BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5645
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 44/55 (80%)
Query: 37 LGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNI 91
LG+RR G RKALHDP ALVLY PP +SAHDL+K DK+K+ VHVVVDPVLS +
Sbjct: 1 LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKV 55
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 335 FDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLGK-RP 391
DE+ +C +C +S+ N ++FCD CN+ VHQ CYG+ IP G WLCR C+ + RP
Sbjct: 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 335 FDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLGK-RP 391
DE+ +C +C +S+ N ++FCD CN+ VHQ CYG+ IP G WLCR C+ + RP
Sbjct: 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 70
>pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger
Length = 87
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 440 SIPQSRWALICILCRER-LGACIQCSVKTCKTAYHVTCAFKHGLEMRAIIEDENAEDG-- 496
+IP +RW L C LC+++ +GA IQC C TA+HVTCA K GL M+ E G
Sbjct: 10 NIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTT 69
Query: 497 --VKLRSYCQKHS 507
V+ +YC H+
Sbjct: 70 FSVRKTAYCDVHT 82
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 340 ICDVCRSPDSEEGNEMVFCDCCNICVHQACY----GITTIPSG-SWLCRTCVL 387
+C +C+ SE NEMV CD C HQ C+ + I S WLCR CV
Sbjct: 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 334 EFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACY--GITTIPSGSWLCRTCVLGK 389
+F ++ IC VC D E ++++FCD C+ H C + IP G W C C+L +
Sbjct: 12 QFIDSYICQVCSRGD--EDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQACYG--ITTIPSGSWLCRTCV 386
C VCR +G E++ CD C H AC + IPSG+W C +C+
Sbjct: 11 CAVCR-----DGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL 53
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQACY--GITTIPSGSWLCRTCVLGKRPE 392
C VC++ G E++ C+ C H +C+ +T PSG W+C C +PE
Sbjct: 7 CAVCQN-----GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPE 55
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQACYG--ITTIPSGSWLCRTCV 386
C VCR +G E++ CD C H AC + IPSG+W C +C+
Sbjct: 8 CAVCR-----DGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL 50
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 339 VICDVCRSPDSEEGNEMVFCDCCNICVHQACY--GITTIPSGSWLCRTC 385
IC VC+ P ++V C+ C C H C+ + +P W C C
Sbjct: 3 TICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 324 IIKEEEGLGLEFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIP--SGSWL 381
+I++E G ++ IC C PD +G+ M+ CD C+ H C GI P W
Sbjct: 9 VIRDEWG-----NQIWICPGCNKPD--DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWF 61
Query: 382 CRTCV 386
C C
Sbjct: 62 CPKCA 66
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 337 ENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYG--ITTIPSGSWLCRTC 385
E C CR + + M+FCD C+ H C +T +P G W+C+ C
Sbjct: 60 ECKTCSSCRD-QGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 337 ENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYG--ITTIPSGSWLCRTC 385
E C CR + + M+FCD C+ H C +T +P G W+C+ C
Sbjct: 58 ECKTCSSCRD-QGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 336 DENVICDVCRSPDSEEGNEMVFCDCCNICVHQACY--GITTIPSGSWLCRTC 385
D IC VC+ P ++V C+ C C H C+ + +P W C C
Sbjct: 23 DSATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQACY--GITTIPSGSWLCRTCVLGKRPE 392
C VC++ G +++ C+ C H C+ + + PSG W+C C +PE
Sbjct: 10 CAVCQN-----GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPE 58
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 353 NEMVFCD---CCNICVHQACYGITTIPSGSWLCRTC 385
EM+ CD C H AC G+TT P G W C C
Sbjct: 47 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 82
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 353 NEMVFCD---CCNICVHQACYGITTIPSGSWLCRTC 385
EM+ CD C H AC G+TT P G W C C
Sbjct: 21 GEMIGCDDPDCSIEWFHFACVGLTTKPRGKWFCPRC 56
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 353 NEMVFCD---CCNICVHQACYGITTIPSGSWLCRTC 385
EM+ CD C H AC G+TT P G W C C
Sbjct: 21 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 56
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 353 NEMVFCD---CCNICVHQACYGITTIPSGSWLCRTC 385
EM+ CD C H AC G+TT P G W C C
Sbjct: 27 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 62
>pdb|1WEV|A Chain A, Solution Structure Of Phd Domain In Protein Np_082203
Length = 88
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTI------PSGSWLCRTC 385
C VCR GN++V C C+ HQ C+ P W C C
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARC 69
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 340 ICDVCRSPDSEEGNEMVFCDCCNICVHQACYG--ITTIPSGSWLCRTC 385
C VCR + +++ CD C+ H C + TIP G W+C C
Sbjct: 7 FCSVCR-----KSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 353 NEMVFCD---CCNICVHQACYGITTIPSGSWLCRTC 385
EM+ CD C H AC G+TT P G W C C
Sbjct: 21 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 56
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQACY--GITTIPSGSWLCRTC 385
C VCR E ++++ CD CN H C + +P G W C C
Sbjct: 3 CKVCRK--KGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 334 EFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACY--GITTIPSGSWLCRTC 385
E D C+VC+ +G E++ CD C H C + P G W C C
Sbjct: 7 ETDHQDYCEVCQ-----QGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
>pdb|3PKM|A Chain A, Crystal Structure Of Cas6 With Its Substrate Rna
pdb|3PKM|X Chain X, Crystal Structure Of Cas6 With Its Substrate Rna
Length = 269
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 261 GPQVTVVSTLNSTRYPNNYNEPFKLGNNKHLFPIPPGLPAIQEDRLEKMIAELEVRCWDK 320
GP++ S + + + P+ LG K F +P I E + ++ EVR WD+
Sbjct: 55 GPKLFTYSLFMAEKREHPKGLPYFLGYKKGFFYFSTCVPEIAEALVNGLLMNPEVRLWDE 114
>pdb|3I4H|X Chain X, Crystal Structure Of Cas6 In Pyrococcus Furiosus
Length = 273
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 261 GPQVTVVSTLNSTRYPNNYNEPFKLGNNKHLFPIPPGLPAIQEDRLEKMIAELEVRCWDK 320
GP++ S + + + P+ LG K F +P I E + ++ EVR WD+
Sbjct: 59 GPKLFTYSLFMAEKREHPKGLPYFLGYKKGFFYFSTCVPEIAEALVNGLLMNPEVRLWDE 118
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
Length = 55
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 353 NEMVFCD---CCNICVHQACYGITTIPSGSWLCRTC 385
EM+ CD C H AC G+TT P G W C C
Sbjct: 16 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 51
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 340 ICDVCRSPDSEEGNEMVFCDCCNICVHQACYG--ITTIPSGSWLCRTC 385
C VCR + +++ CD C+ H C + TIP G W+C C
Sbjct: 11 FCSVCR-----KSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family
Protein
Length = 72
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 344 CRSPDSEEGNEMVFCDCCNICVHQACYGIT---TIPSGSWLCRTCV 386
C + D ++G M+ CD C + H C GI +PS +LC C+
Sbjct: 21 CGTKD-DDGERMLACDGCGVWHHTRCIGINNADALPS-KFLCFRCI 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,469,286
Number of Sequences: 62578
Number of extensions: 693056
Number of successful extensions: 1505
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1476
Number of HSP's gapped (non-prelim): 46
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)