RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5642
(237 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 193 bits (491), Expect = 3e-62
Identities = 68/201 (33%), Positives = 102/201 (50%), Gaps = 30/201 (14%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74
G + +VG VRD+F+ A++ +P ++F DE+D++ +RG G GGG ++ +E+ L
Sbjct: 75 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG-NDEREQTLN 133
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+L EMDG + ++AATNRPD +D ALLRPGR DR I + PD R IL+I
Sbjct: 134 QLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 193
Query: 135 RSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAA 194
PL EDV + L + T G+ GA+ + + +EAA
Sbjct: 194 GKPLAEDVDLALLAKRTPGFVGAD---------------------------LENLLNEAA 226
Query: 195 LSALENNLEAAYVSHQDFLTA 215
L A ++ +D A
Sbjct: 227 LLAAREGRRK--ITMKDLEEA 245
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 192 bits (489), Expect = 6e-62
Identities = 74/205 (36%), Positives = 106/205 (51%), Gaps = 30/205 (14%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74
G + +VG VRD+F++A++ +P +IF DE+D++ +RG G GGG + +E+ L
Sbjct: 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG-HDEREQTLN 136
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
QML EMDG + ++AATNRPD +D ALLRPGR DR + V LPD R ILK+ +
Sbjct: 137 QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 196
Query: 135 RSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAA 194
R PL D+ + R T G+SGA+ + + +EAA
Sbjct: 197 RVPLAPDIDAAIIARGTPGFSGAD---------------------------LANLVNEAA 229
Query: 195 LSALENNLEAAYVSHQDFLTALQLV 219
L A N VS +F A +
Sbjct: 230 LFAARGNKRV--VSMVEFEKAKDKI 252
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 142 bits (358), Expect = 3e-42
Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 28/200 (14%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74
GPEL + GESE VR++F +ARQ +P V+FFDELDS+A RG G GG +RV+
Sbjct: 74 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG-AADRVIN 132
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LTEMDG+ NV I+ ATNRPD ID A+LRPGRLD+LIY+PLPD+ +R AILK L
Sbjct: 133 QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 192
Query: 135 RSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAA 194
+SP+ +DV +E L ++T G+SGA+ + +C A
Sbjct: 193 KSPVAKDVDLEFLAKMTNGFSGAD---------------------------LTEICQRAC 225
Query: 195 LSALENNLEAAYVSHQDFLT 214
A+ ++E+ ++ T
Sbjct: 226 KLAIRESIESEIRRERERQT 245
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 122 bits (308), Expect = 3e-34
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 8/124 (6%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74
E Y + V D+ + Q VI D L ++ G G GG R
Sbjct: 158 FGEPLSGYNTDFNVFVDDIARAMLQ--HRVIVIDSLKNVIGAAGGNTTSGGI---SRGAF 212
Query: 75 QMLTEMDGIVPLNNVTIVAATNR---PDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKI 131
+L+++ + ++A+ N D+I + + R + V D +L
Sbjct: 213 DLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTR 272
Query: 132 RLAR 135
Sbjct: 273 TGEG 276
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 95.9 bits (237), Expect = 2e-24
Identities = 71/218 (32%), Positives = 107/218 (49%), Gaps = 46/218 (21%)
Query: 15 GPELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74
GPE+ K GESE +R F+ A + +P++IF DELD++A +R G V+ R+++
Sbjct: 71 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE----VERRIVS 126
Query: 75 QMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIRLA 134
Q+LT MDG+ +V ++AATNRP+ ID AL R GR DR + + +PD R IL+I
Sbjct: 127 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 186
Query: 135 RSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAVCDEAA 194
L +DV +E++ T G+ GA+ + A+C EAA
Sbjct: 187 NMKLADDVDLEQVANETHGHVGAD---------------------------LAALCSEAA 219
Query: 195 LSALENNLEAAY---------------VSHQDFLTALQ 217
L A+ ++ V+ DF AL
Sbjct: 220 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 257
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 74.2 bits (181), Expect = 2e-16
Identities = 24/225 (10%), Positives = 53/225 (23%), Gaps = 41/225 (18%)
Query: 17 ELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQER-VLAQ 75
+ + + +DV K S + G G A
Sbjct: 70 QQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTAT 129
Query: 76 ML------TEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAIL 129
ML T+M + + + R + + R + +
Sbjct: 130 MLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLE 189
Query: 130 KIRLARSPLGEDVCVEELVRLTEGYSGAEQSLSKHRAKKIRPRRESNPGPPACKPSIVAV 189
L ++ L D+ + + YS E ++
Sbjct: 190 T--LHKTGLFSDIRL-YNREGVKLYSSLE---------------------------TPSI 219
Query: 190 CDEAALSALENNLEAAYVSHQDFLTALQLVKPRTPPQLIKLYENY 234
+ L N VS ++ L+ ++ + + +
Sbjct: 220 SPKETLEKELNR----KVSGKEIQPTLERIEQKMVLNKHQETPEF 260
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 70.9 bits (173), Expect = 6e-15
Identities = 21/158 (13%), Positives = 39/158 (24%), Gaps = 24/158 (15%)
Query: 9 EVVESIGPELFRKY-VGESERCVRDVFKRARQVS------PSVIFFDELDSLAGERGDGG 61
+ + P + +G + VF+ + PS + LD+L DG
Sbjct: 181 KALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYL-DGS 239
Query: 62 GGGGSNVQERVLAQMLTEMDGIVPLNNVTIVAATNRPDRIDKALLRPGRLDRLIYVPLPD 121
+ + + N R + I D
Sbjct: 240 VKVNLEKKHLNKRTQIFPP----------GIVTMN---EYSVPKTLQARFVKQIDFRPKD 286
Query: 122 DLTRAA-ILKIRLARSPLGEDVCVEELVRLTEGYSGAE 158
L + L + + + L+ L AE
Sbjct: 287 YLKHCLERSEFLLEKRIIQSG--IALLLMLIWYRPVAE 322
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 68.4 bits (166), Expect = 1e-14
Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 15 GPELFRKYVGESE-RCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVL 73
P+ + ++ + ++ +F A + S + D+++ L G VL
Sbjct: 73 SPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-----PRFSNLVL 127
Query: 74 AQMLTEMDGIVPLNNVTI-VAATNRPDRIDKALLRPGRLDRLIYVPLPDDLTRAAILKIR 132
+L + P + + T+R D + + + I+VP T +L+
Sbjct: 128 QALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIA--TGEQLLEA- 183
Query: 133 LARSPLGEDVCVEELVRLTEGYSG 156
L +D + + +G
Sbjct: 184 LELLGNFKDKERTTIAQQVKGKKV 207
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 46.8 bits (110), Expect = 7e-07
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 22/132 (16%)
Query: 21 KYVGESERCVRDVFKRARQV-----SPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQ 75
E + +RD+ A ++F DE+D + + G E V
Sbjct: 90 YVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSR---EGVQRD 146
Query: 76 MLTEMDG--------IVPLNNVTIVAA----TNRPDRIDKALLRPGRLDRLIYVPLPDDL 123
+L ++G +V +++ +A+ RP + L GRL + +
Sbjct: 147 LLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQ--GRLPIRVELTALSAA 204
Query: 124 TRAAILKIRLAR 135
IL A
Sbjct: 205 DFERILTEPHAS 216
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
562]}
Length = 195
Score = 27.2 bits (60), Expect = 1.3
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 21 KYVGESERCVRDVFKRARQVSPSVI-FFDELDSLAGERGDGGGGGGSNVQERVLAQMLTE 79
KY GE E ++ V + +VI F DEL ++ G G G+ +L L
Sbjct: 94 KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG----AGKADGAMDAGNMLKPALAR 149
Query: 80 MDGIVPLNNVTIVAATNRPD-----RIDKALLRPGRLDRLIYVPLPDDLTRAAILK 130
+ V AT + D AL R R + ++V P AIL+
Sbjct: 150 -------GELHCVGATTLDEYRQYIEKDAALER--RFQK-VFVAEPSVEDTIAILR 195
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.9 bits (59), Expect = 2.0
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 26 SERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLA 74
ER + + + ++F DEL ++ G G N+ + LA
Sbjct: 100 EERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA 148
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 26.4 bits (58), Expect = 2.6
Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 22/112 (19%)
Query: 17 ELFRKYVGESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQM 76
ELF G V +F DE+ L+ E Q ++L +
Sbjct: 70 ELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLE-----------AQAKLLRVI 118
Query: 77 LTEMDGIVPLN-------NVTIVAATNRP--DRIDKALLRPGRLDRLIYVPL 119
E L NV I+AATNR + + + R RL + +
Sbjct: 119 --ESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEI 168
>d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492
{Silicibacter sp. tm1040 [TaxId: 292414]}
Length = 261
Score = 26.5 bits (57), Expect = 2.8
Identities = 10/76 (13%), Positives = 17/76 (22%), Gaps = 10/76 (13%)
Query: 24 GESERCVRDVFKRARQVSPSVIFFDELDSLAGERGDGGGGGGSNVQERVLAQMLTEMDGI 83
GE +R D+F +F G LA
Sbjct: 45 GEGDRHKFDLFLPEGTPVGLFVFV----------HGGYWMAFDKSSWSHLAVGALSKGWA 94
Query: 84 VPLNNVTIVAATNRPD 99
V + + + +
Sbjct: 95 VAMPSYELCPEVRISE 110
>d1wd3a2 b.42.8.1 (A:338-499) Alpha-L-arabinofuranosidase B (AbfB),
C-terminal domain {Aspergillus kawachii [TaxId: 40384]}
Length = 162
Score = 25.2 bits (55), Expect = 5.2
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 195 LSALENNLEAAYVSHQDFLTALQLVKPRTPPQL 227
L Y++H D Q+V + L
Sbjct: 15 LRVTTPGYTTRYIAHTDTTVNTQVVDDDSSTTL 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.391
Gapped
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 877,360
Number of extensions: 40913
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 16
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)