Uncharacterized ABC tra 25.2 1.7E+02 0.0058 22.7 6.3 55 31-99 153-207 (235)
169 2ihy_A ABC transporter, ATP-bi 24.2 97 0.0033 25.0 4.8 18 33-50 171-188 (279)
170 4g1u_C Hemin import ATP-bindin 23.9 40 0.0014 27.1 2.4 47 41-101 165-211 (266)
171 3b2n_A Uncharacterized protein 23.9 1.7E+02 0.0057 19.5 5.8 17 33-49 41-57 (133)
172 3kta_B Chromosome segregation 23.4 1.6E+02 0.0056 21.7 5.6 30 24-53 67-98 (173)
173 1vec_A ATP-dependent RNA helic 23.3 29 0.00098 26.0 1.3 15 41-55 146-160 (206)
174 1nlf_A Regulatory protein REPA 23.0 60 0.002 25.8 3.3 17 40-56 132-148 (279)
175 3b0c_W CENP-W, centromere prot 22.6 1.3E+02 0.0045 19.0 4.3 32 186-219 39-70 (76)
176 1uhe_A Aspartate 1-decarboxyla 21.8 60 0.002 22.1 2.5 20 35-54 70-89 (97)
177 4aby_A DNA repair protein RECN 21.8 3.5E+02 0.012 22.5 9.2 16 37-52 309-326 (415)
178 3fe2_A Probable ATP-dependent 21.6 37 0.0013 26.3 1.7 15 41-55 176-190 (242)
179 3iuy_A Probable ATP-dependent 21.5 40 0.0014 25.7 1.9 51 42-107 168-218 (228)
180 1vc3_B L-aspartate-alpha-decar 20.6 52 0.0018 22.3 2.0 19 35-53 72-90 (96)
181 4e7p_A Response regulator; DNA 20.4 2.1E+02 0.0072 19.5 7.2 83 31-136 56-141 (150)
182 1pzn_A RAD51, DNA repair and r 20.1 77 0.0026 26.5 3.4 57 40-100 230-288 (349)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-40 Score=290.93 Aligned_cols=200 Identities=36% Similarity=0.604 Sum_probs=176.2
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+++|+.|+++++.++|+|+++++++.+|..|+.++||||||||+|.+++.+......+ +...+++++.||++|+++..
T Consensus 206 ~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~-~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG-DSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp HTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGG-GGHHHHHHHHHHHHHHTTTC
T ss_pred hCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCC-cHHHHHHHHHHHHhhhccCC
Confidence 47899999999999999999999999999999999999999999999998876554322 34557899999999999988
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
..+|+||||||+|+.||+|++||||||..|+|++|+.++|.+||+.++++.++..++++..||..|+||||+|
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGAD------- 357 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGAD------- 357 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHH-------
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHH-------
Confidence 8899999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQLIKLYENYI 235 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~~~~~~~~~~~ 235 (237)
|.++|++|++.+++++ ...|+.+||..|++.+.|...+..+...+.|+
T Consensus 358 --------------------i~~l~~eA~~~Air~~--~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~k 405 (405)
T 4b4t_J 358 --------------------VKGVCTEAGMYALRER--RIHVTQEDFELAVGKVMNKNQETAISVAKLFK 405 (405)
T ss_dssp --------------------HHHHHHHHHHHHHHTT--CSBCCHHHHHHHHHHHHHHHTCC---------
T ss_pred --------------------HHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHhCccccccchhHhhhC
Confidence 9999999999999886 45799999999999887776666677666664
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-39 Score=284.87 Aligned_cols=193 Identities=35% Similarity=0.582 Sum_probs=176.8
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+++|+.++++++.++|+|+++++++.+|..|+.++||||||||+|.++..|......+ +....++++.||++|++...
T Consensus 240 ~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~-~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 240 TSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG-EREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp HTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSS-CCHHHHHHHHHHHHHHHCCC
T ss_pred hCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCc-cHHHHHHHHHHHHHhhCcCC
Confidence 46899999999999999999999999999999999999999999999999887655433 34557889999999999988
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
.++|+||||||+|+.||+|++||||||..|+|++|+.++|.+||+.++++.++..++++..||..|+||||+|
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGAD------- 391 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGAD------- 391 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHH-------
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHH-------
Confidence 8899999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCHHHH
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQLI 228 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~~~~ 228 (237)
|.++|++|++.+++++ ...|+.+||..|++.+.|+.+++.+
T Consensus 392 --------------------I~~l~~eA~~~Air~~--~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 392 --------------------IQAMCTEAGLLALRER--RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp --------------------HHHHHHHHHHHHHHTT--CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred --------------------HHHHHHHHHHHHHHcC--CCccCHHHHHHHHHHHhCCCChhhH
Confidence 9999999999999886 4579999999999988876655544
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-38 Score=280.27 Aligned_cols=190 Identities=37% Similarity=0.608 Sum_probs=175.3
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+++|+.++++++.++|+|+++++++.+|..|+.++||||||||+|.++..|......+ .....++++.||++|+++..
T Consensus 239 ~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~-~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 239 TNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG-DREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp HTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGT-THHHHHHHHHHHHHHTTSCS
T ss_pred hCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCC-chHHHHHHHHHHHHhhccCC
Confidence 46899999999999999999999999999999999999999999999999886654332 23456788999999999988
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
.++|+||||||+|+.||+|++||||||..|+|++|+.++|.+||+.++++.++..++++..||..|+||||+|
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGAD------- 390 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQ------- 390 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHH-------
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHH-------
Confidence 8899999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCH
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPP 225 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~ 225 (237)
|.++|.+|++.+++++ ...|+.+||..|++.++|+.++
T Consensus 391 --------------------i~~l~~eA~~~a~r~~--~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 391 --------------------LKAVTVEAGMIALRNG--QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp --------------------HHHHHHHHHHHHHHHT--CSSBCHHHHHHHHHSCSSSCCC
T ss_pred --------------------HHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHhCCCCc
Confidence 9999999999998876 4579999999999999998764
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-38 Score=279.16 Aligned_cols=192 Identities=34% Similarity=0.574 Sum_probs=174.5
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+++|+.++++++.++|+|+++++++.+|..|+.++||||||||+|.++..|...+... +....++++.||++|+++..
T Consensus 239 ~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~-~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA-DREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp HTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSS-TTHHHHHHHHHHHHHHSSSC
T ss_pred hCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCc-chHHHHHHHHHHHHhhcccC
Confidence 46899999999999999999999999999999999999999999999999886655433 34557889999999999988
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
.++|+||||||+|+.||+|++||||||..|+|++|+.++|.+||+.++++.+...++++..+|..|+||||+|
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGAD------- 390 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGAD------- 390 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHH-------
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHH-------
Confidence 8899999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCHHH
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQL 227 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~~~ 227 (237)
|.++|.+|++.+++++ ...|+.+||..|++.+.|+...+.
T Consensus 391 --------------------i~~l~~eA~~~air~~--~~~i~~~d~~~Al~~v~~~~k~e~ 430 (437)
T 4b4t_L 391 --------------------IRNCATEAGFFAIRDD--RDHINPDDLMKAVRKVAEVKKLEG 430 (437)
T ss_dssp --------------------HHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHHHHTCC---
T ss_pred --------------------HHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhccCccc
Confidence 9999999999999876 456999999999999888755443
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3e-40 Score=312.15 Aligned_cols=205 Identities=43% Similarity=0.760 Sum_probs=134.1
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
..+.+|+.+++++++++|+|+++++++.+|..|+..+||||||||+|.++..|+..... ......+++++||.+|+++.
T Consensus 534 e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~-~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD-GGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp TTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSC
T ss_pred HhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC-CchHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999999999999999999999999988654321 12345789999999999998
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhH
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
...+|+||||||+|+.||++++||||||+.|+|++|+.++|.+||+.++++.++..++++..||..|+||||+|
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGad------ 686 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGAD------ 686 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------C------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHH------
Confidence 88899999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----------------------cCCccHHHHHHHHhhcCC
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLE-----------------------AAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~-----------------------~~~v~~~df~~al~~~~p 221 (237)
|.++|++|++.++++... .++|+.+||..|++.++|
T Consensus 687 ---------------------i~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 745 (806)
T 3cf2_A 687 ---------------------LTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745 (806)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-----
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCC
Confidence 888888877777654321 246999999999999999
Q ss_pred CCCHHHHHHHHHHhhC
Q psy5642 222 RTPPQLIKLYENYIKK 237 (237)
Q Consensus 222 ~~~~~~~~~~~~~~~~ 237 (237)
+++.++++.|++|.++
T Consensus 746 Svs~~~l~~y~~~~~~ 761 (806)
T 3cf2_A 746 SVSDNDIRKYEMFAQT 761 (806)
T ss_dssp ----------CCCC--
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999864
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-38 Score=278.46 Aligned_cols=199 Identities=37% Similarity=0.615 Sum_probs=172.1
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+++|+.+++++|.++|+|+++++++.+|..|+.++||||||||+|.++..|...... ......++++.+|++|++...
T Consensus 267 ~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 267 TDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG-GDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp HTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG-GGGHHHHHHHHHHHHHHSSCC
T ss_pred cCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCC-ccHHHHHHHHHHHHHhhccCC
Confidence 4689999999999999999999999999999999999999999999999988765432 234557889999999999988
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
.++|+||||||+|+.||+|++||||||.+|+|++|+.++|.+||+.++++.++..++++..||..|+||||+|
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGAD------- 418 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAE------- 418 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHH-------
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHH-------
Confidence 8899999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCC-HHHHHHHHHH
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTP-PQLIKLYENY 234 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~-~~~~~~~~~~ 234 (237)
|.++|++|++.+++++ ...|+.+||..|++.+.+... ......|.+|
T Consensus 419 --------------------I~~l~~eAa~~Air~~--~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~ 466 (467)
T 4b4t_H 419 --------------------LRSVCTEAGMFAIRAR--RKVATEKDFLKAVDKVISGYKKFSSTSRYMQY 466 (467)
T ss_dssp --------------------HHHHHHHHHHHHHHHT--CSSBCHHHHHHHHHHHHHHHCC----------
T ss_pred --------------------HHHHHHHHHHHHHHcC--CCccCHHHHHHHHHHHhcCcccchhHHHHHhh
Confidence 9999999999998876 457999999999987654321 1233445555
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=274.50 Aligned_cols=192 Identities=38% Similarity=0.563 Sum_probs=174.5
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+++|+.++++++.++|+|+++++++.+|..|+.++||||||||+|.++..|......+ +....++++.||++|+++..
T Consensus 230 ~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~-~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 230 TKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS-DREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp HTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCC-CCHHHHHHHHHHHHHHHSCS
T ss_pred hCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCC-ChHHHHHHHHHHHHhhCCCC
Confidence 46899999999999999999999999999999999999999999999999886654433 34567899999999999988
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEec-CCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVP-LPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~-~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
..+|+||||||+|+.||+|++||||||..|+|| +|+.++|..||+.++++.++..+.++..+|..|+||||+|
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgad------ 382 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAV------ 382 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHH------
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHH------
Confidence 889999999999999999999999999999996 8999999999999999998888999999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhh-cCCCCCHHH
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQL-VKPRTPPQL 227 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~-~~p~~~~~~ 227 (237)
|.++|++|++.+++++ ...|+.+||..|+.. ++++.+.+.
T Consensus 383 ---------------------i~~l~~eA~~~a~r~~--~~~i~~~d~~~A~~~~~~~~~~~~~ 423 (428)
T 4b4t_K 383 ---------------------IAAIMQEAGLRAVRKN--RYVILQSDLEEAYATQVKTDNTVDK 423 (428)
T ss_dssp ---------------------HHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHHSCSCCCSSC
T ss_pred ---------------------HHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHhhCccCCccH
Confidence 9999999999999887 457999999999975 666655443
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.1e-33 Score=264.31 Aligned_cols=189 Identities=38% Similarity=0.572 Sum_probs=170.6
Q ss_pred CCceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 5 GGLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 5 ~~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
..+++|+.|+|+++.++|.|+++++++.+|..|+.++||||||||+|.|++.+.... ....++++++|+.+|+++.
T Consensus 261 elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~----~~~~~riv~~LL~~mdg~~ 336 (806)
T 3cf2_A 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp TTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC----CTTHHHHHHHHHTHHHHCC
T ss_pred HhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC----ChHHHHHHHHHHHHHhccc
Confidence 357899999999999999999999999999999999999999999999999876544 3455789999999999998
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhH
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
.+++|+|||+||+++.||++++|||||+++|+++.|+.++|.+||+.++++.++..++++..+|.+|+||+|+|
T Consensus 337 ~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaD------ 410 (806)
T 3cf2_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGAD------ 410 (806)
T ss_dssp GGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHH------
T ss_pred ccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHH------
Confidence 88899999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc---------------ccCCccHHHHHHHHhhcCCCCC
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL---------------EAAYVSHQDFLTALQLVKPRTP 224 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~---------------~~~~v~~~df~~al~~~~p~~~ 224 (237)
|.++|++|.+.++.+.. ....|+.+||..|++.++|+..
T Consensus 411 ---------------------L~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 411 ---------------------LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCC
T ss_pred ---------------------HHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCccc
Confidence 88888888777765432 1346899999999999998754
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.98 E-value=4.4e-31 Score=227.89 Aligned_cols=198 Identities=31% Similarity=0.535 Sum_probs=174.4
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC-
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP- 85 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~- 85 (237)
+.+|+.++++++.++|.|++++.++.+|..|...+|+||||||+|.++..+.... .....++++.++..++++..
T Consensus 71 ~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 71 NSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE----SEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp SCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC----TTHHHHHHHHHHHHHHCSSSC
T ss_pred CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc----chHHHHHHHHHHHHHhccccc
Confidence 6789999999999999999999999999999999999999999999998776543 34567899999999999764
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
..+++||+|||.|+.+|++++| ||+..++++.|+.++|.+||+.+++..+.. .+.++..||..|+||+|+|
T Consensus 147 ~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgad------ 218 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGAD------ 218 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHH------
T ss_pred CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHH------
Confidence 5689999999999999999999 999999999999999999999999887654 7889999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc------------------------------------------
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL------------------------------------------ 202 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~------------------------------------------ 202 (237)
|.++|++|...++++..
T Consensus 219 ---------------------l~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (322)
T 1xwi_A 219 ---------------------ISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDV 277 (322)
T ss_dssp ---------------------HHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGS
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhcccccc
Confidence 66666666665554311
Q ss_pred -----ccCCccHHHHHHHHhhcCCCCCHHHHHHHHHHhhC
Q psy5642 203 -----EAAYVSHQDFLTALQLVKPRTPPQLIKLYENYIKK 237 (237)
Q Consensus 203 -----~~~~v~~~df~~al~~~~p~~~~~~~~~~~~~~~~ 237 (237)
...+|+.+||..|++.++|++++++++.|++|.++
T Consensus 278 ~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~ 317 (322)
T 1xwi_A 278 PGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTED 317 (322)
T ss_dssp CGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHT
T ss_pred ccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 12479999999999999999999999999999864
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=2.1e-31 Score=227.79 Aligned_cols=203 Identities=43% Similarity=0.765 Sum_probs=172.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+|+.++|+++.++|.|++++.++.+|..|....|+||||||+|.+...+....... .....++++.++..|+++...
T Consensus 74 ~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 74 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG-GGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp TCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCS-SCSCCHHHHHHHHHHHSSCTT
T ss_pred CCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCc-chHHHHHHHHHHHHhhcccCC
Confidence 5789999999999999999999999999999999999999999999987765432211 122246788999999988777
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
.+++||+|||.++.+|++++|+|||+..++++.|+.++|.+||+.+++..+...+.++..++..|+||+|+|
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~d-------- 224 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGAD-------- 224 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHH--------
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHH--------
Confidence 789999999999999999999999999999999999999999999999887777899999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----------------------ccCCccHHHHHHHHhhcCCCC
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL-----------------------EAAYVSHQDFLTALQLVKPRT 223 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~-----------------------~~~~v~~~df~~al~~~~p~~ 223 (237)
|.++|++|...+..+.. ....|+.+||..||+..+|++
T Consensus 225 -------------------l~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 225 -------------------LTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred -------------------HHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 44444444444332211 124799999999999999999
Q ss_pred CHHHHHHHHHHhhC
Q psy5642 224 PPQLIKLYENYIKK 237 (237)
Q Consensus 224 ~~~~~~~~~~~~~~ 237 (237)
+.+++..|++|.++
T Consensus 286 ~~~~~~~~~~~~~~ 299 (301)
T 3cf0_A 286 SDNDIRKYEMFAQT 299 (301)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999863
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=1.9e-30 Score=223.82 Aligned_cols=197 Identities=31% Similarity=0.565 Sum_probs=170.4
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-C
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-P 85 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~ 85 (237)
+.+|+.++++++.++|.|++++.++.+|..|....|+||||||+|.+...+.... .....++.+.++..+++.. .
T Consensus 76 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 76 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE----SEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTS
T ss_pred CCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc----chHHHHHHHHHHHHhcccccc
Confidence 5789999999999999999999999999999999999999999999998775433 2334788899999999874 4
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
..+++||+|||.|+.+|+++++ ||+..++++.|+.++|.+||+.++...+.. .+.++..++..|+||+|+|
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~d------ 223 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD------ 223 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHH------
T ss_pred CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHH------
Confidence 5679999999999999999999 999999999999999999999999887754 7889999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----------------------------------------c
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL-----------------------------------------E 203 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~-----------------------------------------~ 203 (237)
|.++|++|...++++.. .
T Consensus 224 ---------------------i~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
T 3eie_A 224 ---------------------IAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELK 282 (322)
T ss_dssp ---------------------HHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBC
T ss_pred ---------------------HHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccccc
Confidence 77777776666654321 1
Q ss_pred cCCccHHHHHHHHhhcCCCCCHHHHHHHHHHhh
Q psy5642 204 AAYVSHQDFLTALQLVKPRTPPQLIKLYENYIK 236 (237)
Q Consensus 204 ~~~v~~~df~~al~~~~p~~~~~~~~~~~~~~~ 236 (237)
..+|+.+||..|++.++|+++.+++..|++|.+
T Consensus 283 ~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~ 315 (322)
T 3eie_A 283 EPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTR 315 (322)
T ss_dssp CCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 256999999999999999999999999999986
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=5.8e-30 Score=223.64 Aligned_cols=197 Identities=31% Similarity=0.564 Sum_probs=166.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC-
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP- 85 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~- 85 (237)
+.+|+.++++++.++|.|+.++.++.+|..|....|+||||||+|.+...+.... .....++.+.|+..|++...
T Consensus 109 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~----~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 109 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE----SEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp TCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC--
T ss_pred CCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc----chHHHHHHHHHHHHhhccccc
Confidence 5789999999999999999999999999999999999999999999988765432 34567889999999998754
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
..+++||+|||.++.+|++++| ||+..++++.|+.++|.+||+.++...+.. .+.++..||..|+||+|+|
T Consensus 185 ~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~d------ 256 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSD------ 256 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHH------
T ss_pred CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHH------
Confidence 4579999999999999999999 999999999999999999999999887654 6889999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc-----------------------------------------c
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL-----------------------------------------E 203 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~-----------------------------------------~ 203 (237)
|.++|++|...++.+.. .
T Consensus 257 ---------------------l~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (355)
T 2qp9_X 257 ---------------------IAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELK 315 (355)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBC
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccc
Confidence 77777777766665411 1
Q ss_pred cCCccHHHHHHHHhhcCCCCCHHHHHHHHHHhh
Q psy5642 204 AAYVSHQDFLTALQLVKPRTPPQLIKLYENYIK 236 (237)
Q Consensus 204 ~~~v~~~df~~al~~~~p~~~~~~~~~~~~~~~ 236 (237)
..+|+.+||..||+.++|+++++++..|++|.+
T Consensus 316 ~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~ 348 (355)
T 2qp9_X 316 EPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTR 348 (355)
T ss_dssp CCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 246999999999999999999999999999986
No 13
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=2e-29 Score=226.34 Aligned_cols=198 Identities=32% Similarity=0.546 Sum_probs=163.1
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC-
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP- 85 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~- 85 (237)
+.+|+.++++++.++|.|++++.++.+|..+...+|+||||||+|.+++.+.... .....++.+.|+..|++...
T Consensus 193 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 193 NSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE----SEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp SSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC----CGGGHHHHHHHHTTTTCSSCC
T ss_pred CCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc----ccHHHHHHHHHHHHHhCcccC
Confidence 5789999999999999999999999999999999999999999999988765543 34457889999999998764
Q ss_pred CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhH
Q psy5642 86 LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 86 ~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
..+++||+|||.|+.+|++++| ||+..++++.|+.++|..||+.++...+.. .+.++..||..|+||+|+|
T Consensus 269 ~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgad------ 340 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGAD------ 340 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHH------
T ss_pred CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHH------
Confidence 5679999999999999999999 999999999999999999999999877653 6889999999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhc-------------------------------------------
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENN------------------------------------------- 201 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~------------------------------------------- 201 (237)
|.++|++|.+.++++.
T Consensus 341 ---------------------l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (444)
T 2zan_A 341 ---------------------ISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDV 399 (444)
T ss_dssp ---------------------HHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTS
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccC
Confidence 5555555555444321
Q ss_pred ----cccCCccHHHHHHHHhhcCCCCCHHHHHHHHHHhhC
Q psy5642 202 ----LEAAYVSHQDFLTALQLVKPRTPPQLIKLYENYIKK 237 (237)
Q Consensus 202 ----~~~~~v~~~df~~al~~~~p~~~~~~~~~~~~~~~~ 237 (237)
....+|+.+||..||+.++|+++.++++.|++|.++
T Consensus 400 ~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~ 439 (444)
T 2zan_A 400 PGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTED 439 (444)
T ss_dssp CTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSS
T ss_pred chhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 112479999999999999999999999999999863
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=4e-29 Score=211.01 Aligned_cols=191 Identities=43% Similarity=0.663 Sum_probs=156.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+++.++++++.++|.|+.++.++.+|+.+....|+++++||+|.++..+..... ....++++.++.+|++....
T Consensus 69 ~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~----~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 69 GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET----GASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp TCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCST
T ss_pred CCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc----hHHHHHHHHHHHhhhccccc
Confidence 34799999999999999999999999999999889999999999998876543211 11246788999999998777
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcC---CCCCchhhHHHHHHHC--CCCCcccccc
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR---SPLGEDVCVEELVRLT--EGYSGAEQSL 161 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~---~~~~~~~~~~~la~~t--~g~s~~Dl~~ 161 (237)
..++++++||+|+.||++++||||||..|++++|+.++|.+||+.+++. .+...++++..+|..| +||||+|
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgad--- 221 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGAD--- 221 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHH---
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHH---
Confidence 7899999999999999999999999999999999999999999999854 3345789999999975 5999999
Q ss_pred hhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc---------ccCCccHHHHHHHHhhcCCCCCHHHH
Q psy5642 162 SKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL---------EAAYVSHQDFLTALQLVKPRTPPQLI 228 (237)
Q Consensus 162 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~---------~~~~v~~~df~~al~~~~p~~~~~~~ 228 (237)
|.++|++|...++++.. ....|+.+||..|++.++|+++++++
T Consensus 222 ------------------------l~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 222 ------------------------LSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC-----
T ss_pred ------------------------HHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 88888888887776422 23479999999999999999988764
No 15
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.94 E-value=2.4e-26 Score=206.98 Aligned_cols=185 Identities=38% Similarity=0.632 Sum_probs=160.8
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+|+.++++++...|.|.+...++.+|..|...+||||||||+|.+...+.... .+......++++.|+..|+++...
T Consensus 74 ~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~-~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 74 NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL-GGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp TCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGG
T ss_pred CCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc-CcCcHHHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999999999999999988765421 112334467889999999987666
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
.+++||++||.++.+|++++|||||+..|.++.|+..+|.+||+.++++.++..+.++..+|..|+||+|+|
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgad-------- 224 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGAD-------- 224 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHH--------
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHH--------
Confidence 789999999999999999999999999999999999999999999999888778889999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCC
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p 221 (237)
|.++|++|...+..++ ...|+.+||..|+....+
T Consensus 225 -------------------L~~lv~~Aal~A~~~~--~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 225 -------------------LENLVNEAALLAAREG--RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp -------------------HHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHHC-
T ss_pred -------------------HHHHHHHHHHHHHHcC--CCeecHHHHHHHHHHHhc
Confidence 9999999998887665 356999999999998765
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=2.3e-26 Score=208.24 Aligned_cols=186 Identities=38% Similarity=0.592 Sum_probs=166.5
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+|+.++|+.+.+.|.|+....++.+|..|....|++|||||+|.+...+.... .....++.+.|+..|++....
T Consensus 263 ~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~----~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC----CHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc----chHHHHHHHHHHHHhhccccC
Confidence 6799999999999999999999999999999999999999999999998765432 356678999999999988777
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
.+++||+|||.++.+|++++++|||+..|+++.|+.++|.+||+.+++..++..+.++..++..+.||+++|
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~d-------- 410 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGAD-------- 410 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHH--------
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHH--------
Confidence 789999999999999999999999999999999999999999999999888878889999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccc---------------cCCccHHHHHHHHhhcCCCC
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLE---------------AAYVSHQDFLTALQLVKPRT 223 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~---------------~~~v~~~df~~al~~~~p~~ 223 (237)
|.++|++|...+..+... ...|+.+||..|++.++|+.
T Consensus 411 -------------------L~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 411 -------------------LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp -------------------HHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 888888888888765422 24699999999999877543
No 17
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.94 E-value=7.3e-26 Score=197.77 Aligned_cols=197 Identities=34% Similarity=0.592 Sum_probs=168.0
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC-
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP- 85 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~- 85 (237)
+.+|+.++|+++.+.|.|+.++.++.+|..+....|+||||||+|.+...+.... .....++.+.++..+++...
T Consensus 142 ~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~----~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 142 GATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE----HESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----
T ss_pred CCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc----chHHHHHHHHHHHHHhccccc
Confidence 5789999999999999999999999999999999999999999999988764432 34557888999999998653
Q ss_pred -CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchh
Q psy5642 86 -LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSK 163 (237)
Q Consensus 86 -~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~ 163 (237)
..+++||+|||.++.+++++++ ||+..++++.|+.++|.++|+.++...... .+.++..++..++||+++|
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~d----- 290 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGAD----- 290 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHH-----
T ss_pred CCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHH-----
Confidence 3579999999999999999999 999999999999999999999999776543 6788999999999999999
Q ss_pred HHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc----------ccCCccHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy5642 164 HRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL----------EAAYVSHQDFLTALQLVKPRTPPQLIKLYEN 233 (237)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~----------~~~~v~~~df~~al~~~~p~~~~~~~~~~~~ 233 (237)
|..+|+.|...++++-. ...+|+.+||..|++.++|+++.++++.|++
T Consensus 291 ----------------------l~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~ 348 (357)
T 3d8b_A 291 ----------------------MTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYEN 348 (357)
T ss_dssp ----------------------HHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 88888877776665321 2357999999999999999999999999999
Q ss_pred Hhh
Q psy5642 234 YIK 236 (237)
Q Consensus 234 ~~~ 236 (237)
|.+
T Consensus 349 ~~~ 351 (357)
T 3d8b_A 349 WNK 351 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 18
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=8.4e-30 Score=243.22 Aligned_cols=203 Identities=44% Similarity=0.772 Sum_probs=151.8
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+|+.++++++.++|+|+.++.++.+|+.|+...||||||||+|.++..+...... ......++++.|+..|++....
T Consensus 536 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~-~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 536 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD-GGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp TCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSH-HHHHHHHHHHHHHTTCC-----
T ss_pred CCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCC-cchhHHHHHHHHHHHHhccccc
Confidence 467889999999999999999999999999999999999999999999887653221 1235578999999999998877
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
.+++||+|||.++.||++++|||||+..|++++|+.++|.+||+.++++.++..+.++..++..|+|||++|
T Consensus 615 ~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgad-------- 686 (806)
T 1ypw_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGAD-------- 686 (806)
T ss_dssp -CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHH--------
T ss_pred CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHH--------
Confidence 889999999999999999999999999999999999999999999999888878899999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----------------------cCCccHHHHHHHHhhcCCCC
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLE-----------------------AAYVSHQDFLTALQLVKPRT 223 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~-----------------------~~~v~~~df~~al~~~~p~~ 223 (237)
|.++|+.|...++.+... ...|+.+||..|++..+|++
T Consensus 687 -------------------i~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~sv 747 (806)
T 1ypw_A 687 -------------------LTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp -------------------HHHHHHHHHHHHHSCC------------------------CCTTTTTTSSCCCCCC-----
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 666666666666554321 24699999999999999999
Q ss_pred CHHHHHHHHHHhhC
Q psy5642 224 PPQLIKLYENYIKK 237 (237)
Q Consensus 224 ~~~~~~~~~~~~~~ 237 (237)
+.++++.|++|.++
T Consensus 748 s~~~~~~ye~~~~~ 761 (806)
T 1ypw_A 748 SDNDIRKYEMFAQT 761 (806)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999863
No 19
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.94 E-value=1.3e-25 Score=190.71 Aligned_cols=197 Identities=33% Similarity=0.594 Sum_probs=166.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+|+.++|+.+.+.+.|+++..++.+|..+....|+||||||+|.+...+..... ....++.+.++..+++....
T Consensus 79 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~----~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 79 SATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEH----EASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp TCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---------CCSHHHHHHHHHHHHHCC--
T ss_pred CCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcc----hHHHHHHHHHHHHHhccccc
Confidence 57899999999999999999999999999999999999999999999887654321 22356778888888876543
Q ss_pred ---CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccch
Q psy5642 87 ---NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLS 162 (237)
Q Consensus 87 ---~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~ 162 (237)
.+++||++||.++.+++++++ ||+..++++.|+.++|..||+.++...+.. .+.++..++..|.||+++|
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~---- 228 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSD---- 228 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHH----
T ss_pred CCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHH----
Confidence 469999999999999999999 999999999999999999999999876543 5778999999999999999
Q ss_pred hHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc----------ccCCccHHHHHHHHhhcCCCCCHHHHHHHH
Q psy5642 163 KHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL----------EAAYVSHQDFLTALQLVKPRTPPQLIKLYE 232 (237)
Q Consensus 163 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~----------~~~~v~~~df~~al~~~~p~~~~~~~~~~~ 232 (237)
|.++++.|...++++.. ....|+.+||..|++..+|+++++.++.|+
T Consensus 229 -----------------------l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~ 285 (297)
T 3b9p_A 229 -----------------------LTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE 285 (297)
T ss_dssp -----------------------HHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88888877777766531 134799999999999999999999999999
Q ss_pred HHhh
Q psy5642 233 NYIK 236 (237)
Q Consensus 233 ~~~~ 236 (237)
+|.+
T Consensus 286 ~~~~ 289 (297)
T 3b9p_A 286 KWSQ 289 (297)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 9976
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=7.4e-25 Score=182.61 Aligned_cols=185 Identities=40% Similarity=0.644 Sum_probs=163.0
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+++.++++++.+.+.|++.+.++.+|+.|....|++|+|||+|.+...+..... +......+.++.++..+++....
T Consensus 70 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG-GGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp TCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSC-CTTCHHHHHHHHHHHHHHTCCSS
T ss_pred CCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcC-CCchHHHHHHHHHHHHhhCcccC
Confidence 35789999999999999999999999999999989999999999999876644321 12234457889999999988777
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
.+++||+|||.++.+|++++|+|||+..++++.|+.++|.+||+.++++.++..+.++..++..++||+++|
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~d-------- 220 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGAD-------- 220 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHH--------
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHH--------
Confidence 789999999999999999999999999999999999999999999999888778888999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCC
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p 221 (237)
|.+++..|...+..++ ...|+.+||..|++.+..
T Consensus 221 -------------------l~~l~~~a~~~a~~~~--~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 221 -------------------LANLVNEAALFAARGN--KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp -------------------HHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHHTT
T ss_pred -------------------HHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHHhc
Confidence 9999999998888765 457999999999987653
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=192.25 Aligned_cols=198 Identities=34% Similarity=0.577 Sum_probs=160.6
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+.+|+.++|+.+.+.|.|+.+..++.+|..+....|+||||||+|.++..+.... .....++...|+..+++...
T Consensus 172 ~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 172 SNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE----HDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp TTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-
T ss_pred hcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc----chHHHHHHHHHHHHhhcccc
Confidence 35799999999999999999999999999999999999999999999987764432 23457888899999887654
Q ss_pred --CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccch
Q psy5642 86 --LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLS 162 (237)
Q Consensus 86 --~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~ 162 (237)
..+++||+|||.++.+++++++ ||+..++++.|+.++|.+||+.++...... .+.++..++..++||+++|
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~---- 321 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSD---- 321 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHH----
T ss_pred cCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHH----
Confidence 3579999999999999999999 999999999999999999999999876544 6778999999999999999
Q ss_pred hHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc----------ccCCccHHHHHHHHhhcCCCCCHHHHHHHH
Q psy5642 163 KHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL----------EAAYVSHQDFLTALQLVKPRTPPQLIKLYE 232 (237)
Q Consensus 163 ~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~----------~~~~v~~~df~~al~~~~p~~~~~~~~~~~ 232 (237)
|..++..|...++.+-. ....|+.+||..+++..+|+.+.+.++.|+
T Consensus 322 -----------------------l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~ 378 (389)
T 3vfd_A 322 -----------------------LTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYI 378 (389)
T ss_dssp -----------------------HHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88888888877776521 234799999999999999999999999999
Q ss_pred HHhh
Q psy5642 233 NYIK 236 (237)
Q Consensus 233 ~~~~ 236 (237)
+|.+
T Consensus 379 ~~~~ 382 (389)
T 3vfd_A 379 RWNK 382 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9975
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=3.4e-24 Score=180.88 Aligned_cols=184 Identities=43% Similarity=0.747 Sum_probs=164.0
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+++.+.++++.+.+.|+....++.+|..+....|+||||||+|.++..+.+.... ........+..++..+++....
T Consensus 76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 76 NATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG-GDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp TCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCG-GGGHHHHHHHHHHHHHHTTCSS
T ss_pred CCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCC-ccHHHHHHHHHHHHHhhCCCCC
Confidence 578999999999999999999999999999999999999999999998876554322 2334567788888899887777
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
.+++||+|||.++.+|+++++++||+..++++.|+.++|.+||+.++.......+.++..++..+.||+++|
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~-------- 226 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAE-------- 226 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHH--------
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHH--------
Confidence 789999999999999999999999999999999999999999999999888778889999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcC
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
|.+++..|...+..++ ...|+.+||..|++.+.
T Consensus 227 -------------------i~~l~~~a~~~a~~~~--~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 227 -------------------LKAICTEAGMNAIREL--RDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp -------------------HHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHhc--cCcCCHHHHHHHHHHHH
Confidence 9999999999988876 44699999999988654
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=181.46 Aligned_cols=187 Identities=34% Similarity=0.542 Sum_probs=143.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+++.++++++.+.+.|.+...++.+|..+....|+||+|||+|.+...+...............+..++..+++....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 64 QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp TCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred CCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 46899999999999999999999999999999999999999999999877654322111222346778899999987767
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCch--hhHHHHHHHCCCCCcccccchhH
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGED--VCVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~--~~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
.++++|+|||.++.+|++++++|||+..++++.|+.++|.+||+.++...+...+ ..+..++..+.||+++|
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~------ 217 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD------ 217 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHH------
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHH------
Confidence 7899999999999999999999999999999999999999999999987766533 34588999999999999
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCC
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPR 222 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~ 222 (237)
|.++++.|...+..++ ...|+.+||..|++.+.|.
T Consensus 218 ---------------------l~~l~~~a~~~a~~~~--~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 218 ---------------------IANICNEAALHAAREG--HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp ---------------------HHHHHHHHHTC----------CCBCCHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHhccC
Confidence 8888888887776654 3468889999999876553
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.91 E-value=2.8e-24 Score=194.64 Aligned_cols=186 Identities=37% Similarity=0.607 Sum_probs=162.7
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+|+.++++++...+.|...+.++.+|+.+....|+|+||||+|.+...+.... ..........++.++..|++....
T Consensus 89 ~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~-~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 89 RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp TCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST-TTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred CCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc-CCCcHHHHHHHHHHHHHhcccccC
Confidence 4789999999999999999999999999999888999999999999987664321 112234467889999999988777
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
..+++|++||.|+.+|++++|||||+..|+|+.|+..+|.+||+.+++..++..+.++..+|..|+||+|+|
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gad-------- 239 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD-------- 239 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHH--------
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHH--------
Confidence 789999999999999999999999999999999999999999999998887778899999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCC
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPR 222 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~ 222 (237)
|.+++++|...+..++ ...|+.+||..|+....+.
T Consensus 240 -------------------L~~lv~~Aa~~A~~~~--~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 240 -------------------LENLLNEAALLAAREG--RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp -------------------HHHHHHHHHHHHTTTC--CSSCCSHHHHHHHHHHTTC
T ss_pred -------------------HHHHHHHHHHHHHHhC--CCccCHHHHHHHHHHHhcc
Confidence 9999999988886654 3469999999999987654
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.91 E-value=2.8e-23 Score=172.77 Aligned_cols=180 Identities=38% Similarity=0.639 Sum_probs=153.2
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLN 87 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 87 (237)
.+++.+++.++.+.+.+...+.++.+|+.+....|+++++||+|.+...+.... ........+.++.++..|++.....
T Consensus 75 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 75 VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccc-cccchHHHHHHHHHHHHHhCCCCCC
Confidence 678999999999999999999999999999888899999999999986654311 1112344677889999999877767
Q ss_pred CEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHhh
Q psy5642 88 NVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAK 167 (237)
Q Consensus 88 ~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a~ 167 (237)
.++++++||.|+.+|++++|++||+..++++.|+.++|.+||+.+++..++..+.++..+|..++||+++|
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~d--------- 224 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD--------- 224 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHH---------
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHH---------
Confidence 79999999999999999999999999999999999999999999998877778889999999999999999
Q ss_pred hhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 168 KIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
|.+++++|...+..++ ...|+.+||.+|++
T Consensus 225 ------------------l~~~~~~a~~~a~~~~--~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 225 ------------------LENLLNEAALLAAREG--RRKITMKDLEEAAS 254 (254)
T ss_dssp ------------------HHHHHHHHHHHHHHTT--CSSBCHHHHHHHTC
T ss_pred ------------------HHHHHHHHHHHHHHhc--CCCcCHHHHHHHhC
Confidence 9999999988887665 34699999998863
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.89 E-value=3.3e-22 Score=168.58 Aligned_cols=180 Identities=38% Similarity=0.639 Sum_probs=152.8
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLN 87 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 87 (237)
.+++.+++.++...+.+...+.+..+|+.+....|+++++||+|.+...+.... ..........++.++..+++.....
T Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 99 VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccccccc-CCcchHHHHHHHHHHHHHhCCCCCC
Confidence 578999999999999999999999999999988899999999999876554211 1112334677888999999877667
Q ss_pred CEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHhh
Q psy5642 88 NVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAK 167 (237)
Q Consensus 88 ~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a~ 167 (237)
.++++++||.|+.+|++++|++||+..++++.|+.++|.+||+.+++...+..+.++..+|..++||+++|
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~d--------- 248 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD--------- 248 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHH---------
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHH---------
Confidence 79999999999999999999999999999999999999999999998877777889999999999999999
Q ss_pred hhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 168 KIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
|.++++.|...+..++ ...|+.+||.+|++
T Consensus 249 ------------------l~~l~~~a~~~a~~~~--~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 249 ------------------LENLLNEAALLAAREG--RRKITMKDLEEAAS 278 (278)
T ss_dssp ------------------HHHHHHHHHHHHHHTT--CCSBCHHHHHHHTC
T ss_pred ------------------HHHHHHHHHHHHHHhC--CCCcCHHHHHHHhC
Confidence 9999998888877654 34699999998863
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.89 E-value=3.4e-25 Score=185.53 Aligned_cols=191 Identities=36% Similarity=0.557 Sum_probs=154.4
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+|+.++++.+.+.+.|.+...++.+|..+....|+||||||+|.+...+......+.......+++.++..+++....
T Consensus 69 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 69 HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp TCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred CCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 45788999999999999999999999999999999999999999999876533211111111123456777888776543
Q ss_pred -CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHH
Q psy5642 87 -NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 87 -~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
.+++||+|||.++.+|++++++|||+..++++.|+.++|.++|+.+++..+...+.++..++..+.||+|+|
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~d------- 221 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGAD------- 221 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHH-------
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHH-------
Confidence 359999999999999999999999999999999999999999999998887777888999999999999999
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCHH
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQ 226 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~~ 226 (237)
|.++++.|...+..++ ...|+.+||..|++...|+...+
T Consensus 222 --------------------l~~l~~~a~~~a~~~~--~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 222 --------------------LANIINEAALLAGRNN--QKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp --------------------HHHHHHHHHHTTSSSC--CCSCCHHHHHTSCTTCCCCCC--
T ss_pred --------------------HHHHHHHHHHHHHHhc--cCCcCHHHHHHHHHHHhhcchhh
Confidence 8888888887775443 34699999999999999987554
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.82 E-value=1.8e-20 Score=159.33 Aligned_cols=147 Identities=20% Similarity=0.321 Sum_probs=111.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHH----HhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRA----RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a----~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
+.+|+.++++++.+.|+|+++..++.+|..| +..+|+||||||+|.+++.+.+.... ....+.+.+.|++.|++
T Consensus 61 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~--~~~~~~v~~~Ll~~ld~ 138 (293)
T 3t15_A 61 GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY--TVNNQMVNATLMNIADN 138 (293)
T ss_dssp TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----------------CHHHHHHHHHHHHHC
T ss_pred CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccc--cchHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999 56789999999999998855432211 12335677889999874
Q ss_pred CC-----------CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHC
Q psy5642 83 IV-----------PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLT 151 (237)
Q Consensus 83 ~~-----------~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t 151 (237)
.. ...+++||+|||+++.+|++++|+|||+..|+ .|+.++|.+|++.++.. .+.++..++..+
T Consensus 139 ~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~----~~~~~~~l~~~~ 212 (293)
T 3t15_A 139 PTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRT----DNVPAEDVVKIV 212 (293)
T ss_dssp CC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGG----GCCCHHHHHHHH
T ss_pred ccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccC----CCCCHHHHHHHh
Confidence 43 44579999999999999999999999999887 57999999999988864 356788999999
Q ss_pred CCCCcccccc
Q psy5642 152 EGYSGAEQSL 161 (237)
Q Consensus 152 ~g~s~~Dl~~ 161 (237)
+||+++||..
T Consensus 213 ~~~~~~~l~~ 222 (293)
T 3t15_A 213 DNFPGQSIDF 222 (293)
T ss_dssp HHSCSCCHHH
T ss_pred CCCCcccHHH
Confidence 9999999654
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.82 E-value=2.6e-19 Score=170.91 Aligned_cols=187 Identities=38% Similarity=0.582 Sum_probs=163.5
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+++.++|+++.+.+.|+.+..++.+|+.+....|++|||||+|.++.++.... .....++...++..+++....
T Consensus 263 ~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~~~~~Ll~ll~g~~~~ 338 (806)
T 1ypw_A 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp TCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC----SHHHHHHHHHHHHHHHSSCTT
T ss_pred CCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc----chHHHHHHHHHHHHhhhhccc
Confidence 5689999999999999999999999999999999999999999999998765432 355678899999999998877
Q ss_pred CCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHh
Q psy5642 87 NNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRA 166 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a 166 (237)
.++++|++||.++.+|++++++|||+..+.++.|+.++|.+||+.++.+..+..+.++..++..++||+++|
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~d-------- 410 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGAD-------- 410 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHH--------
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHH--------
Confidence 889999999999999999999999999999999999999999999999888878889999999999999999
Q ss_pred hhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc---------------ccCCccHHHHHHHHhhcCCCCC
Q psy5642 167 KKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL---------------EAAYVSHQDFLTALQLVKPRTP 224 (237)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~---------------~~~~v~~~df~~al~~~~p~~~ 224 (237)
+..++.++...+..+.. ....++.+||..++....|+..
T Consensus 411 -------------------l~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~ 464 (806)
T 1ypw_A 411 -------------------LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCC
T ss_pred -------------------HHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhh
Confidence 77777777666554321 1346788999999998887644
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.55 E-value=9.9e-18 Score=150.70 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=98.2
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHH---HhcCCeEEEEccccccccccCCCCCCCCCchHH-------------
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRA---RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQE------------- 70 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a---~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~------------- 70 (237)
+++|+.++++++.++|.|++++ ++.+|..| +..+||||||||+|.+++++.....++......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 168 (456)
T 2c9o_A 90 KVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTK 168 (456)
T ss_dssp TSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEE
T ss_pred CceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccch
Confidence 4899999999999999999998 99999999 778999999999999998886543211111111
Q ss_pred --HHHHHHHHHhc--CCCCCCCEEEEEEeCCCCccchhccCCCCccc--EEEecCCC--HHHHHHHHHHHHcCCCCCchh
Q psy5642 71 --RVLAQMLTEMD--GIVPLNNVTIVAATNRPDRIDKALLRPGRLDR--LIYVPLPD--DLTRAAILKIRLARSPLGEDV 142 (237)
Q Consensus 71 --~~~~~ll~~l~--~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~--~i~~~~P~--~~~R~~il~~~l~~~~~~~~~ 142 (237)
++.+.++..++ +....+.++|++|||.++.+|++++||||||. .++++.|+ .++|.+|++.+. ..
T Consensus 169 ~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~-------~~ 241 (456)
T 2c9o_A 169 QLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT-------LH 241 (456)
T ss_dssp EEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE-------HH
T ss_pred hHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH-------HH
Confidence 22344666665 33333447777999999999999999999998 66777774 578888876544 24
Q ss_pred hHHHHHHHCCCCCcccccchhH
Q psy5642 143 CVEELVRLTEGYSGAEQSLSKH 164 (237)
Q Consensus 143 ~~~~la~~t~g~s~~Dl~~~~~ 164 (237)
+++.++..|+| |+||..++.
T Consensus 242 dl~~~a~~t~g--gadl~~l~~ 261 (456)
T 2c9o_A 242 DLDVANARPQG--GQDILSMMG 261 (456)
T ss_dssp HHHHTC----------------
T ss_pred HHHHHHHhCCC--hhHHHHHHh
Confidence 78999999999 999777664
No 31
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.52 E-value=1.2e-14 Score=100.49 Aligned_cols=82 Identities=27% Similarity=0.397 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy5642 121 DDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALEN 200 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~ 200 (237)
|.++|.+||+.++++.++.+++++..||..|+||||+| |.++|++|...++.+
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGAD---------------------------i~~l~~eA~~~a~~~ 54 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGAD---------------------------INSICQESGMLAVRE 54 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHH---------------------------HHHHHHHHHHGGGTS
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHH---------------------------HHHHHHHHHHHHHHh
Confidence 68899999999999998888999999999999999999 999999999999887
Q ss_pred ccccCCccHHHHHHHHhhcCCCCCHHHHHHHH
Q psy5642 201 NLEAAYVSHQDFLTALQLVKPRTPPQLIKLYE 232 (237)
Q Consensus 201 ~~~~~~v~~~df~~al~~~~p~~~~~~~~~~~ 232 (237)
. ..+|+.+||..|++.++|+++ +.++.|+
T Consensus 55 ~--~~~i~~~df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 55 N--RYIVLAKDFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp C--CSSBCHHHHHHHHHHHCC-----------
T ss_pred c--cCCcCHHHHHHHHHHHccCch-HHHHhcC
Confidence 6 467999999999999999998 7666653
No 32
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.52 E-value=2.1e-14 Score=100.23 Aligned_cols=85 Identities=27% Similarity=0.363 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy5642 121 DDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALEN 200 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~ 200 (237)
|.++|.+||+.++++.++..++++..||..|+||||+| |.++|++|++.++++
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGAD---------------------------l~~l~~eAa~~a~r~ 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAE---------------------------LRSVCTEAGMFAIRA 54 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHH---------------------------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHH---------------------------HHHHHHHHHHHHHHh
Confidence 56799999999999999888999999999999999999 999999999999998
Q ss_pred ccccCCccHHHHHHHHhhcCCCCCH-HHHHHHHHH
Q psy5642 201 NLEAAYVSHQDFLTALQLVKPRTPP-QLIKLYENY 234 (237)
Q Consensus 201 ~~~~~~v~~~df~~al~~~~p~~~~-~~~~~~~~~ 234 (237)
. ...|+.+||..|++.+.|...+ .....|.+|
T Consensus 55 ~--~~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w 87 (88)
T 3vlf_B 55 R--RKVATEKDFLKAVDKVISGYKKFSSTSRYMQY 87 (88)
T ss_dssp S--CSSBCHHHHHHHHHHHTC--------------
T ss_pred c--cccCCHHHHHHHHHHHhcCcccccchhHHhcc
Confidence 7 4569999999999999998754 447778888
No 33
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=99.98 Aligned_cols=78 Identities=31% Similarity=0.457 Sum_probs=72.0
Q ss_pred EecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHH
Q psy5642 116 YVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAAL 195 (237)
Q Consensus 116 ~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~ 195 (237)
+-.+|+.++|.+||+.++++.++..++++..||..|+||||+| |.++|++|++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGAD---------------------------L~~l~~eAa~ 59 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAE---------------------------VKGVCTEAGM 59 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHH---------------------------HHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHH---------------------------HHHHHHHHHH
Confidence 3468999999999999999988888999999999999999999 9999999999
Q ss_pred HHHHhccccCCccHHHHHHHHhhcCCC
Q psy5642 196 SALENNLEAAYVSHQDFLTALQLVKPR 222 (237)
Q Consensus 196 ~~~~~~~~~~~v~~~df~~al~~~~p~ 222 (237)
.++.+. ...|+.+||..|++.++|.
T Consensus 60 ~alr~~--~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 60 YALRER--RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHTT--CSEECHHHHHHHHHHHHCC
T ss_pred HHHHHc--CCCCCHHHHHHHHHHHccC
Confidence 999887 4679999999999998874
No 34
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=96.31 Aligned_cols=75 Identities=33% Similarity=0.512 Sum_probs=69.3
Q ss_pred cCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHH
Q psy5642 118 PLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSA 197 (237)
Q Consensus 118 ~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~ 197 (237)
|+|+.++|.+||+.++++.++..++++..||..|+||||+| |.++|++|.+.+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGAD---------------------------i~~l~~eA~~~a 53 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAE---------------------------VKGVCTEAGMYA 53 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHH---------------------------HHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHH---------------------------HHHHHHHHHHHH
Confidence 68999999999999999988878999999999999999999 999999999999
Q ss_pred HHhccccCCccHHHHHHHHhhcCC
Q psy5642 198 LENNLEAAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 198 ~~~~~~~~~v~~~df~~al~~~~p 221 (237)
+.++ ...|+.+||..|++.+..
T Consensus 54 ~~~~--~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 54 LRER--RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp HHTT--CSEECHHHHHHHHHHHHC
T ss_pred HHhC--CCCCCHHHHHHHHHHHHh
Confidence 9987 457999999999987654
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.46 E-value=4.5e-13 Score=113.65 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=104.4
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
..+++.++++++.+.+.|.....+..+|..+ .++||||||+|.++..+... .....+.+.|+..++. ..
T Consensus 99 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~------~~~~~~~~~Ll~~l~~--~~ 167 (309)
T 3syl_A 99 KGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER------DYGQEAIEILLQVMEN--NR 167 (309)
T ss_dssp SCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---------CCTHHHHHHHHHHHHH--CT
T ss_pred CCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc------cccHHHHHHHHHHHhc--CC
Confidence 4589999999999999999999999999887 46899999999998654331 1225678888888886 33
Q ss_pred CCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHH
Q psy5642 87 NNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRL 150 (237)
Q Consensus 87 ~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~ 150 (237)
.++++|++||.+. .+++++++ ||+.+++|+.|+.+++..|++.++...... .+..+..++..
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~ 235 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAY 235 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5788899998654 35799999 999999999999999999999999866544 44555556554
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.33 E-value=6.5e-12 Score=109.02 Aligned_cols=145 Identities=20% Similarity=0.219 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhc---------CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEe--
Q psy5642 27 ERCVRDVFKRARQV---------SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAAT-- 95 (237)
Q Consensus 27 ~~~l~~~f~~a~~~---------~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt-- 95 (237)
...++..|..+... .|+||||||+|.+. ....+.|+..++... .+++++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~---------------~~~~~~L~~~le~~~--~~~~ii~t~~~ 228 (368)
T 3uk6_A 166 KSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD---------------IESFSFLNRALESDM--APVLIMATNRG 228 (368)
T ss_dssp CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB---------------HHHHHHHHHHTTCTT--CCEEEEEESCS
T ss_pred HHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC---------------hHHHHHHHHHhhCcC--CCeeeeecccc
Confidence 44555566555431 27899999999883 234667777776632 356666664
Q ss_pred ---------CCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhHH
Q psy5642 96 ---------NRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKHR 165 (237)
Q Consensus 96 ---------n~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~~ 165 (237)
|.+..+++++++ ||.. +.|++|+.+++.++++..+...... ++..+..++..+.|.++++
T Consensus 229 ~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~------- 298 (368)
T 3uk6_A 229 ITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRY------- 298 (368)
T ss_dssp EEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHH-------
T ss_pred eeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHH-------
Confidence 357889999999 9976 8999999999999999888765443 5667888999887667788
Q ss_pred hhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcC
Q psy5642 166 AKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 166 a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
+.+++..+...+..++ ...|+.+++.+|+..+.
T Consensus 299 --------------------~~~ll~~a~~~A~~~~--~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 299 --------------------AIQLITAASLVCRKRK--GTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp --------------------HHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHSB
T ss_pred --------------------HHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhc
Confidence 8889999888887665 45799999999998754
No 37
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.30 E-value=4.3e-13 Score=92.32 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc
Q psy5642 123 LTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL 202 (237)
Q Consensus 123 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~ 202 (237)
++|.+||+.++++.++..++++..||..|+||||+| |.++|++|++.++.++
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGAD---------------------------i~~l~~eAa~~ai~~~- 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAV---------------------------IAAIMQEAGLRAVRKN- 52 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHH---------------------------HHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHH---------------------------HHHHHHHHHHHHHHhc-
Confidence 479999999999988778899999999999999999 9999999999999986
Q ss_pred ccCCccHHHHHHHHhhc-CCCCCHHHHHHH
Q psy5642 203 EAAYVSHQDFLTALQLV-KPRTPPQLIKLY 231 (237)
Q Consensus 203 ~~~~v~~~df~~al~~~-~p~~~~~~~~~~ 231 (237)
...|+.+||..|++.+ .|+.+...++.|
T Consensus 53 -~~~i~~~df~~Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 53 -RYVILQSDLEEAYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp -CSEECHHHHHHHHHTTCC-----------
T ss_pred -cCCcCHHHHHHHHHHHHcCcCChHHHHhh
Confidence 4579999999999998 577777666655
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.29 E-value=2.6e-12 Score=117.78 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=111.0
Q ss_pred ceEEEEEecccccc---------cccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHH
Q psy5642 7 LTEVVESIGPELFR---------KYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQML 77 (237)
Q Consensus 7 ~~~~i~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll 77 (237)
+.++..++++.+.. .|+|.....+...|..+....| ||||||+|.+...... ...+.|+
T Consensus 133 ~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-----------~~~~~LL 200 (543)
T 3m6a_A 133 GRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-----------DPSSAML 200 (543)
T ss_dssp TCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCG
T ss_pred CCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-----------CHHHHHH
Confidence 34677787766544 7788888889999998887666 9999999999765421 1345566
Q ss_pred HHhcCCCC-------------CCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHc-----CCCCC
Q psy5642 78 TEMDGIVP-------------LNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA-----RSPLG 139 (237)
Q Consensus 78 ~~l~~~~~-------------~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~-----~~~~~ 139 (237)
..|+.... ..++++|+|||.++.+|++|++ ||+ +|+|+.|+.+++..|++.++. .....
T Consensus 201 ~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~ 277 (543)
T 3m6a_A 201 EVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLK 277 (543)
T ss_dssp GGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCC
T ss_pred HHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66654321 1468999999999999999999 996 799999999999999998762 22221
Q ss_pred ------chhhHHHHHHHCCC-CCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHH
Q psy5642 140 ------EDVCVEELVRLTEG-YSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDF 212 (237)
Q Consensus 140 ------~~~~~~~la~~t~g-~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df 212 (237)
.+..+..++....+ ...++|+.. |.++|..+.............|+.+++
T Consensus 278 ~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~-----------------------i~~~~~~aa~~~~~~~~~~~~It~~~l 334 (543)
T 3m6a_A 278 KSNLQLRDQAILDIIRYYTREAGVRSLERQ-----------------------LAAICRKAAKAIVAEERKRITVTEKNL 334 (543)
T ss_dssp GGGCEECHHHHHHHHHHHCCCSSSHHHHHH-----------------------HHHHHHHHHHHHHTTCCSCCEECTTTT
T ss_pred cccccCCHHHHHHHHHhCChhhchhHHHHH-----------------------HHHHHHHHHHHHHhcCCcceecCHHHH
Confidence 34455565553333 223332111 555666666666655444567999999
Q ss_pred HHHHhhcC
Q psy5642 213 LTALQLVK 220 (237)
Q Consensus 213 ~~al~~~~ 220 (237)
..++...+
T Consensus 335 ~~~Lg~~~ 342 (543)
T 3m6a_A 335 QDFIGKRI 342 (543)
T ss_dssp HHHHCSCC
T ss_pred HHHhCCcc
Confidence 99987544
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.28 E-value=1.3e-11 Score=103.16 Aligned_cols=139 Identities=16% Similarity=0.216 Sum_probs=98.9
Q ss_pred ceEEEEEeccc-ccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 7 LTEVVESIGPE-LFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 7 ~~~~i~v~~s~-l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
+.+|+.+++++ +++...+.....++.+|..+....|++|+|||+|.++..+.... .....++..|...++....
T Consensus 89 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-----~~~~~~l~~L~~~~~~~~~ 163 (272)
T 1d2n_A 89 NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-----RFSNLVLQALLVLLKKAPP 163 (272)
T ss_dssp TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-----BCCHHHHHHHHHHTTCCCS
T ss_pred CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-----hHHHHHHHHHHHHhcCccC
Confidence 46788888765 33333344457889999999888899999999999986654222 2225667777777776543
Q ss_pred -CCCEEEEEEeCCCCccch-hccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCC
Q psy5642 86 -LNNVTIVAATNRPDRIDK-ALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYS 155 (237)
Q Consensus 86 -~~~v~vI~ttn~~~~ld~-al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 155 (237)
..+++||+|||.++.+++ .+++ ||+..|++|.++. |.+|...+.....+ .+.++..++..+.||+
T Consensus 164 ~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 164 QGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKK 230 (272)
T ss_dssp TTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSE
T ss_pred CCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCC
Confidence 346889999999999998 6777 9998888876654 34444433332233 5778999999999985
No 40
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.24 E-value=9.3e-11 Score=99.01 Aligned_cols=182 Identities=16% Similarity=0.197 Sum_probs=120.4
Q ss_pred ceEEEEEecccccc-cccCh-HHHHHHHHHHHH-----HhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHH
Q psy5642 7 LTEVVESIGPELFR-KYVGE-SERCVRDVFKRA-----RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTE 79 (237)
Q Consensus 7 ~~~~i~v~~s~l~~-~~~g~-~~~~l~~~f~~a-----~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~ 79 (237)
+.+++.++|+.+.+ .|+|. ....++.+|..+ ....++||+|||+|.+........ .......+.+.|+..
T Consensus 75 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~---~~~~~~~~~~~Ll~~ 151 (310)
T 1ofh_A 75 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG---ADVSREGVQRDLLPL 151 (310)
T ss_dssp TCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS---SHHHHHHHHHHHHHH
T ss_pred CCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc---cchhHHHHHHHHHHH
Confidence 45789999998876 56664 356677777643 122478999999999987653221 122223456778888
Q ss_pred hcCCC--------CCCCEEEEEE----eCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHH----HH-------cCC
Q psy5642 80 MDGIV--------PLNNVTIVAA----TNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKI----RL-------ARS 136 (237)
Q Consensus 80 l~~~~--------~~~~v~vI~t----tn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~----~l-------~~~ 136 (237)
+++.. ...++++|++ ++.+..+++++++ ||+..|+|+.|+.+++.+|++. ++ ...
T Consensus 152 le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 229 (310)
T 1ofh_A 152 VEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 229 (310)
T ss_dssp HHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHT
T ss_pred hcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 87642 2246788888 5678899999999 9998899999999999999983 21 111
Q ss_pred CC--C-chhhHHHHHHHCC-------CCCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc----
Q psy5642 137 PL--G-EDVCVEELVRLTE-------GYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL---- 202 (237)
Q Consensus 137 ~~--~-~~~~~~~la~~t~-------g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~---- 202 (237)
.. . ++..+..++..+. +..++. +.++++.+......+..
T Consensus 230 ~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~---------------------------l~~~l~~~~~~~~~~~~~~~~ 282 (310)
T 1ofh_A 230 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARR---------------------------LHTVMERLMDKISFSASDMNG 282 (310)
T ss_dssp TCEEEECHHHHHHHHHHHHHHHHHSCCCTTHH---------------------------HHHHHHHHSHHHHHHGGGCTT
T ss_pred CCeeccCHHHHHHHHHHhhhhcccccccCcHH---------------------------HHHHHHHHHHhhhcCCccccC
Confidence 11 1 4455566666552 344555 66666665544332221
Q ss_pred ccCCccHHHHHHHHhhcC
Q psy5642 203 EAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 203 ~~~~v~~~df~~al~~~~ 220 (237)
....|+.+++..+++...
T Consensus 283 ~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 283 QTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CEEEECHHHHHHHTCSSS
T ss_pred CEEEEeeHHHHHHHHhhh
Confidence 123599999999998654
No 41
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.23 E-value=1.3e-10 Score=110.36 Aligned_cols=180 Identities=19% Similarity=0.264 Sum_probs=124.5
Q ss_pred CceEEEEEeccccc--ccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 6 GLTEVVESIGPELF--RKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 6 ~~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
.++.++.++++.+. .+|.|+.+..++.+|..+....++||||||+|.+++.+..... . ....+.+..+
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~------~----~~~~~~L~~~ 310 (758)
T 1r6b_X 241 ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG------Q----VDAANLIKPL 310 (758)
T ss_dssp TTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC------H----HHHHHHHSSC
T ss_pred cCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc------h----HHHHHHHHHH
Confidence 46778888888877 5789999999999999999888999999999999876543211 1 1223344444
Q ss_pred CCCCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC----CCC-chhhHHHHHHHCCC
Q psy5642 84 VPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS----PLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~----~~~-~~~~~~~la~~t~g 153 (237)
...+.+.+|++|+.++ .+|+++.+ ||+ .+.|+.|+.++|.+||+.++..+ ... .+..+..++..+.|
T Consensus 311 l~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~ 387 (758)
T 1r6b_X 311 LSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_dssp SSSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HhCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Confidence 4457788999998653 67899999 998 69999999999999999877542 221 45667777777766
Q ss_pred CCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHh--ccccCCccHHHHHHHHhhcC
Q psy5642 154 YSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALEN--NLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 154 ~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~--~~~~~~v~~~df~~al~~~~ 220 (237)
|..... .+..+..++.+|....... ......|+.+|+..++..+.
T Consensus 388 ~i~~~~----------------------lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 388 YINDRH----------------------LPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HCTTSC----------------------TTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred hccccc----------------------CchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 654430 0001555555554433321 11235689999999988764
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.11 E-value=1.6e-10 Score=103.31 Aligned_cols=169 Identities=11% Similarity=0.156 Sum_probs=112.7
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+++++++..+...+.+.........|.......|.||+|||++.+...+ .....++..++.....
T Consensus 160 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-------------~~q~~l~~~l~~l~~~ 226 (440)
T 2z4s_A 160 DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-------------GVQTELFHTFNELHDS 226 (440)
T ss_dssp SSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-------------HHHHHHHHHHHHHHTT
T ss_pred CCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-------------HHHHHHHHHHHHHHHC
Confidence 567888998877654443333222223433333378999999999986531 1123344443333333
Q ss_pred CCEEEEEEeCCCCc---cchhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccccc
Q psy5642 87 NNVTIVAATNRPDR---IDKALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQS 160 (237)
Q Consensus 87 ~~v~vI~ttn~~~~---ld~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~ 160 (237)
+..+||+|.+.+.. +++.+++ ||. ..+.++.|+.++|..||+..+...+.. ++..+..++..+.| ++++
T Consensus 227 ~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~-- 301 (440)
T 2z4s_A 227 GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRR-- 301 (440)
T ss_dssp TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHH--
T ss_pred CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH--
Confidence 45666666555665 8899999 996 789999999999999999888644332 45557888888754 5566
Q ss_pred chhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCC
Q psy5642 161 LSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p 221 (237)
+.+++..+...+...+ ..|+.+++.++++...+
T Consensus 302 -------------------------l~~~L~~~~~~a~~~~---~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 302 -------------------------LRGAIIKLLVYKETTG---KEVDLKEAILLLKDFIK 334 (440)
T ss_dssp -------------------------HHHHHHHHHHHHHHSS---SCCCHHHHHHHTSTTTC
T ss_pred -------------------------HHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHhh
Confidence 6667776666554443 35999999999988764
No 43
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.08 E-value=1.5e-11 Score=109.47 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=34.9
Q ss_pred ceEEEEEecccccc-cccCh-HHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 7 LTEVVESIGPELFR-KYVGE-SERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 7 ~~~~i~v~~s~l~~-~~~g~-~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
+++|+.++++.+.+ .|+|+ .++.++.+|..|.... ++||++.+..... .....++++.|+.+|+++.
T Consensus 75 ~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~----~~De~d~~~~~~~-------~~~e~rvl~~LL~~~dg~~ 143 (444)
T 1g41_A 75 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV----RQQEIAKNRARAE-------DVAEERILDALLPPAKNQW 143 (444)
T ss_dssp TCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH----HHHHHHSCC------------------------------
T ss_pred CCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc----hhhhhhhhhccch-------hhHHHHHHHHHHHHhhccc
Confidence 57899999999988 59995 8999999999998754 4888887643221 2334789999999999987
Q ss_pred CCCCEEEEEE-eCCCCccchhccCCCCcccEEEecCCCHH-HHHHHH
Q psy5642 85 PLNNVTIVAA-TNRPDRIDKALLRPGRLDRLIYVPLPDDL-TRAAIL 129 (237)
Q Consensus 85 ~~~~v~vI~t-tn~~~~ld~al~r~gRf~~~i~~~~P~~~-~R~~il 129 (237)
....+ +++ ||+++.||++|+||||||+.|+++.|+.. .|.+|+
T Consensus 144 ~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 144 GEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------
T ss_pred ccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 65554 455 99999999999999999999999999987 788876
No 44
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.05 E-value=1.6e-09 Score=94.15 Aligned_cols=180 Identities=12% Similarity=0.188 Sum_probs=121.7
Q ss_pred ceEEEEEeccccccc-ccChH-HHHHHHHHHHH----HhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh
Q psy5642 7 LTEVVESIGPELFRK-YVGES-ERCVRDVFKRA----RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM 80 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~-~~g~~-~~~l~~~f~~a----~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 80 (237)
+.+|+.++|+.+... |+|.. ...++.+|..+ ....|+||||||+|.+...+...... .......+.+.|+..|
T Consensus 76 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~-~~~~~~~~~~~Ll~~l 154 (363)
T 3hws_A 76 DVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSIT-RDVSGEGVQQALLKLI 154 (363)
T ss_dssp TCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHH
T ss_pred CCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccc-cccchHHHHHHHHHHh
Confidence 578999999998754 88876 77888888877 44468999999999998776543321 1222345889999999
Q ss_pred cCCC-------------------CCCCEEEEEEeCCC----------Cc-------------------------------
Q psy5642 81 DGIV-------------------PLNNVTIVAATNRP----------DR------------------------------- 100 (237)
Q Consensus 81 ~~~~-------------------~~~~v~vI~ttn~~----------~~------------------------------- 100 (237)
++.. ...++++|++++.. ..
T Consensus 155 eg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l 234 (363)
T 3hws_A 155 EGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 234 (363)
T ss_dssp HCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHH
T ss_pred cCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHH
Confidence 8421 22345666666642 11
Q ss_pred ----cchhccCCCCcccEEEecCCCHHHHHHHHHH----HH-------cCCCCC---chhhHHHHHHH--CCCCCccccc
Q psy5642 101 ----IDKALLRPGRLDRLIYVPLPDDLTRAAILKI----RL-------ARSPLG---EDVCVEELVRL--TEGYSGAEQS 160 (237)
Q Consensus 101 ----ld~al~r~gRf~~~i~~~~P~~~~R~~il~~----~l-------~~~~~~---~~~~~~~la~~--t~g~s~~Dl~ 160 (237)
+.++|+. ||+.++.+++|+.+++.+|+.. ++ ...... .+..+..|+.. ...+..++
T Consensus 235 ~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~-- 310 (363)
T 3hws_A 235 IKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARG-- 310 (363)
T ss_dssp HHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTT--
T ss_pred HHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchH--
Confidence 6788888 9999999999999999999986 22 111221 45556667653 34556677
Q ss_pred chhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccc-----cCCccHHHHHHHH
Q psy5642 161 LSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLE-----AAYVSHQDFLTAL 216 (237)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~-----~~~v~~~df~~al 216 (237)
|.++++.+....+.+... ...|+.+++.+.+
T Consensus 311 -------------------------L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 311 -------------------------LRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp -------------------------HHHHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred -------------------------HHHHHHHHHHHHHHhcccccCCceeEEcHHHHhCcC
Confidence 777777777776654322 3357777776544
No 45
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.04 E-value=4.3e-09 Score=91.14 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=91.6
Q ss_pred ceEEEEEecccccccc----------------cCh-HHHHHHHHHHHHHhc-CCeEEEEccccccccccCCCCCCCCCch
Q psy5642 7 LTEVVESIGPELFRKY----------------VGE-SERCVRDVFKRARQV-SPSVIFFDELDSLAGERGDGGGGGGSNV 68 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~----------------~g~-~~~~l~~~f~~a~~~-~P~il~iDeid~l~~~~~~~~~~~~~~~ 68 (237)
+.+++.++|....+.+ .|. ....+..++...... .|++|+|||+|.+...+ .
T Consensus 78 ~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~ 147 (387)
T 2v1u_A 78 LVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------G 147 (387)
T ss_dssp CEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------T
T ss_pred CeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------C
Confidence 6889999987644321 122 233455566555443 48899999999986532 0
Q ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEEeCCC---CccchhccCCCCccc-EEEecCCCHHHHHHHHHHHHcC--CCC-Cch
Q psy5642 69 QERVLAQMLTEMDGIVPLNNVTIVAATNRP---DRIDKALLRPGRLDR-LIYVPLPDDLTRAAILKIRLAR--SPL-GED 141 (237)
Q Consensus 69 ~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~---~~ld~al~r~gRf~~-~i~~~~P~~~~R~~il~~~l~~--~~~-~~~ 141 (237)
....+..++..+.......++.+|++||.+ +.+++.+.+ ||.. .++|++|+.+++.++++..+.. .+. -.+
T Consensus 148 ~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~ 225 (387)
T 2v1u_A 148 GQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP 225 (387)
T ss_dssp HHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS
T ss_pred CChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH
Confidence 145677777777654324678999999988 789999999 9975 8999999999999999988753 111 145
Q ss_pred hhHHHHHHHCC
Q psy5642 142 VCVEELVRLTE 152 (237)
Q Consensus 142 ~~~~~la~~t~ 152 (237)
..+..++..+.
T Consensus 226 ~~~~~l~~~~~ 236 (387)
T 2v1u_A 226 DVVPLCAALAA 236 (387)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55677777765
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.01 E-value=8.3e-09 Score=88.44 Aligned_cols=126 Identities=15% Similarity=0.206 Sum_probs=91.1
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC--
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-- 84 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-- 84 (237)
+.+|+.++|+.+. ....+..++.. ...+++|||||+|.+.. .....|+..++...
T Consensus 80 ~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~l~~~~~~ 136 (338)
T 3pfi_A 80 SANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLSP---------------AIEEVLYPAMEDYRLD 136 (338)
T ss_dssp TCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCCH---------------HHHHHHHHHHHTSCC-
T ss_pred CCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcCH---------------HHHHHHHHHHHhccch
Confidence 4578888887653 23344444433 24689999999999842 23455666665432
Q ss_pred --------------CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHH
Q psy5642 85 --------------PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVR 149 (237)
Q Consensus 85 --------------~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~ 149 (237)
...++.+|++||....+++++++ ||+..++|+.|+.+++..+++.++...... .+..+..++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~ 214 (338)
T 3pfi_A 137 IIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAK 214 (338)
T ss_dssp --------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred hhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 01248999999999999999999 999999999999999999999988766543 5566777887
Q ss_pred HCCCCCccc
Q psy5642 150 LTEGYSGAE 158 (237)
Q Consensus 150 ~t~g~s~~D 158 (237)
.+.|. +++
T Consensus 215 ~~~G~-~r~ 222 (338)
T 3pfi_A 215 RSRST-PRI 222 (338)
T ss_dssp TTTTC-HHH
T ss_pred HHCcC-HHH
Confidence 55543 345
No 47
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.96 E-value=6.9e-10 Score=106.72 Aligned_cols=138 Identities=22% Similarity=0.292 Sum_probs=88.5
Q ss_pred CceEEEEEeccccc--ccccChHHHHHHHHHHHHHhc-CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 6 GLTEVVESIGPELF--RKYVGESERCVRDVFKRARQV-SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 6 ~~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~-~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
.+.+++.++++.+. .+|.|+.+..++.+|..+... .|+||||||+|.+.+.+...+. ..+.+.+...+..
T Consensus 225 ~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~-------~~~~~~L~~~l~~ 297 (854)
T 1qvr_A 225 KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA-------VDAGNMLKPALAR 297 (854)
T ss_dssp TTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------HHHHHT
T ss_pred cCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch-------HHHHHHHHHHHhC
Confidence 37899999999987 688999999999999999875 7999999999999866543321 1223334444433
Q ss_pred CCCCCCEEEEEEeCCCC----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC----CCC-chhhHHHHHHHCCC
Q psy5642 83 IVPLNNVTIVAATNRPD----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS----PLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 83 ~~~~~~v~vI~ttn~~~----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~----~~~-~~~~~~~la~~t~g 153 (237)
+.+.+|++|+.++ .+|+++++ ||+. |.|+.|+.+++.+||+.++..+ ... .+..+..++..+.|
T Consensus 298 ----~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 298 ----GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp ----TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred ----CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence 5678999998775 47999999 9986 9999999999999999777533 222 56667778887766
Q ss_pred CCcc
Q psy5642 154 YSGA 157 (237)
Q Consensus 154 ~s~~ 157 (237)
|...
T Consensus 371 ~i~~ 374 (854)
T 1qvr_A 371 YITE 374 (854)
T ss_dssp HCCS
T ss_pred hccc
Confidence 6543
No 48
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.94 E-value=9.2e-09 Score=87.43 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=95.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC--
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-- 84 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-- 84 (237)
+.+++.++|+.+.. ...+...|..+ ...+++|||||+|.+... ....++..++...
T Consensus 63 ~~~~~~~~~~~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~---------------~~~~L~~~l~~~~~~ 120 (324)
T 1hqc_A 63 GVNLRVTSGPAIEK------PGDLAAILANS-LEEGDILFIDEIHRLSRQ---------------AEEHLYPAMEDFVMD 120 (324)
T ss_dssp TCCEEEECTTTCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCCHH---------------HHHHHHHHHHHSEEE
T ss_pred CCCEEEEeccccCC------hHHHHHHHHHh-ccCCCEEEEECCcccccc---------------hHHHHHHHHHhhhhH
Confidence 35677788876532 23333333321 136889999999987421 2334444444321
Q ss_pred --------------CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHH
Q psy5642 85 --------------PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVR 149 (237)
Q Consensus 85 --------------~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~ 149 (237)
...++.+|++||.+..+++++.+ ||+..+.++.|+.+++..+++.++...... .+..+..++.
T Consensus 121 ~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 198 (324)
T 1hqc_A 121 IVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGR 198 (324)
T ss_dssp ECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 01257899999999999999999 999899999999999999999988765544 5667888999
Q ss_pred HCCCCCcccccchhHHhhhhc
Q psy5642 150 LTEGYSGAEQSLSKHRAKKIR 170 (237)
Q Consensus 150 ~t~g~s~~Dl~~~~~~a~~~~ 170 (237)
.+.|+ ++++..+++++...+
T Consensus 199 ~~~G~-~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 199 RSRGT-MRVAKRLFRRVRDFA 218 (324)
T ss_dssp HSCSC-HHHHHHHHHHHTTTS
T ss_pred HccCC-HHHHHHHHHHHHHHH
Confidence 88765 466555555554433
No 49
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.94 E-value=1.5e-08 Score=80.45 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=100.5
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHH------hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRAR------QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM 80 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~------~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 80 (237)
..+++.++++...+ ...+...+.... ...|.+|+|||+|.+... ....++..+
T Consensus 68 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~l~~~l 126 (226)
T 2chg_A 68 RDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---------------AQAALRRTM 126 (226)
T ss_dssp GGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH---------------HHHHHHHHH
T ss_pred ccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH---------------HHHHHHHHH
Confidence 45677787765433 222333333222 246899999999998432 234455555
Q ss_pred cCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccc
Q psy5642 81 DGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQ 159 (237)
Q Consensus 81 ~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl 159 (237)
+.. ..++.+|++||.+..+++++.+ ||. .++++.|+.++..++++.++...+.. .+..+..++..+.| .++.
T Consensus 127 ~~~--~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~- 199 (226)
T 2chg_A 127 EMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRK- 199 (226)
T ss_dssp HHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHH-
T ss_pred Hhc--CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH-
Confidence 542 3467889999999999999999 998 89999999999999999888644433 45567777776644 2222
Q ss_pred cchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 160 SLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 160 ~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
+.++++.+...+ ..|+.+|+.+++.
T Consensus 200 --------------------------l~~~l~~~~~~~-------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 200 --------------------------AINALQGAAAIG-------EVVDADTIYQITA 224 (226)
T ss_dssp --------------------------HHHHHHHHHHTC-------SCBCHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHhcC-------ceecHHHHHHHhc
Confidence 444444443322 3699999998876
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.90 E-value=5.1e-09 Score=84.71 Aligned_cols=154 Identities=14% Similarity=0.045 Sum_probs=98.4
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLN 87 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 87 (237)
.+++.++++++...+.. ++.. ...|.+|+|||+|.+.... .....++..++.....+
T Consensus 81 ~~~~~~~~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~~-------------~~~~~l~~~l~~~~~~~ 137 (242)
T 3bos_A 81 RRSFYIPLGIHASISTA--------LLEG--LEQFDLICIDDVDAVAGHP-------------LWEEAIFDLYNRVAEQK 137 (242)
T ss_dssp CCEEEEEGGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTCH-------------HHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEHHHHHHHHHH--------HHHh--ccCCCEEEEeccccccCCH-------------HHHHHHHHHHHHHHHcC
Confidence 45667777766554321 1111 1357899999999984421 11223333333322223
Q ss_pred CE-EEEEEeCCCC---ccchhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccccc
Q psy5642 88 NV-TIVAATNRPD---RIDKALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQS 160 (237)
Q Consensus 88 ~v-~vI~ttn~~~---~ld~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~ 160 (237)
.+ +|++++..+. .+++.+.+ ||. ..++++.|+.+++.+++..++...+.. .+..+..++..+.| ..++
T Consensus 138 ~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~-- 212 (242)
T 3bos_A 138 RGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRT-- 212 (242)
T ss_dssp SCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHH--
T ss_pred CCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHH--
Confidence 44 5555554454 45688888 886 889999999999999999988755443 55667778887754 4445
Q ss_pred chhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 161 LSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 161 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
+.++++.+...+..++ ..|+.+++.++++
T Consensus 213 -------------------------l~~~l~~~~~~a~~~~---~~It~~~v~~~l~ 241 (242)
T 3bos_A 213 -------------------------LFDVLDRLDKASMVHQ---RKLTIPFVKEMLR 241 (242)
T ss_dssp -------------------------HHHHHHHHHHHHHHHT---CCCCHHHHHHHHT
T ss_pred -------------------------HHHHHHHHHHHHHHhC---CCCcHHHHHHHhh
Confidence 6677776666654333 4599999998875
No 51
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.90 E-value=5.7e-09 Score=93.87 Aligned_cols=123 Identities=24% Similarity=0.265 Sum_probs=86.8
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+.+|+.++++ ++|.|+.+..++.+|..+....|+||||| . . ....+.|+..| .
T Consensus 235 ~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~---~----------~~a~~~L~~~L----~ 288 (468)
T 3pxg_A 235 RDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A---A----------IDASNILKPSL----A 288 (468)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C---------------------CCCT----T
T ss_pred cCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C---c----------hhHHHHHHHhh----c
Confidence 46788899888 88899999999999999999899999999 0 0 01123333333 3
Q ss_pred CCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC----CCC-chhhHHHHHHHCCCCC
Q psy5642 86 LNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS----PLG-EDVCVEELVRLTEGYS 155 (237)
Q Consensus 86 ~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~----~~~-~~~~~~~la~~t~g~s 155 (237)
.+.+.+|++||.++ .+|+++++ ||. .|.|+.|+.+++..||+.++..+ ... .+..+..++..+.+|.
T Consensus 289 ~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 289 RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999987 79999999 998 59999999999999999888763 222 5677888888888777
Q ss_pred cc
Q psy5642 156 GA 157 (237)
Q Consensus 156 ~~ 157 (237)
+.
T Consensus 366 ~~ 367 (468)
T 3pxg_A 366 SD 367 (468)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 52
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.90 E-value=4.4e-09 Score=89.79 Aligned_cols=133 Identities=20% Similarity=0.318 Sum_probs=89.8
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
+.+++++++.++...+.+.........|..... .|++|+|||++.+..++ .....++..++.....
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~-------------~~~~~l~~~l~~~~~~ 130 (324)
T 1l8q_A 65 GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE-------------RTQIEFFHIFNTLYLL 130 (324)
T ss_dssp TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH-------------HHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh-------------HHHHHHHHHHHHHHHC
Confidence 567889999887666555444333334444333 48999999999986431 1122233333322223
Q ss_pred CCEEEEEEeCCCC---ccchhccCCCCcc--cEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 87 NNVTIVAATNRPD---RIDKALLRPGRLD--RLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 87 ~~v~vI~ttn~~~---~ld~al~r~gRf~--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
+..+|+++++.+. .+++++++ ||. ..+++++ +.++|..+|+..+...+.. ++..+..++..+ | ..++
T Consensus 131 ~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~ 203 (324)
T 1l8q_A 131 EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVRE 203 (324)
T ss_dssp TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHH
T ss_pred CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHH
Confidence 4567777777766 68999999 996 6789999 9999999999988755443 566688888888 3 4455
No 53
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.88 E-value=9.8e-10 Score=85.50 Aligned_cols=110 Identities=25% Similarity=0.308 Sum_probs=80.0
Q ss_pred CceEEEEEeccccc--ccccChHHHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 6 GLTEVVESIGPELF--RKYVGESERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 6 ~~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
.+.+++.++++.+. ..+.|.....++.++..+.. ..|+||+|||+|.+...+....... +...+...++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-------~~~~l~~~~~~ 149 (195)
T 1jbk_A 77 KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD-------AGNMLKPALAR 149 (195)
T ss_dssp TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC-------CHHHHHHHHHT
T ss_pred cCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH-------HHHHHHHhhcc
Confidence 46788999998876 56677888889999987754 4688999999999976543322111 12222333332
Q ss_pred CCCCCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHH
Q psy5642 83 IVPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAIL 129 (237)
Q Consensus 83 ~~~~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il 129 (237)
.++.+|++||.+. .+++++++ ||+ .++++.|+.++|.+||
T Consensus 150 ----~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 ----GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ----TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ----CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 4678899998876 78999999 998 6999999999999876
No 54
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.88 E-value=1.4e-08 Score=81.58 Aligned_cols=137 Identities=21% Similarity=0.244 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRAR----QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~----~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.++..+. ...|.+|+|||+|.+.. .....++..++.. ..++.+|++|+.+..++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~---------------~~~~~l~~~l~~~--~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 108 VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKTLEEP--PEHVKFLLATTDPQKLP 170 (250)
T ss_dssp HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH---------------HHHHHHHHHHHSC--CTTEEEEEEESCGGGSC
T ss_pred HHHHHHHHHHhhhchhcCCceEEEEECcccccH---------------HHHHHHHHHHhcC--CCceEEEEEeCChHhCC
Confidence 455666666553 23589999999998722 3456677777663 35788999999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCcccccchhHHhhhhccccCCCCCCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPA 181 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~ 181 (237)
+.+++ |+ ..++++.|+.++..++++.++...... .+..+..++..+.| .++.
T Consensus 171 ~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~----------------------- 223 (250)
T 1njg_A 171 VTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRD----------------------- 223 (250)
T ss_dssp HHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHH-----------------------
T ss_pred HHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHH-----------------------
Confidence 99998 86 579999999999999999988654433 55668889999877 6777
Q ss_pred CchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 182 CKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 182 ~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
+.++++.+.... ...|+.+++.+++.
T Consensus 224 ----~~~~~~~~~~~~------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 224 ----ALSLTDQAIASG------DGQVSTQAVSAMLG 249 (250)
T ss_dssp ----HHHHHHHHHTTT------TSSBCHHHHHHHSC
T ss_pred ----HHHHHHHHHhcc------CceecHHHHHHHhC
Confidence 777776664221 23699999988764
No 55
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.79 E-value=2.3e-07 Score=80.39 Aligned_cols=179 Identities=11% Similarity=0.070 Sum_probs=112.4
Q ss_pred ceEEEEEeccccccc----------------ccC-hHHHHHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCch
Q psy5642 7 LTEVVESIGPELFRK----------------YVG-ESERCVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNV 68 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~----------------~~g-~~~~~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~ 68 (237)
+.+++.++|+...+. ..+ .....+..+...... ..|.+|+|||+|.+ +
T Consensus 73 ~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l--~------------ 138 (389)
T 1fnn_A 73 TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL--A------------ 138 (389)
T ss_dssp CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS--C------------
T ss_pred CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc--c------------
Confidence 467888887664421 011 122333333333333 35899999999998 1
Q ss_pred HHHHHHHHHHHhcCCCC--CCCEEEEEEeCCC---CccchhccCCCCccc-EEEecCCCHHHHHHHHHHHHcC---CCCC
Q psy5642 69 QERVLAQMLTEMDGIVP--LNNVTIVAATNRP---DRIDKALLRPGRLDR-LIYVPLPDDLTRAAILKIRLAR---SPLG 139 (237)
Q Consensus 69 ~~~~~~~ll~~l~~~~~--~~~v~vI~ttn~~---~~ld~al~r~gRf~~-~i~~~~P~~~~R~~il~~~l~~---~~~~ 139 (237)
......|+..+..... ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+.. ...-
T Consensus 139 -~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~ 215 (389)
T 1fnn_A 139 -PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY 215 (389)
T ss_dssp -HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS
T ss_pred -hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC
Confidence 2456677777765432 1478899999988 678888888 8875 8999999999999999987753 1222
Q ss_pred chhhHHHHHHHCCCCC-----cccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHH
Q psy5642 140 EDVCVEELVRLTEGYS-----GAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLT 214 (237)
Q Consensus 140 ~~~~~~~la~~t~g~s-----~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~ 214 (237)
.+..+..++..+.+.+ ++++.. +.++++.+...+..++ ...++.+++..
T Consensus 216 ~~~~~~~l~~~~~~~~~~~~~~G~~r~------------------------~~~~l~~a~~~a~~~~--~~~i~~~~v~~ 269 (389)
T 1fnn_A 216 SEDILQMIADITGAQTPLDTNRGDARL------------------------AIDILYRSAYAAQQNG--RKHIAPEDVRK 269 (389)
T ss_dssp CHHHHHHHHHHHSBSSTTCTTSCCHHH------------------------HHHHHHHHHHHHHHTT--CSSCCHHHHHH
T ss_pred CHHHHHHHHHHHhhcccCCCCCCcHHH------------------------HHHHHHHHHHHHHHhC--CCCcCHHHHHH
Confidence 5677888888885442 234211 4455555554444333 23466667766
Q ss_pred HHhhcCCCCCHHHH
Q psy5642 215 ALQLVKPRTPPQLI 228 (237)
Q Consensus 215 al~~~~p~~~~~~~ 228 (237)
++....+....+.+
T Consensus 270 ~~~~~~~~~~~~~l 283 (389)
T 1fnn_A 270 SSKEVLFGISEEVL 283 (389)
T ss_dssp HHHHHSCCCCHHHH
T ss_pred HHHHHhhhhHHHHH
Confidence 66665554444333
No 56
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.2e-08 Score=87.09 Aligned_cols=111 Identities=12% Similarity=0.077 Sum_probs=85.1
Q ss_pred ceEEEEEecccccccc----------------cChHHHHHHHHHHHH--HhcCCeEEEEccccccccccCCCCCCCCCch
Q psy5642 7 LTEVVESIGPELFRKY----------------VGESERCVRDVFKRA--RQVSPSVIFFDELDSLAGERGDGGGGGGSNV 68 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~----------------~g~~~~~l~~~f~~a--~~~~P~il~iDeid~l~~~~~~~~~~~~~~~ 68 (237)
...+++|+|..+.+.+ .+++...++.+|... ....|+||+|||+|.+. .
T Consensus 80 ~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~------------ 146 (318)
T 3te6_A 80 IFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S------------ 146 (318)
T ss_dssp CEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C------------
T ss_pred ceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c------------
Confidence 5789999998765431 345678899999875 34578999999999997 1
Q ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc----cchhccCCCCcc-cEEEecCCCHHHHHHHHHHHHcC
Q psy5642 69 QERVLAQMLTEMDGIVPLNNVTIVAATNRPDR----IDKALLRPGRLD-RLIYVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 69 ~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~----ld~al~r~gRf~-~~i~~~~P~~~~R~~il~~~l~~ 135 (237)
+.++..++.+... ...+++||+++|..+. +++++++ ||. ..|.|++++.+|..+|++..+..
T Consensus 147 -q~~L~~l~~~~~~--~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 147 -EKILQYFEKWISS--KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -THHHHHHHHHHHC--SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -chHHHHHHhcccc--cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 2466777776543 4468999999999764 5666777 887 68999999999999999988764
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.76 E-value=5.5e-08 Score=92.32 Aligned_cols=121 Identities=24% Similarity=0.259 Sum_probs=82.8
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+++++.+++ .++|.|+.+..++.+|..+....|+||||| . . ....+.|+..|+
T Consensus 235 ~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~---~----------~~~~~~L~~~l~---- 288 (758)
T 3pxi_A 235 RDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------A---A----------IDASNILKPSLA---- 288 (758)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C---------------------CCCTT----
T ss_pred cCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------C---c----------hhHHHHHHHHHh----
Confidence 4677888887 677899999999999999999999999999 0 0 012233333333
Q ss_pred CCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCC----CC-chhhHHHHHHHCCCCC
Q psy5642 86 LNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSP----LG-EDVCVEELVRLTEGYS 155 (237)
Q Consensus 86 ~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~----~~-~~~~~~~la~~t~g~s 155 (237)
.+.+.+|++||..+ .+|++++| ||. .|.|+.|+.+++.+||+.++..+. .. .+..+..++..+.+|.
T Consensus 289 ~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i 365 (758)
T 3pxi_A 289 RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (758)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence 46799999999988 79999999 995 699999999999999998876632 22 4566777777665554
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.75 E-value=1.1e-07 Score=82.48 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=88.3
Q ss_pred ceEEEEEeccccc-cc-----------------ccCh-HHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCc
Q psy5642 7 LTEVVESIGPELF-RK-----------------YVGE-SERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSN 67 (237)
Q Consensus 7 ~~~~i~v~~s~l~-~~-----------------~~g~-~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~ 67 (237)
+.+++.++|.... +. ..|. ....+..++..+....+ +|+|||+|.+.....
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~--------- 150 (384)
T 2qby_B 81 DVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG--------- 150 (384)
T ss_dssp TCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT---------
T ss_pred CceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC---------
Confidence 6788999887643 11 1121 13445555555554444 999999999865320
Q ss_pred hHHHH-HHHHHHHhcCCCCCCCEEEEEEeCCC---CccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcC-C--CCCc
Q psy5642 68 VQERV-LAQMLTEMDGIVPLNNVTIVAATNRP---DRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR-S--PLGE 140 (237)
Q Consensus 68 ~~~~~-~~~ll~~l~~~~~~~~v~vI~ttn~~---~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~-~--~~~~ 140 (237)
... +..++... .++.+|+|||.+ +.+++.+++ ||...++|++|+.++..++++..+.. . ..-.
T Consensus 151 --~~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~ 220 (384)
T 2qby_B 151 --GDIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD 220 (384)
T ss_dssp --SHHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC
T ss_pred --CceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC
Confidence 122 33333332 678999999987 789999999 99889999999999999999988753 1 1124
Q ss_pred hhhHHHHHHHCCCCCcccc
Q psy5642 141 DVCVEELVRLTEGYSGAEQ 159 (237)
Q Consensus 141 ~~~~~~la~~t~g~s~~Dl 159 (237)
+..+..++..+.+ .++|+
T Consensus 221 ~~~~~~i~~~~~~-~~G~~ 238 (384)
T 2qby_B 221 DEILSYIAAISAK-EHGDA 238 (384)
T ss_dssp SHHHHHHHHHHHT-TCCCH
T ss_pred HHHHHHHHHHHHh-ccCCH
Confidence 5567778887753 33553
No 59
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.74 E-value=5.7e-08 Score=86.85 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=103.6
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
+.+|+.+++... +.+.++.+|..+.. ..++||||||+|.+... ....|+..++.
T Consensus 75 ~~~f~~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~---------------~q~~LL~~le~ 132 (447)
T 3pvs_A 75 NADVERISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS---------------QQDAFLPHIED 132 (447)
T ss_dssp TCEEEEEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------CCHHHHHT
T ss_pred CCCeEEEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH---------------HHHHHHHHHhc
Confidence 457777776532 34567777777664 36899999999998432 13446666665
Q ss_pred CCCCCCEEEEEEe--CCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCC-------CC-chhhHHHHHHHCC
Q psy5642 83 IVPLNNVTIVAAT--NRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSP-------LG-EDVCVEELVRLTE 152 (237)
Q Consensus 83 ~~~~~~v~vI~tt--n~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~-------~~-~~~~~~~la~~t~ 152 (237)
+.+++|++| |....+++++++ ||. ++.|+.|+.+++..+++..+.... .. ++..+..++..+.
T Consensus 133 ----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~ 205 (447)
T 3pvs_A 133 ----GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVN 205 (447)
T ss_dssp ----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHC
T ss_pred ----CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCC
Confidence 456666666 334589999999 997 688999999999999999887521 11 4556777777754
Q ss_pred CCCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCC
Q psy5642 153 GYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPR 222 (237)
Q Consensus 153 g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~ 222 (237)
| ..++ +.++++.+...+.........|+.+++.+++....+.
T Consensus 206 G-d~R~---------------------------lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~ 247 (447)
T 3pvs_A 206 G-DARR---------------------------ALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSAR 247 (447)
T ss_dssp S-CHHH---------------------------HHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC
T ss_pred C-CHHH---------------------------HHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhc
Confidence 3 2223 5555665554432111122468889998888876554
No 60
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.72 E-value=2.2e-07 Score=80.24 Aligned_cols=112 Identities=19% Similarity=0.237 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCC---Cccc
Q psy5642 27 ERCVRDVFKRARQVS-PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRP---DRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~-P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~---~~ld 102 (237)
...+..++....... |++|+|||++.+..... ...+..++..++.. ...++.+|++|+.+ ..++
T Consensus 113 ~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----------~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~ 180 (386)
T 2qby_A 113 AELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----------DDILYKLSRINSEV-NKSKISFIGITNDVKFVDLLD 180 (386)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----------STHHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCT
T ss_pred HHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----------CHHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhC
Confidence 344556666555544 99999999999865421 12466777777654 34578899999987 4678
Q ss_pred hhccCCCCcc-cEEEecCCCHHHHHHHHHHHHcCC---CCCchhhHHHHHHHCC
Q psy5642 103 KALLRPGRLD-RLIYVPLPDDLTRAAILKIRLARS---PLGEDVCVEELVRLTE 152 (237)
Q Consensus 103 ~al~r~gRf~-~~i~~~~P~~~~R~~il~~~l~~~---~~~~~~~~~~la~~t~ 152 (237)
+.+.+ ||. ..+++++|+.++..++++..+... ..-.+..+..++..+.
T Consensus 181 ~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 181 PRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp THHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHH
T ss_pred HHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 88888 886 489999999999999999876521 1114555666776665
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.72 E-value=7e-08 Score=91.62 Aligned_cols=132 Identities=13% Similarity=0.193 Sum_probs=91.7
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV- 84 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~- 84 (237)
.+.+|+.++|+.+...+.... ..++.......++||||||+|.+. ..+.+.|+..|+.-.
T Consensus 548 ~~~~~i~i~~s~~~~~~~~~~----~~l~~~~~~~~~~vl~lDEi~~~~---------------~~~~~~Ll~~le~g~~ 608 (758)
T 3pxi_A 548 DEESMIRIDMSEYMEKHSTSG----GQLTEKVRRKPYSVVLLDAIEKAH---------------PDVFNILLQVLEDGRL 608 (758)
T ss_dssp CTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC---------------HHHHHHHHHHHHHSBC
T ss_pred CCcceEEEechhccccccccc----chhhHHHHhCCCeEEEEeCccccC---------------HHHHHHHHHHhccCeE
Confidence 467899999999998887762 223334445567899999998772 245677777776521
Q ss_pred --------CCCCEEEEEEeCCCCc------------cchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCC-------C
Q psy5642 85 --------PLNNVTIVAATNRPDR------------IDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARS-------P 137 (237)
Q Consensus 85 --------~~~~v~vI~ttn~~~~------------ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~-------~ 137 (237)
...++++|+|||.+.. ++|+++. ||+.+|.|++|+.+++..|++.++... .
T Consensus 609 ~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~ 686 (758)
T 3pxi_A 609 TDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQD 686 (758)
T ss_dssp C-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1235899999997654 7899998 999999999999999999999877542 1
Q ss_pred CC---chhhHHHHHHHC--CCCCccc
Q psy5642 138 LG---EDVCVEELVRLT--EGYSGAE 158 (237)
Q Consensus 138 ~~---~~~~~~~la~~t--~g~s~~D 158 (237)
.. ++..+..|+... ..+..++
T Consensus 687 ~~~~~~~~a~~~l~~~~~~~~~~~R~ 712 (758)
T 3pxi_A 687 LSIELTDAAKAKVAEEGVDLEYGARP 712 (758)
T ss_dssp CEEEECHHHHHHHHGGGCCTTTTTTT
T ss_pred CeEEECHHHHHHHHHhCCCCCCCChH
Confidence 11 455666676642 3455666
No 62
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.66 E-value=1.7e-07 Score=79.05 Aligned_cols=133 Identities=18% Similarity=0.234 Sum_probs=88.7
Q ss_pred ceEEEEEecccccccc-----c-------ChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHH
Q psy5642 7 LTEVVESIGPELFRKY-----V-------GESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~-----~-------g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 74 (237)
..+++.++|+.+.... + |.... ..+........+++|||||+|.+.. .+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~~---------------~~~~ 137 (311)
T 4fcw_A 75 EEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAHP---------------DVFN 137 (311)
T ss_dssp GGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSCH---------------HHHH
T ss_pred CcceEEeecccccccccHHHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcCH---------------HHHH
Confidence 4568888888765431 1 11100 1222333344458999999998722 3456
Q ss_pred HHHHHhcCCC---------CCCCEEEEEEeCC--------------------------CCccchhccCCCCcccEEEecC
Q psy5642 75 QMLTEMDGIV---------PLNNVTIVAATNR--------------------------PDRIDKALLRPGRLDRLIYVPL 119 (237)
Q Consensus 75 ~ll~~l~~~~---------~~~~v~vI~ttn~--------------------------~~~ld~al~r~gRf~~~i~~~~ 119 (237)
.|+..|+... .-.++++|+|||. ...+++++++ ||+..+.+++
T Consensus 138 ~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p 215 (311)
T 4fcw_A 138 ILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRP 215 (311)
T ss_dssp HHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCC
T ss_pred HHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCC
Confidence 6666665421 1136789999998 4578899998 9999999999
Q ss_pred CCHHHHHHHHHHHHcCC---------CCC-chhhHHHHHHHCC--CCCccc
Q psy5642 120 PDDLTRAAILKIRLARS---------PLG-EDVCVEELVRLTE--GYSGAE 158 (237)
Q Consensus 120 P~~~~R~~il~~~l~~~---------~~~-~~~~~~~la~~t~--g~s~~D 158 (237)
|+.+++..|++.++... ... .+..+..|+...- .+..++
T Consensus 216 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~ 266 (311)
T 4fcw_A 216 LTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARP 266 (311)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchh
Confidence 99999999999877542 111 4566777777654 566777
No 63
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.62 E-value=2.5e-07 Score=80.55 Aligned_cols=181 Identities=16% Similarity=0.191 Sum_probs=104.6
Q ss_pred ceEEEEEeccccc-ccccChH-HHHHHHHHHHHH----hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh
Q psy5642 7 LTEVVESIGPELF-RKYVGES-ERCVRDVFKRAR----QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM 80 (237)
Q Consensus 7 ~~~~i~v~~s~l~-~~~~g~~-~~~l~~~f~~a~----~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 80 (237)
+.+|+.++|+.+. ..|.|.. ...+..+|..+. ...++||||||+|.+...+...... .......+.+.|+..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~-~~~~~~~~~~~Ll~~l 175 (376)
T 1um8_A 97 DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSIT-RDVSGEGVQQALLKIV 175 (376)
T ss_dssp TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------CHHHHHHHHHHH
T ss_pred CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCcee-cccchHHHHHHHHHHh
Confidence 4689999998876 4566654 556777776543 3368999999999998764332111 0111134678888888
Q ss_pred cCCC-------------------CCCCEEEEEEeCCC-----------------------------------------Cc
Q psy5642 81 DGIV-------------------PLNNVTIVAATNRP-----------------------------------------DR 100 (237)
Q Consensus 81 ~~~~-------------------~~~~v~vI~ttn~~-----------------------------------------~~ 100 (237)
++.. ...++++|+|+|.. ..
T Consensus 176 e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 176 EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 7531 12456788887720 12
Q ss_pred cchhccCCCCcccEEEecCCCHHHHHHHHHH----HHc-------CCC--CC-chhhHHHHHHHCC--CCCcccccchhH
Q psy5642 101 IDKALLRPGRLDRLIYVPLPDDLTRAAILKI----RLA-------RSP--LG-EDVCVEELVRLTE--GYSGAEQSLSKH 164 (237)
Q Consensus 101 ld~al~r~gRf~~~i~~~~P~~~~R~~il~~----~l~-------~~~--~~-~~~~~~~la~~t~--g~s~~Dl~~~~~ 164 (237)
+.++++. ||+.++.|+.++.++...|+.. ++. ... +. ++..+..|+..+- +...+.
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~------ 327 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARG------ 327 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGG------
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHH------
Confidence 4567777 8888899999999999988862 211 111 11 3455566665532 244555
Q ss_pred HhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhcc----ccCCccHHHHHHHHh
Q psy5642 165 RAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNL----EAAYVSHQDFLTALQ 217 (237)
Q Consensus 165 ~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~----~~~~v~~~df~~al~ 217 (237)
+.++++.+....+.+.. ....|+.+++..+++
T Consensus 328 ---------------------L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 328 ---------------------LRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp ---------------------HHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred ---------------------HHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 77777777766655432 234688888876544
No 64
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.60 E-value=4.8e-07 Score=77.24 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=58.3
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC---------CCCCCEEEEEEeCCCC-----ccchhccCC
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI---------VPLNNVTIVAATNRPD-----RIDKALLRP 108 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~v~vI~ttn~~~-----~ld~al~r~ 108 (237)
+||||||+|.+.. ...+.|+..|+.. ....++++|+|+|..+ .+++++++
T Consensus 111 ~vl~iDEi~~~~~---------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~- 174 (331)
T 2r44_A 111 NFILADEVNRSPA---------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD- 174 (331)
T ss_dssp SEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT-
T ss_pred cEEEEEccccCCH---------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh-
Confidence 7999999998622 3345555555532 1233678888888443 38999999
Q ss_pred CCcccEEEecCCCHHHHHHHHHHHHcCC
Q psy5642 109 GRLDRLIYVPLPDDLTRAAILKIRLARS 136 (237)
Q Consensus 109 gRf~~~i~~~~P~~~~R~~il~~~l~~~ 136 (237)
||+..+++++|+.++|.+||+..+...
T Consensus 175 -Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 175 -RFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp -TSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred -heeEEEEcCCCCHHHHHHHHHhccccC
Confidence 999889999999999999999988653
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.60 E-value=2e-07 Score=88.35 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=95.4
Q ss_pred ceEEEEEeccccccc------------ccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHH
Q psy5642 7 LTEVVESIGPELFRK------------YVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 74 (237)
+.+|+.++|+.+..+ |+|..+. ..+........++||||||+|.+. ..+.+
T Consensus 513 ~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~---------------~~~~~ 575 (758)
T 1r6b_X 513 GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH---------------PDVFN 575 (758)
T ss_dssp TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC---------------HHHHH
T ss_pred cCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC---------------HHHHH
Confidence 368899999887653 4443222 123344445567999999999762 24677
Q ss_pred HHHHHhcCCC---------CCCCEEEEEEeCCCC-------------------------ccchhccCCCCcccEEEecCC
Q psy5642 75 QMLTEMDGIV---------PLNNVTIVAATNRPD-------------------------RIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 75 ~ll~~l~~~~---------~~~~v~vI~ttn~~~-------------------------~ld~al~r~gRf~~~i~~~~P 120 (237)
.|++.|+.-. .-.++++|+|||... .+++++++ ||+.+|.|++|
T Consensus 576 ~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l 653 (758)
T 1r6b_X 576 ILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHL 653 (758)
T ss_dssp HHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCC
T ss_pred HHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCC
Confidence 7788777421 014688999999754 67899999 99999999999
Q ss_pred CHHHHHHHHHHHHcCC-------C--CC-chhhHHHHHHHC--CCCCcccccchhHH
Q psy5642 121 DDLTRAAILKIRLARS-------P--LG-EDVCVEELVRLT--EGYSGAEQSLSKHR 165 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~-------~--~~-~~~~~~~la~~t--~g~s~~Dl~~~~~~ 165 (237)
+.+++..|++.++... . +. .+..+..|+... .+|..++|..++++
T Consensus 654 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~ 710 (758)
T 1r6b_X 654 STDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHH
Confidence 9999999999887632 1 11 455566677644 45667774443333
No 66
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.56 E-value=6.3e-07 Score=76.71 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=56.4
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC----CCC-------CCCEEEEEEeCCCC-ccchhccCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG----IVP-------LNNVTIVAATNRPD-RIDKALLRP 108 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~----~~~-------~~~v~vI~ttn~~~-~ld~al~r~ 108 (237)
.+++|||||+|.+.. ...+.|+..++. +.. ..++++|+|||..+ .+++++++
T Consensus 144 ~~~vl~iDEi~~l~~---------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~- 207 (350)
T 1g8p_A 144 NRGYLYIDECNLLED---------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD- 207 (350)
T ss_dssp TTEEEEETTGGGSCH---------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT-
T ss_pred CCCEEEEeChhhCCH---------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh-
Confidence 378999999998733 234455555443 111 12689999999744 89999999
Q ss_pred CCcccEEEecCC-CHHHHHHHHHHHH
Q psy5642 109 GRLDRLIYVPLP-DDLTRAAILKIRL 133 (237)
Q Consensus 109 gRf~~~i~~~~P-~~~~R~~il~~~l 133 (237)
||+..++++.| +.++|.+|++..+
T Consensus 208 -R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 208 -RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp -TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred -hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 99988999999 6788889987743
No 67
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.55 E-value=4.9e-08 Score=75.60 Aligned_cols=103 Identities=23% Similarity=0.349 Sum_probs=75.1
Q ss_pred CceEEEEEeccccc--ccccChHHHHHHHHHHHHHhc-CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcC
Q psy5642 6 GLTEVVESIGPELF--RKYVGESERCVRDVFKRARQV-SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDG 82 (237)
Q Consensus 6 ~~~~~i~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~-~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 82 (237)
.+.+++.++++.+. ..+.+.....++.++..+... .|.+|+|||+|.+...+..... .. .+.+.+...++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~----~~~~~l~~~~~~ 150 (187)
T 2p65_A 77 KGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--AL----DAGNILKPMLAR 150 (187)
T ss_dssp TTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SC----CTHHHHHHHHHT
T ss_pred cCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--ch----HHHHHHHHHHhc
Confidence 46788899888776 446677788899999888775 7899999999999865442111 01 123333344433
Q ss_pred CCCCCCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCC
Q psy5642 83 IVPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPD 121 (237)
Q Consensus 83 ~~~~~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~ 121 (237)
.++++|++||.+. .+++++++ ||+. ++++.|+
T Consensus 151 ----~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 151 ----GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ----TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ----CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 5678999999865 68999999 9995 9999986
No 68
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.54 E-value=7.7e-07 Score=75.67 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=83.0
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhc-----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQV-----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
+.+++++++++.. ...++..+..+... .+.||+|||+|.+.. ....+.|+..++
T Consensus 73 ~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------------~~~~~~L~~~le 131 (324)
T 3u61_B 73 NADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------------AESQRHLRSFME 131 (324)
T ss_dssp TEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------------HHHHHHHHHHHH
T ss_pred CCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------------HHHHHHHHHHHH
Confidence 4688899987632 44555555544333 578999999999851 122345555555
Q ss_pred CCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHc-------CCCCC-ch-hhHHHHHHHCC
Q psy5642 82 GIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA-------RSPLG-ED-VCVEELVRLTE 152 (237)
Q Consensus 82 ~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~-------~~~~~-~~-~~~~~la~~t~ 152 (237)
.. ..++.+|+|||.+..+++++++ ||. .++|+.|+.++|.+|++.++. ..... ++ ..+..++..+.
T Consensus 132 ~~--~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (324)
T 3u61_B 132 AY--SSNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNF 206 (324)
T ss_dssp HH--GGGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTC
T ss_pred hC--CCCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCC
Confidence 42 2467889999999999999999 996 699999999998777665432 22222 34 66777777654
Q ss_pred C
Q psy5642 153 G 153 (237)
Q Consensus 153 g 153 (237)
|
T Consensus 207 g 207 (324)
T 3u61_B 207 P 207 (324)
T ss_dssp S
T ss_pred C
Confidence 3
No 69
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=1.3e-06 Score=74.76 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=72.0
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
.+.||+|||+|.+... ..+.|+..++... .+..+|.+||++..+++++++ |+. .+.+++|
T Consensus 133 ~~~vliiDE~~~l~~~---------------~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~ 192 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD---------------AQSALRRTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKAL 192 (353)
T ss_dssp SCEEEEETTGGGSCHH---------------HHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCC
T ss_pred CceEEEEECCCccCHH---------------HHHHHHHHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCC
Confidence 4569999999998432 2355666666532 356677788999999999999 997 7999999
Q ss_pred CHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 121 DDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+.++...+++..+...+.. ++..+..++..+.|
T Consensus 193 ~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 193 DASNAIDRLRFISEQENVKCDDGVLERILDISAG 226 (353)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 9999999999988665443 56678888888765
No 70
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=2.7e-07 Score=83.90 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=79.0
Q ss_pred ceEEEEEecccccccccChHHH-------HHHHHHHHH-----HhcCCeEEEEccccccccccCCCCCCCCCchHHHHHH
Q psy5642 7 LTEVVESIGPELFRKYVGESER-------CVRDVFKRA-----RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~-------~l~~~f~~a-----~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 74 (237)
+.++++++|+++.+.+..+... .+..+|..+ ....++||+|||+|.+.... ...+.
T Consensus 102 ~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~------------~~~l~ 169 (516)
T 1sxj_A 102 GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD------------RGGVG 169 (516)
T ss_dssp TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS------------TTHHH
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh------------HHHHH
Confidence 5789999999876643221110 022333333 22468999999999996532 11245
Q ss_pred HHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCC
Q psy5642 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTE 152 (237)
Q Consensus 75 ~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 152 (237)
.++..++. ...++++|+++.....+++ ++ |+...+.|+.|+.+++.++|...+...+.. .+..+..++..+.
T Consensus 170 ~L~~~l~~--~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~ 242 (516)
T 1sxj_A 170 QLAQFCRK--TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTR 242 (516)
T ss_dssp HHHHHHHH--CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTT
T ss_pred HHHHHHHh--cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 55555554 2234555555444445544 43 455689999999999999998876543332 4556888888764
No 71
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.49 E-value=5.8e-07 Score=75.73 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=85.1
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHH--hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRAR--QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV 84 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~--~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 84 (237)
+.+++.+++++..+. ......+........ ...+.+|+|||+|.+.. ...+.|+..++..
T Consensus 68 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~~- 129 (319)
T 2chq_A 68 RDNFIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEMY- 129 (319)
T ss_dssp HHHCEEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------HHHHTTGGGTSSS-
T ss_pred cCCeEEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHHhc-
Confidence 345777888765331 112222222221111 13478999999999833 2345566666652
Q ss_pred CCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 85 PLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 85 ~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
..++.+|++||.+..+++++++ |+. .+.+++|+.+++..++...+...+.. ++..+..++..+.|
T Consensus 130 -~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 130 -SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp -SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred -CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3578899999999999999999 986 79999999999999999988766554 55667777765543
No 72
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.3e-06 Score=73.61 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=86.1
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHH-------hcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHh
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRAR-------QVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEM 80 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~-------~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 80 (237)
.+++.+++++..+ ...++.++.... ...+.+|+|||+|.+... ..+.|+..+
T Consensus 73 ~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~---------------~~~~L~~~l 131 (323)
T 1sxj_B 73 DGVLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG---------------AQQALRRTM 131 (323)
T ss_dssp HHEEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH---------------HHHTTHHHH
T ss_pred CCEEEecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH---------------HHHHHHHHH
Confidence 4577777765322 445566666554 224889999999998431 234556666
Q ss_pred cCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 81 DGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 81 ~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+. ...++.+|++|+.+..+++.+++ |+. .+.++.|+.++..++++..+...+.. ++..+..++..+.|
T Consensus 132 e~--~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 200 (323)
T 1sxj_B 132 EL--YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 200 (323)
T ss_dssp HH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred hc--cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 55 23567888899999999999999 886 79999999999999999887654433 45667778887755
No 73
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.46 E-value=7.9e-07 Score=76.70 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=82.3
Q ss_pred HHHHHHHHHHh----cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchh
Q psy5642 29 CVRDVFKRARQ----VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKA 104 (237)
Q Consensus 29 ~l~~~f~~a~~----~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~a 104 (237)
.++.+++.+.. ..+.||+|||+|.+.. ...+.|+..++.. ..++++|++|+.+..+++.
T Consensus 103 ~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 103 DTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKTLEEP--PEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CHHHHHHHTTSCCSSSSSEEEEEECGGGSCH---------------HHHHHHHHHHHSC--CSSEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHhhccccCCeEEEEEECcchhcH---------------HHHHHHHHHHhcC--CCceEEEEEeCChHhCcHH
Confidence 35566666553 2478999999998832 2356777777763 3578899999999999999
Q ss_pred ccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 105 LLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 105 l~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
+++ |+ ..+.++.|+.++...+++..+...+.. .+..+..++..+.| .+++
T Consensus 166 l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~ 216 (373)
T 1jr3_A 166 ILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRD 216 (373)
T ss_dssp HHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHH
T ss_pred HHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHH
Confidence 998 87 679999999999999999888655443 45567788888866 4445
No 74
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.39 E-value=1.3e-06 Score=78.12 Aligned_cols=129 Identities=21% Similarity=0.246 Sum_probs=95.2
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEE---------eC---CCCccchhccCCC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAA---------TN---RPDRIDKALLRPG 109 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t---------tn---~~~~ld~al~r~g 109 (237)
|.|++|||+|.+. ....+.|+..|+... .++++++| ++ .+..+++.+++
T Consensus 296 ~~VliIDEa~~l~---------------~~a~~aLlk~lEe~~--~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s-- 356 (456)
T 2c9o_A 296 PGVLFVDEVHMLD---------------IECFTYLHRALESSI--APIVIFASNRGNCVIRGTEDITSPHGIPLDLLD-- 356 (456)
T ss_dssp ECEEEEESGGGCB---------------HHHHHHHHHHTTSTT--CCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--
T ss_pred ceEEEEechhhcC---------------HHHHHHHHHHhhccC--CCEEEEecCCccccccccccccccccCChhHHh--
Confidence 5699999999982 346788888888743 34655566 33 27889999999
Q ss_pred CcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHC-CCCCcccccchhHHhhhhccccCCCCCCCCCchhHH
Q psy5642 110 RLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLT-EGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIV 187 (237)
Q Consensus 110 Rf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t-~g~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 187 (237)
||.. +.+++|+.++..++|+..+...... .+..+..++..+ .| +++. ..
T Consensus 357 R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~---------------------------a~ 407 (456)
T 2c9o_A 357 RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRY---------------------------SV 407 (456)
T ss_dssp TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHH---------------------------HH
T ss_pred hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHH---------------------------HH
Confidence 9987 6999999999999999877533332 455566677766 44 5555 56
Q ss_pred HHHHHHHHHHHHhccccCCccHHHHHHHHhhcC
Q psy5642 188 AVCDEAALSALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
.+++.|...+..++ ...|+.+|+..|+..+-
T Consensus 408 ~ll~~a~~~A~~~~--~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 408 QLLTPANLLAKING--KDSIEKEHVEEISELFY 438 (456)
T ss_dssp HTHHHHHHHHHHTT--CSSBCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcC--CCccCHHHHHHHHHHhc
Confidence 66777766666555 34699999999988764
No 75
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=3.5e-06 Score=71.14 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=72.9
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
.+.+|+|||+|.+.. ...+.|+..++.. ..++.+|++||.+..+++++++ |+. .+.+++|
T Consensus 110 ~~~vliiDe~~~l~~---------------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l 169 (327)
T 1iqp_A 110 SFKIIFLDEADALTQ---------------DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPL 169 (327)
T ss_dssp SCEEEEEETGGGSCH---------------HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCC
T ss_pred CCeEEEEeCCCcCCH---------------HHHHHHHHHHHhc--CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCC
Confidence 478999999999832 2345566666652 3467888899999999999999 987 7999999
Q ss_pred CHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 121 DDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+.++...+++..+...+.. ++..+..++..+.|
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 170 RDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 203 (327)
T ss_dssp CHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC
Confidence 9999999999988766543 55667778887754
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.35 E-value=1.9e-06 Score=82.84 Aligned_cols=134 Identities=21% Similarity=0.258 Sum_probs=90.0
Q ss_pred CceEEEEEeccccccc------------ccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHH
Q psy5642 6 GLTEVVESIGPELFRK------------YVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVL 73 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 73 (237)
.+.+|+.++|+.+... |+|... ...+........+++|||||+|.+- ..+.
T Consensus 615 ~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~---------------~~~~ 677 (854)
T 1qvr_A 615 TEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH---------------PDVF 677 (854)
T ss_dssp SGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC---------------HHHH
T ss_pred CCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC---------------HHHH
Confidence 3578999999877654 223222 1223334444556899999998762 3567
Q ss_pred HHHHHHhcCCC---------CCCCEEEEEEeCCC--------------------------CccchhccCCCCcccEEEec
Q psy5642 74 AQMLTEMDGIV---------PLNNVTIVAATNRP--------------------------DRIDKALLRPGRLDRLIYVP 118 (237)
Q Consensus 74 ~~ll~~l~~~~---------~~~~v~vI~ttn~~--------------------------~~ld~al~r~gRf~~~i~~~ 118 (237)
+.|+..|+.-. .-.+++||+|||.. ..+.|+|+. ||+.++.+.
T Consensus 678 ~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~ 755 (854)
T 1qvr_A 678 NILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFR 755 (854)
T ss_dssp HHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCC
T ss_pred HHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCC
Confidence 88888887532 11368899999972 245677777 999999999
Q ss_pred CCCHHHHHHHHHHHHcCC---------CCC-chhhHHHHHHHCC--CCCccc
Q psy5642 119 LPDDLTRAAILKIRLARS---------PLG-EDVCVEELVRLTE--GYSGAE 158 (237)
Q Consensus 119 ~P~~~~R~~il~~~l~~~---------~~~-~~~~~~~la~~t~--g~s~~D 158 (237)
+|+.++...|++.++... .+. ++..+..|+..+- .+..++
T Consensus 756 pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~ 807 (854)
T 1qvr_A 756 PLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARP 807 (854)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHH
Confidence 999999999999887521 111 4566777777654 567788
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.32 E-value=4e-06 Score=77.48 Aligned_cols=160 Identities=15% Similarity=0.152 Sum_probs=98.8
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC-----------CCCCEEEEEEeCCCC-----------
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV-----------PLNNVTIVAATNRPD----------- 99 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~----------- 99 (237)
.+||||||+|.+.. ...+.|+..|++-. ...++.||||||.+.
T Consensus 392 ~gil~IDEid~l~~---------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ 456 (595)
T 3f9v_A 392 GGIAVIDEIDKMRD---------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSD 456 (595)
T ss_dssp SSEECCTTTTCCCS---------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCT
T ss_pred CCcEEeehhhhCCH---------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchh
Confidence 58999999998732 23456666665422 123588999999887
Q ss_pred --ccchhccCCCCcc-cEEEecCCCHHHHHHHHHHHHcCCCCC------chhhHHHHH---HH--CCCCCcccccchhHH
Q psy5642 100 --RIDKALLRPGRLD-RLIYVPLPDDLTRAAILKIRLARSPLG------EDVCVEELV---RL--TEGYSGAEQSLSKHR 165 (237)
Q Consensus 100 --~ld~al~r~gRf~-~~i~~~~P~~~~R~~il~~~l~~~~~~------~~~~~~~la---~~--t~g~s~~Dl~~~~~~ 165 (237)
.+++++++ ||| ..+..+.|+.+ ...|.+..+...... +..++..+. .. ...++......+...
T Consensus 457 ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~ 533 (595)
T 3f9v_A 457 NINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDF 533 (595)
T ss_dssp TTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHH
T ss_pred ccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 89999999 998 45566778888 888888888654321 122222222 11 123444334444444
Q ss_pred hhhhccccCCCC--CCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCC
Q psy5642 166 AKKIRPRRESNP--GPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKP 221 (237)
Q Consensus 166 a~~~~~~~~~~~--~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p 221 (237)
...++.....+. ....+...+.++++.|...+..+. ...|+.+|+..|++.++.
T Consensus 534 y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~--~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 534 FVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL--KAEVTREDAERAINIMRL 589 (595)
T ss_dssp HTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS--SCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC--cCCCCHHHHHHHHHHHHH
Confidence 333222221111 234445557788887777776655 346999999999876543
No 78
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.30 E-value=1.2e-05 Score=68.86 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=56.1
Q ss_pred CEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCccc
Q psy5642 88 NVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSGAE 158 (237)
Q Consensus 88 ~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~D 158 (237)
.+.++++|+.+..+++.+++ ||...+.+++|+.++..++++......... .+..+..+|.++.|. +++
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~ 218 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRI 218 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHH
Confidence 46778899999999999999 999889999999999999999887654443 456678889888764 355
No 79
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.26 E-value=2.5e-05 Score=69.48 Aligned_cols=172 Identities=17% Similarity=0.220 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC--------CCCCEEEEEEe---
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV--------PLNNVTIVAAT--- 95 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vI~tt--- 95 (237)
....+.+...|..+ .||++||+|.++...++. +.+....-+...||..|++.. ..++|++|+|.
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~~~---~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~ 312 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGEYS---GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ 312 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSSCS---SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCS
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccCCC---CCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccc
Confidence 34455555555332 699999999998764321 112222346678999998732 34679999997
Q ss_pred -CCCCccchhccCCCCcccEEEecCCCHHHHHHHHH---H--------HHcCCCCC---chhhHHHHHHH-------CCC
Q psy5642 96 -NRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILK---I--------RLARSPLG---EDVCVEELVRL-------TEG 153 (237)
Q Consensus 96 -n~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~---~--------~l~~~~~~---~~~~~~~la~~-------t~g 153 (237)
+.|.++-|.|+. ||..+|.|+..+.++..+|+. . .+...+.. ++..+..++.. |+.
T Consensus 313 ~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~ 390 (444)
T 1g41_A 313 VARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTEN 390 (444)
T ss_dssp SCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCC
T ss_pred cCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCcc
Confidence 355666688998 999999999999999999993 1 22212221 45566666653 444
Q ss_pred CCcccccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcCCCCCHHHHHHH
Q psy5642 154 YSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQLIKLY 231 (237)
Q Consensus 154 ~s~~Dl~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~p~~~~~~~~~~ 231 (237)
...+-|+.+ |..+++++.............|+.+++...+. |....+++.+|
T Consensus 391 ~GaR~L~~~-----------------------ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~---~~~~~~dl~~~ 442 (444)
T 1g41_A 391 IGARRLHTV-----------------------MERLMDKISFSASDMNGQTVNIDAAYVADALG---EVVENEDLSRF 442 (444)
T ss_dssp CGGGHHHHH-----------------------HHHHHHHHHHHGGGCTTCEEEECHHHHHHHHT---TTTTCHHHHHH
T ss_pred CCchHHHHH-----------------------HHHHHHHHHhhccccCCCeEEEeHHHHHHhcC---ccccCCChhcc
Confidence 444442221 33333333333332222345689998887664 44455555544
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.13 E-value=5.9e-06 Score=74.74 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=52.5
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC--------CCCCEEEEEEeCCCCc---cchhccCCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV--------PLNNVTIVAATNRPDR---IDKALLRPG 109 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vI~ttn~~~~---ld~al~r~g 109 (237)
.|+||||||++.+. ..+.+.|+..|+.-. ..+..++|++||.+.. ..+++++
T Consensus 109 ~~~IL~IDEI~r~~---------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld-- 171 (500)
T 3nbx_X 109 EAEIVFLDEIWKAG---------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD-- 171 (500)
T ss_dssp GCSEEEEESGGGCC---------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--
T ss_pred cceeeeHHhHhhhc---------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--
Confidence 47899999997541 345677777775321 1122346777775322 3459999
Q ss_pred CcccEEEecCCCH-HHHHHHHHHHH
Q psy5642 110 RLDRLIYVPLPDD-LTRAAILKIRL 133 (237)
Q Consensus 110 Rf~~~i~~~~P~~-~~R~~il~~~l 133 (237)
||...+++++|+. +++..|++...
T Consensus 172 RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 172 RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 9999999999987 78889988654
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.12 E-value=1.8e-05 Score=67.74 Aligned_cols=104 Identities=19% Similarity=0.313 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
...++.+++.+... .+.|++|||+|.+.. ...+.|+..|++ ...++++|.+|+.++.++
T Consensus 90 i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~---------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 90 VDAVREVTEKLNEHARLGGAKVVWVTDAALLTD---------------AAANALLKTLEE--PPAETWFFLATREPERLL 152 (334)
T ss_dssp HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH---------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHhhccccCCcEEEEECchhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCc
Confidence 45677888777642 367999999999832 235778888887 445788999999999999
Q ss_pred hhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCC
Q psy5642 103 KALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGY 154 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 154 (237)
+.+++ |+. .+.|+.|+.++..++++... .. .+..+..++..+.|-
T Consensus 153 ~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~ 197 (334)
T 1a5t_A 153 ATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGS 197 (334)
T ss_dssp HHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTC
T ss_pred HHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCC
Confidence 99999 885 69999999999999998775 22 455667777777653
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.99 E-value=7.1e-05 Score=65.10 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=69.2
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC-C--CCEEEEEEeCCCC---ccc---hhccCCCC
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP-L--NNVTIVAATNRPD---RID---KALLRPGR 110 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~--~~v~vI~ttn~~~---~ld---~al~r~gR 110 (237)
..|.+|+|||+|.+...... + ...+..++..+..... . .++.+|++|+.++ .++ +.+.+ +
T Consensus 137 ~~~~llvlDe~~~l~~~~~~------~---~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~ 205 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRI------A---AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--Q 205 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTS------C---HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--T
T ss_pred CCeEEEEEeCHHHHhhccCc------c---hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--h
Confidence 46899999999998643110 0 2345555555554321 2 5788999988765 344 66777 7
Q ss_pred cccEEEecCCCHHHHHHHHHHHHcCC---CCCchhhHHHHHHHCC
Q psy5642 111 LDRLIYVPLPDDLTRAAILKIRLARS---PLGEDVCVEELVRLTE 152 (237)
Q Consensus 111 f~~~i~~~~P~~~~R~~il~~~l~~~---~~~~~~~~~~la~~t~ 152 (237)
|...+.+++++.++..+++...+... ....+..+..++..+.
T Consensus 206 ~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 206 IGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred cCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 76669999999999999998766421 1124566777888887
No 83
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=1.7e-05 Score=67.99 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=72.5
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
.|.||+|||++.+.. ...+.++..|+... .+..+|.+|+.+..+.+.+++ |+ ..+.|++|
T Consensus 134 ~~~vlilDE~~~L~~---------------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~ 193 (354)
T 1sxj_E 134 RYKCVIINEANSLTK---------------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAP 193 (354)
T ss_dssp CCEEEEEECTTSSCH---------------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCC
T ss_pred CCeEEEEeCccccCH---------------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCc
Confidence 577999999998521 23455666666542 357888999999999999999 98 67999999
Q ss_pred CHHHHHHHHHHHHcCCCCC-c-hhhHHHHHHHCCC
Q psy5642 121 DDLTRAAILKIRLARSPLG-E-DVCVEELVRLTEG 153 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~~-~-~~~~~~la~~t~g 153 (237)
+.++...+++..+...+.. + +..+..++..+.|
T Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G 228 (354)
T 1sxj_E 194 SDSEISTILSDVVTNERIQLETKDILKRIAQASNG 228 (354)
T ss_dssp CHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC
Confidence 9999999999888655443 4 5677888888755
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=0.00022 Score=60.42 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=75.7
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 83 (237)
..+++++++.- ..+...++.+.+.+... ...|++|||+|.+.. ...+.|+..|++
T Consensus 50 ~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~---------------~a~naLLk~LEe- 108 (305)
T 2gno_A 50 SDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ---------------QAANAFLKALEE- 108 (305)
T ss_dssp TTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH---------------HHHHHTHHHHHS-
T ss_pred CCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH---------------HHHHHHHHHHhC-
Confidence 35666666421 12355678888888643 235999999999832 236789999987
Q ss_pred CCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCCCHHHHHHHHHHHH
Q psy5642 84 VPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRL 133 (237)
Q Consensus 84 ~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l 133 (237)
...++++|.+|++++.+.+++++ | .+.|++|+.++...+++..+
T Consensus 109 -p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 109 -PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred -CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 44578888888999999999999 8 89999999999999998876
No 85
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.49 E-value=0.0004 Score=64.18 Aligned_cols=132 Identities=24% Similarity=0.353 Sum_probs=82.1
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC----------------C---CCCEEEEEEeCCC--C
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV----------------P---LNNVTIVAATNRP--D 99 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~---~~~v~vI~ttn~~--~ 99 (237)
.+.+|||||++.+-+ .+...|+..|+.-. . ..++.||++||.. +
T Consensus 201 ~~gvL~LDEi~~l~~---------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL---------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp TTSEEEETTGGGSCH---------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred CCCEEEEechhhCCH---------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 567999999999721 23344555444110 1 1257899999976 6
Q ss_pred ccchhccCCCCcc---cEEEecC--C-CHHHHHHHHHHHHcC------CCCCchhhHHHHHHHC---CCC------Cccc
Q psy5642 100 RIDKALLRPGRLD---RLIYVPL--P-DDLTRAAILKIRLAR------SPLGEDVCVEELVRLT---EGY------SGAE 158 (237)
Q Consensus 100 ~ld~al~r~gRf~---~~i~~~~--P-~~~~R~~il~~~l~~------~~~~~~~~~~~la~~t---~g~------s~~D 158 (237)
.++++|++ ||+ ..+.++. + ..+....+++.+... ...-.+..+..|.... .|- +.++
T Consensus 266 ~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~ 343 (604)
T 3k1j_A 266 KMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRD 343 (604)
T ss_dssp HSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHH
T ss_pred hcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHH
Confidence 89999999 997 4555543 2 345566666543321 1111445555555543 331 2334
Q ss_pred ccchhHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhh
Q psy5642 159 QSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQL 218 (237)
Q Consensus 159 l~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~ 218 (237)
+.++++.|...+..++ ...|+.+|+.+|++.
T Consensus 344 ---------------------------l~~llr~A~~~A~~~~--~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 344 ---------------------------LGGIVRAAGDIAVKKG--KKYVEREDVIEAVKM 374 (604)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHhcC--cccccHHHHHHHHHh
Confidence 8888888877665554 446999999999965
No 86
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.00045 Score=58.94 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
.+.|++|||+|.+.. ...+.|+..++.. .....+|++||.+..+.+++++ |+. .+.++.+
T Consensus 110 ~~~viiiDe~~~l~~---------------~~~~~L~~~le~~--~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l 169 (340)
T 1sxj_C 110 GFKLIILDEADAMTN---------------AAQNALRRVIERY--TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPL 169 (340)
T ss_dssp SCEEEEETTGGGSCH---------------HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCC
T ss_pred CceEEEEeCCCCCCH---------------HHHHHHHHHHhcC--CCCeEEEEEecCccccchhHHh--hce-eEeccCC
Confidence 368999999998832 1245566666653 2456778889999999999999 986 6899999
Q ss_pred CHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 121 DDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
+.++..+++...+...... .+..+..++..+.|
T Consensus 170 ~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 170 PQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp CHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999999888544433 44556667765543
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.19 E-value=0.00035 Score=71.11 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=61.8
Q ss_pred ccccCh----HHHHHHHHHHHHHhcCCeEEEEccccccccccCC---CCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEE
Q psy5642 20 RKYVGE----SERCVRDVFKRARQVSPSVIFFDELDSLAGERGD---GGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIV 92 (237)
Q Consensus 20 ~~~~g~----~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~---~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI 92 (237)
++|+++ +++.++.+|..|+...||+|++|++|+|++.+.. ..+.. .....|+++++|..|++.....+|+||
T Consensus 1135 ~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~-~~~~~r~~~q~l~~~~~~~~~~~v~v~ 1213 (1706)
T 3cmw_A 1135 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH-MGLAARMMSQAMRKLAGNLKQSNTLLI 1213 (1706)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC-TTHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccccccccccccc-ccHHHHHHHHHHHHHHhhhccCCeEEE
Confidence 788888 9999999999999999999999999999998532 22211 256678999999999997776788888
Q ss_pred EEeCCC
Q psy5642 93 AATNRP 98 (237)
Q Consensus 93 ~ttn~~ 98 (237)
+||+.
T Consensus 1214 -~~n~~ 1218 (1706)
T 3cmw_A 1214 -FINQI 1218 (1706)
T ss_dssp -EEECE
T ss_pred -Eeccc
Confidence 55654
No 88
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.14 E-value=0.00031 Score=59.29 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=60.3
Q ss_pred CceEEEEEecccccccc-------------cChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHH
Q psy5642 6 GLTEVVESIGPELFRKY-------------VGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERV 72 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~-------------~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 72 (237)
.+.+|+.++|+.+.... .|... .....|..|. +++|||||+|.+.. .+
T Consensus 52 ~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a~---~g~L~LDEi~~l~~---------------~~ 112 (304)
T 1ojl_A 52 SDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEAD---GGTLFLDEIGDISP---------------LM 112 (304)
T ss_dssp SSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHHT---TSEEEEESCTTCCH---------------HH
T ss_pred cCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhcC---CCEEEEeccccCCH---------------HH
Confidence 45789999998764311 11111 1223344443 57999999999832 23
Q ss_pred HHHHHHHhcCCC---------CCCCEEEEEEeCCC-------CccchhccCCCCcccEEEecCCCHH----HHHHHHHHH
Q psy5642 73 LAQMLTEMDGIV---------PLNNVTIVAATNRP-------DRIDKALLRPGRLDRLIYVPLPDDL----TRAAILKIR 132 (237)
Q Consensus 73 ~~~ll~~l~~~~---------~~~~v~vI~ttn~~-------~~ld~al~r~gRf~~~i~~~~P~~~----~R~~il~~~ 132 (237)
...|+..++... ...++.||++||.+ ..+++.+.. ||. .+.+..|... +...+++.+
T Consensus 113 q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~ 189 (304)
T 1ojl_A 113 QVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHF 189 (304)
T ss_dssp HHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHH
T ss_pred HHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHH
Confidence 455666665432 12358899999975 134555665 664 4555555544 444466655
Q ss_pred Hc
Q psy5642 133 LA 134 (237)
Q Consensus 133 l~ 134 (237)
+.
T Consensus 190 l~ 191 (304)
T 1ojl_A 190 LR 191 (304)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.10 E-value=0.0011 Score=70.27 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=73.9
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHH---------------hcCCeEEEEccccccccccCCCCCCCCCchHHH
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRAR---------------QVSPSVIFFDELDSLAGERGDGGGGGGSNVQER 71 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~---------------~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~ 71 (237)
+..++.++++...+ ...+...+...- ...++||||||++....++.+. ....+
T Consensus 1293 ~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~------q~~le 1360 (2695)
T 4akg_A 1293 LYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGS------QNVVL 1360 (2695)
T ss_dssp SCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSC------CHHHH
T ss_pred CCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCc------hhHHH
Confidence 45677777766543 234445554321 1234799999998744433221 12234
Q ss_pred HHHHHHHHhcCCCC---C-----CCEEEEEEeCCCC-----ccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcC
Q psy5642 72 VLAQMLTEMDGIVP---L-----NNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLAR 135 (237)
Q Consensus 72 ~~~~ll~~l~~~~~---~-----~~v~vI~ttn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~ 135 (237)
++.++++. .+... . .++.+||++|.|. .|+++++| || ..++++.|+.+++..|+..+++.
T Consensus 1361 lLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1361 FLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp HHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 44554432 11111 1 2589999999994 89999999 99 78999999999999999987753
No 90
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.05 E-value=0.0035 Score=51.27 Aligned_cols=75 Identities=24% Similarity=0.179 Sum_probs=45.4
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCC---------CCCCEEEEEEeCCC-------Cccchh
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIV---------PLNNVTIVAATNRP-------DRIDKA 104 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vI~ttn~~-------~~ld~a 104 (237)
.+++|||||+|.+.. .+...|+..++.-. ...++.+|+|||.+ ..+++.
T Consensus 100 ~~~~l~lDEi~~l~~---------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~ 164 (265)
T 2bjv_A 100 DGGTLFLDELATAPM---------------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRAD 164 (265)
T ss_dssp TTSEEEEESGGGSCH---------------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHH
T ss_pred CCcEEEEechHhcCH---------------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHH
Confidence 467999999998833 23344555554310 12357889999874 246788
Q ss_pred ccCCCCcccEEEecCCCHH----HHHHHHHHHH
Q psy5642 105 LLRPGRLDRLIYVPLPDDL----TRAAILKIRL 133 (237)
Q Consensus 105 l~r~gRf~~~i~~~~P~~~----~R~~il~~~l 133 (237)
+.+ ||.. +.+..|... +...+++.++
T Consensus 165 L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 165 LLD--ALAF-DVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp HHH--HHCS-EEEECCCGGGCHHHHHHHHHHHH
T ss_pred HHH--hhcC-cEEeCCChhhhhHHHHHHHHHHH
Confidence 888 8863 444444443 4444555444
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.61 E-value=0.04 Score=46.14 Aligned_cols=107 Identities=23% Similarity=0.315 Sum_probs=65.2
Q ss_pred HHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch---------hccC
Q psy5642 37 ARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK---------ALLR 107 (237)
Q Consensus 37 a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~---------al~r 107 (237)
+....|.+|+|||++.+...... . + ..+...+...++.. .++.+|.|++....+.. .+.
T Consensus 124 ~~~~~~~vlvlDe~~~~~~~~~~-~----~---~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~- 191 (350)
T 2qen_A 124 GEELGEFIVAFDEAQYLRFYGSR-G----G---KELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY- 191 (350)
T ss_dssp HHHHSCEEEEEETGGGGGGBTTT-T----T---HHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT-
T ss_pred HhccCCEEEEEeCHHHHhccCcc-c----h---hhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc-
Confidence 33335999999999998641100 0 1 12233333333332 36666666654321221 222
Q ss_pred CCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCCCCc
Q psy5642 108 PGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEGYSG 156 (237)
Q Consensus 108 ~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~ 156 (237)
||+...+.+++.+.++-.+++...+...+.. ....+..+...|.|+..
T Consensus 192 -~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 192 -GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG 240 (350)
T ss_dssp -TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH
T ss_pred -cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 3666789999999999999999877654432 45677888889988764
No 92
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.48 E-value=0.0029 Score=50.04 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=52.0
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecC
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPL 119 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~ 119 (237)
..++||+|||++.+.+.+..... . ..++..+... ....+-+|.+|+.++.|+.++++ |++..++++.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e---~-------~rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK---I-------PENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC---C-------CHHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred cCceEEEEEChhhhccCccccch---h-------HHHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 35789999999999876532211 0 1255555543 23456778888889999999999 9999999998
Q ss_pred CCHHHH
Q psy5642 120 PDDLTR 125 (237)
Q Consensus 120 P~~~~R 125 (237)
|....+
T Consensus 153 ~~~~~~ 158 (199)
T 2r2a_A 153 NKMGMR 158 (199)
T ss_dssp CSSCCE
T ss_pred cccCcc
Confidence 755443
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.41 E-value=0.042 Score=46.13 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=66.2
Q ss_pred HHHHHHHHHhc--CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccch----
Q psy5642 30 VRDVFKRARQV--SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDK---- 103 (237)
Q Consensus 30 l~~~f~~a~~~--~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~---- 103 (237)
+..++...... .|.+|+|||++.+...... .. ...+..+... . .++.+|.|++....+..
T Consensus 124 ~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~-------~~-~~~l~~~~~~---~---~~~~~i~~g~~~~~l~~~l~~ 189 (357)
T 2fna_A 124 FANLLESFEQASKDNVIIVLDEAQELVKLRGV-------NL-LPALAYAYDN---L---KRIKFIMSGSEMGLLYDYLRV 189 (357)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC-------CC-HHHHHHHHHH---C---TTEEEEEEESSHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCCeEEEEECHHHhhccCch-------hH-HHHHHHHHHc---C---CCeEEEEEcCchHHHHHHHhc
Confidence 44555555443 4999999999998652100 11 1223333322 1 35667777765322221
Q ss_pred -----hccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCCcc
Q psy5642 104 -----ALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYSGA 157 (237)
Q Consensus 104 -----al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~ 157 (237)
.+. ||+...+.++..+.++..+++...+...+...+ +...+...|.|+...
T Consensus 190 ~~~~~~l~--~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~~ 245 (357)
T 2fna_A 190 EDPESPLF--GRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPGW 245 (357)
T ss_dssp TCTTSTTT--TCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHHH
T ss_pred cCCCCccc--cCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHHH
Confidence 122 366678999999999999999987653222222 237888899887643
No 94
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.39 E-value=0.048 Score=46.21 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHh----cCCeEEEEccccc-cccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCC----
Q psy5642 28 RCVRDVFKRARQ----VSPSVIFFDELDS-LAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRP---- 98 (237)
Q Consensus 28 ~~l~~~f~~a~~----~~P~il~iDeid~-l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~---- 98 (237)
..++.+++.+.. ...-|++|||+|. +.. ...+.|+..+++.. ..+++|.+|+.+
T Consensus 59 ~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~---------------~~~~aLl~~le~p~--~~~~~il~~~~~~~~~ 121 (343)
T 1jr3_D 59 TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA---------------AINEQLLTLTGLLH--DDLLLIVRGNKLSKAQ 121 (343)
T ss_dssp CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT---------------THHHHHHHHHTTCB--TTEEEEEEESCCCTTT
T ss_pred CCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh---------------HHHHHHHHHHhcCC--CCeEEEEEcCCCChhh
Confidence 345666666553 2466999999887 521 13566788888743 344444444442
Q ss_pred --CccchhccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCC-chhhHHHHHHHCCC
Q psy5642 99 --DRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLG-EDVCVEELVRLTEG 153 (237)
Q Consensus 99 --~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 153 (237)
..+.+++.+ |. ..+.+..|+..+....++..+...+.. ....+..++..+.|
T Consensus 122 ~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 122 ENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp TTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 467788887 65 479999999999999999988776654 45566667765543
No 95
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.38 E-value=0.0018 Score=48.20 Aligned_cols=66 Identities=8% Similarity=0.022 Sum_probs=43.4
Q ss_pred CceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC
Q psy5642 6 GLTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP 85 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 85 (237)
.+.+|+ ++|+.+.+. ......|..+ .+++|||||+|.+.. .....++..|.. .
T Consensus 51 ~~~~~v-~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~~---------------~~q~~Ll~~l~~--~ 103 (145)
T 3n70_A 51 AQGEFV-YRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLTR---------------EQQYHLVQLQSQ--E 103 (145)
T ss_dssp TTSCCE-EEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSCH---------------HHHHHHHHHHHS--S
T ss_pred cCCCEE-EECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCCH---------------HHHHHHHHHHhh--c
Confidence 466888 999887654 3344556555 357999999998832 234456666644 2
Q ss_pred CCCEEEEEEeCCC
Q psy5642 86 LNNVTIVAATNRP 98 (237)
Q Consensus 86 ~~~v~vI~ttn~~ 98 (237)
..++.+|+|||.+
T Consensus 104 ~~~~~~I~~t~~~ 116 (145)
T 3n70_A 104 HRPFRLIGIGDTS 116 (145)
T ss_dssp SCSSCEEEEESSC
T ss_pred CCCEEEEEECCcC
Confidence 3456788888864
No 96
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.19 E-value=0.0035 Score=46.50 Aligned_cols=83 Identities=10% Similarity=0.193 Sum_probs=50.4
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNN 88 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 88 (237)
+|+.++|+.+...+ ...+|..+. +++|||||+|.+... ....++..++... ..+
T Consensus 53 ~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~~~---------------~q~~Ll~~l~~~~-~~~ 106 (143)
T 3co5_A 53 PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYSRN---------------IQTGITFIIGKAE-RCR 106 (143)
T ss_dssp CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCCHH---------------HHHHHHHHHHHHT-TTT
T ss_pred CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCCHH---------------HHHHHHHHHHhCC-CCC
Confidence 78999998876543 455666554 589999999998332 2333444444321 345
Q ss_pred EEEEEEeCCC-Cc----cchhccCCCCcc-cEEEecC
Q psy5642 89 VTIVAATNRP-DR----IDKALLRPGRLD-RLIYVPL 119 (237)
Q Consensus 89 v~vI~ttn~~-~~----ld~al~r~gRf~-~~i~~~~ 119 (237)
+.+|+|||.+ .. +++.+.. ||. ..|++|+
T Consensus 107 ~~iI~~tn~~~~~~~~~~~~~L~~--rl~~~~i~lPp 141 (143)
T 3co5_A 107 VRVIASCSYAAGSDGISCEEKLAG--LFSESVVRIPP 141 (143)
T ss_dssp CEEEEEEEECTTTC--CHHHHHHH--HSSSEEEEECC
T ss_pred EEEEEecCCCHHHHHhCccHHHHH--HhcCcEEeCCC
Confidence 7788888754 33 4444554 543 3455554
No 97
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.62 E-value=0.11 Score=46.43 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=75.5
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC-------CCCCCEEEEEEeCCCC-----------ccchh
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI-------VPLNNVTIVAATNRPD-----------RIDKA 104 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~v~vI~ttn~~~-----------~ld~a 104 (237)
.++|+||++.+- ..+...|+..|++- .-..++.||||+|... .|+++
T Consensus 302 Gvl~lDEIn~~~---------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~a 366 (506)
T 3f8t_A 302 GILAVDHLEGAP---------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQD 366 (506)
T ss_dssp SEEEEECCTTCC---------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHH
T ss_pred CeeehHhhhhCC---------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChH
Confidence 699999998862 23456666666531 1124689999999765 88999
Q ss_pred ccCCCCcccEE-EecCCCHHHHHHHHHHHHcCCCCCchhhHHH---HHH-H-CCC-CCcccccchhHHhhhhccccC---
Q psy5642 105 LLRPGRLDRLI-YVPLPDDLTRAAILKIRLARSPLGEDVCVEE---LVR-L-TEG-YSGAEQSLSKHRAKKIRPRRE--- 174 (237)
Q Consensus 105 l~r~gRf~~~i-~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~---la~-~-t~g-~s~~Dl~~~~~~a~~~~~~~~--- 174 (237)
+++ |||..+ .+++|+.+.-.+- ..+.-+...+.. .|. . ..- .+..-...+++.....+....
T Consensus 367 lLD--RFDLi~i~~d~pd~e~d~e~------~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~ 438 (506)
T 3f8t_A 367 FLS--HFDLIAFLGVDPRPGEPEEQ------DTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERL 438 (506)
T ss_dssp HHT--TCSEEEETTC--------------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhh--heeeEEEecCCCChhHhhcc------cCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccc
Confidence 999 998644 4566765542110 000001111111 111 0 001 111111111111111110000
Q ss_pred --CCCCCCCCchhHHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcC
Q psy5642 175 --SNPGPPACKPSIVAVCDEAALSALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 175 --~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
.......++..+..+++-|...|..+. ...|+.+|+..|++-++
T Consensus 439 ~~~~~~~giSpR~leaLiRlA~A~A~L~g--R~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 439 GMGLPTLPVTRRQLESVERLAKAHARMRL--SDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHcC--cCCCCHHHHHHHHHHHH
Confidence 001233444457788887777777766 44689999999987654
No 98
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.15 E-value=0.033 Score=48.42 Aligned_cols=107 Identities=22% Similarity=0.271 Sum_probs=55.0
Q ss_pred CceEEEEEecccccccc-------------cChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHH
Q psy5642 6 GLTEVVESIGPELFRKY-------------VGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERV 72 (237)
Q Consensus 6 ~~~~~i~v~~s~l~~~~-------------~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 72 (237)
...+|+.++|+.+-... .|... .-...|..|. .++|||||++.+-. .+
T Consensus 187 ~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~---~gtlfldei~~l~~---------------~~ 247 (387)
T 1ny5_A 187 SKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELAD---GGTLFLDEIGELSL---------------EA 247 (387)
T ss_dssp TTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTT---TSEEEEESGGGCCH---------------HH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCC---CcEEEEcChhhCCH---------------HH
Confidence 45789999998753210 00000 0112334433 37999999999832 23
Q ss_pred HHHHHHHhcCC-----CC----CCCEEEEEEeCCCCccchhccCCCCccc-------EEEecCCCH----HHHHHHHHHH
Q psy5642 73 LAQMLTEMDGI-----VP----LNNVTIVAATNRPDRIDKALLRPGRLDR-------LIYVPLPDD----LTRAAILKIR 132 (237)
Q Consensus 73 ~~~ll~~l~~~-----~~----~~~v~vI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~----~~R~~il~~~ 132 (237)
...|+..|+.- .. ..++.+|++||. .+...+ ..|+|.. .+.+..|.. ++...++.++
T Consensus 248 q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~--~l~~~~-~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~ 324 (387)
T 1ny5_A 248 QAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR--NIKELV-KEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHF 324 (387)
T ss_dssp HHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS--CHHHHH-HTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC--CHHHHH-HcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHH
Confidence 44455554421 11 124778999985 222222 2355531 244555554 4445555555
Q ss_pred Hc
Q psy5642 133 LA 134 (237)
Q Consensus 133 l~ 134 (237)
+.
T Consensus 325 l~ 326 (387)
T 1ny5_A 325 LK 326 (387)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.09 E-value=0.015 Score=49.46 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=51.4
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCC
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPL 86 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 86 (237)
.+.|+.+...+..+.+..+.+..+..+++...... +|+||+++.+..........+.. .+.+..++..|.++...
T Consensus 150 ~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G~v---~~~lrqlL~~L~~~~k~ 224 (331)
T 2vhj_A 150 KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSGGI---SRGAFDLLSDIGAMAAS 224 (331)
T ss_dssp TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----------C---CHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccchH---HHHHHHHHHHHHHHHhh
Confidence 34555553334444455667778888888777654 99999999986544321111111 12344444444443333
Q ss_pred CCEEEEEEeCCCCccchhc
Q psy5642 87 NNVTIVAATNRPDRIDKAL 105 (237)
Q Consensus 87 ~~v~vI~ttn~~~~ld~al 105 (237)
.++.+|+++| +...++++
T Consensus 225 ~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 225 RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp HTCEEEEECC-CSSCSSSH
T ss_pred CCCEEEEEeC-CcccchhH
Confidence 4677888888 56666654
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.88 E-value=0.09 Score=39.16 Aligned_cols=77 Identities=9% Similarity=0.175 Sum_probs=42.9
Q ss_pred EEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCC
Q psy5642 9 EVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNN 88 (237)
Q Consensus 9 ~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 88 (237)
..+++++.++... +....|.+|+|||++.+.... +..+-.+++.+.. .+.
T Consensus 66 ~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~------------~~~l~~li~~~~~---~g~ 115 (149)
T 2kjq_A 66 NAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE------------QALLFSIFNRFRN---SGK 115 (149)
T ss_dssp CEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH------------HHHHHHHHHHHHH---HTC
T ss_pred cEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH------------HHHHHHHHHHHHH---cCC
Confidence 3566677666543 112368899999998753221 2334444444332 223
Q ss_pred E-EEEEEeC-CCCccc--hhccCCCCcccEEEec
Q psy5642 89 V-TIVAATN-RPDRID--KALLRPGRLDRLIYVP 118 (237)
Q Consensus 89 v-~vI~ttn-~~~~ld--~al~r~gRf~~~i~~~ 118 (237)
. ++| ||+ .|..+. +.+++ ||..-+.+.
T Consensus 116 ~~iii-ts~~~p~~l~~~~~L~S--Rl~~g~~~~ 146 (149)
T 2kjq_A 116 GFLLL-GSEYTPQQLVIREDLRT--RMAYCLVYE 146 (149)
T ss_dssp CEEEE-EESSCTTTSSCCHHHHH--HGGGSEECC
T ss_pred cEEEE-ECCCCHHHccccHHHHH--HHhcCeeEE
Confidence 3 444 555 565454 78888 886555443
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.47 E-value=0.74 Score=49.37 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=70.2
Q ss_pred ceEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC---
Q psy5642 7 LTEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI--- 83 (237)
Q Consensus 7 ~~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--- 83 (237)
+.+++.++|++-++ ...+..+|..+... .+.++|||++.+-..- -+.....+..+...+...
T Consensus 670 g~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~ev--------Ls~l~~~l~~i~~al~~~~~~ 734 (2695)
T 4akg_A 670 GRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDEKV--------LSAVSANIQQIQNGLQVGKSH 734 (2695)
T ss_dssp TCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHH--------HHHHHHHHHHHHHHHHHTCSE
T ss_pred CCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcChHH--------HHHHHHHHHHHHHHHHcCCcE
Confidence 45678888987665 46678888877764 5899999998763210 001111111222222111
Q ss_pred --------CCCCCEEEEEEeC----CCCccchhccCCCCcccEEEecCCCHHHHHHHHHHH
Q psy5642 84 --------VPLNNVTIVAATN----RPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIR 132 (237)
Q Consensus 84 --------~~~~~v~vI~ttn----~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~~ 132 (237)
.-..+..|++|.| ....+|+++++ ||- .|.+..|+.+...+|+...
T Consensus 735 i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr-~v~m~~Pd~~~i~ei~l~s 792 (2695)
T 4akg_A 735 ITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SFR-EFSMKSPQSGTIAEMILQI 792 (2695)
T ss_dssp EECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TEE-EEECCCCCHHHHHHHHHHH
T ss_pred EeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--heE-EEEeeCCCHHHHHHHHHHh
Confidence 1123467888888 45689999999 995 6999999999888886543
No 102
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.75 E-value=0.24 Score=51.60 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcccccccccc---CCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeC
Q psy5642 25 ESERCVRDVFKRARQVSPSVIFFDELDSLAGER---GDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATN 96 (237)
Q Consensus 25 ~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~---~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 96 (237)
..++.++.++..++..+|++|+||+++.+.+.. +...++. .....++++.++..|.+.....+++||.|--
T Consensus 1489 ~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~-~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1489 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH-MGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC-TTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccc-cchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 457888889999999999999999999988743 1111111 1124678888888887766666776666643
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.31 E-value=0.65 Score=50.43 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=54.4
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCC-------CCCEEEEEEeCCC-----CccchhccCCCC
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVP-------LNNVTIVAATNRP-----DRIDKALLRPGR 110 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~v~vI~ttn~~-----~~ld~al~r~gR 110 (237)
.|+||||++--..+.-+. .....++..+++.=.-+.. -.++.+|||.|.| ..|+++++| |
T Consensus 1376 ~VlFiDDiNmp~~D~yGt------Q~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~ 1447 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKYGT------QRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--H 1447 (3245)
T ss_dssp EEEEETTTTCCCCCTTSC------CHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred EEEEecccCCCCcccccc------ccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--h
Confidence 599999998533222111 1123444444443110111 1358899999987 469999999 9
Q ss_pred cccEEEecCCCHHHHHHHHHHHHc
Q psy5642 111 LDRLIYVPLPDDLTRAAILKIRLA 134 (237)
Q Consensus 111 f~~~i~~~~P~~~~R~~il~~~l~ 134 (237)
|.. ++++.|+.++-..|+..++.
T Consensus 1448 F~v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1448 API-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CCE-EECCCCCHHHHHHHHHHHHH
T ss_pred ceE-EEeCCCCHHHHHHHHHHHHH
Confidence 964 99999999999999876543
No 104
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.26 E-value=5.7 Score=33.92 Aligned_cols=125 Identities=12% Similarity=0.034 Sum_probs=72.3
Q ss_pred eEEEEEecccccccccChH----HHHHHHHHHHHHh--cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc
Q psy5642 8 TEVVESIGPELFRKYVGES----ERCVRDVFKRARQ--VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD 81 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~----~~~l~~~f~~a~~--~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 81 (237)
.+++.++-+.|.+....-. -..+..+|..+.. ..|.++++||++.++.... ......+..++....
T Consensus 223 ~~~vv~dl~~l~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~i~iDEa~~~~~~~~--------~~~~~~l~~~~~~~R 294 (392)
T 4ag6_A 223 SDFIVFDVHDLQNAEDQVKRAQYFNVLSFAWNILERDRRERTVLVVDEAWMLVDPQT--------PQAIAFLRDTSKRIR 294 (392)
T ss_dssp SSEEEEECGGGTTSCHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEETTGGGGCCTTC--------THHHHHHHHHHHHGG
T ss_pred CCEEEEEchhhhcCCHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEecHHHHhCcCc--------hHHHHHHHHHHHHhh
Confidence 4677777777764210000 1234445555554 3589999999999986321 122334444444444
Q ss_pred CCCCCCCEEEEEEeCCCCccch--------hccCCCCcccEEEecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCC
Q psy5642 82 GIVPLNNVTIVAATNRPDRIDK--------ALLRPGRLDRLIYVPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTE 152 (237)
Q Consensus 82 ~~~~~~~v~vI~ttn~~~~ld~--------al~r~gRf~~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~ 152 (237)
. .++.++.+|-++.++.. +++. ..+..|.++.+. .++..+ ...+. + ++...+.|.....
T Consensus 295 k----~g~~~~~~tQ~~~d~~~~~~~~~~~~il~--n~~~~i~l~~~~-~~~~~~-~~~~~---l-s~~e~~~l~~~~~ 361 (392)
T 4ag6_A 295 K----YNGSLIVISQNVIDFLAPEVQRYGQALLD--NPTYKLLLAQGE-KDLEAI-TTLMN---L-SEAEHDLLVNAKR 361 (392)
T ss_dssp G----GTCEEEEEESCGGGGGSTTTHHHHHHHHH--SCSEEEECSCCH-HHHHHH-HHHTT---C-CHHHHHHHHTCCT
T ss_pred h----hCeEEEEEcCCHHHhhChhhHHHHHHHHH--hhhhhheeCCCh-hhHHHH-HHHhC---C-CHHHHHhccCCCC
Confidence 3 35677888888888864 5666 667788888764 444444 33333 3 3455555555443
No 105
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=85.97 E-value=0.82 Score=39.20 Aligned_cols=75 Identities=21% Similarity=0.373 Sum_probs=42.4
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCC-----CCC----CCEEEEEEeCCCCccchhccCCCCcc
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI-----VPL----NNVTIVAATNRPDRIDKALLRPGRLD 112 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~~----~~v~vI~ttn~~~~ld~al~r~gRf~ 112 (237)
..+||||||+.+-. .+...|+..|+.- -.. -++-+|++||. ++...+. .|+|.
T Consensus 223 ~gtlfldei~~l~~---------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~--~l~~~v~-~g~fr 284 (368)
T 3dzd_A 223 QGTLFLDEVGELDQ---------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK--NLEEEIK-KGNFR 284 (368)
T ss_dssp TSEEEEETGGGSCH---------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS--CHHHHHH-TTSSC
T ss_pred CCeEEecChhhCCH---------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC--CHHHHHH-cCCcc
Confidence 36899999999822 2345555555421 111 14678888884 3333333 35664
Q ss_pred c---------EEEecCCCH--HHHHHHHHHHHc
Q psy5642 113 R---------LIYVPLPDD--LTRAAILKIRLA 134 (237)
Q Consensus 113 ~---------~i~~~~P~~--~~R~~il~~~l~ 134 (237)
. .|++|+... ++...++.+++.
T Consensus 285 ~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 285 EDLYYRLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp HHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 3 455555544 556666666664
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=85.55 E-value=5.9 Score=29.97 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=37.9
Q ss_pred HhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEe--CCCCccchhccCCCCcc-cE
Q psy5642 38 RQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAAT--NRPDRIDKALLRPGRLD-RL 114 (237)
Q Consensus 38 ~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt--n~~~~ld~al~r~gRf~-~~ 114 (237)
....|.+|++||++-...- + ......+...+.. .+..+|.++ ++...+-..+.+ |-+ .+
T Consensus 96 l~~~p~llilDEigp~~~l---------d---~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~--r~~~~i 157 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELF---------S---KKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRR--LPGAVL 157 (178)
T ss_dssp HHCTTCEEEECCCSTTGGG---------C---HHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHT--CTTCEE
T ss_pred cccCCCEEEEeCCCCcccC---------C---HHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHh--cCCcEE
Confidence 5678999999997633221 1 2334555566655 233355555 344445455666 543 45
Q ss_pred EEecCCCH
Q psy5642 115 IYVPLPDD 122 (237)
Q Consensus 115 i~~~~P~~ 122 (237)
+++...+.
T Consensus 158 ~~~~~~~r 165 (178)
T 1ye8_A 158 IELTPENR 165 (178)
T ss_dssp EECCTTTT
T ss_pred EEecCcCH
Confidence 67766654
No 107
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=82.65 E-value=0.35 Score=41.84 Aligned_cols=69 Identities=16% Similarity=0.338 Sum_probs=45.5
Q ss_pred cCCeEEEEcccccccc-ccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEec
Q psy5642 40 VSPSVIFFDELDSLAG-ERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVP 118 (237)
Q Consensus 40 ~~P~il~iDeid~l~~-~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~ 118 (237)
.+..++++||++.+.. .+.-... ... .....+.+.+++ .+.|+++||+++.+ +++.+|||++..++..
T Consensus 215 ~q~~~~l~dd~~~~~~~~r~l~~~---~~~--~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l 283 (377)
T 1svm_A 215 IDQFLVVFEDVKGTGGESRDLPSG---QGI--NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSV 283 (377)
T ss_dssp TTCSCEEETTCCCSTTTTTTCCCC---SHH--HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCC
T ss_pred cchhHHHHHHHHHHHHHHhhcccc---Ccc--hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhh
Confidence 4567889999998875 2221110 110 122445555655 34678899999999 7899999998877665
Q ss_pred C
Q psy5642 119 L 119 (237)
Q Consensus 119 ~ 119 (237)
+
T Consensus 284 ~ 284 (377)
T 1svm_A 284 P 284 (377)
T ss_dssp C
T ss_pred c
Confidence 5
No 108
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=80.26 E-value=2.3 Score=38.80 Aligned_cols=74 Identities=18% Similarity=0.319 Sum_probs=53.2
Q ss_pred eEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC--ccchhccCCCCcccEEEecCC
Q psy5642 43 SVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD--RIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 43 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~--~ld~al~r~gRf~~~i~~~~P 120 (237)
.+|+|||+..++.... ..+ ...+..|-..-..-+|.+|.+|.+|+ .|+..++. -|...|-+...
T Consensus 345 ivvVIDE~~~L~~~~~-----------~~~-~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----------KKV-EELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEESCCTTHHHHTC-----------HHH-HHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred EEEEEeCHHHHhhhhh-----------HHH-HHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 5999999998875321 112 22233222222335799999999988 89999998 89889999999
Q ss_pred CHHHHHHHHH
Q psy5642 121 DDLTRAAILK 130 (237)
Q Consensus 121 ~~~~R~~il~ 130 (237)
+..+...+|-
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9988888873
No 109
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=78.12 E-value=18 Score=35.33 Aligned_cols=85 Identities=12% Similarity=0.116 Sum_probs=53.7
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecC-
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPL- 119 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~- 119 (237)
.+.+|+|||++... .+..+ ..+..||.||+.+.-... .. .-...+.++.
T Consensus 236 ~~~LlvlDd~~~~~------------------------~~~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~ 285 (1249)
T 3sfz_A 236 PRSLLILDDVWDPW------------------------VLKAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESG 285 (1249)
T ss_dssp CSCEEEEESCCCHH------------------------HHTTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSS
T ss_pred CCEEEEEecCCCHH------------------------HHHhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCC
Confidence 38999999997531 11222 134568889887543211 11 2345688886
Q ss_pred CCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCC
Q psy5642 120 PDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYS 155 (237)
Q Consensus 120 P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 155 (237)
++.++-.++|................++++++.|+.
T Consensus 286 l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 286 LGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp CCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred CCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 889999999988775433333445778888887653
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=77.65 E-value=3 Score=31.17 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=26.3
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD 99 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 99 (237)
.|.+|+|||++.... +......+..+++.... .+..+|.|||.+.
T Consensus 100 ~~~llilDE~~~~~~----------~~~~~~~l~~ll~~~~~----~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 100 NSPVLVLDDLGSERL----------SDWQRELISYIITYRYN----NLKSTIITTNYSL 144 (180)
T ss_dssp TCSEEEEETCSSSCC----------CHHHHHHHHHHHHHHHH----TTCEEEEECCCCS
T ss_pred CCCEEEEeCCCCCcC----------CHHHHHHHHHHHHHHHH----cCCCEEEEcCCCh
Confidence 689999999975421 22334455555554432 2345677777753
No 111
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=74.08 E-value=20 Score=32.11 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=49.7
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEe---
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYV--- 117 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~--- 117 (237)
.|.+|+|||++.. . .+..+ ..+..||.||+.+.-.. .. . ...+.+
T Consensus 236 ~~~LLVLDdv~~~-----------------~----~l~~l-----~~~~~ilvTsR~~~~~~-~~-~----~~~~~v~~l 283 (591)
T 1z6t_A 236 PRSLLILDDVWDS-----------------W----VLKAF-----DSQCQILLTTRDKSVTD-SV-M----GPKYVVPVE 283 (591)
T ss_dssp TTCEEEEEEECCH-----------------H----HHHTT-----CSSCEEEEEESCGGGGT-TC-C----SCEEEEECC
T ss_pred CCeEEEEeCCCCH-----------------H----HHHHh-----cCCCeEEEECCCcHHHH-hc-C----CCceEeecC
Confidence 6899999999742 0 11222 23556777887643221 11 1 233444
Q ss_pred cCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCCC
Q psy5642 118 PLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGYS 155 (237)
Q Consensus 118 ~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 155 (237)
...+.++-.++|...+.............++.+|.|+.
T Consensus 284 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 35788999999988775422112345678888887764
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.73 E-value=16 Score=40.07 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=67.0
Q ss_pred eEEEEEecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc------
Q psy5642 8 TEVVESIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD------ 81 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~------ 81 (237)
.+++.++|++-++ .+.+.++|.-+.. ..+-.+|||++.+-. ++++.+..++.
T Consensus 630 r~~~vfnC~~~~d------~~~~g~i~~G~~~-~GaW~cfDEfNrl~~---------------~vLSvv~~qi~~I~~a~ 687 (3245)
T 3vkg_A 630 RFVLVFCCDEGFD------LQAMSRIFVGLCQ-CGAWGCFDEFNRLEE---------------RILSAVSQQIQTIQVAL 687 (3245)
T ss_dssp CCEEEEECSSCCC------HHHHHHHHHHHHH-HTCEEEEETTTSSCH---------------HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCC------HHHHHHHHhhHhh-cCcEEEehhhhcCCH---------------HHHHHHHHHHHHHHHHH
Confidence 4567778877654 3566777877766 357899999987621 23333333222
Q ss_pred -----------C--CCCCCCEEEEEEeC----CCCccchhccCCCCcccEEEecCCCHHHHHHHHHH
Q psy5642 82 -----------G--IVPLNNVTIVAATN----RPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKI 131 (237)
Q Consensus 82 -----------~--~~~~~~v~vI~ttn----~~~~ld~al~r~gRf~~~i~~~~P~~~~R~~il~~ 131 (237)
+ +.-.....|++|.| ....+|++++. ||-. |.+..||.+...+|+..
T Consensus 688 ~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~-v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 688 KENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRS-MAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEE-EECCSCCHHHHHHHHHH
T ss_pred HcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcEE-EEEeCCCHHHHHHHHHH
Confidence 1 11123477888887 35699999999 9965 99999999988888644
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=68.38 E-value=12 Score=29.18 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc----
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID---- 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld---- 102 (237)
......+........|.+|+|||.-.+.....+ .......+..++..+.. .++.||.+|+......
T Consensus 121 ~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d------~~~~~~~l~~l~~~l~~----~g~tii~vtH~~~~~~~~~~ 190 (251)
T 2ehv_A 121 DNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE------ERKIREVLLKLNTILLE----MGVTTILTTEAPDPQHGKLS 190 (251)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS------GGGHHHHHHHHHHHHHH----HCCEEEEEECCC----CCSS
T ss_pred HHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC------HHHHHHHHHHHHHHHHH----CCCeEEEEECCCCCCccccc
Confidence 444555666666789999999999877643211 12234445566666643 2456777887766652
Q ss_pred -hhccCCCCc-ccEEEecC
Q psy5642 103 -KALLRPGRL-DRLIYVPL 119 (237)
Q Consensus 103 -~al~r~gRf-~~~i~~~~ 119 (237)
+.+.. .+ |.++.+..
T Consensus 191 ~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 191 RYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp SSSCGG--GGCSEEEEEEE
T ss_pred ccChhh--EeeeEEEEEee
Confidence 22333 45 77777753
No 114
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=67.57 E-value=5.1 Score=36.02 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=52.5
Q ss_pred CCe-EEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC--ccchhccCCCCcccEEEe
Q psy5642 41 SPS-VIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD--RIDKALLRPGRLDRLIYV 117 (237)
Q Consensus 41 ~P~-il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~--~ld~al~r~gRf~~~i~~ 117 (237)
.|- +|+|||+..++... ..-+..++..|-..-..-++.+|.+|.+|+ .++..++. -|...|-+
T Consensus 296 lP~ivlvIDE~~~ll~~~------------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l 361 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV------------GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAF 361 (512)
T ss_dssp CCEEEEEEETHHHHHHHH------------HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE
T ss_pred CCcEEEEEeCHHHHHhhh------------hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEE
Confidence 364 89999998876421 011223333332221223688889999987 68888888 88889999
Q ss_pred cCCCHHHHHHHHH
Q psy5642 118 PLPDDLTRAAILK 130 (237)
Q Consensus 118 ~~P~~~~R~~il~ 130 (237)
...+..+...++.
T Consensus 362 rv~s~~dsr~ilg 374 (512)
T 2ius_A 362 TVSSKIDSRTILD 374 (512)
T ss_dssp CCSSHHHHHHHHS
T ss_pred EcCCHHHHHHhcC
Confidence 9999999988875
No 115
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=64.62 E-value=41 Score=30.00 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=50.7
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEecCC
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~~~P 120 (237)
.+.+|+|||++... .+ .+.. . .+..||.||+...- .... +..+..+.++..
T Consensus 243 kr~LlVLDdv~~~~----------------~~--~~~~-~------~gs~ilvTTR~~~v-~~~~---~~~~~~~~l~~L 293 (549)
T 2a5y_B 243 PNTLFVFDDVVQEE----------------TI--RWAQ-E------LRLRCLVTTRDVEI-SNAA---SQTCEFIEVTSL 293 (549)
T ss_dssp TTEEEEEEEECCHH----------------HH--HHHH-H------TTCEEEEEESBGGG-GGGC---CSCEEEEECCCC
T ss_pred CcEEEEEECCCCch----------------hh--cccc-c------CCCEEEEEcCCHHH-HHHc---CCCCeEEECCCC
Confidence 38999999997631 11 1111 1 34467888886332 1111 123457899999
Q ss_pred CHHHHHHHHHHHHcCCCC-C-chhhHHHHHHHCCCCC
Q psy5642 121 DDLTRAAILKIRLARSPL-G-EDVCVEELVRLTEGYS 155 (237)
Q Consensus 121 ~~~~R~~il~~~l~~~~~-~-~~~~~~~la~~t~g~s 155 (237)
+.++-.++|..+....+. . ......+++.++.|..
T Consensus 294 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 294 EIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp CHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 999999999887533222 1 1123566777776653
No 116
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=56.52 E-value=16 Score=28.17 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccc
Q psy5642 30 VRDVFKRARQVSPSVIFFDELDSLAGE 56 (237)
Q Consensus 30 l~~~f~~a~~~~P~il~iDeid~l~~~ 56 (237)
+..+...+....|.+|+||++-.+...
T Consensus 108 ~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 108 LYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 344555555678999999999987653
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=55.09 E-value=38 Score=25.59 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCe--EEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCC
Q psy5642 27 ERCVRDVFKRARQVSPS--VIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRP 98 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~--il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 98 (237)
....+.+...+....|. +|+|||+..+.... ......+...+...... .++.||.++...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d--------~~~~~~~~~~l~~~~~~----~~~~vi~~~h~~ 168 (235)
T 2w0m_A 107 EELVNKVIEAKQKLGYGKARLVIDSVSALFLDK--------PAMARKISYYLKRVLNK----WNFTIYATSQYA 168 (235)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC--------GGGHHHHHHHHHHHHHH----TTEEEEEEEC--
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECchHhhcCC--------HHHHHHHHHHHHHHHHh----CCCeEEEEeccC
Confidence 34444555555666899 99999999875321 11223344433333322 356777777665
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=54.30 E-value=23 Score=30.09 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=31.8
Q ss_pred HHhcCCeEEEEccccccccccCCCCCCCC--CchHHHHHHHHHHHhcCCCCCCCEEEEEEeC
Q psy5642 37 ARQVSPSVIFFDELDSLAGERGDGGGGGG--SNVQERVLAQMLTEMDGIVPLNNVTIVAATN 96 (237)
Q Consensus 37 a~~~~P~il~iDeid~l~~~~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 96 (237)
.....+.+|+||.+..+.......+..+. .....+.+..++..|..+....++.||++..
T Consensus 148 ~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp HTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred HhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 33467899999999999853221111000 0122345566666665443445666666543
No 119
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=52.30 E-value=51 Score=28.19 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=51.1
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc--------hhccCCCCcc
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID--------KALLRPGRLD 112 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld--------~al~r~gRf~ 112 (237)
.|.++++||+..+.... .+..++....+ .++.++..|-++.++. .+++. -+.
T Consensus 279 ~~~~~~lDE~~~l~~~~--------------~l~~~~~~~R~----~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~--n~~ 338 (437)
T 1e9r_A 279 RRLWLFIDELASLEKLA--------------SLADALTKGRK----AGLRVVAGLQSTSQLDDVYGVKEAQTLRA--SFR 338 (437)
T ss_dssp CCEEEEESCGGGSCBCS--------------SHHHHHHHCTT----TTEEEEEEESCHHHHHHHHCHHHHHHHHT--TCC
T ss_pred ccEEEEEEcccccccch--------------hHHHHHHHHhc----cCCEEEEEecCHHHHHHHHCHHHHHHHHh--ccC
Confidence 57899999999986521 13444554444 4788888888888886 46777 788
Q ss_pred cEEEecCC--CHHHHHHHHHHHHc
Q psy5642 113 RLIYVPLP--DDLTRAAILKIRLA 134 (237)
Q Consensus 113 ~~i~~~~P--~~~~R~~il~~~l~ 134 (237)
..|.++.. +.+..+.+ ...+.
T Consensus 339 ~~i~~~~~~~d~~ta~~~-s~~lG 361 (437)
T 1e9r_A 339 SLVVLGGSRTDPKTNEDM-SLSLG 361 (437)
T ss_dssp EEEEEECCTTCHHHHHHH-HHHHC
T ss_pred cEEEEeCCCCCHHHHHHH-HHHcC
Confidence 88999888 77666655 44454
No 120
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=51.33 E-value=55 Score=25.97 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=30.3
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--+- -+......+..++..+.. . +..||.+|++++.+
T Consensus 163 ~iAraL~~~p~lllLDEPts~-----------LD~~~~~~l~~~l~~l~~---~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAG-----------VAPGLAHDIFNHVLELKA---K-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTT-----------CCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCSTT
T ss_pred HHHHHHHcCCCEEEEeCCccC-----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHHHH
Confidence 444555678999999994221 122333344444444422 2 44577778876654
No 121
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=50.14 E-value=14 Score=38.15 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=56.9
Q ss_pred EecccccccccChHHHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCC--CchHHHHHHHHHHHhcCCCCCCCEE
Q psy5642 13 SIGPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGG--SNVQERVLAQMLTEMDGIVPLNNVT 90 (237)
Q Consensus 13 v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~v~ 90 (237)
|+..+|.-.+...++..|..+...++..+|++|++|-+.+|.+...-.++.+. -....++.++.|.-|.+.-...++.
T Consensus 1481 v~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~ 1560 (1706)
T 3cmw_A 1481 VDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 1560 (1706)
T ss_dssp CCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred CCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcE
Confidence 34445555666777999999999999999999999999999987654433221 1234566666666665544445666
Q ss_pred EEEEeCC
Q psy5642 91 IVAATNR 97 (237)
Q Consensus 91 vI~ttn~ 97 (237)
+|++.-.
T Consensus 1561 ~i~~~~~ 1567 (1706)
T 3cmw_A 1561 LIFINQI 1567 (1706)
T ss_dssp EEEEECB
T ss_pred EEEeecc
Confidence 6766543
No 122
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=48.98 E-value=60 Score=25.96 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.+|++||--+- -+......+..++..+.. . +..||.+|++++.+
T Consensus 146 Rv~lAraL~~~p~lllLDEPts~-----------LD~~~~~~l~~~l~~l~~---~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEPLVG-----------LDREGKTDLLRIVEKWKT---L-GKTVILISHDIETV 201 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTT-----------CCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCTTT
T ss_pred HHHHHHHHHcCCCEEEEcCcccc-----------CCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 34555666778999999994321 122233334444444422 2 34577778876654
No 123
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=46.75 E-value=39 Score=26.78 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=29.9
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--+-+ +......+..++..+.. .+..||.+|++++.+
T Consensus 153 ~iAraL~~~p~lllLDEPts~L-----------D~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGL-----------DIDALKVVARGVNAMRG----PNFGALVITHYQRIL 206 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTT-----------CHHHHHHHHHHHHHHCS----TTCEEEEECSSSGGG
T ss_pred HHHHHHHcCCCEEEEeCCCcCC-----------CHHHHHHHHHHHHHHHh----cCCEEEEEecCHHHH
Confidence 4445566689999999953321 22223334444444422 244567777776543
No 124
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=46.62 E-value=23 Score=30.11 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCC--CchHHHHHHHHHHHhcCCCCCCCEEEEEE
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGG--SNVQERVLAQMLTEMDGIVPLNNVTIVAA 94 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~v~vI~t 94 (237)
+..+..+-.......|.+++||.+-.+++...-.+..+. .....+.+..++..|..+....++.||.+
T Consensus 125 e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 125 EQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred HHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 344443333444568999999999998862111111111 11334566666666655444445555544
No 125
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=46.41 E-value=82 Score=25.17 Aligned_cols=20 Identities=20% Similarity=0.079 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCeEEEEccc
Q psy5642 31 RDVFKRARQVSPSVIFFDEL 50 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDei 50 (237)
+-.+..|-...|.+|++||-
T Consensus 136 Rv~lAraL~~~p~lllLDEP 155 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEP 155 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECT
T ss_pred HHHHHHHHHhCCCEEEEECC
Confidence 34555667778999999994
No 126
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=46.20 E-value=61 Score=25.92 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=30.7
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.+..|-...|.+|++||--+- -+. .....++..|..+... +..||.+|.+++.+
T Consensus 174 ~iAraL~~~p~lLlLDEPts~-----------LD~---~~~~~l~~~l~~l~~~-g~tviivtHd~~~~ 227 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSG-----------LDI---DALKVVADGVNSLRDG-KRSFIIVTHYQRIL 227 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTT-----------CCH---HHHHHHHHHHHTTCCS-SCEEEEECSSGGGG
T ss_pred HHHHHHHhCCCEEEEeCCCCC-----------CCH---HHHHHHHHHHHHHHhc-CCEEEEEeeCHHHH
Confidence 444555668999999994221 122 2334455555555333 45567777765543
No 127
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=45.65 E-value=42 Score=25.87 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 27 ERCVRDVFKRARQV----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 27 ~~~l~~~f~~a~~~----~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
.......+..++.. ...+|+|||+-....-+--+ ...++..+.. ...+.-||.|+|.+ |
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~------------~~ev~~~l~~--Rp~~~~vIlTGr~a---p 164 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP------------LEEVISALNA--RPGHQTVIITGRGC---H 164 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC------------HHHHHHHHHT--SCTTCEEEEECSSC---C
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC------------HHHHHHHHHh--CcCCCEEEEECCCC---c
Confidence 45566777777653 46799999996533221111 3456677765 33567789999874 6
Q ss_pred hhccCCCCcccEEEec
Q psy5642 103 KALLRPGRLDRLIYVP 118 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~ 118 (237)
+.|+. ..|.+-++.
T Consensus 165 ~~l~e--~AD~VTem~ 178 (196)
T 1g5t_A 165 RDILD--LADTVSELR 178 (196)
T ss_dssp HHHHH--HCSEEEECC
T ss_pred HHHHH--hCcceeeec
Confidence 77777 777666654
No 128
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=45.10 E-value=16 Score=27.65 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=12.9
Q ss_pred CCeEEEEcccccccc
Q psy5642 41 SPSVIFFDELDSLAG 55 (237)
Q Consensus 41 ~P~il~iDeid~l~~ 55 (237)
.|.+|+||++..+..
T Consensus 105 ~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 105 NFALVVVDSITAHYR 119 (220)
T ss_dssp TEEEEEEECCCCCTT
T ss_pred CCCEEEEcCcHHHhh
Confidence 599999999998764
No 129
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=41.93 E-value=32 Score=23.18 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRL 111 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf 111 (237)
.++.......|.+|++|-- .+.. ++ -.++..+......-+++++.....+.....++.. | .
T Consensus 42 ~a~~~l~~~~~dlvi~d~~---l~~~--~g------------~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~-g-~ 102 (130)
T 3eod_A 42 DALELLGGFTPDLMICDIA---MPRM--NG------------LKLLEHIRNRGDQTPVLVISATENMADIAKALRL-G-V 102 (130)
T ss_dssp HHHHHHTTCCCSEEEECCC----------C------------HHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHH-C-C
T ss_pred HHHHHHhcCCCCEEEEecC---CCCC--CH------------HHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHc-C-C
Confidence 3444455667888888742 1110 00 2233333332222344444333333333444443 3 3
Q ss_pred ccEEEecCC--CHHHHHHHHHHHHcCC
Q psy5642 112 DRLIYVPLP--DDLTRAAILKIRLARS 136 (237)
Q Consensus 112 ~~~i~~~~P--~~~~R~~il~~~l~~~ 136 (237)
+. ++..| +.++-...++..+...
T Consensus 103 ~~--~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 103 ED--VLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp SE--EEESCC---CHHHHHHHHHHC--
T ss_pred CE--EEeCCCCcHHHHHHHHHHHhchh
Confidence 33 34444 5667777777776543
No 130
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=40.67 E-value=23 Score=37.29 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=41.4
Q ss_pred HHHHHHHHHh----cCCeEEEEcccccccc-cc--CCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC
Q psy5642 30 VRDVFKRARQ----VSPSVIFFDELDSLAG-ER--GDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR 97 (237)
Q Consensus 30 l~~~f~~a~~----~~P~il~iDeid~l~~-~~--~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~ 97 (237)
+..++..+.. ..|++|+||.+..+.. .. +..++.. .....+.++.++..|..+....++.||++..-
T Consensus 795 i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~-q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH-MGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC-TTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchh-hHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 4445554443 6899999999999986 22 1111111 13335567787777777666667777776543
No 131
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=40.42 E-value=49 Score=26.41 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD 99 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 99 (237)
-.+..|-...|.+|++||--+- -+...+..+..++..+.. . +..||.+|.+++
T Consensus 155 v~lAraL~~~p~lllLDEPts~-----------LD~~~~~~l~~~l~~l~~---~-g~tiiivtHd~~ 207 (256)
T 1vpl_A 155 LLIARALMVNPRLAILDEPTSG-----------LDVLNAREVRKILKQASQ---E-GLTILVSSHNML 207 (256)
T ss_dssp HHHHHHHTTCCSEEEEESTTTT-----------CCHHHHHHHHHHHHHHHH---T-TCEEEEEECCHH
T ss_pred HHHHHHHHcCCCEEEEeCCccc-----------cCHHHHHHHHHHHHHHHh---C-CCEEEEEcCCHH
Confidence 3445566678999999994221 123333444444444432 1 345666777644
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=40.40 E-value=12 Score=28.15 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=21.8
Q ss_pred eEEEEEecccccccccChH-HHHHHHHHHHHHhcCCeEEEEccccccc
Q psy5642 8 TEVVESIGPELFRKYVGES-ERCVRDVFKRARQVSPSVIFFDELDSLA 54 (237)
Q Consensus 8 ~~~i~v~~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~il~iDeid~l~ 54 (237)
.+++.+.++.+.....+.. ...+..++.... .+.+|+|||++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 83 VSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp CCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred CeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 4566667665543221100 001222333333 34699999997653
No 133
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=39.26 E-value=50 Score=25.57 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy5642 32 DVFKRARQVSPSVIFFDELD 51 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid 51 (237)
-.+..|-...|.+|++||--
T Consensus 142 v~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 142 VQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp HHHHHHTTSCCSEEEEESTT
T ss_pred HHHHHHHHhCCCEEEEECCC
Confidence 34555666789999999953
No 134
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=39.23 E-value=83 Score=25.38 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
-.+..|-...|.+|++||--+- -+......+..++..+.. . .+..||.+|.+++.+.
T Consensus 152 v~iAraL~~~P~lLlLDEPts~-----------LD~~~~~~i~~~l~~l~~--~-~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAG-----------LDPMGVSEIMKLLVEMQK--E-LGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTT-----------CCHHHHHHHHHHHHHHHH--H-HCCEEEEEESCCSSGG
T ss_pred HHHHHHHHcCCCEEEEECcccc-----------CCHHHHHHHHHHHHHHHh--h-CCCEEEEEecCHHHHH
Confidence 3455566678999999993221 122223333344444421 1 1446778888877553
No 135
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=38.87 E-value=17 Score=30.67 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccc
Q psy5642 27 ERCVRDVFKRARQVSPSVIFFDELDSLAG 55 (237)
Q Consensus 27 ~~~l~~~f~~a~~~~P~il~iDeid~l~~ 55 (237)
+..+..+...+....|.+|+||++..+..
T Consensus 125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 125 EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 33343333344456799999999999874
No 136
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=38.33 E-value=42 Score=25.77 Aligned_cols=60 Identities=15% Similarity=0.306 Sum_probs=31.7
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCCcccEEEe
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYV 117 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf~~~i~~ 117 (237)
-.+|++||+|.+.... .+ ...+..++..+.. +.-++..|+..+..+...+.+ .|..-+.+
T Consensus 167 ~~~lViDEah~~~~~~---------~~-~~~~~~i~~~~~~----~~~~l~lSAT~~~~~~~~~~~--~~~~p~~i 226 (230)
T 2oxc_A 167 IRLFILDEADKLLEEG---------SF-QEQINWIYSSLPA----SKQMLAVSATYPEFLANALTK--YMRDPTFV 226 (230)
T ss_dssp CCEEEESSHHHHHSTT---------SS-HHHHHHHHHHSCS----SCEEEEEESCCCHHHHHHHTT--TCSSCEEE
T ss_pred CCEEEeCCchHhhcCc---------ch-HHHHHHHHHhCCC----CCeEEEEEeccCHHHHHHHHH--HcCCCeEE
Confidence 3599999999986531 01 2334445554432 233444555555555555555 45443433
No 137
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=36.81 E-value=57 Score=26.16 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 32 DVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 32 ~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
-.+..|-...|.+|++||--+- -+...+..+..++..+.. . +..||.+|.+.+.
T Consensus 168 v~lAraL~~~p~lllLDEPts~-----------LD~~~~~~~~~~l~~l~~---~-g~tvi~vtHd~~~ 221 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDEPTSA-----------LDPEMVGEVLSVMKQLAN---E-GMTMVVVTHEMGF 221 (263)
T ss_dssp HHHHHHHTTCCSEEEEESTTTT-----------SCHHHHHHHHHHHHHHHH---T-TCEEEEECSCHHH
T ss_pred HHHHHHHHCCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHHh---C-CCEEEEEcCCHHH
Confidence 3445566678999999994221 122333444444444422 2 4456777776544
No 138
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=36.37 E-value=52 Score=26.25 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
+-.+..|-...|.+|++||--+- -+......+..++..+.. . +..||.+|++.+.
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~-----------LD~~~~~~~~~~l~~l~~---~-g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSA-----------LDPELVGEVLRIMQQLAE---E-GKTMVVVTHEMGF 215 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTT-----------SCHHHHHHHHHHHHHHHH---T-TCCEEEECSCHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCcc-----------CCHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHHH
Confidence 33455566678999999994221 122333444444444432 2 3456777776554
No 139
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=36.09 E-value=24 Score=26.87 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=39.1
Q ss_pred HHHHHHHHH-----hcCCeEEEEccccccccccCCCCCCCCCchHH--HHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 30 VRDVFKRAR-----QVSPSVIFFDELDSLAGERGDGGGGGGSNVQE--RVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 30 l~~~f~~a~-----~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~--~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
+..+...+. ...|.+|+|||.-.......... ....+ +....++..+..+....++.||.+|..... +
T Consensus 109 ~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~----~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~-~ 183 (231)
T 4a74_A 109 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR----GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN-G 183 (231)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCST----THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----
T ss_pred HHHHHHHHHHhcccCCceeEEEECChHHHhccccCCC----cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC-c
Confidence 344444444 56899999999887654322211 01111 112334444433322235667777765444 2
Q ss_pred hhccCCCCcccEEEecCC
Q psy5642 103 KALLRPGRLDRLIYVPLP 120 (237)
Q Consensus 103 ~al~r~gRf~~~i~~~~P 120 (237)
..+.. ...|..+.+...
T Consensus 184 g~~~~-~~~d~~l~l~~~ 200 (231)
T 4a74_A 184 GHILA-HSATLRVYLRKG 200 (231)
T ss_dssp -------CCSEEEEEEEC
T ss_pred chhhH-hhceEEEEEEec
Confidence 22222 134666666543
No 140
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=35.72 E-value=54 Score=25.75 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=13.6
Q ss_pred HHHHHHhcCCeEEEEccc
Q psy5642 33 VFKRARQVSPSVIFFDEL 50 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDei 50 (237)
.+..|-...|.+|++||-
T Consensus 149 ~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp HHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHcCCCEEEEcCC
Confidence 444555678999999994
No 141
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=35.59 E-value=1.2e+02 Score=23.75 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
+-.+..|-...|.+|++||--+- -+......+..++..+. . +..||.+|.+++.
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~-----------LD~~~~~~i~~~l~~~~---~--g~tviivtH~~~~ 206 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSA-----------LDYESEHVIMRNMHKIC---K--GRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSC-----------CCHHHHHHHHHHHHHHH---T--TSEEEEECSSGGG
T ss_pred HHHHHHHHhcCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHc---C--CCEEEEEeCCHHH
Confidence 33455566678999999994321 12233334444444442 1 3356666776553
No 142
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=35.16 E-value=69 Score=25.42 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=28.9
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
.+..|-...|.+|++||--+- -+......+..++..+.. ..+..||.+|++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~-----------LD~~~~~~l~~~l~~l~~---~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSA-----------LDLANQDIVLSLLIDLAQ---SQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTT-----------SCHHHHHHHHHHHHHHHH---TSCCEEEEEESCHHH
T ss_pred HHHHHHHcCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHH
Confidence 444555668999999994321 122233334444444422 223456677776544
No 143
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=35.12 E-value=20 Score=29.01 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=13.9
Q ss_pred HHHHhcCCeEEEEcccccccc
Q psy5642 35 KRARQVSPSVIFFDELDSLAG 55 (237)
Q Consensus 35 ~~a~~~~P~il~iDeid~l~~ 55 (237)
..+..+.|.+|+|||.-.+..
T Consensus 141 a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 141 YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHTTCCSEEEEEEEC----
T ss_pred HHHHhcCCCEEEEcCccccCC
Confidence 344667899999999988753
No 144
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=35.11 E-value=59 Score=20.07 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhccccCCccHHHHHHHHhhcC
Q psy5642 186 IVAVCDEAALSALENNLEAAYVSHQDFLTALQLVK 220 (237)
Q Consensus 186 i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~~ 220 (237)
+..+..+|...+...+ ...|+.+|+..|++..+
T Consensus 36 i~~l~~~A~~~a~~~k--RkTI~~~Di~~A~~~l~ 68 (68)
T 1b67_A 36 GEEIASEAVKLAKHAG--RKTIKAEDIELARKMFK 68 (68)
T ss_dssp HHHHHHHHHHHHHHTT--CSEECHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHcC--CCccCHHHHHHHHHhcC
Confidence 4555566666665554 45799999999988653
No 145
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=34.73 E-value=1.3e+02 Score=23.90 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=29.0
Q ss_pred HHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 33 VFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
.+..|-...|.+|++||--+- -+......+..++..+. . + ..||.+|++++.
T Consensus 165 ~lAraL~~~p~lllLDEPts~-----------LD~~~~~~i~~~l~~l~---~-~-~tviivtH~~~~ 216 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATSS-----------LDSKTEYLFQKAVEDLR---K-N-RTLIIIAHRLST 216 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCCT-----------TCHHHHHHHHHHHHHHT---T-T-SEEEEECSSGGG
T ss_pred HHHHHHHcCCCEEEEECcccc-----------CCHHHHHHHHHHHHHhc---C-C-CEEEEEcCCHHH
Confidence 455566668999999994321 12223344444444442 2 2 356667776553
No 146
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=34.20 E-value=43 Score=22.84 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=32.1
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCchhhHHHHHHHCCCC
Q psy5642 117 VPLPDDLTRAAILKIRLARSPLGEDVCVEELVRLTEGY 154 (237)
Q Consensus 117 ~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 154 (237)
+.+++.++|..-|+..|...+...+..+.+|..+..|+
T Consensus 60 LDl~sdeeR~~~LqelL~~C~~ptE~FI~eLL~rlkgl 97 (99)
T 1j2m_A 60 LELESEEERSRKIQGLLKSCTNPTENFVQELLVKLRGL 97 (99)
T ss_dssp HCCTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHTTTT
T ss_pred hcCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 45788999999999999877777889999999988775
No 147
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=32.60 E-value=1.2e+02 Score=23.28 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCeEEEEccc
Q psy5642 31 RDVFKRARQVSPSVIFFDEL 50 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDei 50 (237)
+-.+..|-...|.+|++||-
T Consensus 148 rv~laral~~~p~lllLDEP 167 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEP 167 (224)
T ss_dssp HHHHHHHTTTCCSEEEEEST
T ss_pred HHHHHHHHHcCCCEEEEeCC
Confidence 33445555678999999994
No 148
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=32.48 E-value=67 Score=25.77 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCeEEEEccc
Q psy5642 31 RDVFKRARQVSPSVIFFDEL 50 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDei 50 (237)
+-.+..|-...|.+|++||-
T Consensus 164 Rv~lAraL~~~p~lllLDEP 183 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNA 183 (271)
T ss_dssp HHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHhcCCCEEEEECC
Confidence 33555666678999999994
No 149
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=32.39 E-value=35 Score=29.37 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC
Q psy5642 29 CVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR 97 (237)
Q Consensus 29 ~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~ 97 (237)
.+..+...+....|.+|+||++-.++....... +.-...++.+..++..|..+....++.||.++..
T Consensus 261 ~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~--g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 261 LLDAAAQMMSESRFSLIVVDSVMALYRTDFSGR--GELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHhcCCceEEecchhhhCchhhcCc--cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 344444555567899999999988775432211 0011123444566666655544345666666654
No 150
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=32.22 E-value=58 Score=26.66 Aligned_cols=49 Identities=10% Similarity=0.025 Sum_probs=31.4
Q ss_pred EEEEEec-ccccccc-cChHH----HHHHHHHHHHHh--cCCeEEEEcccccccccc
Q psy5642 9 EVVESIG-PELFRKY-VGESE----RCVRDVFKRARQ--VSPSVIFFDELDSLAGER 57 (237)
Q Consensus 9 ~~i~v~~-s~l~~~~-~g~~~----~~l~~~f~~a~~--~~P~il~iDeid~l~~~~ 57 (237)
.|..||+ ++|+.+. .+... +-+.+.|..+.. ..+++|+||..|-|+.--
T Consensus 109 ~f~fvD~~tdl~~~~~~~kp~~~~l~~v~~~f~~~i~~~~~~~vlIldqpdlLLa~t 165 (280)
T 4a8j_C 109 NYNVLDFLSDFIVNNIHNKPRDKILSDVLAKFSAAIQNNPTDTIVIIEQPELLLSLV 165 (280)
T ss_dssp GEEEEESSTTHHHHHTTTCCHHHHHHHHHHHHHHHHHTSTTSEEEEEECGGGHHHHS
T ss_pred heeEEEecchhhhhcccCCcchhhhHHHHHHHhhhhhccCCCeEEEEcChHHHHHhc
Confidence 5667777 5566554 33333 334666766544 357899999999987643
No 151
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=31.44 E-value=1.2e+02 Score=24.96 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy5642 31 RDVFKRARQVSPSVIFFDELD 51 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid 51 (237)
+-++..+....|.+|++||--
T Consensus 262 ~l~~a~~l~~~p~~lllDEp~ 282 (339)
T 3qkt_A 262 RLAMSLYLAGEISLLILDEPT 282 (339)
T ss_dssp HHHHHHHTTTTTCEEEEECCC
T ss_pred HHHHHHHhcCCCCEEEEECCC
Confidence 444555555689999999953
No 152
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=30.68 E-value=91 Score=23.45 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=11.6
Q ss_pred hcCCeEEEEcccccc
Q psy5642 39 QVSPSVIFFDELDSL 53 (237)
Q Consensus 39 ~~~P~il~iDeid~l 53 (237)
...|.||+|||++.+
T Consensus 103 ~~~~dvlilDE~g~~ 117 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKM 117 (189)
T ss_dssp SSCCCCEEECCCSTT
T ss_pred ccCCCEEEEeCCCcc
Confidence 457899999997444
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=30.21 E-value=91 Score=23.68 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCC
Q psy5642 29 CVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNR 97 (237)
Q Consensus 29 ~l~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~ 97 (237)
.+..+-.......|.+|+||++..+.... .....+.+..+...+.. .++.||.++..
T Consensus 116 ~~~~i~~~~~~~~~~~vviD~~~~l~~~~--------~~~~~~~l~~l~~~~~~----~~~~vi~~~h~ 172 (247)
T 2dr3_A 116 FIEVLRQAIRDINAKRVVVDSVTTLYINK--------PAMARSIILQLKRVLAG----TGCTSIFVSQV 172 (247)
T ss_dssp HHHHHHHHHHHHTCCEEEEETSGGGTTTC--------GGGHHHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEECCchHhhcCC--------HHHHHHHHHHHHHHHHH----CCCeEEEEecC
Confidence 34444444455689999999999986311 11234555566655543 24455555544
No 154
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=30.10 E-value=1.3e+02 Score=20.69 Aligned_cols=19 Identities=16% Similarity=0.545 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy5642 31 RDVFKRARQVSPSVIFFDE 49 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDe 49 (237)
..++.......|.+|++|-
T Consensus 41 ~~a~~~l~~~~~dlii~D~ 59 (153)
T 3cz5_A 41 GEAYRLYRETTPDIVVMDL 59 (153)
T ss_dssp HHHHHHHHTTCCSEEEECS
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 4455566667799999975
No 155
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=29.95 E-value=39 Score=28.42 Aligned_cols=57 Identities=14% Similarity=0.256 Sum_probs=29.3
Q ss_pred HhcCCeEEEEccccccccccCCCCCCCC----CchHHHHHHHHHHHhcCCCCCCCEEEEEE
Q psy5642 38 RQVSPSVIFFDELDSLAGERGDGGGGGG----SNVQERVLAQMLTEMDGIVPLNNVTIVAA 94 (237)
Q Consensus 38 ~~~~P~il~iDeid~l~~~~~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~v~vI~t 94 (237)
....|.+|+||-+-.+.+...-.+..+. +....+.++.+|..|..+.+..++.||.|
T Consensus 108 ~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 4567999999999999854322111110 11334566666655444333345444444
No 156
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=29.66 E-value=19 Score=27.87 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=22.1
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccc
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRID 102 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 102 (237)
..|.+|++||--+- ....++..|..+ . .+..|| +|++++.++
T Consensus 121 ~~p~lllLDEPts~------------------~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 121 LNDAFVILDEAQNT------------------TPAQMKMFLTRL-G-FGSKMV-VTGDITQVD 162 (208)
T ss_dssp BCSEEEEECSGGGC------------------CHHHHHHHHTTB-C-TTCEEE-EEEC-----
T ss_pred cCCCEEEEeCCccc------------------cHHHHHHHHHHh-c-CCCEEE-EECCHHHHh
Confidence 47999999995332 123444445554 2 244566 888766544
No 157
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=28.94 E-value=1.6e+02 Score=22.89 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhc---CCCCCCCEEEEEEeCCCCcc
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMD---GIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~---~~~~~~~v~vI~ttn~~~~l 101 (237)
+-.+..|-...|.+|++||--+- -+ ......++..+. ... .+..||.+|.+++.+
T Consensus 135 Rv~lAraL~~~p~lllLDEPts~-----------LD---~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 135 RVSLARAVYSNADIYLFDDPLSA-----------VD---AHVGKHIFENVIGPKGML--KNKTRILVTHSMSYL 192 (237)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTT-----------SC---HHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTG
T ss_pred HHHHHHHHhcCCCEEEEeCcccc-----------cC---HHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHH
Confidence 34555666678999999994221 11 223344555553 322 245567777776644
No 158
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=28.65 E-value=92 Score=26.08 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=14.2
Q ss_pred HHHHHhcC-CeEEEEcccccc
Q psy5642 34 FKRARQVS-PSVIFFDELDSL 53 (237)
Q Consensus 34 f~~a~~~~-P~il~iDeid~l 53 (237)
+..+-... |.+|++||...-
T Consensus 297 ~a~~l~~~~~~~lllDEp~~~ 317 (371)
T 3auy_A 297 IANALIGNRVECIILDEPTVY 317 (371)
T ss_dssp HHHHHHSSCCSEEEEESTTTT
T ss_pred HHHHHhcCCCCeEEEeCCCCc
Confidence 33444567 999999998653
No 159
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=28.36 E-value=1.6e+02 Score=21.04 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=17.9
Q ss_pred cccChHHHHHHHHH----HHHHhcCCeEEEEccc
Q psy5642 21 KYVGESERCVRDVF----KRARQVSPSVIFFDEL 50 (237)
Q Consensus 21 ~~~g~~~~~l~~~f----~~a~~~~P~il~iDei 50 (237)
.+.|+-.+.+.-++ ..|-...|.++++||-
T Consensus 57 ~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEP 90 (148)
T 1f2t_B 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEP 90 (148)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESC
T ss_pred HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECC
Confidence 33444444444332 3455567999999994
No 160
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=27.15 E-value=21 Score=27.71 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.2
Q ss_pred CeEEEEccccccccc
Q psy5642 42 PSVIFFDELDSLAGE 56 (237)
Q Consensus 42 P~il~iDeid~l~~~ 56 (237)
-.+|+|||+|.+...
T Consensus 176 ~~~lViDEah~~~~~ 190 (245)
T 3dkp_A 176 VEWLVVDESDKLFED 190 (245)
T ss_dssp CCEEEESSHHHHHHH
T ss_pred CcEEEEeChHHhccc
Confidence 468999999998653
No 161
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=26.79 E-value=30 Score=28.43 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=9.7
Q ss_pred CCeEEEEcccccc
Q psy5642 41 SPSVIFFDELDSL 53 (237)
Q Consensus 41 ~P~il~iDeid~l 53 (237)
.+.+|+|||++..
T Consensus 214 ~~~lLiiDdig~~ 226 (308)
T 2qgz_A 214 NVPVLILDDIGAE 226 (308)
T ss_dssp TSSEEEEETCCC-
T ss_pred CCCEEEEcCCCCC
Confidence 3569999999654
No 162
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=26.31 E-value=1.5e+02 Score=19.80 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccCCCC
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGR 110 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gR 110 (237)
..++.......|.++++|--- +....... + .-.++..+... ...-+++++......+....++.. |-
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~~---~~~~~~~~---~--g~~~~~~l~~~----~~~~~ii~ls~~~~~~~~~~~~~~-g~ 103 (140)
T 2qr3_A 37 VSLSTVLREENPEVVLLDMNF---TSGINNGN---E--GLFWLHEIKRQ----YRDLPVVLFTAYADIDLAVRGIKE-GA 103 (140)
T ss_dssp HHHHHHHHHSCEEEEEEETTT---TC-----C---C--HHHHHHHHHHH----CTTCCEEEEEEGGGHHHHHHHHHT-TC
T ss_pred HHHHHHHHcCCCCEEEEeCCc---CCCCCCCc---c--HHHHHHHHHhh----CcCCCEEEEECCCCHHHHHHHHHc-Cc
Confidence 344555566779999998421 10000000 0 01233333322 222345555444443444455544 33
Q ss_pred cccEEEecCCCHHHHHHHHHHHHcCC
Q psy5642 111 LDRLIYVPLPDDLTRAAILKIRLARS 136 (237)
Q Consensus 111 f~~~i~~~~P~~~~R~~il~~~l~~~ 136 (237)
.+ .+. .+-+.++-...++..+...
T Consensus 104 ~~-~l~-kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 104 SD-FVV-KPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp CE-EEE-ESCCHHHHHHHHHHHHTCC
T ss_pred hh-eee-CCCCHHHHHHHHHHHHHhc
Confidence 33 222 2236666667777766543
No 163
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=26.15 E-value=1e+02 Score=19.42 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhccccCCccHHHHHHHHh
Q psy5642 186 IVAVCDEAALSALENNLEAAYVSHQDFLTALQ 217 (237)
Q Consensus 186 i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~ 217 (237)
+..++++|.......+ ...++.+|+..||+
T Consensus 40 ~~eI~qeA~kfmrHak--Rk~Lt~~DI~~Alk 69 (70)
T 1taf_B 40 LKRIVQDAAKFMNHAK--RQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHHHTT--CSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcC--CCeecHHHHHHHHc
Confidence 5566666665554444 45799999999985
No 164
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=26.10 E-value=91 Score=23.39 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.0
Q ss_pred CCeEEEEcccccccc
Q psy5642 41 SPSVIFFDELDSLAG 55 (237)
Q Consensus 41 ~P~il~iDeid~l~~ 55 (237)
.-.+|++||+|.+..
T Consensus 158 ~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 158 HIKHFILDECDKMLE 172 (220)
T ss_dssp TCCEEEEESHHHHHS
T ss_pred cCCEEEEcCHHHHhc
Confidence 346999999998854
No 165
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.03 E-value=33 Score=28.31 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=34.6
Q ss_pred HHHHHHHHHHh-cCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEe
Q psy5642 29 CVRDVFKRARQ-VSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAAT 95 (237)
Q Consensus 29 ~l~~~f~~a~~-~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 95 (237)
.+..+...... ..|.+|+||.+..+........ +........+..++..|..+....++.||.+.
T Consensus 190 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~--g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 190 IVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR--ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp HHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT--TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc--ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 34455555555 6799999999999875322110 00011122445555555544333455566653
No 166
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=25.57 E-value=98 Score=24.12 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=16.1
Q ss_pred HHHHHHHHh----cCCeEEEEcccccc
Q psy5642 31 RDVFKRARQ----VSPSVIFFDELDSL 53 (237)
Q Consensus 31 ~~~f~~a~~----~~P~il~iDeid~l 53 (237)
..+++.+.. ..|.+|+|||+..+
T Consensus 75 ~~i~~~i~~~~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 75 PEILNYIMSNSFNDETKVIGIDEVQFF 101 (223)
T ss_dssp HHHHHHHHSTTSCTTCCEEEECSGGGS
T ss_pred HHHHHHHHHHhhCCCCCEEEEecCccC
Confidence 345655554 24889999999765
No 167
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.24 E-value=59 Score=24.33 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=10.8
Q ss_pred CCeEEEEcccccc
Q psy5642 41 SPSVIFFDELDSL 53 (237)
Q Consensus 41 ~P~il~iDeid~l 53 (237)
.+.+|+|||+..+
T Consensus 76 ~~dvviIDE~Q~~ 88 (184)
T 2orw_A 76 DTRGVFIDEVQFF 88 (184)
T ss_dssp TEEEEEECCGGGS
T ss_pred CCCEEEEECcccC
Confidence 4679999999875
No 168
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=25.15 E-value=1.7e+02 Score=22.66 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD 99 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 99 (237)
+-.+..|-...|.+|++||--+- -+......+..++..+. ...+..||.+|++++
T Consensus 153 Rv~iAral~~~p~llllDEPts~-----------LD~~~~~~i~~~l~~l~---~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWA-----------LDSKTGEKIMQLLKKLN---EEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTT-----------SCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHH---HHcCCEEEEEcCCHH
Confidence 34555666678999999994221 12222333333444332 112445777887754
No 169
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=24.20 E-value=97 Score=24.95 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=13.5
Q ss_pred HHHHHHhcCCeEEEEccc
Q psy5642 33 VFKRARQVSPSVIFFDEL 50 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDei 50 (237)
.+..|-...|.+|++||-
T Consensus 171 ~lAraL~~~p~lLlLDEP 188 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEP 188 (279)
T ss_dssp HHHHHHHTCCSEEEEEST
T ss_pred HHHHHHhCCCCEEEEeCC
Confidence 444555678999999994
No 170
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=23.90 E-value=40 Score=27.09 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=25.8
Q ss_pred CCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCcc
Q psy5642 41 SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRI 101 (237)
Q Consensus 41 ~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 101 (237)
.|.+|++||--+ +-+......+..++..+. ..++..||.+|++.+.+
T Consensus 165 ~p~lLllDEPts-----------~LD~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~~~ 211 (266)
T 4g1u_C 165 TPRWLFLDEPTS-----------ALDLYHQQHTLRLLRQLT---RQEPLAVCCVLHDLNLA 211 (266)
T ss_dssp CCEEEEECCCCS-----------SCCHHHHHHHHHHHHHHH---HHSSEEEEEECSCHHHH
T ss_pred CCCEEEEeCccc-----------cCCHHHHHHHHHHHHHHH---HcCCCEEEEEEcCHHHH
Confidence 899999999321 112222333333444332 22456778888876543
No 171
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=23.89 E-value=1.7e+02 Score=19.54 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=11.4
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy5642 33 VFKRARQVSPSVIFFDE 49 (237)
Q Consensus 33 ~f~~a~~~~P~il~iDe 49 (237)
++.......|.++++|-
T Consensus 41 al~~~~~~~~dlvilD~ 57 (133)
T 3b2n_A 41 AMKLIEEYNPNVVILDI 57 (133)
T ss_dssp HHHHHHHHCCSEEEECS
T ss_pred HHHHHhhcCCCEEEEec
Confidence 44444556789999874
No 172
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=23.43 E-value=1.6e+02 Score=21.72 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHHHh--cCCeEEEEcccccc
Q psy5642 24 GESERCVRDVFKRARQ--VSPSVIFFDELDSL 53 (237)
Q Consensus 24 g~~~~~l~~~f~~a~~--~~P~il~iDeid~l 53 (237)
|.-.+.+.-++..|.. ..|.++++||.++-
T Consensus 67 gGekqr~ala~~la~~~~~~~~~llLDEp~a~ 98 (173)
T 3kta_B 67 GGEKALTALAFVFAIQKFKPAPFYLFDEIDAH 98 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEECCCccC
Confidence 3334444444444433 34569999998764
No 173
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=23.26 E-value=29 Score=25.98 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=12.1
Q ss_pred CCeEEEEcccccccc
Q psy5642 41 SPSVIFFDELDSLAG 55 (237)
Q Consensus 41 ~P~il~iDeid~l~~ 55 (237)
.-.+|++||+|.+..
T Consensus 146 ~~~~lViDEah~~~~ 160 (206)
T 1vec_A 146 HVQMIVLDEADKLLS 160 (206)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cCCEEEEEChHHhHh
Confidence 356999999999754
No 174
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=23.02 E-value=60 Score=25.83 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=13.7
Q ss_pred cCCeEEEEccccccccc
Q psy5642 40 VSPSVIFFDELDSLAGE 56 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~ 56 (237)
..|.+|+||++-.+...
T Consensus 132 ~~~~livlDe~~~~~~~ 148 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIE 148 (279)
T ss_dssp TTCSEEEEECGGGGCCS
T ss_pred CCCCEEEECCHHHhcCC
Confidence 36999999999987643
No 175
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=22.57 E-value=1.3e+02 Score=19.00 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhccccCCccHHHHHHHHhhc
Q psy5642 186 IVAVCDEAALSALENNLEAAYVSHQDFLTALQLV 219 (237)
Q Consensus 186 i~~~~~~a~~~~~~~~~~~~~v~~~df~~al~~~ 219 (237)
+..++.+|...+..++ ...|+.+|+..|++..
T Consensus 39 i~~la~eA~~~a~~~~--rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 39 LHRLAEEARTNAFENK--SKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHHHHHHHT--CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHH
Confidence 4455566666665554 5679999999998753
No 176
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=21.79 E-value=60 Score=22.06 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=16.1
Q ss_pred HHHHhcCCeEEEEccccccc
Q psy5642 35 KRARQVSPSVIFFDELDSLA 54 (237)
Q Consensus 35 ~~a~~~~P~il~iDeid~l~ 54 (237)
++++.++|.|+++|+=..+.
T Consensus 70 ~e~~~~~P~vV~vd~~N~i~ 89 (97)
T 1uhe_A 70 DEINAHKPSIVLVDEKNEIL 89 (97)
T ss_dssp HHHHHCCCEEEEECTTSCEE
T ss_pred HHHhcCCCEEEEECCCCCEE
Confidence 56788999999999965554
No 177
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=21.78 E-value=3.5e+02 Score=22.49 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=12.4
Q ss_pred HHhcCC--eEEEEccccc
Q psy5642 37 ARQVSP--SVIFFDELDS 52 (237)
Q Consensus 37 a~~~~P--~il~iDeid~ 52 (237)
+-...| .||+|||.++
T Consensus 309 ~l~~~~~~~~LlLDEpt~ 326 (415)
T 4aby_A 309 STVLGADTPSVVFDEVDA 326 (415)
T ss_dssp HHHHCCSSSEEEESSTTT
T ss_pred HHHhCCCCCEEEEECCCC
Confidence 444567 8999999866
No 178
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=21.61 E-value=37 Score=26.34 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=12.1
Q ss_pred CCeEEEEcccccccc
Q psy5642 41 SPSVIFFDELDSLAG 55 (237)
Q Consensus 41 ~P~il~iDeid~l~~ 55 (237)
.-..|++||+|.+..
T Consensus 176 ~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 176 RTTYLVLDEADRMLD 190 (242)
T ss_dssp TCCEEEETTHHHHHH
T ss_pred cccEEEEeCHHHHhh
Confidence 346999999998865
No 179
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=21.48 E-value=40 Score=25.71 Aligned_cols=51 Identities=18% Similarity=0.351 Sum_probs=27.5
Q ss_pred CeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCCccchhccC
Q psy5642 42 PSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLR 107 (237)
Q Consensus 42 P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r 107 (237)
-.+|++||+|.+.... + ...+..++..+.. +.-+++.|+.-+..+..-+.+
T Consensus 168 ~~~lViDEah~~~~~~----------~-~~~~~~i~~~~~~----~~~~l~~SAT~~~~~~~~~~~ 218 (228)
T 3iuy_A 168 ITYLVIDEADKMLDME----------F-EPQIRKILLDVRP----DRQTVMTSATWPDTVRQLALS 218 (228)
T ss_dssp CCEEEECCHHHHHHTT----------C-HHHHHHHHHHSCS----SCEEEEEESCCCHHHHHHHHT
T ss_pred ceEEEEECHHHHhccc----------h-HHHHHHHHHhCCc----CCeEEEEEeeCCHHHHHHHHH
Confidence 4699999999876431 0 2233444444422 333455555555555544444
No 180
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=20.62 E-value=52 Score=22.29 Aligned_cols=19 Identities=32% Similarity=0.700 Sum_probs=15.0
Q ss_pred HHHHhcCCeEEEEcccccc
Q psy5642 35 KRARQVSPSVIFFDELDSL 53 (237)
Q Consensus 35 ~~a~~~~P~il~iDeid~l 53 (237)
++++.++|.++++|+=..+
T Consensus 72 ~e~~~~~P~vV~vd~~N~i 90 (96)
T 1vc3_B 72 EEARNLKPTVVLVDERNRI 90 (96)
T ss_dssp HHHTTCCCEEEEECTTCCE
T ss_pred HHHhcCCCEEEEECCCCCE
Confidence 5678889999999985443
No 181
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.41 E-value=2.1e+02 Score=19.46 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCeEEEEccccccccccCCCCCCCCCchHHHHHHHHHHHhcCCCCCCCEEEEEEeCCCC--ccchhccCC
Q psy5642 31 RDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPD--RIDKALLRP 108 (237)
Q Consensus 31 ~~~f~~a~~~~P~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~--~ld~al~r~ 108 (237)
..++..+....|.+|++|-- ++. . + -..++..+.... ..+.||..|...+ ....++..
T Consensus 56 ~~al~~l~~~~~dlii~D~~---l~~----~----~------g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~- 115 (150)
T 4e7p_A 56 QEAIQLLEKESVDIAILDVE---MPV----K----T------GLEVLEWIRSEK--LETKVVVVTTFKRAGYFERAVKA- 115 (150)
T ss_dssp HHHHHHHTTSCCSEEEECSS---CSS----S----C------HHHHHHHHHHTT--CSCEEEEEESCCCHHHHHHHHHT-
T ss_pred HHHHHHhhccCCCEEEEeCC---CCC----C----c------HHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHC-
Confidence 34555566677889998841 111 0 0 123333433322 2333333333333 44444443
Q ss_pred CCcccEEEecCC-CHHHHHHHHHHHHcCC
Q psy5642 109 GRLDRLIYVPLP-DDLTRAAILKIRLARS 136 (237)
Q Consensus 109 gRf~~~i~~~~P-~~~~R~~il~~~l~~~ 136 (237)
| ++. ++..| +.++-...++..+...
T Consensus 116 g-~~~--~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 116 G-VDA--YVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp T-CSE--EEETTSCHHHHHHHHHHHHTTC
T ss_pred C-CcE--EEecCCCHHHHHHHHHHHHcCC
Confidence 3 332 33344 7777777787777654
No 182
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=20.11 E-value=77 Score=26.47 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=29.4
Q ss_pred cCCeEEEEccccccccccCCCCCCCCCchH--HHHHHHHHHHhcCCCCCCCEEEEEEeCCCCc
Q psy5642 40 VSPSVIFFDELDSLAGERGDGGGGGGSNVQ--ERVLAQMLTEMDGIVPLNNVTIVAATNRPDR 100 (237)
Q Consensus 40 ~~P~il~iDeid~l~~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 100 (237)
..|.+|+||++-.++....... .... ...+..++..|..+....++.||.++.....
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~----~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~ 288 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGR----GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAR 288 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCST----TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred CCCCEEEEeCchHhhhhhhccc----ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccc
Confidence 5799999999988763321110 0111 1224444444444333345667777665443
Done!