Query psy5645
Match_columns 525
No_of_seqs 425 out of 1536
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 23:01:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0954|consensus 100.0 1.9E-83 4.1E-88 690.3 12.2 326 182-511 82-441 (893)
2 COG5141 PHD zinc finger-contai 100.0 8.3E-49 1.8E-53 407.9 3.4 230 280-510 130-366 (669)
3 KOG0955|consensus 100.0 6.3E-47 1.4E-51 430.3 10.8 300 200-509 47-396 (1051)
4 KOG0956|consensus 100.0 1E-40 2.3E-45 357.8 4.9 172 340-516 7-190 (900)
5 KOG0957|consensus 100.0 1.6E-30 3.4E-35 272.0 0.7 167 339-510 120-302 (707)
6 PF13832 zf-HC5HC2H_2: PHD-zin 99.9 1.3E-25 2.9E-30 197.4 7.4 109 392-506 2-110 (110)
7 KOG0954|consensus 99.7 1.3E-18 2.8E-23 189.8 3.9 160 17-180 27-246 (893)
8 PF13771 zf-HC5HC2H: PHD-like 99.7 1.3E-17 2.8E-22 141.4 3.3 88 414-507 1-90 (90)
9 PF08658 Rad54_N: Rad54 N term 99.2 2.5E-12 5.4E-17 124.3 1.6 58 6-63 75-138 (196)
10 KOG1080|consensus 99.2 1.4E-11 3E-16 142.4 6.8 143 337-486 572-716 (1005)
11 PF13831 PHD_2: PHD-finger; PD 99.1 2.2E-11 4.9E-16 87.4 0.5 35 352-386 1-36 (36)
12 PF10513 EPL1: Enhancer of pol 99.0 2.7E-10 5.9E-15 106.7 6.3 110 202-316 3-160 (160)
13 PF10513 EPL1: Enhancer of pol 98.4 2E-07 4.4E-12 87.3 4.6 37 140-176 117-153 (160)
14 PF00628 PHD: PHD-finger; Int 98.2 6.3E-07 1.4E-11 68.3 2.3 46 340-387 1-50 (51)
15 smart00249 PHD PHD zinc finger 98.1 3E-06 6.4E-11 62.0 3.0 44 340-385 1-47 (47)
16 KOG1512|consensus 98.1 1.5E-06 3.2E-11 87.8 1.6 51 335-387 311-362 (381)
17 KOG1244|consensus 97.9 3.9E-06 8.6E-11 84.3 2.2 51 335-387 278-330 (336)
18 KOG4323|consensus 97.8 2.5E-05 5.4E-10 84.4 5.2 143 337-513 82-228 (464)
19 KOG4323|consensus 97.5 2.8E-05 6.2E-10 84.0 1.3 51 339-389 169-225 (464)
20 PF15446 zf-PHD-like: PHD/FYVE 97.2 0.0002 4.4E-09 67.8 2.8 63 340-402 1-83 (175)
21 KOG4299|consensus 97.1 0.00017 3.7E-09 79.8 0.9 49 338-388 253-305 (613)
22 KOG0825|consensus 97.0 0.00027 5.9E-09 79.6 1.7 51 336-388 213-266 (1134)
23 KOG0390|consensus 96.8 0.00067 1.5E-08 77.8 2.7 92 8-103 96-246 (776)
24 KOG1084|consensus 96.7 0.00069 1.5E-08 72.4 2.1 126 365-507 193-321 (375)
25 COG5034 TNG2 Chromatin remodel 96.3 0.002 4.3E-08 64.8 2.2 52 332-387 215-269 (271)
26 KOG1973|consensus 96.2 0.0025 5.4E-08 65.4 2.4 51 334-388 215-268 (274)
27 PF14446 Prok-RING_1: Prokaryo 93.6 0.046 1E-06 42.9 2.0 34 337-371 4-37 (54)
28 KOG0383|consensus 93.3 0.032 6.9E-07 63.8 1.1 48 335-387 44-93 (696)
29 smart00249 PHD PHD zinc finger 92.7 0.063 1.4E-06 38.7 1.6 31 449-481 1-33 (47)
30 KOG4443|consensus 92.7 0.059 1.3E-06 60.6 1.9 54 332-387 62-117 (694)
31 KOG1245|consensus 92.6 0.027 5.9E-07 69.0 -0.8 61 338-400 1108-1172(1404)
32 PF00628 PHD: PHD-finger; Int 91.8 0.15 3.2E-06 38.5 2.7 30 449-480 1-32 (51)
33 cd04718 BAH_plant_2 BAH, or Br 91.0 0.11 2.4E-06 48.8 1.5 25 364-388 1-27 (148)
34 KOG1473|consensus 90.4 0.49 1.1E-05 56.3 6.2 111 333-479 341-459 (1414)
35 KOG1244|consensus 89.4 0.17 3.7E-06 51.7 1.3 77 338-419 224-312 (336)
36 PF02318 FYVE_2: FYVE-type zin 85.9 1.1 2.4E-05 40.3 4.3 51 337-388 53-103 (118)
37 KOG1512|consensus 85.7 0.4 8.6E-06 49.4 1.5 58 337-399 257-323 (381)
38 KOG1044|consensus 83.2 0.55 1.2E-05 52.5 1.4 89 380-479 114-221 (670)
39 KOG1973|consensus 81.7 0.77 1.7E-05 47.3 1.7 33 448-483 220-253 (274)
40 PF00130 C1_1: Phorbol esters/ 80.1 1.7 3.7E-05 33.0 2.8 37 336-372 9-45 (53)
41 PF10367 Vps39_2: Vacuolar sor 79.4 3.9 8.4E-05 35.0 5.1 39 330-371 70-108 (109)
42 KOG0957|consensus 74.4 1.2 2.5E-05 49.2 0.5 47 338-386 544-596 (707)
43 PF07649 C1_3: C1-like domain; 73.8 1.5 3.3E-05 29.9 0.8 28 340-369 2-29 (30)
44 cd00029 C1 Protein kinase C co 73.7 2.1 4.5E-05 31.7 1.6 35 338-372 11-45 (50)
45 PF13901 DUF4206: Domain of un 73.6 2.6 5.6E-05 41.5 2.7 43 338-387 152-197 (202)
46 PF07227 DUF1423: Protein of u 71.9 2.7 5.8E-05 46.0 2.5 48 340-388 130-192 (446)
47 KOG0383|consensus 71.7 2.5 5.3E-05 48.9 2.3 77 360-482 1-79 (696)
48 PF11793 FANCL_C: FANCL C-term 69.7 2.2 4.9E-05 35.0 1.0 33 339-371 3-38 (70)
49 PF14569 zf-UDP: Zinc-binding 69.2 1 2.2E-05 38.0 -1.0 49 338-387 9-59 (80)
50 COG5194 APC11 Component of SCF 68.7 1.3 2.8E-05 37.7 -0.6 32 448-479 21-65 (88)
51 smart00109 C1 Protein kinase C 65.7 2.6 5.6E-05 30.8 0.6 34 337-371 10-43 (49)
52 PF03107 C1_2: C1 domain; Int 65.1 6.1 0.00013 27.1 2.3 27 340-369 2-29 (30)
53 KOG4443|consensus 64.2 3.5 7.7E-05 46.9 1.6 56 339-399 19-77 (694)
54 PF08746 zf-RING-like: RING-li 63.8 3.9 8.4E-05 30.5 1.2 30 450-479 1-30 (43)
55 PF03107 C1_2: C1 domain; Int 57.6 9.6 0.00021 26.1 2.2 27 449-477 2-30 (30)
56 PF14446 Prok-RING_1: Prokaryo 56.9 7.5 0.00016 30.7 1.8 36 448-485 6-44 (54)
57 KOG4299|consensus 56.1 3.8 8.3E-05 46.4 0.1 29 449-480 255-286 (613)
58 PF07649 C1_3: C1-like domain; 55.7 6.1 0.00013 26.9 1.0 27 449-477 2-30 (30)
59 PF05502 Dynactin_p62: Dynacti 54.9 12 0.00027 41.6 3.8 51 353-406 3-65 (483)
60 COG1579 Zn-ribbon protein, pos 54.2 9.3 0.0002 38.9 2.4 57 309-365 168-231 (239)
61 COG5034 TNG2 Chromatin remodel 53.5 6.8 0.00015 40.0 1.4 30 447-477 221-252 (271)
62 PLN02400 cellulose synthase 52.6 11 0.00024 45.6 3.1 51 337-388 35-87 (1085)
63 PF11793 FANCL_C: FANCL C-term 51.6 8.4 0.00018 31.6 1.4 32 448-479 3-39 (70)
64 PLN02436 cellulose synthase A 51.3 10 0.00022 45.9 2.5 50 338-388 36-87 (1094)
65 PLN02638 cellulose synthase A 50.9 9.8 0.00021 46.0 2.3 50 338-388 17-68 (1079)
66 PF07227 DUF1423: Protein of u 50.5 15 0.00032 40.5 3.4 14 411-424 154-167 (446)
67 TIGR02909 spore_YkwD uncharact 49.1 16 0.00034 32.8 2.9 26 146-171 2-27 (127)
68 PF10367 Vps39_2: Vacuolar sor 49.0 8.9 0.00019 32.8 1.2 31 448-479 79-109 (109)
69 PLN02189 cellulose synthase 48.4 12 0.00027 45.1 2.6 51 337-388 33-85 (1040)
70 PHA02862 5L protein; Provision 47.4 6.4 0.00014 37.1 0.1 32 339-371 3-34 (156)
71 smart00744 RINGv The RING-vari 47.0 6.4 0.00014 30.1 0.0 31 340-371 1-34 (49)
72 PF10621 FpoO: F420H2 dehydrog 46.9 4.4 9.5E-05 36.4 -1.0 46 357-403 3-73 (119)
73 PLN02195 cellulose synthase A 46.5 13 0.00029 44.5 2.4 49 339-388 7-57 (977)
74 PLN02915 cellulose synthase A 43.7 15 0.00033 44.3 2.4 50 338-388 15-66 (1044)
75 KOG2807|consensus 40.9 18 0.00039 38.3 2.2 83 374-478 271-361 (378)
76 PF13832 zf-HC5HC2H_2: PHD-zin 40.9 16 0.00035 31.8 1.6 30 338-371 55-86 (110)
77 KOG0955|consensus 39.4 18 0.00039 43.9 2.1 37 140-176 157-193 (1051)
78 PF13639 zf-RING_2: Ring finge 39.3 11 0.00024 27.5 0.2 30 340-371 2-31 (44)
79 PF12906 RINGv: RING-variant d 38.9 6 0.00013 30.0 -1.2 30 341-371 1-33 (47)
80 PF12861 zf-Apc11: Anaphase-pr 38.7 17 0.00038 31.3 1.4 49 337-387 20-79 (85)
81 PF00641 zf-RanBP: Zn-finger i 37.6 12 0.00025 25.5 0.1 22 377-398 2-26 (30)
82 COG5141 PHD zinc finger-contai 36.9 19 0.00041 40.1 1.6 18 141-158 131-148 (669)
83 PF12861 zf-Apc11: Anaphase-pr 36.4 12 0.00026 32.3 0.0 31 449-479 23-63 (85)
84 KOG1084|consensus 36.2 7 0.00015 42.2 -1.7 141 355-512 98-254 (375)
85 KOG2041|consensus 36.0 30 0.00065 40.4 3.1 61 338-402 1117-1186(1189)
86 PF02591 DUF164: Putative zinc 34.7 27 0.00059 27.1 1.8 35 329-363 13-54 (56)
87 KOG1246|consensus 34.6 29 0.00063 41.6 2.9 52 334-388 151-204 (904)
88 PF11781 RRN7: RNA polymerase 34.3 24 0.00053 25.4 1.3 26 339-364 9-34 (36)
89 smart00547 ZnF_RBZ Zinc finger 33.9 25 0.00053 22.8 1.2 21 378-398 1-24 (26)
90 KOG1844|consensus 32.1 31 0.00066 38.1 2.4 48 339-388 87-135 (508)
91 PF10080 DUF2318: Predicted me 31.6 24 0.00052 31.3 1.2 33 339-371 36-68 (102)
92 COG2097 RPL31A Ribosomal prote 29.4 21 0.00045 31.0 0.4 20 81-106 46-65 (89)
93 KOG0825|consensus 29.1 27 0.00058 41.0 1.3 31 447-479 215-248 (1134)
94 PF00130 C1_1: Phorbol esters/ 29.1 48 0.001 24.9 2.3 32 448-481 12-47 (53)
95 KOG4628|consensus 27.0 48 0.001 35.6 2.7 47 339-388 230-276 (348)
96 KOG3799|consensus 26.1 50 0.0011 31.0 2.2 51 336-387 63-115 (169)
97 PHA02825 LAP/PHD finger-like p 25.4 27 0.00058 33.5 0.4 50 337-387 7-56 (162)
98 KOG2930|consensus 24.4 8.8 0.00019 34.2 -2.8 31 449-479 48-92 (114)
99 PF06937 EURL: EURL protein; 23.9 38 0.00083 35.0 1.2 28 332-361 9-36 (285)
100 KOG3053|consensus 23.6 20 0.00043 36.9 -0.9 55 334-388 16-80 (293)
101 PF13771 zf-HC5HC2H: PHD-like 23.4 62 0.0013 26.9 2.2 30 339-372 37-68 (90)
102 KOG0782|consensus 23.3 18 0.00038 41.0 -1.4 19 354-372 198-216 (1004)
103 KOG0695|consensus 23.2 29 0.00064 37.3 0.2 57 316-373 120-176 (593)
104 KOG2114|consensus 22.2 66 0.0014 38.2 2.8 40 339-387 841-880 (933)
105 PF07282 OrfB_Zn_ribbon: Putat 21.3 92 0.002 24.8 2.7 35 337-371 27-62 (69)
106 cd05379 SCP_bacterial SCP_bact 21.3 68 0.0015 27.2 2.1 19 153-171 5-23 (122)
107 PF08195 TRI9: TRI9 protein; 20.6 46 0.00099 24.5 0.7 14 142-156 10-23 (43)
108 PF08792 A2L_zn_ribbon: A2L zi 20.4 80 0.0017 22.4 1.9 28 338-365 3-31 (33)
No 1
>KOG0954|consensus
Probab=100.00 E-value=1.9e-83 Score=690.33 Aligned_cols=326 Identities=58% Similarity=1.068 Sum_probs=300.6
Q ss_pred cccccCCCCCCccccccccccccCCCCCccccccchhhhhccCCCCCCCCCCCeEEechhhhHhhhcCccccCCCCCCCC
Q psy5645 182 SVHSSRGGSSYSDLKSMNSIYNRNTNEAPAELFRKDLISAMKLPDSEPLKSDEFWVISDQWKQEWERGVQVPVNPDSLPG 261 (525)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pae~~r~d~isa~k~~ds~~~~~~~~~~~~d~wkqew~~gvqvp~~p~~~p~ 261 (525)
|.+..+...+.++ |.+++|++|...++|+|+||+|||+|||++||+++.+++|++++|+|||||++|||||++|++||+
T Consensus 82 sis~t~~~~~~~~-kK~~s~~h~~adkkpkel~Rqdli~amkl~dse~~~p~~y~~~~D~wk~ewekgvQvpaspd~lpq 160 (893)
T KOG0954|consen 82 SISLTWLLKSSSN-KKRSSISHRGADKKPKELYRQDLISAMKLPDSEHLNPDEYLDFADPWKQEWEKGVQVPASPDTLPQ 160 (893)
T ss_pred chhhhhcccchhh-hhhhhccccccccchHHHHHhhhhhhccCccccccCccceeecCCccchhhhccccccCCCCcCCC
Confidence 3444455554454 449999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEccCCC--CCCC--CCCCc-----------------------cccCCCCcc-ccC------CCCCCCCCCCHHHHH
Q psy5645 262 PQVTVVSTLN--STRY--PNNYN-----------------------EPFKLGNNK-HLF------PIPPGLPAIQEDRLE 307 (525)
Q Consensus 262 ~~~~~~~~~~--~~~~--p~~~~-----------------------~~y~~~~~~-~~~------~~~~~~~~~~~~~~e 307 (525)
|+|++++..- ..+| |++|. -+|++|.+| .|+ ...+|.+++++.+||
T Consensus 161 p~v~~dse~v~~~~~fs~pkkyivc~~~~~~e~~yn~~~~~lae~tcrydid~~d~awL~~~n~e~~~~G~~~l~~~~~e 240 (893)
T KOG0954|consen 161 PSVRVDSEDVQPETDFSRPKKYIVCSDGEVPELGYNLLIKDLAESTCRYDIDDMDPAWLQLVNEERAEMGSLELDEGTFE 240 (893)
T ss_pred cceeccchhcchhhhhcCCcceEEeCCCCCcccchhhhHHHHhhhhhhcccccccHHHHHHhcchHHhhCCcccchHHHH
Confidence 9999998863 2356 88871 159999998 443 248999999999999
Q ss_pred HHHHHHhccchhhhhhhhhcccCCcccccCcccccccCCCCCCCCCcEEEccCCCceeccccccccccCCCCccceeecC
Q psy5645 308 KMIAELEVRCWDKVQTIIKEEEGLGLEFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVL 387 (525)
Q Consensus 308 ~~i~~lE~~~~~~~~~~~~~~~~~~~e~ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~ 387 (525)
+||++||.++|++|+.++.++.|++++++|+..|+||+.+++++.|+|||||+||++|||.||||..+|+|.|+|+.|..
T Consensus 241 RiieelE~~c~kqi~~~l~~eeglgie~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Cal 320 (893)
T KOG0954|consen 241 RIIEELERRCKKQINHALETEEGLGIEYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCAL 320 (893)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccceeeccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCccccCCCcccccccccCCCccEEccCcccccccCCCCcccccccccccccCCCCCceeecCCCC
Q psy5645 388 GKRPECILCPNKGGAMKCARSGNKWAHVSCALWIPEVSIGCVEKMEPITKISSIPQSRWALICILCRERLGACIQCSVKT 467 (525)
Q Consensus 388 ~~~~~C~LCp~~gGalK~t~~g~~WvHv~CAlwipev~f~~~~~~epI~~i~~I~~~r~~l~C~iC~~~~GacIqCs~~~ 467 (525)
+..+.|+|||++|||||.+.+|.+|+|++||||||||+|++.+.|+||++|+.|+.+||.+.|.+|+.+.||||||++++
T Consensus 321 g~~ppCvLCPkkGGamK~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~ 400 (893)
T KOG0954|consen 321 GIEPPCVLCPKKGGAMKPTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKT 400 (893)
T ss_pred cCCCCeeeccccCCcccccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccchhccCCeEEEEeeccccCCCceEEEcCCCCCCCCc
Q psy5645 468 CKTAYHVTCAFKHGLEMRAIIEDENAEDGVKLRSYCQKHSLTTK 511 (525)
Q Consensus 468 C~~aFHvtCA~~aGl~m~~~~~~~~~~d~~~~~~yC~kHs~~~~ 511 (525)
|.++||++||+.+|+.|+++.. ..|.+.++.||.+|+....
T Consensus 401 C~t~fHv~CA~~aG~~~~~~~~---~~D~v~~~s~c~khs~~~~ 441 (893)
T KOG0954|consen 401 CRTAFHVTCAFEAGLEMKTILK---ENDEVKFKSYCSKHSDHRE 441 (893)
T ss_pred hhhhccchhhhhcCCeeeeeec---cCCchhheeeccccccccc
Confidence 9999999999999999997643 2577889999999987764
No 2
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=100.00 E-value=8.3e-49 Score=407.87 Aligned_cols=230 Identities=35% Similarity=0.712 Sum_probs=191.6
Q ss_pred ccccCCCCcc-ccC---CCCCCCCCCCHHHHHHHHHHHhccchhhhhhhh-hcccCCcccccCcccccccCCCCCCCCCc
Q psy5645 280 NEPFKLGNNK-HLF---PIPPGLPAIQEDRLEKMIAELEVRCWDKVQTII-KEEEGLGLEFDENVICDVCRSPDSEEGNE 354 (525)
Q Consensus 280 ~~~y~~~~~~-~~~---~~~~~~~~~~~~~~e~~i~~lE~~~~~~~~~~~-~~~~~~~~e~ded~~C~VC~~~e~ed~N~ 354 (525)
...||||+-| .|+ ....=...++++.||.+|++||+++|.-.+... +..+..+.+-.-|+.|.+|.+.++++.|.
T Consensus 130 ~v~YdlDe~D~m~l~Ylne~~~~e~vS~e~fEii~t~lE~EWf~~e~~lp~k~vepi~~~d~~d~~C~~c~~t~~eN~na 209 (669)
T COG5141 130 SVIYDLDEYDTMWLRYLNESAIDENVSEEAFEIIVTRLEKEWFFFEHGLPDKHVEPIEPSDEFDDICTKCTSTHNENSNA 209 (669)
T ss_pred ceeecccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccCccccccccCCchhhhhhhHhccccccCCcce
Confidence 4568899888 332 223333679999999999999998554433333 22333333333467999999999999999
Q ss_pred EEEccCCCceeccccccccccCCCCccceeecCCCC--CccccCCCCCCCCccccCCCcccccccccCCCccEEccCccc
Q psy5645 355 MVFCDCCNICVHQACYGITTIPSGSWLCRTCVLGKR--PECILCPNKGGAMKCARSGNKWAHVSCALWIPEVSIGCVEKM 432 (525)
Q Consensus 355 lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~~~--~~C~LCp~~gGalK~t~~g~~WvHv~CAlwipev~f~~~~~~ 432 (525)
|||||+|+++|||.||||..+|+|.|+|++|..+.. ..|.+||.++||||+|.+| +|+|++||+|+|+++|++...+
T Consensus 210 iVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dg-rW~H~iCA~~~pelsF~~l~~~ 288 (669)
T COG5141 210 IVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDG-RWGHVICAMFNPELSFGHLLSK 288 (669)
T ss_pred EEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCC-chHhHhHHHhcchhcccccccc
Confidence 999999999999999999999999999999999853 4599999999999999887 9999999999999999999999
Q ss_pred ccccCCCCcccccccccccccCCCCCceeecCCCCCCceeeccchhccCCeEEEEeeccccCCCceEEEcCCCCCCCC
Q psy5645 433 EPITKISSIPQSRWALICILCRERLGACIQCSVKTCKTAYHVTCAFKHGLEMRAIIEDENAEDGVKLRSYCQKHSLTT 510 (525)
Q Consensus 433 epI~~i~~I~~~r~~l~C~iC~~~~GacIqCs~~~C~~aFHvtCA~~aGl~m~~~~~~~~~~d~~~~~~yC~kHs~~~ 510 (525)
+||.+|.+++.+||++.|.||+.+.|+||||+..+|.++|||+||+++|+++..+.......+.+....||++|.+..
T Consensus 289 dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag~f~~~~~s~n~~s~~id~e~~c~kh~p~g 366 (669)
T COG5141 289 DPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAGYFDLNIYSHNGISYCIDHEPLCRKHYPLG 366 (669)
T ss_pred chhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhcchhhhhhhcccccceeecchhhhcCCCCcc
Confidence 999999999999999999999999999999999999999999999999999873222122233355668999999864
No 3
>KOG0955|consensus
Probab=100.00 E-value=6.3e-47 Score=430.32 Aligned_cols=300 Identities=34% Similarity=0.710 Sum_probs=231.1
Q ss_pred cccccCCCCCccccccchhhhhccCCCCCCCCCCCeEEechhhhHh-------hhcCcccc--------CCCC-----CC
Q psy5645 200 SIYNRNTNEAPAELFRKDLISAMKLPDSEPLKSDEFWVISDQWKQE-------WERGVQVP--------VNPD-----SL 259 (525)
Q Consensus 200 ~~~~~~~~~~Pae~~r~d~isa~k~~ds~~~~~~~~~~~~d~wkqe-------w~~gvqvp--------~~p~-----~~ 259 (525)
+.-.+.....|..++.-|++..--+.++. |+.+.-+|..+ -.+++-.| .+|. ..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1051)
T KOG0955|consen 47 GRVFQISIFPPLGKVNEDLITTEEIFPNK------SVHVNKNWERPSFDIQEKENKNNERPTLNKLSKDISPNAYTIPRS 120 (1051)
T ss_pred cceeecccCCcccccchhhcccccccccc------cccccccccCCccchhhhccccccccchhhcccccCccccccccC
Confidence 33346778888888888887765443332 22332222110 01112112 2222 46
Q ss_pred CCCcEEEccCCCC---CCCCCC-C----------c--cccCCCCcc-ccC------CCCCCCCCCCHHHHHHHHHHHhcc
Q psy5645 260 PGPQVTVVSTLNS---TRYPNN-Y----------N--EPFKLGNNK-HLF------PIPPGLPAIQEDRLEKMIAELEVR 316 (525)
Q Consensus 260 p~~~~~~~~~~~~---~~~p~~-~----------~--~~y~~~~~~-~~~------~~~~~~~~~~~~~~e~~i~~lE~~ 316 (525)
|++.++.++.... +.+|.. | + ..|++|+.+ .|+ ....|.+.+...+||.+|+++|++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~e~~y~~de~d~~wl~~~n~~~~~~~~~~v~~~~~~~~~dr~eke 200 (1051)
T KOG0955|consen 121 PQHKVREFELLRPMDAPPRPNFYYDEIEKSKETLDEEVEYDLDEEDYSWLDIMNELRTRNGVFDVSIDTFELLVDRLEKE 200 (1051)
T ss_pred hhhhheeccccccccCCCCCCcchhhhccchhhhccccccchHHHHHHHHhhhhHHHhhcCCccccccchhhhhhhHHHH
Confidence 7777776665432 233432 2 1 258888877 443 347899999999999999999998
Q ss_pred chhhhhhhhhcccCCcccccCcccccccCCCCCCCCCcEEEccCCCceeccccccccccCCCCccceeecCCC--CCccc
Q psy5645 317 CWDKVQTIIKEEEGLGLEFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLGK--RPECI 394 (525)
Q Consensus 317 ~~~~~~~~~~~~~~~~~e~ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~~--~~~C~ 394 (525)
++..-+....... ..+++|.+|+||.+.++.+.|.+||||+||++|||+|||+..||+|.|+|++|.++. ...|+
T Consensus 201 ~~f~~~e~~~~~~---~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~ 277 (1051)
T KOG0955|consen 201 SYFKNYELGDPKD---ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCL 277 (1051)
T ss_pred HHhhhhhccCCCc---cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceE
Confidence 8554444432221 456788999999999999999999999999999999999999999999999999984 46899
Q ss_pred cCCCCCCCCccccCCCcccccccccCCCccEEccCcccccccCCCCcccccccccccccCCCC-CceeecCCCCCCceee
Q psy5645 395 LCPNKGGAMKCARSGNKWAHVSCALWIPEVSIGCVEKMEPITKISSIPQSRWALICILCRERL-GACIQCSVKTCKTAYH 473 (525)
Q Consensus 395 LCp~~gGalK~t~~g~~WvHv~CAlwipev~f~~~~~~epI~~i~~I~~~r~~l~C~iC~~~~-GacIqCs~~~C~~aFH 473 (525)
+||..|||||+|.+| +|+|++||+|+||++|++...++||.+|++|+..||++.|++|+++. ||||||+..+|.++||
T Consensus 278 ~cp~~~gAFkqt~dg-rw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~h 356 (1051)
T KOG0955|consen 278 LCPSKGGAFKQTDDG-RWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFH 356 (1051)
T ss_pred eccCCCCcceeccCC-ceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhh
Confidence 999999999999887 99999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred ccchhccCCeEEEEeeccccC----CCceEEEcCCCCCCC
Q psy5645 474 VTCAFKHGLEMRAIIEDENAE----DGVKLRSYCQKHSLT 509 (525)
Q Consensus 474 vtCA~~aGl~m~~~~~~~~~~----d~~~~~~yC~kHs~~ 509 (525)
|+||+++|++|+.....+... ..+...+||++|++.
T Consensus 357 vtca~~agl~m~~~~~~~~s~~~~s~~v~~~syC~~H~pp 396 (1051)
T KOG0955|consen 357 VTCARRAGLYMKSNTVKELSKNGTSQSVNKISYCDKHTPP 396 (1051)
T ss_pred hhhHhhcCceEeecccccccccccccccceeeeccCCCCc
Confidence 999999999998432221111 125778999999998
No 4
>KOG0956|consensus
Probab=100.00 E-value=1e-40 Score=357.77 Aligned_cols=172 Identities=45% Similarity=0.951 Sum_probs=157.1
Q ss_pred cccccCCCCCCCCCcEEEccC--CCceeccccccccccCCCCccceeecCC---CCCccccCCCCCCCCccccCCCcccc
Q psy5645 340 ICDVCRSPDSEEGNEMVFCDC--CNICVHQACYGITTIPSGSWLCRTCVLG---KRPECILCPNKGGAMKCARSGNKWAH 414 (525)
Q Consensus 340 ~C~VC~~~e~ed~N~lv~CD~--C~i~VHq~CYgi~~iPeg~WlC~~C~~~---~~~~C~LCp~~gGalK~t~~g~~WvH 414 (525)
-|+||-+...+..|+|||||+ |-++|||.||||..+|.|.||||+|+.. .++.|.|||.++||||+|+++ .|+|
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~-GWAH 85 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNG-GWAH 85 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCC-CceE
Confidence 599999999999999999996 9999999999999999999999999986 368999999999999999876 8999
Q ss_pred cccccCCCccEEccCcccccccCCCCcccccccccccccCCC-------CCceeecCCCCCCceeeccchhccCCeEEEE
Q psy5645 415 VSCALWIPEVSIGCVEKMEPITKISSIPQSRWALICILCRER-------LGACIQCSVKTCKTAYHVTCAFKHGLEMRAI 487 (525)
Q Consensus 415 v~CAlwipev~f~~~~~~epI~~i~~I~~~r~~l~C~iC~~~-------~GacIqCs~~~C~~aFHvtCA~~aGl~m~~~ 487 (525)
|+|||+||||.|+|+..|||| -++.||.+|++..|+||.+. .|||++|...+|+++||||||+.+||..+
T Consensus 86 VVCALYIPEVrFgNV~TMEPI-iLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCE-- 162 (900)
T KOG0956|consen 86 VVCALYIPEVRFGNVHTMEPI-ILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCE-- 162 (900)
T ss_pred EEEEeeccceeecccccccce-eeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhcccee--
Confidence 999999999999999999999 48999999999999999864 59999999999999999999999999986
Q ss_pred eeccccCCCceEEEcCCCCCCCCccccCc
Q psy5645 488 IEDENAEDGVKLRSYCQKHSLTTKKTEKT 516 (525)
Q Consensus 488 ~~~~~~~d~~~~~~yC~kHs~~~~~~~~~ 516 (525)
++++..|+++|--||..|..+.++..+.
T Consensus 163 -E~gn~~dNVKYCGYCk~HfsKlkk~~~~ 190 (900)
T KOG0956|consen 163 -EEGNISDNVKYCGYCKYHFSKLKKSPAI 190 (900)
T ss_pred -ccccccccceechhHHHHHHHhhcCCCc
Confidence 3345678899999999998776655443
No 5
>KOG0957|consensus
Probab=99.96 E-value=1.6e-30 Score=272.02 Aligned_cols=167 Identities=38% Similarity=0.870 Sum_probs=144.9
Q ss_pred ccccccCCCCCCCCCcEEEccCCCceecccccccc---ccCC-------CCccceeecCCCC-CccccCCCCCCCCcccc
Q psy5645 339 VICDVCRSPDSEEGNEMVFCDCCNICVHQACYGIT---TIPS-------GSWLCRTCVLGKR-PECILCPNKGGAMKCAR 407 (525)
Q Consensus 339 ~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~---~iPe-------g~WlC~~C~~~~~-~~C~LCp~~gGalK~t~ 407 (525)
..|+||.+..+++.|++|.||+||+.||..|||+. .||+ ..|||..|..+.. +.|.|||+++|+||.|+
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKetD 199 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKETD 199 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccccc
Confidence 58999999999999999999999999999999985 3555 3699999999976 99999999999999998
Q ss_pred CCCcccccccccCCCccEEccCcccccccCCCCccccccc-ccccccCCC----CCceeecCCCCCCceeeccchhccCC
Q psy5645 408 SGNKWAHVSCALWIPEVSIGCVEKMEPITKISSIPQSRWA-LICILCRER----LGACIQCSVKTCKTAYHVTCAFKHGL 482 (525)
Q Consensus 408 ~g~~WvHv~CAlwipev~f~~~~~~epI~~i~~I~~~r~~-l~C~iC~~~----~GacIqCs~~~C~~aFHvtCA~~aGl 482 (525)
.| +|||.+|||++|+|.|+..+.+.+|+ +..+..+.|. ..|++|..+ .|.||.|...-|..+||||||+..||
T Consensus 200 ig-rWvH~iCALYvpGVafg~~~~l~~Vt-l~em~ysk~Gak~Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk~Gl 277 (707)
T KOG0957|consen 200 IG-RWVHAICALYVPGVAFGQTHTLCGVT-LEEMDYSKFGAKTCSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQKLGL 277 (707)
T ss_pred hh-hHHHHHHHhhcCcccccccccccccc-HHHhhhhhhccchhccccchhhhhcceeeeccchhhhhhhhhhHHhhhcc
Confidence 77 99999999999999999999988885 5666666664 579999875 79999999999999999999999999
Q ss_pred eEEEEeeccccCCCceEEEcCCCCCCCC
Q psy5645 483 EMRAIIEDENAEDGVKLRSYCQKHSLTT 510 (525)
Q Consensus 483 ~m~~~~~~~~~~d~~~~~~yC~kHs~~~ 510 (525)
.+++..++. .. ..|.+||++|+...
T Consensus 278 Lvea~~e~D-iA--dpfya~CK~Ht~r~ 302 (707)
T KOG0957|consen 278 LVEATDEND-IA--DPFYAFCKKHTNRD 302 (707)
T ss_pred eeecccccc-ch--hhHHHHHHhhcchh
Confidence 998653322 22 34678999998654
No 6
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.92 E-value=1.3e-25 Score=197.42 Aligned_cols=109 Identities=52% Similarity=1.027 Sum_probs=99.6
Q ss_pred ccccCCCCCCCCccccCCCcccccccccCCCccEEccCcccccccCCCCcccccccccccccCCCCCceeecCCCCCCce
Q psy5645 392 ECILCPNKGGAMKCARSGNKWAHVSCALWIPEVSIGCVEKMEPITKISSIPQSRWALICILCRERLGACIQCSVKTCKTA 471 (525)
Q Consensus 392 ~C~LCp~~gGalK~t~~g~~WvHv~CAlwipev~f~~~~~~epI~~i~~I~~~r~~l~C~iC~~~~GacIqCs~~~C~~a 471 (525)
.|.|||.+|||||+|.++ .|||++||+|+|++.|.+...++++. +++++++++++.|.+|+++.|++|+|+..+|.++
T Consensus 2 ~C~lC~~~~Galk~t~~~-~WvHv~Cal~~~~~~~~~~~~~~~v~-~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~ 79 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDG-QWVHVLCALWIPEVIFNNGESMEPVD-ISNIPPSRFKLKCSICGKSGGACIKCSHPGCSTA 79 (110)
T ss_pred ccEeCCCCCCcccCccCC-cEEEeEccceeCccEEeechhcCccc-ceeecchhcCCcCcCCCCCCceeEEcCCCCCCcC
Confidence 699999999999999865 89999999999999999999999997 9999999999999999999999999999999999
Q ss_pred eeccchhccCCeEEEEeeccccCCCceEEEcCCCC
Q psy5645 472 YHVTCAFKHGLEMRAIIEDENAEDGVKLRSYCQKH 506 (525)
Q Consensus 472 FHvtCA~~aGl~m~~~~~~~~~~d~~~~~~yC~kH 506 (525)
||++||+.+|+.|..... ++...+.+||++|
T Consensus 80 fH~~CA~~~g~~~~~~~~----~~~~~~~~~C~~H 110 (110)
T PF13832_consen 80 FHPTCARKAGLYFEIENE----EDNVQFIAYCPKH 110 (110)
T ss_pred CCHHHHHHCCCeEEeeec----CCCceEEEECCCC
Confidence 999999999999885422 1256789999999
No 7
>KOG0954|consensus
Probab=99.73 E-value=1.3e-18 Score=189.81 Aligned_cols=160 Identities=26% Similarity=0.394 Sum_probs=111.6
Q ss_pred CCCCCccccCCCCCCcc-ccCCCccCC-------CCCCCCCCCCCCCceEecCCCCcChhhhh----ccCC---------
Q psy5645 17 AKPFKVPILNYTGSGYS-TKALGVRRE-------GARKALHDPTAPNALVLYTPPQLSAHDLL----KIDK--------- 75 (525)
Q Consensus 17 ~k~Fk~P~~~~~~~~~~-~~~lg~~~~-------~~~~plhDp~~~~AlVl~~P~~~~~~~~~----~~~~--------- 75 (525)
.++|..|+..+.. +|. ..+++.++. ....|.-+|-++.+.++..+....+--|+ .++|
T Consensus 27 ~r~~~~~~~~~~~-~~~~~~~~~~~~~r~A~~~~s~ss~~~~~~d~Sss~~s~e~~sis~t~~~~~~~~kK~~s~~h~~a 105 (893)
T KOG0954|consen 27 YRPFRRVALDKEN-GYEDMGSLEIDFLRQASKNLSESSPMKRPRDPSSSVLSDEGLSISLTWLLKSSSNKKRSSISHRGA 105 (893)
T ss_pred CCCceeeeccCCC-CCCCccccccchhhhhccCcccCCccccCCCcccccccCCCcchhhhhcccchhhhhhhhcccccc
Confidence 3677777742211 121 234443322 25788889999999999888732222222 0100
Q ss_pred --C-C---ceee--EE-------eCcc-ccccccccCCCceecccccC----------------------CCCCcceEee
Q psy5645 76 --D-K---IQVH--VV-------VDPV-LSNIYLTWKTNHQYEIRLPL----------------------FRPKHKYIRI 117 (525)
Q Consensus 76 --~-~---~~V~--VV-------VDP~-L~~~ld~w~~~~~~~~~vp~----------------------~~~~~k~i~~ 117 (525)
. + ..+. -. .||. -.-+-|+||++|++|+|||| |..|+|||+|
T Consensus 106 dkkpkel~Rqdli~amkl~dse~~~p~~y~~~~D~wk~ewekgvQvpaspd~lpqp~v~~dse~v~~~~~fs~pkkyivc 185 (893)
T KOG0954|consen 106 DKKPKELYRQDLISAMKLPDSEHLNPDEYLDFADPWKQEWEKGVQVPASPDTLPQPSVRVDSEDVQPETDFSRPKKYIVC 185 (893)
T ss_pred ccchHHHHHhhhhhhccCccccccCccceeecCCccchhhhccccccCCCCcCCCcceeccchhcchhhhhcCCcceEEe
Confidence 0 0 0000 00 1221 11234999999999999999 6677899999
Q ss_pred CCCCCCCCCcccccc-hHHhhhhccccCCchhhHHHHHHHhHHHHhcCCCcCCcccccccCCCc
Q psy5645 118 TKKDSFKPEEHVLSN-VLEKAEKACLYDLDDCDIAWLNILNGERACMGIMYNTQDDEEATSSPM 180 (525)
Q Consensus 118 ~~~~~~~~~~~~~~~-~~~~a~~~c~ydld~~d~~wl~~~n~e~~~~g~~~~de~~~e~~~~~~ 180 (525)
+.++. +++||.+ +.++|+++||||+|+||.|||+++|+||++||.+|||+.||||.-...
T Consensus 186 ~~~~~---~e~~yn~~~~~lae~tcrydid~~d~awL~~~n~e~~~~G~~~l~~~~~eRiieel 246 (893)
T KOG0954|consen 186 SDGEV---PELGYNLLIKDLAESTCRYDIDDMDPAWLQLVNEERAEMGSLELDEGTFERIIEEL 246 (893)
T ss_pred CCCCC---cccchhhhHHHHhhhhhhcccccccHHHHHHhcchHHhhCCcccchHHHHHHHHHH
Confidence 99985 7888877 999999999999999999999999999999999999999999976543
No 8
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.68 E-value=1.3e-17 Score=141.40 Aligned_cols=88 Identities=40% Similarity=0.719 Sum_probs=78.3
Q ss_pred ccccccCCCccEEccCcc--cccccCCCCcccccccccccccCCCCCceeecCCCCCCceeeccchhccCCeEEEEeecc
Q psy5645 414 HVSCALWIPEVSIGCVEK--MEPITKISSIPQSRWALICILCRERLGACIQCSVKTCKTAYHVTCAFKHGLEMRAIIEDE 491 (525)
Q Consensus 414 Hv~CAlwipev~f~~~~~--~epI~~i~~I~~~r~~l~C~iC~~~~GacIqCs~~~C~~aFHvtCA~~aGl~m~~~~~~~ 491 (525)
|+.||+|+|++.+.+... +.++.+++.++..++++.|++|+++.||+|+|..++|.++||++||+.+|+.++..
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~---- 76 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIEFD---- 76 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEEEc----
Confidence 899999999999988763 66788888999999999999999988999999999999999999999999998753
Q ss_pred ccCCCceEEEcCCCCC
Q psy5645 492 NAEDGVKLRSYCQKHS 507 (525)
Q Consensus 492 ~~~d~~~~~~yC~kHs 507 (525)
+++..+.+||++|+
T Consensus 77 --~~~~~~~~~C~~H~ 90 (90)
T PF13771_consen 77 --EDNGKFRIFCPKHS 90 (90)
T ss_pred --cCCCceEEEChhcC
Confidence 13457899999996
No 9
>PF08658 Rad54_N: Rad54 N terminal; InterPro: IPR013967 This is the N-terminal of the DNA repair protein Rad54 []. Rad54 functions in the recombinational DNA repair (RAD52) pathway. It dissociates RAD51 from nucleoprotein filaments formed on dsDNA and could be involved in the turnover of RAD51 protein-dsDNA filaments. Deficient mice also show significantly shorter telomeres than wild-type controls, indicating that the protein activity plays an essential role in telomere length maintenance in mammals. Non-homologous end joining (NHEJ) and homologous recombination (HR) represent the two major pathways of DNA double-strand break (DSB) repair in eukaryotic cells. LIG4 and RAD54L cooperate to support cellular proliferation, repair spontaneous DSBs, and prevent chromosome and single chromatid aberrations [, ]. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1Z3I_X.
Probab=99.22 E-value=2.5e-12 Score=124.34 Aligned_cols=58 Identities=41% Similarity=0.713 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhCCCCCccccCCCCCCc----cccCCCccCCC--CCCCCCCCCCCCceEecCCC
Q psy5645 6 DHWENLIRQILAKPFKVPILNYTGSGY----STKALGVRREG--ARKALHDPTAPNALVLYTPP 63 (525)
Q Consensus 6 ~~~e~~i~~~~~k~Fk~P~~~~~~~~~----~~~~lg~~~~~--~~~plhDp~~~~AlVl~~P~ 63 (525)
..++..|..+|+|+|++|+.|....+| ..++||+|+.. .++|||||++++|||||+|+
T Consensus 75 ~~~~~~~~~~l~k~F~vP~~~~~~~~y~~~~~~~~LG~r~~~~~~~rpLHDP~~e~AiVLydPt 138 (196)
T PF08658_consen 75 VFKEKDIETVLRKPFSVPIINKKSGNYIPSRPPPTLGMRRGAIFVPRPLHDPSGEFAIVLYDPT 138 (196)
T ss_dssp -------------------------------------SS-SS--S---SS-TTSTT--EEE---
T ss_pred ccccCCHHHHcCCCCCCceecccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCEEEEECCC
Confidence 456778999999999999943333333 55899999997 69999999999999999999
No 10
>KOG1080|consensus
Probab=99.21 E-value=1.4e-11 Score=142.43 Aligned_cols=143 Identities=40% Similarity=0.839 Sum_probs=126.4
Q ss_pred CcccccccCCCCCCCCCcEEEccCCCceeccccccccccCCC-CccceeecCC-CCCccccCCCCCCCCccccCCCcccc
Q psy5645 337 ENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSG-SWLCRTCVLG-KRPECILCPNKGGAMKCARSGNKWAH 414 (525)
Q Consensus 337 ed~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg-~WlC~~C~~~-~~~~C~LCp~~gGalK~t~~g~~WvH 414 (525)
.-..|.+|+..+....|.++.|+.|.+.+|+.|||....+.+ .|+|+.|... ....|++|+..|||++.+..+ .|+|
T Consensus 572 ~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~g~al~p~d~g-r~~~ 650 (1005)
T KOG1080|consen 572 TTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGTSWVCDSCETLDIKRSCCLCPVKGGALKPTDEG-RWVH 650 (1005)
T ss_pred CcccccccccccccccceeeeeccccccCCCcccccCCCCCCCcchhhccccccCCchhhhccccCcccCCCCcc-chhh
Confidence 346899999999999999999999999999999999876665 6999999973 456899999999999999854 9999
Q ss_pred cccccCCCccEEccCcccccccCCCCcccccccccccccCCCCCceeecCCCCCCceeeccchhccCCeEEE
Q psy5645 415 VSCALWIPEVSIGCVEKMEPITKISSIPQSRWALICILCRERLGACIQCSVKTCKTAYHVTCAFKHGLEMRA 486 (525)
Q Consensus 415 v~CAlwipev~f~~~~~~epI~~i~~I~~~r~~l~C~iC~~~~GacIqCs~~~C~~aFHvtCA~~aGl~m~~ 486 (525)
+-||.|.+++.+++...|+|+.++..++.......|.+ .|.|.||. .|...||..||..+|+.+..
T Consensus 651 ~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~a~~~~~~~~~ 716 (1005)
T KOG1080|consen 651 VECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI----HGSCRQCC--KCETGSHAMCASRAGYIMEA 716 (1005)
T ss_pred hhchhccccccCCCccCCCCcccccccCccchhhhccc----cccccccc--hhhhcceehhhcCccChhhh
Confidence 99999999999999999999999999988777777777 47788887 68899999999999987753
No 11
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=99.08 E-value=2.2e-11 Score=87.40 Aligned_cols=35 Identities=51% Similarity=1.405 Sum_probs=22.0
Q ss_pred CCcEEEccCCCceeccccccccccCCC-Cccceeec
Q psy5645 352 GNEMVFCDCCNICVHQACYGITTIPSG-SWLCRTCV 386 (525)
Q Consensus 352 ~N~lv~CD~C~i~VHq~CYgi~~iPeg-~WlC~~C~ 386 (525)
.|+|++|++|++.||+.|||+..+|++ .|+|++|+
T Consensus 1 ~n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 1 TNPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp -CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CCceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 379999999999999999999999887 89999995
No 12
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=99.04 E-value=2.7e-10 Score=106.73 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=83.6
Q ss_pred cccCCCCCcccccc-chhhhhccCCCCCC-----------CCCCCeEEechhhhHhhhcCccccCCCCC-----------
Q psy5645 202 YNRNTNEAPAELFR-KDLISAMKLPDSEP-----------LKSDEFWVISDQWKQEWERGVQVPVNPDS----------- 258 (525)
Q Consensus 202 ~~~~~~~~Pae~~r-~d~isa~k~~ds~~-----------~~~~~~~~~~d~wkqew~~gvqvp~~p~~----------- 258 (525)
+.+.+.++|+.||| +|+.+++..+++.. +...++. |++||++++|.|.++..
T Consensus 3 ~~~ld~~~~l~I~~~~d~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-----~~~e~e~~~q~~~~~~~~~~~~~~~~~~ 77 (160)
T PF10513_consen 3 PRRLDIKKPLPIFREEDLDDLDESEDSSNKNQAVPQSPTGVEKEEKL-----SKQEWEKHLQKPISASQNSKSKKKKEKK 77 (160)
T ss_pred CCCCCCCCCeeEEechhcccccccccccccccccccccCCccchhhc-----cccccccccccccchhhhhhcccccccc
Confidence 45778889999999 88899998866522 1222332 99999999999988754
Q ss_pred -CCCCcEEEccC--CCCCCC--CCCC-------------ccccCCCCcc-ccC------CCCCCCCCCCHHHHHHHHHHH
Q psy5645 259 -LPGPQVTVVST--LNSTRY--PNNY-------------NEPFKLGNNK-HLF------PIPPGLPAIQEDRLEKMIAEL 313 (525)
Q Consensus 259 -~p~~~~~~~~~--~~~~~~--p~~~-------------~~~y~~~~~~-~~~------~~~~~~~~~~~~~~e~~i~~l 313 (525)
||.|.|++++. .....| |..| ..+||||++| .|+ ....|...||++.||.+|++|
T Consensus 78 ~IP~P~~~~~~~~~~~~~~f~~p~~yi~~~~~~~e~~~~~veYDmDeeD~~wL~~~N~~r~~~~~~~ls~~~FE~~md~l 157 (160)
T PF10513_consen 78 KIPTPSVRVVDYEKPYSPPFKRPSSYIRFSEKSVEDLDEGVEYDMDEEDEEWLELLNKKRKSDGLEPLSEEDFEIIMDRL 157 (160)
T ss_pred cCCCCceEEecCcCCCCCcccCCccccccccCCHHHhccCcCCCCchHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Confidence 99999997762 223345 6555 1379999999 454 235799999999999999999
Q ss_pred hcc
Q psy5645 314 EVR 316 (525)
Q Consensus 314 E~~ 316 (525)
|++
T Consensus 158 Eke 160 (160)
T PF10513_consen 158 EKE 160 (160)
T ss_pred hCC
Confidence 985
No 13
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=98.43 E-value=2e-07 Score=87.35 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=35.3
Q ss_pred ccccCCchhhHHHHHHHhHHHHhcCCCcCCccccccc
Q psy5645 140 ACLYDLDDCDIAWLNILNGERACMGIMYNTQDDEEAT 176 (525)
Q Consensus 140 ~c~ydld~~d~~wl~~~n~e~~~~g~~~~de~~~e~~ 176 (525)
.|.||||+.|..||+.+|.+++.+|++.|++.++|..
T Consensus 117 ~veYDmDeeD~~wL~~~N~~r~~~~~~~ls~~~FE~~ 153 (160)
T PF10513_consen 117 GVEYDMDEEDEEWLELLNKKRKSDGLEPLSEEDFEII 153 (160)
T ss_pred CcCCCCchHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Confidence 7999999999999999999999999999999999863
No 14
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.22 E-value=6.3e-07 Score=68.26 Aligned_cols=46 Identities=43% Similarity=1.038 Sum_probs=38.7
Q ss_pred cccccCCCCCCCCCcEEEccCCCceeccccccccc----cCCCCccceeecC
Q psy5645 340 ICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITT----IPSGSWLCRTCVL 387 (525)
Q Consensus 340 ~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~----iPeg~WlC~~C~~ 387 (525)
+|.||.. .++++.||+||.|+..||..|+++.. ++.+.|+|..|..
T Consensus 1 ~C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ--SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS--SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC--cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4889998 45668999999999999999999863 4556999999863
No 15
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512|consensus
Probab=98.05 E-value=1.5e-06 Score=87.79 Aligned_cols=51 Identities=33% Similarity=0.920 Sum_probs=44.3
Q ss_pred ccCcccccccCCCCCCCCCcEEEccCCCceeccccccccccCCCCccce-eecC
Q psy5645 335 FDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCR-TCVL 387 (525)
Q Consensus 335 ~ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~-~C~~ 387 (525)
.-+...|.||+.+.-|+ +|+|||.|++++|..|.|+..+|.|.|.|+ +|..
T Consensus 311 C~~C~lC~IC~~P~~E~--E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 311 CSSCELCRICLGPVIES--EHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCRE 362 (381)
T ss_pred hcccHhhhccCCcccch--heeccccccCCCCccccccccccCccchhhhHHHH
Confidence 34456899999997665 999999999999999999999999999999 3544
No 17
>KOG1244|consensus
Probab=97.93 E-value=3.9e-06 Score=84.30 Aligned_cols=51 Identities=31% Similarity=0.804 Sum_probs=43.0
Q ss_pred ccCcccccccCCCCCCCCCcEEEccCCCceecccccccc--ccCCCCccceeecC
Q psy5645 335 FDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGIT--TIPSGSWLCRTCVL 387 (525)
Q Consensus 335 ~ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~--~iPeg~WlC~~C~~ 387 (525)
.-|-..|+||... +++++|+|||.|+++||++|+..+ ..|+|+|.|..|..
T Consensus 278 cieck~csicgts--enddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 278 CIECKYCSICGTS--ENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eeecceeccccCc--CCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 3445689999875 566799999999999999999965 46999999999965
No 18
>KOG4323|consensus
Probab=97.78 E-value=2.5e-05 Score=84.42 Aligned_cols=143 Identities=23% Similarity=0.294 Sum_probs=95.6
Q ss_pred CcccccccCCCCCCCCCcEEEccCCCceeccccccccccCCCCccceeecCCCCCccccCCCCCCCCccccCCCcccccc
Q psy5645 337 ENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLGKRPECILCPNKGGAMKCARSGNKWAHVS 416 (525)
Q Consensus 337 ed~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~~~~~C~LCp~~gGalK~t~~g~~WvHv~ 416 (525)
+...|.||........|++++|++|..++||.|.-......+.|.+..|.+... ...||++|... -+|
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~------~~~g~a~K~g~----~a~-- 149 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIF------SQEGGALKKGR----LAR-- 149 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCcccccccccccc------ccccccccccc----ccc--
Confidence 346899999998888899999999999999999766666668899999988654 45788888664 244
Q ss_pred cccCCCccEEccCcccccccCCCCcccccccccccccCCC-C---CceeecCCCCCCceeeccchhccCCeEEEEeeccc
Q psy5645 417 CALWIPEVSIGCVEKMEPITKISSIPQSRWALICILCRER-L---GACIQCSVKTCKTAYHVTCAFKHGLEMRAIIEDEN 492 (525)
Q Consensus 417 CAlwipev~f~~~~~~epI~~i~~I~~~r~~l~C~iC~~~-~---GacIqCs~~~C~~aFHvtCA~~aGl~m~~~~~~~~ 492 (525)
+-+.+........ ...+.++.|++|..- . .-+|||. .|.++||-.|.+..--.+.
T Consensus 150 -----~~l~y~~~~l~wD-------~~~~~n~qc~vC~~g~~~~~NrmlqC~--~C~~~fHq~Chqp~i~~~l------- 208 (464)
T KOG4323|consen 150 -----PSLPYPEASLDWD-------SGHKVNLQCSVCYCGGPGAGNRMLQCD--KCRQWYHQACHQPLIKDEL------- 208 (464)
T ss_pred -----ccccCcccccccC-------ccccccceeeeeecCCcCccceeeeec--ccccHHHHHhccCCCCHhh-------
Confidence 2222221111000 011234679999843 1 2489999 8999999999865432222
Q ss_pred cCCCceEEEcCCCCCCCCccc
Q psy5645 493 AEDGVKLRSYCQKHSLTTKKT 513 (525)
Q Consensus 493 ~~d~~~~~~yC~kHs~~~~~~ 513 (525)
..| ..+..||..=....++.
T Consensus 209 ~~D-~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 209 AGD-PFYEWFCDVCNRGPKKV 228 (464)
T ss_pred ccC-ccceEeehhhccchhhc
Confidence 223 34677887766554443
No 19
>KOG4323|consensus
Probab=97.54 E-value=2.8e-05 Score=83.96 Aligned_cols=51 Identities=35% Similarity=0.727 Sum_probs=44.1
Q ss_pred ccccccCCCCCCCCCcEEEccCCCceeccccccccc------cCCCCccceeecCCC
Q psy5645 339 VICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITT------IPSGSWLCRTCVLGK 389 (525)
Q Consensus 339 ~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~------iPeg~WlC~~C~~~~ 389 (525)
..|+||..+.....|.||+|++|+-.|||.|+-... -+...|+|..|..+.
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 459999999888999999999999999999998532 356789999999873
No 20
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=97.21 E-value=0.0002 Score=67.85 Aligned_cols=63 Identities=27% Similarity=0.702 Sum_probs=48.3
Q ss_pred cccccCC-CCCCCCCcEEEccCCCceecccccccc--------ccCCCCc--cceeecCCC---------CCccccCCCC
Q psy5645 340 ICDVCRS-PDSEEGNEMVFCDCCNICVHQACYGIT--------TIPSGSW--LCRTCVLGK---------RPECILCPNK 399 (525)
Q Consensus 340 ~C~VC~~-~e~ed~N~lv~CD~C~i~VHq~CYgi~--------~iPeg~W--lC~~C~~~~---------~~~C~LCp~~ 399 (525)
.|++|.. +++.+.+.||||.||-.+||+.|.|.. +|-++++ -|++|.-.. .-.|..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 4899975 355566899999999999999999954 4656664 499998641 2479999887
Q ss_pred CCC
Q psy5645 400 GGA 402 (525)
Q Consensus 400 gGa 402 (525)
|-+
T Consensus 81 G~~ 83 (175)
T PF15446_consen 81 GPS 83 (175)
T ss_pred CCC
Confidence 654
No 21
>KOG4299|consensus
Probab=97.07 E-value=0.00017 Score=79.80 Aligned_cols=49 Identities=33% Similarity=0.875 Sum_probs=43.2
Q ss_pred cccccccCCCCCCCCCcEEEccCCCceecccccccc----ccCCCCccceeecCC
Q psy5645 338 NVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGIT----TIPSGSWLCRTCVLG 388 (525)
Q Consensus 338 d~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~----~iPeg~WlC~~C~~~ 388 (525)
.++|+.|.+.+.- |.++.||+|..+|||.|...+ .+|.|.|+|.-|...
T Consensus 253 ~~fCsaCn~~~~F--~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLF--NDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCcccc--ccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 3599999998654 899999999999999999865 489999999999874
No 22
>KOG0825|consensus
Probab=97.00 E-value=0.00027 Score=79.58 Aligned_cols=51 Identities=35% Similarity=0.865 Sum_probs=44.6
Q ss_pred cCcccccccCCCCCCCCCcEEEccCCCce-ecccccccc--ccCCCCccceeecCC
Q psy5645 336 DENVICDVCRSPDSEEGNEMVFCDCCNIC-VHQACYGIT--TIPSGSWLCRTCVLG 388 (525)
Q Consensus 336 ded~~C~VC~~~e~ed~N~lv~CD~C~i~-VHq~CYgi~--~iPeg~WlC~~C~~~ 388 (525)
.+...|.||...+.++ .||.||+||.+ ||.+|+... .+|-+.|+|.-|...
T Consensus 213 ~E~~~C~IC~~~DpEd--VLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDPED--VLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred cccccceeeccCChHH--hheeecccccceeeccccCcccccccccceecCcchhh
Confidence 3457899999987666 99999999999 999999974 489999999999974
No 23
>KOG0390|consensus
Probab=96.80 E-value=0.00067 Score=77.84 Aligned_cols=92 Identities=32% Similarity=0.356 Sum_probs=68.2
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCccccCCCccCCCC--CCCCCCCCCCCceEecCCC----------------------
Q psy5645 8 WENLIRQILAKPFKVPILNYTGSGYSTKALGVRREGA--RKALHDPTAPNALVLYTPP---------------------- 63 (525)
Q Consensus 8 ~e~~i~~~~~k~Fk~P~~~~~~~~~~~~~lg~~~~~~--~~plhDp~~~~AlVl~~P~---------------------- 63 (525)
+...|....++.|..|..+|.........+|++.... .+++|||++..|++.+.|.
T Consensus 96 ~~~~~~~~~s~~~~~~~~~~~~~~~n~~~lg~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~h~~~~~~ 175 (776)
T KOG0390|consen 96 IIGGISGGLSSGKGIPEDLYVDTEGNLVELGVREDDEILGRALFDPLESIAIVDYEPVSNTFEKVHKTKEDCEHSFIWKQ 175 (776)
T ss_pred hhcccccccccccccCccccccccccceecccccccchhhhhhhcchhhcccccCCcccchhhcccchhcccchhhhhhh
Confidence 3567888899999999987754411145788888864 8999999999999999883
Q ss_pred ----------------------------------CcChhhhhccCC-CCceeeEEeCccccccccccCCCceecc
Q psy5645 64 ----------------------------------QLSAHDLLKIDK-DKIQVHVVVDPVLSNIYLTWKTNHQYEI 103 (525)
Q Consensus 64 ----------------------------------~~~~~~~~~~~~-~~~~V~VVVDP~L~~~ld~w~~~~~~~~ 103 (525)
....+..+...+ +...|+||+||.|+++| ++||+++
T Consensus 176 ~ig~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~v~v~~dP~l~~~L----rPHQ~EG 246 (776)
T KOG0390|consen 176 DIGLVCRVCGCVLKEITKSSSDDSTYPLPPGFRSNLCDDSPMVASKDKFSGVHVVIDPLLKKIL----RPHQREG 246 (776)
T ss_pred cccceeeeecccccccccccccccCCCCCCcccccccccccccCCCCcCccceEEecccHhhhc----CchHHHH
Confidence 111122222223 23459999999999999 9999998
No 24
>KOG1084|consensus
Probab=96.74 E-value=0.00069 Score=72.36 Aligned_cols=126 Identities=21% Similarity=0.366 Sum_probs=82.5
Q ss_pred eccccccccccCCC---CccceeecCCCCCccccCCCCCCCCccccCCCcccccccccCCCccEEccCcccccccCCCCc
Q psy5645 365 VHQACYGITTIPSG---SWLCRTCVLGKRPECILCPNKGGAMKCARSGNKWAHVSCALWIPEVSIGCVEKMEPITKISSI 441 (525)
Q Consensus 365 VHq~CYgi~~iPeg---~WlC~~C~~~~~~~C~LCp~~gGalK~t~~g~~WvHv~CAlwipev~f~~~~~~epI~~i~~I 441 (525)
+|+.|+-....-+. .-.|+.|.......|++++..+ ........|+|+.|++|.+.+.+.....+..+. ..+
T Consensus 193 ~~~~c~~~~a~ts~~~~~~~~~~c~~~~e~~~~l~~~~~---~~d~~~~~~~h~~c~~~~~~~~~~q~~~l~~~~--~~v 267 (375)
T KOG1084|consen 193 NCKLCHEPGAPTSQFDPCDIDDDCNRSREFFCALSPKAT---IPDIGFELWYHRYCALWAPNVHESQGGQLTNVD--NAV 267 (375)
T ss_pred ccccccCCCCcccccCCcchhhhhhhhhhhhhhhcCCCc---CCccchhHHHHHHHHhcCCcceeccCccccCch--hhh
Confidence 45666554332221 2346667666666788887543 222123489999999999999887664443331 112
Q ss_pred ccccccccccccCCCCCceeecCCCCCCceeeccchhccCCeEEEEeeccccCCCceEEEcCCCCC
Q psy5645 442 PQSRWALICILCRERLGACIQCSVKTCKTAYHVTCAFKHGLEMRAIIEDENAEDGVKLRSYCQKHS 507 (525)
Q Consensus 442 ~~~r~~l~C~iC~~~~GacIqCs~~~C~~aFHvtCA~~aGl~m~~~~~~~~~~d~~~~~~yC~kHs 507 (525)
...+ .+.|..|.+. |+.+.|....|...+|.+|+...-...- .....++|++|+
T Consensus 268 ~r~~-~~~c~~c~k~-ga~~~c~~~~~~~~~h~~c~~~~~~~~~----------~~~r~v~~~~h~ 321 (375)
T KOG1084|consen 268 IRFP-SLQCILCQKP-GATLKCVQASLLSNAHFPCARAKNGIPL----------DYDRKVSCPRHR 321 (375)
T ss_pred hccc-chhcccccCC-CCchhhhhhhhhcccCcccccCcccccc----------hhhhhccCCCCC
Confidence 2222 3799999986 9999999999999999999976543321 112468899998
No 25
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.32 E-value=0.002 Score=64.79 Aligned_cols=52 Identities=31% Similarity=0.754 Sum_probs=41.7
Q ss_pred cccccCcccccccCCCCCCCCCcEEEccC--CCc-eeccccccccccCCCCccceeecC
Q psy5645 332 GLEFDENVICDVCRSPDSEEGNEMVFCDC--CNI-CVHQACYGITTIPSGSWLCRTCVL 387 (525)
Q Consensus 332 ~~e~ded~~C~VC~~~e~ed~N~lv~CD~--C~i-~VHq~CYgi~~iPeg~WlC~~C~~ 387 (525)
+.++++..+| -|+.. ..++||-||+ |.. =||..|.|+...|.|.|+|.-|+.
T Consensus 215 d~se~e~lYC-fCqqv---SyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 215 DNSEGEELYC-FCQQV---SYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred ccccCceeEE-Eeccc---ccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 3445565555 48887 4579999997 766 499999999999999999999974
No 26
>KOG1973|consensus
Probab=96.23 E-value=0.0025 Score=65.40 Aligned_cols=51 Identities=33% Similarity=0.803 Sum_probs=41.1
Q ss_pred cccCcccccccCCCCCCCCCcEEEccC--CC-ceeccccccccccCCCCccceeecCC
Q psy5645 334 EFDENVICDVCRSPDSEEGNEMVFCDC--CN-ICVHQACYGITTIPSGSWLCRTCVLG 388 (525)
Q Consensus 334 e~ded~~C~VC~~~e~ed~N~lv~CD~--C~-i~VHq~CYgi~~iPeg~WlC~~C~~~ 388 (525)
+.++..+| +|... ..++||-||+ |. -=||..|.|+...|.|.|+|..|...
T Consensus 215 d~~e~~yC-~Cnqv---syg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 215 DPDEPTYC-ICNQV---SYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCCCEEE-Eeccc---ccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 34454555 56633 4579999998 99 88999999999999999999999864
No 27
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.58 E-value=0.046 Score=42.94 Aligned_cols=34 Identities=29% Similarity=0.781 Sum_probs=28.7
Q ss_pred CcccccccCCCCCCCCCcEEEccCCCceecccccc
Q psy5645 337 ENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYG 371 (525)
Q Consensus 337 ed~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYg 371 (525)
+...|.+|.+.- .+++++|+|..|+-.+|..||.
T Consensus 4 ~~~~C~~Cg~~~-~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKF-KDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcc-cCCCCEEECCCCCCcccHHHHh
Confidence 346899999863 3457999999999999999994
No 28
>KOG0383|consensus
Probab=93.31 E-value=0.032 Score=63.83 Aligned_cols=48 Identities=29% Similarity=0.845 Sum_probs=40.0
Q ss_pred ccCcccccccCCCCCCCCCcEEEccCCCceecccccccc--ccCCCCccceeecC
Q psy5645 335 FDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGIT--TIPSGSWLCRTCVL 387 (525)
Q Consensus 335 ~ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~--~iPeg~WlC~~C~~ 387 (525)
+.+...|.||.++ +.++.||.|...||..|.+.+ .+|.+.|+|.+|..
T Consensus 44 ~~~~e~c~ic~~~-----g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 44 DAEQEACRICADG-----GELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred hhhhhhhhhhcCC-----CcEEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 3445689999986 689999999999999999865 46778899999944
No 29
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4443|consensus
Probab=92.67 E-value=0.059 Score=60.59 Aligned_cols=54 Identities=26% Similarity=0.831 Sum_probs=43.2
Q ss_pred cccccCcccccccCCCCCCCCCcEEEccCCCceeccccccc--cccCCCCccceeecC
Q psy5645 332 GLEFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGI--TTIPSGSWLCRTCVL 387 (525)
Q Consensus 332 ~~e~ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi--~~iPeg~WlC~~C~~ 387 (525)
++..-+..+|-.|+- ..+.+.+++|++|.++||-+|.-. .+|+.|.|+|+.|..
T Consensus 62 gWrC~~crvCe~c~~--~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 62 GWRCPSCRVCEACGT--TGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred CcccCCceeeeeccc--cCCcccccccccccccccccccCCccccccCcccccHHHHh
Confidence 355566678888883 356679999999999999999765 369999999998865
No 31
>KOG1245|consensus
Probab=92.58 E-value=0.027 Score=69.02 Aligned_cols=61 Identities=28% Similarity=0.713 Sum_probs=49.2
Q ss_pred cccccccCCCCCCCCCcEEEccCCCceeccccccc--cccCCCCccceeecCCC--CCccccCCCCC
Q psy5645 338 NVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGI--TTIPSGSWLCRTCVLGK--RPECILCPNKG 400 (525)
Q Consensus 338 d~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi--~~iPeg~WlC~~C~~~~--~~~C~LCp~~g 400 (525)
...|-||+.... .+.|+.|+.|+.+||..|.-. ..+|.|+|+|..|.... ...+..+....
T Consensus 1108 ~~~c~~cr~k~~--~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~~rr~~~~~~~~~ 1172 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQ--DEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHRARRQKRFRKEDL 1172 (1404)
T ss_pred hhhhhhhhhccc--chhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhhhhhhhhhhcccc
Confidence 468999998743 359999999999999999984 56899999999999874 45566665443
No 32
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=91.77 E-value=0.15 Score=38.51 Aligned_cols=30 Identities=33% Similarity=0.767 Sum_probs=24.7
Q ss_pred cccccCCC--CCceeecCCCCCCceeeccchhcc
Q psy5645 449 ICILCRER--LGACIQCSVKTCKTAYHVTCAFKH 480 (525)
Q Consensus 449 ~C~iC~~~--~GacIqCs~~~C~~aFHvtCA~~a 480 (525)
+|.+|++. .+.+|+|+ .|.++||..|....
T Consensus 1 ~C~vC~~~~~~~~~i~C~--~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD--SCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS--TTSCEEETTTSTSS
T ss_pred eCcCCCCcCCCCCeEEcC--CCChhhCcccCCCC
Confidence 48888874 47799999 89999999998543
No 33
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=90.96 E-value=0.11 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.865 Sum_probs=22.0
Q ss_pred eeccccccc--cccCCCCccceeecCC
Q psy5645 364 CVHQACYGI--TTIPSGSWLCRTCVLG 388 (525)
Q Consensus 364 ~VHq~CYgi--~~iPeg~WlC~~C~~~ 388 (525)
++|..|+.. ..+|+|+|+|..|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 589999985 4699999999999975
No 34
>KOG1473|consensus
Probab=90.39 E-value=0.49 Score=56.34 Aligned_cols=111 Identities=23% Similarity=0.493 Sum_probs=72.2
Q ss_pred ccccCcccccccCCCCCCCCCcEEEccCCCceecccccccc--ccCCCCccceeecCCC---CCccccCCCCCCCCcccc
Q psy5645 333 LEFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGIT--TIPSGSWLCRTCVLGK---RPECILCPNKGGAMKCAR 407 (525)
Q Consensus 333 ~e~ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~--~iPeg~WlC~~C~~~~---~~~C~LCp~~gGalK~t~ 407 (525)
++++ +.|.+|.+. +.++.|..|..-||..|.--+ .+|+..|-|..|..-+ -..|+|=+.+.+...+..
T Consensus 341 ~~~d--dhcrf~~d~-----~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~ 413 (1414)
T KOG1473|consen 341 IEYD--DHCRFCHDL-----GDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHT 413 (1414)
T ss_pred eeec--ccccccCcc-----cceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceecc
Confidence 4555 589999975 899999999999999997754 4789999999888642 234666555444332221
Q ss_pred CCCcccccccccCCCccEEccCcccccccCCCCcccccc--cccccccCCCCCceeecCCCCCCceeec-cchhc
Q psy5645 408 SGNKWAHVSCALWIPEVSIGCVEKMEPITKISSIPQSRW--ALICILCRERLGACIQCSVKTCKTAYHV-TCAFK 479 (525)
Q Consensus 408 ~g~~WvHv~CAlwipev~f~~~~~~epI~~i~~I~~~r~--~l~C~iC~~~~GacIqCs~~~C~~aFHv-tCA~~ 479 (525)
.+ |....-+.-| .-.|.||+.. |..+ |.+..|.+.||. .|.=+
T Consensus 414 ~i---------------------------G~dr~gr~ywfi~rrl~Ie~~d-et~l-~yysT~pqly~ll~cLd~ 459 (1414)
T KOG1473|consen 414 PI---------------------------GRDRYGRKYWFISRRLRIEGMD-ETLL-WYYSTCPQLYHLLRCLDR 459 (1414)
T ss_pred CC---------------------------CcCccccchhceeeeeEEecCC-CcEE-EEecCcHHHHHHHHHhch
Confidence 11 1111111112 2369999964 5444 445689999999 88743
No 35
>KOG1244|consensus
Probab=89.35 E-value=0.17 Score=51.72 Aligned_cols=77 Identities=25% Similarity=0.603 Sum_probs=56.7
Q ss_pred cccccccCCCCCCC-----CCcEEEccCCCceeccccccccc-----cCCCCccceeecCCCCCccccCCCCCC--CCcc
Q psy5645 338 NVICDVCRSPDSEE-----GNEMVFCDCCNICVHQACYGITT-----IPSGSWLCRTCVLGKRPECILCPNKGG--AMKC 405 (525)
Q Consensus 338 d~~C~VC~~~e~ed-----~N~lv~CD~C~i~VHq~CYgi~~-----iPeg~WlC~~C~~~~~~~C~LCp~~gG--alK~ 405 (525)
..+|+.|++..-++ ..+||-|..|++.-|.+|+.... +-.-.|-|.-|++ |.+|+.... .|..
T Consensus 224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~-----csicgtsenddqllf 298 (336)
T KOG1244|consen 224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY-----CSICGTSENDDQLLF 298 (336)
T ss_pred CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce-----eccccCcCCCceeEe
Confidence 35899999865332 24899999999999999998642 3455799999987 999986532 3444
Q ss_pred ccCCCccccccccc
Q psy5645 406 ARSGNKWAHVSCAL 419 (525)
Q Consensus 406 t~~g~~WvHv~CAl 419 (525)
.++-.+-+|+.|.-
T Consensus 299 cddcdrgyhmycls 312 (336)
T KOG1244|consen 299 CDDCDRGYHMYCLS 312 (336)
T ss_pred ecccCCceeeEecC
Confidence 44444668999963
No 36
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=85.88 E-value=1.1 Score=40.28 Aligned_cols=51 Identities=25% Similarity=0.503 Sum_probs=38.2
Q ss_pred CcccccccCCCCCCCCCcEEEccCCCceeccccccccccCCCCccceeecCC
Q psy5645 337 ENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLG 388 (525)
Q Consensus 337 ed~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~ 388 (525)
.+..|..|...-.--+|.=..|..|...|-+.| ++..-.++.|+|..|...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C-~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKC-GVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTS-EEETSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCcc-CCcCCCCCCEEChhhHHH
Confidence 457999998865555566699999999999999 444445778999999763
No 37
>KOG1512|consensus
Probab=85.71 E-value=0.4 Score=49.42 Aligned_cols=58 Identities=19% Similarity=0.468 Sum_probs=45.2
Q ss_pred CcccccccCCCCCC----CCCcEEEccCCCceeccccccccc-----cCCCCccceeecCCCCCccccCCCC
Q psy5645 337 ENVICDVCRSPDSE----EGNEMVFCDCCNICVHQACYGITT-----IPSGSWLCRTCVLGKRPECILCPNK 399 (525)
Q Consensus 337 ed~~C~VC~~~e~e----d~N~lv~CD~C~i~VHq~CYgi~~-----iPeg~WlC~~C~~~~~~~C~LCp~~ 399 (525)
....|.+|.++... ..|.|+.|.-|..+.|..|..... +-.-.|.|-.|.. |.+|...
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l-----C~IC~~P 323 (381)
T KOG1512|consen 257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL-----CRICLGP 323 (381)
T ss_pred chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh-----hhccCCc
Confidence 45689999988643 237999999999999999988642 3345799999976 8888753
No 38
>KOG1044|consensus
Probab=83.24 E-value=0.55 Score=52.48 Aligned_cols=89 Identities=28% Similarity=0.541 Sum_probs=49.0
Q ss_pred ccceeecCCC---------CCccccCCC---CCCCCccccCCCcccccccccCCCccEEccCcccccccCCCCcc-----
Q psy5645 380 WLCRTCVLGK---------RPECILCPN---KGGAMKCARSGNKWAHVSCALWIPEVSIGCVEKMEPITKISSIP----- 442 (525)
Q Consensus 380 WlC~~C~~~~---------~~~C~LCp~---~gGalK~t~~g~~WvHv~CAlwipev~f~~~~~~epI~~i~~I~----- 442 (525)
-+|..|.... ...|.-|.. .|+++.... .+| |+.|..--..-.+-+.+.|. -..+|
T Consensus 114 ~~c~~c~~~~~~~p~~~~~ps~cagc~~~lk~gq~llald--~qw-hv~cfkc~~c~~vL~gey~s----kdg~pyce~d 186 (670)
T KOG1044|consen 114 CLCQTCSQPMPVSPAESYGPSTCAGCGEELKNGQALLALD--KQW-HVSCFKCKSCSAVLNGEYMS----KDGVPYCEKD 186 (670)
T ss_pred hhhhhhcCcccCCcccccCCccccchhhhhhccceeeeec--cce-eeeeeehhhhcccccceeec----cCCCcchhhh
Confidence 5677787742 346888874 466666553 367 66665332222222333331 11222
Q ss_pred -cccccccccccCCC-CCceeecCCCCCCceeeccchhc
Q psy5645 443 -QSRWALICILCRER-LGACIQCSVKTCKTAYHVTCAFK 479 (525)
Q Consensus 443 -~~r~~l~C~iC~~~-~GacIqCs~~~C~~aFHvtCA~~ 479 (525)
...+..+|..|.+- .|..+|=. ...||++||+=
T Consensus 187 y~~~fgvkc~~c~~fisgkvLqag----~kh~HPtCARC 221 (670)
T KOG1044|consen 187 YQAKFGVKCEECEKFISGKVLQAG----DKHFHPTCARC 221 (670)
T ss_pred hhhhcCeehHHhhhhhhhhhhhcc----CcccCcchhhh
Confidence 23455678877653 35555543 27899999963
No 39
>KOG1973|consensus
Probab=81.70 E-value=0.77 Score=47.26 Aligned_cols=33 Identities=33% Similarity=0.710 Sum_probs=26.3
Q ss_pred ccccccCCCCCceeecCCCCCC-ceeeccchhccCCe
Q psy5645 448 LICILCRERLGACIQCSVKTCK-TAYHVTCAFKHGLE 483 (525)
Q Consensus 448 l~C~iC~~~~GacIqCs~~~C~-~aFHvtCA~~aGl~ 483 (525)
.+|.-....+|.+|.|+..+|. .+||.+|. ||.
T Consensus 220 ~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV---GL~ 253 (274)
T KOG1973|consen 220 TYCICNQVSYGKMIGCDNPGCPIEWFHFTCV---GLK 253 (274)
T ss_pred EEEEecccccccccccCCCCCCcceEEEecc---ccc
Confidence 4554445568999999999999 99999994 655
No 40
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=80.07 E-value=1.7 Score=32.98 Aligned_cols=37 Identities=24% Similarity=0.538 Sum_probs=27.5
Q ss_pred cCcccccccCCCCCCCCCcEEEccCCCceeccccccc
Q psy5645 336 DENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGI 372 (525)
Q Consensus 336 ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi 372 (525)
.....|++|...=......-+.|..|++.+|..|...
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 3446899999864334568899999999999999764
No 41
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=79.44 E-value=3.9 Score=35.00 Aligned_cols=39 Identities=26% Similarity=0.499 Sum_probs=26.4
Q ss_pred CCcccccCcccccccCCCCCCCCCcEEEccCCCceecccccc
Q psy5645 330 GLGLEFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYG 371 (525)
Q Consensus 330 ~~~~e~ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYg 371 (525)
...+..+++..|.||...=. |..+.---||..||..|+.
T Consensus 70 ~~~v~i~~~~~C~vC~k~l~---~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 70 SRSVVITESTKCSVCGKPLG---NSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CceEEECCCCCccCcCCcCC---CceEEEeCCCeEEeccccc
Confidence 33456778889999998743 2333233556999999963
No 42
>KOG0957|consensus
Probab=74.44 E-value=1.2 Score=49.22 Aligned_cols=47 Identities=26% Similarity=0.820 Sum_probs=36.9
Q ss_pred cccccccCCCCCCCCCcEEEccCCCceecccccccc--ccCCC----Cccceeec
Q psy5645 338 NVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGIT--TIPSG----SWLCRTCV 386 (525)
Q Consensus 338 d~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~--~iPeg----~WlC~~C~ 386 (525)
...|-||... .+-..++.||.|++.||.-|+..+ .+|.. .|.|.-|-
T Consensus 544 ~ysCgiCkks--~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 544 NYSCGICKKS--TDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ceeeeeeccc--hhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 3569999986 344589999999999999999964 35543 49999993
No 43
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=73.83 E-value=1.5 Score=29.89 Aligned_cols=28 Identities=29% Similarity=0.749 Sum_probs=12.3
Q ss_pred cccccCCCCCCCCCcEEEccCCCceecccc
Q psy5645 340 ICDVCRSPDSEEGNEMVFCDCCNICVHQAC 369 (525)
Q Consensus 340 ~C~VC~~~e~ed~N~lv~CD~C~i~VHq~C 369 (525)
.|++|...-.. +....|..|+..+|..|
T Consensus 2 ~C~~C~~~~~~--~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG--GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S----EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC--CceEECccCCCccChhc
Confidence 58999986332 47889999999999988
No 44
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=73.65 E-value=2.1 Score=31.71 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=26.9
Q ss_pred cccccccCCCCCCCCCcEEEccCCCceeccccccc
Q psy5645 338 NVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGI 372 (525)
Q Consensus 338 d~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi 372 (525)
...|++|...-..-...-+.|+.|++.+|..|..-
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 46899998764322247788999999999999763
No 45
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=73.63 E-value=2.6 Score=41.49 Aligned_cols=43 Identities=28% Similarity=0.684 Sum_probs=33.6
Q ss_pred cccccccCCCCC---CCCCcEEEccCCCceeccccccccccCCCCccceeecC
Q psy5645 338 NVICDVCRSPDS---EEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVL 387 (525)
Q Consensus 338 d~~C~VC~~~e~---ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~ 387 (525)
..+|.+|.+.+- -+.+..+.|.+|+..+|+.|+.- --|.+|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcHh
Confidence 358999998752 34468899999999999999873 12888865
No 46
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=71.88 E-value=2.7 Score=46.05 Aligned_cols=48 Identities=23% Similarity=0.592 Sum_probs=34.8
Q ss_pred cccccCCCCCCCCC-cEEEccCCCceeccccccccc--------------cCCCCccceeecCC
Q psy5645 340 ICDVCRSPDSEEGN-EMVFCDCCNICVHQACYGITT--------------IPSGSWLCRTCVLG 388 (525)
Q Consensus 340 ~C~VC~~~e~ed~N-~lv~CD~C~i~VHq~CYgi~~--------------iPeg~WlC~~C~~~ 388 (525)
-|.||...+...+. -.|.||.|+-..|..|. +.. ..++.+.|+.|-..
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCA-Lr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCA-LRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhh-cccccccCCccCCCCCccCceEEEccCCCCh
Confidence 37788887655433 78999999999999994 221 12557889888764
No 47
>KOG0383|consensus
Probab=71.71 E-value=2.5 Score=48.92 Aligned_cols=77 Identities=19% Similarity=0.402 Sum_probs=51.7
Q ss_pred CCCceeccccccc--cccCCCCccceeecCCCCCccccCCCCCCCCccccCCCcccccccccCCCccEEccCcccccccC
Q psy5645 360 CCNICVHQACYGI--TTIPSGSWLCRTCVLGKRPECILCPNKGGAMKCARSGNKWAHVSCALWIPEVSIGCVEKMEPITK 437 (525)
Q Consensus 360 ~C~i~VHq~CYgi--~~iPeg~WlC~~C~~~~~~~C~LCp~~gGalK~t~~g~~WvHv~CAlwipev~f~~~~~~epI~~ 437 (525)
.|.+.+|..|... ..-|++.|.|+.|..+.. --...++.
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~------------~~~~~~~~--------------------------- 41 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSA------------QVEAKDDD--------------------------- 41 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhccc------------ccccccCC---------------------------
Confidence 4888999999873 235689999999976421 00000010
Q ss_pred CCCcccccccccccccCCCCCceeecCCCCCCceeeccchhccCC
Q psy5645 438 ISSIPQSRWALICILCRERLGACIQCSVKTCKTAYHVTCAFKHGL 482 (525)
Q Consensus 438 i~~I~~~r~~l~C~iC~~~~GacIqCs~~~C~~aFHvtCA~~aGl 482 (525)
........|.+|+.. |..|-|+ .|..+||..|.-..+.
T Consensus 42 ----~~~~~~e~c~ic~~~-g~~l~c~--tC~~s~h~~cl~~pl~ 79 (696)
T KOG0383|consen 42 ----WDDAEQEACRICADG-GELLWCD--TCPASFHASCLGPPLT 79 (696)
T ss_pred ----cchhhhhhhhhhcCC-CcEEEec--cccHHHHHHccCCCCC
Confidence 011123579999975 8888898 8999999999855543
No 48
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=69.67 E-value=2.2 Score=34.96 Aligned_cols=33 Identities=27% Similarity=0.632 Sum_probs=13.9
Q ss_pred ccccccCCCCCCCC-CcEEEcc--CCCceecccccc
Q psy5645 339 VICDVCRSPDSEEG-NEMVFCD--CCNICVHQACYG 371 (525)
Q Consensus 339 ~~C~VC~~~e~ed~-N~lv~CD--~C~i~VHq~CYg 371 (525)
..|.||.....+++ -..+.|+ .|+..+|..|+.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 57999998755232 3668998 899999999987
No 49
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=69.18 E-value=1 Score=37.96 Aligned_cols=49 Identities=29% Similarity=0.698 Sum_probs=25.1
Q ss_pred cccccccCCCC--CCCCCcEEEccCCCceeccccccccccCCCCccceeecC
Q psy5645 338 NVICDVCRSPD--SEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVL 387 (525)
Q Consensus 338 d~~C~VC~~~e--~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~ 387 (525)
..+|.||.+.- .++++..+-|..|+..|-..||.. ...+|.-.|.+|..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY-Erkeg~q~CpqCkt 59 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY-ERKEGNQVCPQCKT 59 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH-HHHTS-SB-TTT--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHH-HhhcCcccccccCC
Confidence 46899999864 467789999999999999999986 34577778888874
No 50
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=68.69 E-value=1.3 Score=37.68 Aligned_cols=32 Identities=31% Similarity=1.065 Sum_probs=26.4
Q ss_pred ccccccCCC-CCceeecCC------------CCCCceeeccchhc
Q psy5645 448 LICILCRER-LGACIQCSV------------KTCKTAYHVTCAFK 479 (525)
Q Consensus 448 l~C~iC~~~-~GacIqCs~------------~~C~~aFHvtCA~~ 479 (525)
..|.||+.. .|.|++|-. .-|.-+||..|..+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~r 65 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYR 65 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHH
Confidence 379999976 688999986 36889999999865
No 51
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=65.72 E-value=2.6 Score=30.84 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=26.0
Q ss_pred CcccccccCCCCCCCCCcEEEccCCCceecccccc
Q psy5645 337 ENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYG 371 (525)
Q Consensus 337 ed~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYg 371 (525)
....|.+|...-..-. .-+.|..|++.+|..|..
T Consensus 10 ~~~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 10 KPTKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCCccccccccCcCC-CCcCCCCCCchHHHHHHh
Confidence 3468999998643221 468999999999999965
No 52
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=65.11 E-value=6.1 Score=27.08 Aligned_cols=27 Identities=33% Similarity=0.775 Sum_probs=21.5
Q ss_pred cccccCCCCCCCCCc-EEEccCCCceecccc
Q psy5645 340 ICDVCRSPDSEEGNE-MVFCDCCNICVHQAC 369 (525)
Q Consensus 340 ~C~VC~~~e~ed~N~-lv~CD~C~i~VHq~C 369 (525)
.|+||+..- ++. ...|+.|+..+|..|
T Consensus 2 ~C~~C~~~~---~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI---DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc---CCCEeEEeCCCCCeEcCcc
Confidence 599997642 233 889999999999988
No 53
>KOG4443|consensus
Probab=64.21 E-value=3.5 Score=46.92 Aligned_cols=56 Identities=25% Similarity=0.709 Sum_probs=43.0
Q ss_pred ccccccCCCCCCCCCcEEEccCCCceecccccccc--c-cCCCCccceeecCCCCCccccCCCC
Q psy5645 339 VICDVCRSPDSEEGNEMVFCDCCNICVHQACYGIT--T-IPSGSWLCRTCVLGKRPECILCPNK 399 (525)
Q Consensus 339 ~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~--~-iPeg~WlC~~C~~~~~~~C~LCp~~ 399 (525)
..|-+|......-.+.|+-|..|+..+|..|..+- . +-.+.|.|..|.. |.-|...
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv-----Ce~c~~~ 77 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV-----CEACGTT 77 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee-----eeecccc
Confidence 46777877767777899999999999999998842 1 2244599999976 7777743
No 54
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=63.84 E-value=3.9 Score=30.53 Aligned_cols=30 Identities=30% Similarity=0.658 Sum_probs=16.1
Q ss_pred ccccCCCCCceeecCCCCCCceeeccchhc
Q psy5645 450 CILCRERLGACIQCSVKTCKTAYHVTCAFK 479 (525)
Q Consensus 450 C~iC~~~~GacIqCs~~~C~~aFHvtCA~~ 479 (525)
|.+|++-.-.-+.|...+|...+|..|+..
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~ 30 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKK 30 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHH
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHH
Confidence 677876544457899999999999999853
No 55
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=57.58 E-value=9.6 Score=26.10 Aligned_cols=27 Identities=41% Similarity=0.874 Sum_probs=21.6
Q ss_pred cccccCCC-CCc-eeecCCCCCCceeeccch
Q psy5645 449 ICILCRER-LGA-CIQCSVKTCKTAYHVTCA 477 (525)
Q Consensus 449 ~C~iC~~~-~Ga-cIqCs~~~C~~aFHvtCA 477 (525)
.|.+|++. .|. .-.|. .|...+|+.||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~--~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCS--ECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeC--CCCCeEcCccC
Confidence 58899876 455 67895 67799999997
No 56
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=56.91 E-value=7.5 Score=30.71 Aligned_cols=36 Identities=25% Similarity=0.563 Sum_probs=30.4
Q ss_pred ccccccCCC---CCceeecCCCCCCceeeccchhccCCeEE
Q psy5645 448 LICILCRER---LGACIQCSVKTCKTAYHVTCAFKHGLEMR 485 (525)
Q Consensus 448 l~C~iC~~~---~GacIqCs~~~C~~aFHvtCA~~aGl~m~ 485 (525)
.+|.+|+.+ .+..+.|- .|.+.||-.|+...|-...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp--~CgapyHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCP--ECGAPYHRDCWEKAGGCIN 44 (54)
T ss_pred ccChhhCCcccCCCCEEECC--CCCCcccHHHHhhCCceEe
Confidence 479999987 36789997 8999999999988886644
No 57
>KOG4299|consensus
Probab=56.13 E-value=3.8 Score=46.39 Aligned_cols=29 Identities=31% Similarity=0.759 Sum_probs=25.3
Q ss_pred cccccCCCCCce---eecCCCCCCceeeccchhcc
Q psy5645 449 ICILCRERLGAC---IQCSVKTCKTAYHVTCAFKH 480 (525)
Q Consensus 449 ~C~iC~~~~Gac---IqCs~~~C~~aFHvtCA~~a 480 (525)
+|..|+++ |.. |+|. .|.+.||.+|.-..
T Consensus 255 fCsaCn~~-~~F~~~i~CD--~Cp~sFH~~CLePP 286 (613)
T KOG4299|consen 255 FCSACNGS-GLFNDIICCD--GCPRSFHQTCLEPP 286 (613)
T ss_pred HHHHhCCc-cccccceeec--CCchHHHHhhcCCC
Confidence 89999987 777 9999 59999999998653
No 58
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=55.69 E-value=6.1 Score=26.91 Aligned_cols=27 Identities=30% Similarity=0.682 Sum_probs=12.1
Q ss_pred cccccCCCCC--ceeecCCCCCCceeeccch
Q psy5645 449 ICILCRERLG--ACIQCSVKTCKTAYHVTCA 477 (525)
Q Consensus 449 ~C~iC~~~~G--acIqCs~~~C~~aFHvtCA 477 (525)
.|.+|+...+ ....|. .|.-.+|..||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~--~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCS--ECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-T--TT-----HHHH
T ss_pred cCCcCCCcCCCCceEECc--cCCCccChhcC
Confidence 5899998744 567887 79999999997
No 59
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=54.86 E-value=12 Score=41.64 Aligned_cols=51 Identities=22% Similarity=0.570 Sum_probs=36.0
Q ss_pred CcEEEccCCCceeccccccccccCCCCccceeecCCC------------CCccccCCCCCCCCccc
Q psy5645 353 NEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLGK------------RPECILCPNKGGAMKCA 406 (525)
Q Consensus 353 N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~~------------~~~C~LCp~~gGalK~t 406 (525)
..|.||..|..--...|... .-..|+|..|.... ...|.-||.=.+.|..+
T Consensus 3 ~~L~fC~~C~~irc~~c~~~---Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~~ 65 (483)
T PF05502_consen 3 EELYFCEHCHKIRCPRCVSE---EIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSVR 65 (483)
T ss_pred ccceecccccccCChhhccc---ccceeECccccccCChhhheeccceeccccccCCCCCCcceeE
Confidence 36889999998887777544 23579999998742 13788888766655443
No 60
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.17 E-value=9.3 Score=38.85 Aligned_cols=57 Identities=23% Similarity=0.480 Sum_probs=39.8
Q ss_pred HHHHHhccchhhhhhhhhcccCCcccccCcccccccCCCCC-------CCCCcEEEccCCCcee
Q psy5645 309 MIAELEVRCWDKVQTIIKEEEGLGLEFDENVICDVCRSPDS-------EEGNEMVFCDCCNICV 365 (525)
Q Consensus 309 ~i~~lE~~~~~~~~~~~~~~~~~~~e~ded~~C~VC~~~e~-------ed~N~lv~CD~C~i~V 365 (525)
+...|..+.++....+.+...|.|+..-.+..|.-|+..=. -.+|.+|+|..||.-.
T Consensus 168 L~~~l~~ell~~yeri~~~~kg~gvvpl~g~~C~GC~m~l~~~~~~~V~~~d~iv~CP~CgRIL 231 (239)
T COG1579 168 LKEKLDPELLSEYERIRKNKKGVGVVPLEGRVCGGCHMKLPSQTLSKVRKKDEIVFCPYCGRIL 231 (239)
T ss_pred HHHhcCHHHHHHHHHHHhcCCCceEEeecCCcccCCeeeecHHHHHHHhcCCCCccCCccchHH
Confidence 33344445555556666666688888888899999997421 2468999999999743
No 61
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=53.52 E-value=6.8 Score=40.04 Aligned_cols=30 Identities=30% Similarity=0.944 Sum_probs=24.5
Q ss_pred cccccccCC-CCCceeecCCCCCC-ceeeccch
Q psy5645 447 ALICILCRE-RLGACIQCSVKTCK-TAYHVTCA 477 (525)
Q Consensus 447 ~l~C~iC~~-~~GacIqCs~~~C~-~aFHvtCA 477 (525)
.++| +|++ ..|.+|.|+..+|. -+||..|.
T Consensus 221 ~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CV 252 (271)
T COG5034 221 ELYC-FCQQVSYGQMVACDNANCKREWFHLECV 252 (271)
T ss_pred eeEE-EecccccccceecCCCCCchhheecccc
Confidence 4566 5665 47999999999995 69999995
No 62
>PLN02400 cellulose synthase
Probab=52.64 E-value=11 Score=45.62 Aligned_cols=51 Identities=27% Similarity=0.668 Sum_probs=42.7
Q ss_pred CcccccccCCCC--CCCCCcEEEccCCCceeccccccccccCCCCccceeecCC
Q psy5645 337 ENVICDVCRSPD--SEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLG 388 (525)
Q Consensus 337 ed~~C~VC~~~e--~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~ 388 (525)
...+|.||.+.- ..+++..|-|.-|+-.|-..||.- ..-+|.=.|.+|+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTr 87 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTR 87 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCc
Confidence 346999999864 467789999999999999999954 567899999999875
No 63
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=51.62 E-value=8.4 Score=31.57 Aligned_cols=32 Identities=25% Similarity=0.660 Sum_probs=13.7
Q ss_pred ccccccCCCC---C--ceeecCCCCCCceeeccchhc
Q psy5645 448 LICILCRERL---G--ACIQCSVKTCKTAYHVTCAFK 479 (525)
Q Consensus 448 l~C~iC~~~~---G--acIqCs~~~C~~aFHvtCA~~ 479 (525)
..|.||.... + .-+-|.+..|...||..|-..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 4699998642 2 247999999999999999854
No 64
>PLN02436 cellulose synthase A
Probab=51.28 E-value=10 Score=45.86 Aligned_cols=50 Identities=24% Similarity=0.617 Sum_probs=42.1
Q ss_pred cccccccCCCC--CCCCCcEEEccCCCceeccccccccccCCCCccceeecCC
Q psy5645 338 NVICDVCRSPD--SEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLG 388 (525)
Q Consensus 338 d~~C~VC~~~e--~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~ 388 (525)
..+|.||.+.- ..+++..|-|.-|+-.|-..||.- ...+|+=.|.+|...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey-er~eg~~~Cpqckt~ 87 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY-ERREGNQACPQCKTR 87 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCc
Confidence 46999999864 467789999999999999999943 567899999999874
No 65
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=50.90 E-value=9.8 Score=46.00 Aligned_cols=50 Identities=26% Similarity=0.679 Sum_probs=42.0
Q ss_pred cccccccCCCC--CCCCCcEEEccCCCceeccccccccccCCCCccceeecCC
Q psy5645 338 NVICDVCRSPD--SEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLG 388 (525)
Q Consensus 338 d~~C~VC~~~e--~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~ 388 (525)
..+|.||++.- ..+++..|-|.-|+-.|-..||.- ..-||+=.|.+|...
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY-Er~eG~q~CPqCktr 68 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY-ERKDGNQSCPQCKTK 68 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCc
Confidence 46999999864 457779999999999999999943 567899999999874
No 66
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=50.46 E-value=15 Score=40.46 Aligned_cols=14 Identities=36% Similarity=0.893 Sum_probs=11.3
Q ss_pred cccccccccCCCcc
Q psy5645 411 KWAHVSCALWIPEV 424 (525)
Q Consensus 411 ~WvHv~CAlwipev 424 (525)
+|+|.-|||-..-+
T Consensus 154 H~cH~dCALr~~~i 167 (446)
T PF07227_consen 154 HWCHLDCALRHELI 167 (446)
T ss_pred ceehhhhhcccccc
Confidence 89999999976433
No 67
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=49.14 E-value=16 Score=32.79 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.7
Q ss_pred chhhHHHHHHHhHHHHhcCCCcCCcc
Q psy5645 146 DDCDIAWLNILNGERACMGIMYNTQD 171 (525)
Q Consensus 146 d~~d~~wl~~~n~e~~~~g~~~~de~ 171 (525)
-+.....|+++|.+|++.|+|||.-+
T Consensus 2 ~~~e~~~l~~iN~~R~~~Gl~pL~~~ 27 (127)
T TIGR02909 2 TAEEKRVVELVNAERAKNGLKPLKAD 27 (127)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCccC
Confidence 34566789999999999999999653
No 68
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=49.04 E-value=8.9 Score=32.75 Aligned_cols=31 Identities=26% Similarity=0.607 Sum_probs=21.3
Q ss_pred ccccccCCCCCceeecCCCCCCceeeccchhc
Q psy5645 448 LICILCRERLGACIQCSVKTCKTAYHVTCAFK 479 (525)
Q Consensus 448 l~C~iC~~~~GacIqCs~~~C~~aFHvtCA~~ 479 (525)
..|.+|+++.|.-. ...-.|...||..|+.+
T Consensus 79 ~~C~vC~k~l~~~~-f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 79 TKCSVCGKPLGNSV-FVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCccCcCCcCCCce-EEEeCCCeEEecccccC
Confidence 46999999865422 22225669999999853
No 69
>PLN02189 cellulose synthase
Probab=48.44 E-value=12 Score=45.05 Aligned_cols=51 Identities=24% Similarity=0.642 Sum_probs=42.2
Q ss_pred CcccccccCCCCC--CCCCcEEEccCCCceeccccccccccCCCCccceeecCC
Q psy5645 337 ENVICDVCRSPDS--EEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLG 388 (525)
Q Consensus 337 ed~~C~VC~~~e~--ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~ 388 (525)
...+|.||.+.-. .+++..|-|.-|+-.|-..||.- ...+|+=.|.+|...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey-er~eg~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY-ERREGTQNCPQCKTR 85 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCc
Confidence 3469999998744 67779999999999999999943 567888899999874
No 70
>PHA02862 5L protein; Provisional
Probab=47.44 E-value=6.4 Score=37.13 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=25.2
Q ss_pred ccccccCCCCCCCCCcEEEccCCCceecccccc
Q psy5645 339 VICDVCRSPDSEEGNEMVFCDCCNICVHQACYG 371 (525)
Q Consensus 339 ~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYg 371 (525)
+.|-||++.+.++ +.-=.|.|-..-|||.|..
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~ 34 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQ 34 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHH
Confidence 5899999986444 4445677889999999976
No 71
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=47.05 E-value=6.4 Score=30.11 Aligned_cols=31 Identities=35% Similarity=0.799 Sum_probs=19.9
Q ss_pred cccccCCCCCCCCCcEE-Ecc--CCCceecccccc
Q psy5645 340 ICDVCRSPDSEEGNEMV-FCD--CCNICVHQACYG 371 (525)
Q Consensus 340 ~C~VC~~~e~ed~N~lv-~CD--~C~i~VHq~CYg 371 (525)
+|.||++. .++++.++ -|. |-...||+.|..
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~ 34 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLE 34 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHH
Confidence 58999983 33445554 333 223679999976
No 72
>PF10621 FpoO: F420H2 dehydrogenase subunit FpoO ; InterPro: IPR018288 This entry represents the FpoO subunit of membrane-bound multi-subunit F420H2 dehydrogenase, which oxidises the reduced coenzyme F420H2 to coenzyme F420 and feeds the electrons via an FeS cluster into an energy-conserving electron transport chain [, ]. This enzyme plays a role in the methanogenic pathway in methanogenic archaea. Reduced coenzyme F420H2 is the major cytoplasmic electron carrier of methanogens and a reversible hydride donor, much like NADH []. F420H2 + COB-S-S-CoM = F420 + CoM-SH + CoB-SH Where CoB-S-S-CoM (the heterosulphide of 2-mercaptoethanesulphonate and 7-mercaptoheptanoylthreonine phosphate) is the terminal electron acceptor of the methanogenic pathway, and is reduced with the concomitant generation of a transmembrane proton potential and ATP synthesis. The FpoO subunit of F420H2 dehydrogenase probably participates in the reduction of methanophenazine, where it acts as a special mechanism for the reduction of the methanogenic cofactor [].
Probab=46.95 E-value=4.4 Score=36.40 Aligned_cols=46 Identities=33% Similarity=0.821 Sum_probs=31.7
Q ss_pred EccCCCceecccccccc--------ccCCCCc--cceeecCC---------------CCCccccCCCCCCCC
Q psy5645 357 FCDCCNICVHQACYGIT--------TIPSGSW--LCRTCVLG---------------KRPECILCPNKGGAM 403 (525)
Q Consensus 357 ~CD~C~i~VHq~CYgi~--------~iPeg~W--lC~~C~~~---------------~~~~C~LCp~~gGal 403 (525)
-||-|+++.-..|- +. .-|+|-| +|+.|..+ ..-+|.||+.+++.+
T Consensus 3 DCdLCg~~~Pt~~P-vrV~~Pr~~~~yPeGvwKGLC~~CL~sa~~ty~e~~~~~~s~~~gKC~LCG~kt~l~ 73 (119)
T PF10621_consen 3 DCDLCGRAIPTVCP-VRVFAPRLTLAYPEGVWKGLCETCLDSAEKTYQEVNENESSCRSGKCDLCGKKTQLY 73 (119)
T ss_pred ccchhcCcCCceeE-EEeecchhhccCcchHHHhhHHHHHHHHHHHHHHHhcccccccccceeccCCcceee
Confidence 47778877766652 21 1489988 59999874 145899999876643
No 73
>PLN02195 cellulose synthase A
Probab=46.46 E-value=13 Score=44.51 Aligned_cols=49 Identities=27% Similarity=0.571 Sum_probs=40.5
Q ss_pred ccccccCCCC--CCCCCcEEEccCCCceeccccccccccCCCCccceeecCC
Q psy5645 339 VICDVCRSPD--SEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLG 388 (525)
Q Consensus 339 ~~C~VC~~~e--~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~ 388 (525)
.+|.||.+.- ..+++..|-|.-|+-.|-..||.- ...||.=-|.+|...
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyey-er~eg~q~CpqCkt~ 57 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEY-EIKEGRKVCLRCGGP 57 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhh-hhhcCCccCCccCCc
Confidence 5899999853 456679999999999999999943 567898899999864
No 74
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=43.69 E-value=15 Score=44.31 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=41.4
Q ss_pred cccccccCCCC--CCCCCcEEEccCCCceeccccccccccCCCCccceeecCC
Q psy5645 338 NVICDVCRSPD--SEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLG 388 (525)
Q Consensus 338 d~~C~VC~~~e--~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~ 388 (525)
..+|.||.+.- ..+++..|-|.-|+-.|-..||.- ..-+|.=.|.+|...
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyey-e~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEY-ERSEGNQCCPQCNTR 66 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCc
Confidence 46899999864 356679999999999999999943 567888899999864
No 75
>KOG2807|consensus
Probab=40.93 E-value=18 Score=38.31 Aligned_cols=83 Identities=19% Similarity=0.595 Sum_probs=51.0
Q ss_pred ccCCCCccceeecCC---CCCccccCCCCCCCCcccc-CCCcccccccccCCCccEEccCcccccccCCCCcccccc--c
Q psy5645 374 TIPSGSWLCRTCVLG---KRPECILCPNKGGAMKCAR-SGNKWAHVSCALWIPEVSIGCVEKMEPITKISSIPQSRW--A 447 (525)
Q Consensus 374 ~iPeg~WlC~~C~~~---~~~~C~LCp~~gGalK~t~-~g~~WvHv~CAlwipev~f~~~~~~epI~~i~~I~~~r~--~ 447 (525)
.+..|.++|.+|... ....|..|...-- .+. -.+.+-|+ .|+..+.++|..+. .
T Consensus 271 ~~~~~Gy~CP~CkakvCsLP~eCpiC~ltLV---ss~hLARSyhhL-----------------~PL~~F~Eip~~~~~~~ 330 (378)
T KOG2807|consen 271 ELSGGGYFCPQCKAKVCSLPIECPICSLTLV---SSPHLARSYHHL-----------------FPLKPFVEIPETEYNGS 330 (378)
T ss_pred ccccCceeCCcccCeeecCCccCCccceeEe---cchHHHHHHHhh-----------------cCCcchhhccccccCCC
Confidence 345678999999985 4667888875321 111 01123333 33444555554442 2
Q ss_pred ccccccCCC--CCceeecCCCCCCceeeccchh
Q psy5645 448 LICILCRER--LGACIQCSVKTCKTAYHVTCAF 478 (525)
Q Consensus 448 l~C~iC~~~--~GacIqCs~~~C~~aFHvtCA~ 478 (525)
..|..|+.. .+.+.+|. .|...|=+.|-.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~--~Ck~~FCldCDv 361 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCE--SCKNVFCLDCDV 361 (378)
T ss_pred cceeeeccccCCCCcEEch--hccceeeccchH
Confidence 359999432 46688998 799999998864
No 76
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=40.86 E-value=16 Score=31.80 Aligned_cols=30 Identities=23% Similarity=0.781 Sum_probs=26.0
Q ss_pred cccccccCCCCCCCCCcEEEccC--CCceecccccc
Q psy5645 338 NVICDVCRSPDSEEGNEMVFCDC--CNICVHQACYG 371 (525)
Q Consensus 338 d~~C~VC~~~e~ed~N~lv~CD~--C~i~VHq~CYg 371 (525)
...|.+|... .+..+.|.. |...||..|.-
T Consensus 55 ~~~C~iC~~~----~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKS----GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCC----CceeEEcCCCCCCcCCCHHHHH
Confidence 3589999986 468999998 99999999964
No 77
>KOG0955|consensus
Probab=39.36 E-value=18 Score=43.92 Aligned_cols=37 Identities=35% Similarity=0.535 Sum_probs=32.5
Q ss_pred ccccCCchhhHHHHHHHhHHHHhcCCCcCCccccccc
Q psy5645 140 ACLYDLDDCDIAWLNILNGERACMGIMYNTQDDEEAT 176 (525)
Q Consensus 140 ~c~ydld~~d~~wl~~~n~e~~~~g~~~~de~~~e~~ 176 (525)
-=-||+|+.|.+||...|..+..-|...+-..++|.-
T Consensus 157 e~~y~~de~d~~wl~~~n~~~~~~~~~~v~~~~~~~~ 193 (1051)
T KOG0955|consen 157 EVEYDLDEEDYSWLDIMNELRTRNGVFDVSIDTFELL 193 (1051)
T ss_pred ccccchHHHHHHHHhhhhHHHhhcCCccccccchhhh
Confidence 4569999999999999999999999998888777753
No 78
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=39.29 E-value=11 Score=27.51 Aligned_cols=30 Identities=23% Similarity=0.610 Sum_probs=22.8
Q ss_pred cccccCCCCCCCCCcEEEccCCCceecccccc
Q psy5645 340 ICDVCRSPDSEEGNEMVFCDCCNICVHQACYG 371 (525)
Q Consensus 340 ~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYg 371 (525)
.|.||++.-.. ++.++... |+-.||..|..
T Consensus 2 ~C~IC~~~~~~-~~~~~~l~-C~H~fh~~Ci~ 31 (44)
T PF13639_consen 2 ECPICLEEFED-GEKVVKLP-CGHVFHRSCIK 31 (44)
T ss_dssp CETTTTCBHHT-TSCEEEET-TSEEEEHHHHH
T ss_pred CCcCCChhhcC-CCeEEEcc-CCCeeCHHHHH
Confidence 69999986433 45666665 99999999976
No 79
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=38.88 E-value=6 Score=29.99 Aligned_cols=30 Identities=23% Similarity=0.680 Sum_probs=18.9
Q ss_pred ccccCCCCCCCCCcEEE---ccCCCceecccccc
Q psy5645 341 CDVCRSPDSEEGNEMVF---CDCCNICVHQACYG 371 (525)
Q Consensus 341 C~VC~~~e~ed~N~lv~---CD~C~i~VHq~CYg 371 (525)
|-||++++.+++ .|+. |.+=...||+.|+-
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~ 33 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLE 33 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHH
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHH
Confidence 789999876554 5553 33334499999986
No 80
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=38.68 E-value=17 Score=31.27 Aligned_cols=49 Identities=24% Similarity=0.579 Sum_probs=30.6
Q ss_pred CcccccccCCCCC---------CCCCcEEEccCCCceecccccc--ccccCCCCccceeecC
Q psy5645 337 ENVICDVCRSPDS---------EEGNEMVFCDCCNICVHQACYG--ITTIPSGSWLCRTCVL 387 (525)
Q Consensus 337 ed~~C~VC~~~e~---------ed~N~lv~CD~C~i~VHq~CYg--i~~iPeg~WlC~~C~~ 387 (525)
+|+.|-||+..-. .++-+++.+. |+-.||..|.- +.. ...+=.|+.|+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~-~~~~~~CPmCR~ 79 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLST-QSSKGQCPMCRQ 79 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeecc-CccHHHHHHHHHHHcc-ccCCCCCCCcCC
Confidence 3567777775431 2334777666 99999999965 221 123347777765
No 81
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=37.55 E-value=12 Score=25.46 Aligned_cols=22 Identities=32% Similarity=1.073 Sum_probs=15.9
Q ss_pred CCCccceeecCC---CCCccccCCC
Q psy5645 377 SGSWLCRTCVLG---KRPECILCPN 398 (525)
Q Consensus 377 eg~WlC~~C~~~---~~~~C~LCp~ 398 (525)
+|.|.|..|.+. ....|..|..
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--
T ss_pred CcCccCCCCcCCchHHhhhhhCcCC
Confidence 689999999985 4678988874
No 82
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=36.86 E-value=19 Score=40.10 Aligned_cols=18 Identities=50% Similarity=1.007 Sum_probs=16.6
Q ss_pred cccCCchhhHHHHHHHhH
Q psy5645 141 CLYDLDDCDIAWLNILNG 158 (525)
Q Consensus 141 c~ydld~~d~~wl~~~n~ 158 (525)
=.||||+.|.-||.-+|+
T Consensus 131 v~YdlDe~D~m~l~Ylne 148 (669)
T COG5141 131 VIYDLDEYDTMWLRYLNE 148 (669)
T ss_pred eeecccchhHHHHHHHHH
Confidence 369999999999999997
No 83
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=36.38 E-value=12 Score=32.26 Aligned_cols=31 Identities=32% Similarity=0.957 Sum_probs=20.3
Q ss_pred cccccCCC-CCceeecCC---------CCCCceeeccchhc
Q psy5645 449 ICILCRER-LGACIQCSV---------KTCKTAYHVTCAFK 479 (525)
Q Consensus 449 ~C~iC~~~-~GacIqCs~---------~~C~~aFHvtCA~~ 479 (525)
.|.||+.. .|.|-.|.. ..|...||..|..+
T Consensus 23 ~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~k 63 (85)
T PF12861_consen 23 VCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILK 63 (85)
T ss_pred ceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHH
Confidence 56666654 234444443 36999999999865
No 84
>KOG1084|consensus
Probab=36.24 E-value=7 Score=42.18 Aligned_cols=141 Identities=19% Similarity=0.236 Sum_probs=72.6
Q ss_pred EEEccCCCceeccccccccccCCCCccceeecCCCCCccccCCCC---CCCCccccCCCcccccccccCCCcc----EEc
Q psy5645 355 MVFCDCCNICVHQACYGITTIPSGSWLCRTCVLGKRPECILCPNK---GGAMKCARSGNKWAHVSCALWIPEV----SIG 427 (525)
Q Consensus 355 lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~~~~~C~LCp~~---gGalK~t~~g~~WvHv~CAlwipev----~f~ 427 (525)
...|..|+.+-+..+-+-...|++ ....|.+|... -|..........++|..|+++...- .+.
T Consensus 98 ~~~c~~c~~~~~~~~~~~~~~~~~----------~~~~cg~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~~~~~~~ 167 (375)
T KOG1084|consen 98 CYVCKPCNKGAAHRGCLQLFGPEL----------KHLKCGLCRARVRKLGSQLYDEYPSFEARMGCILIQNSRNGPAPEA 167 (375)
T ss_pred eeeccccccccccCCchhhcCccc----------cccccccchhHHhhhcccccchhhhhhhccchhHHhhccCCCCccc
Confidence 356777776554433232222222 34456666611 1221222223467888888876431 111
Q ss_pred cCcccccccCCC---C-cccccccccccccCCCCCceee----cC-CCCCCceeeccchhccCCeEEEEeeccccCCCce
Q psy5645 428 CVEKMEPITKIS---S-IPQSRWALICILCRERLGACIQ----CS-VKTCKTAYHVTCAFKHGLEMRAIIEDENAEDGVK 498 (525)
Q Consensus 428 ~~~~~epI~~i~---~-I~~~r~~l~C~iC~~~~GacIq----Cs-~~~C~~aFHvtCA~~aGl~m~~~~~~~~~~d~~~ 498 (525)
....+.-...++ . .......+.|.+|... |+.+. |+ ...|...+|..||+.-+..... .....-
T Consensus 168 ~~~~~~~~~~ie~~e~~~~~~~~~~~~~~c~~~-~a~ts~~~~~~~~~~c~~~~e~~~~l~~~~~~~d------~~~~~~ 240 (375)
T KOG1084|consen 168 RLLCFSKSFLIESHEKVEDKCSEALNCKLCHEP-GAPTSQFDPCDIDDDCNRSREFFCALSPKATIPD------IGFELW 240 (375)
T ss_pred ccchhhhhhhHHhhhhhhhhcccccccccccCC-CCcccccCCcchhhhhhhhhhhhhhhcCCCcCCc------cchhHH
Confidence 111111111121 2 1223346789999987 55544 65 5689999999999877765431 111233
Q ss_pred EEEcCCCCCCCCcc
Q psy5645 499 LRSYCQKHSLTTKK 512 (525)
Q Consensus 499 ~~~yC~kHs~~~~~ 512 (525)
+..||..|++.-+.
T Consensus 241 ~h~~c~~~~~~~~~ 254 (375)
T KOG1084|consen 241 YHRYCALWAPNVHE 254 (375)
T ss_pred HHHHHHhcCCccee
Confidence 56678888766543
No 85
>KOG2041|consensus
Probab=36.05 E-value=30 Score=40.35 Aligned_cols=61 Identities=25% Similarity=0.484 Sum_probs=39.5
Q ss_pred cccccccCCCCCCCCCcEEEccCCCceeccccccccc-cCC-CCccceeecCCC-------CCccccCCCCCCC
Q psy5645 338 NVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITT-IPS-GSWLCRTCVLGK-------RPECILCPNKGGA 402 (525)
Q Consensus 338 d~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~-iPe-g~WlC~~C~~~~-------~~~C~LCp~~gGa 402 (525)
...|.+|...- +.--+.|..|+..+ ..|..... |.+ --|+|.+|.... -..|.||...-|.
T Consensus 1117 ~vdc~~cg~~i---~~~~~~c~ec~~kf-P~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs~~~~ 1186 (1189)
T KOG2041|consen 1117 KVDCSVCGAKI---DPYDLQCSECQTKF-PVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHSMESF 1186 (1189)
T ss_pred ceeeeecCCcC---CccCCCChhhcCcC-ceeeccCCccccceEEEccccccccccccccccccCccccChhhc
Confidence 36799998752 23446899998877 56654322 322 259999999862 3468888765443
No 86
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=34.66 E-value=27 Score=27.09 Aligned_cols=35 Identities=29% Similarity=0.616 Sum_probs=25.2
Q ss_pred cCCcccccCcccccccCCCCC-------CCCCcEEEccCCCc
Q psy5645 329 EGLGLEFDENVICDVCRSPDS-------EEGNEMVFCDCCNI 363 (525)
Q Consensus 329 ~~~~~e~ded~~C~VC~~~e~-------ed~N~lv~CD~C~i 363 (525)
.|.++..-++..|.-|+..=+ ..++++++|+.|+.
T Consensus 13 ~g~~va~v~~~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgR 54 (56)
T PF02591_consen 13 GGVAVARVEGGTCSGCHMELPPQELNEIRKGDEIVFCPNCGR 54 (56)
T ss_pred CCcEEEEeeCCccCCCCEEcCHHHHHHHHcCCCeEECcCCCc
Confidence 455666666779999996432 13369999999986
No 87
>KOG1246|consensus
Probab=34.64 E-value=29 Score=41.56 Aligned_cols=52 Identities=31% Similarity=0.810 Sum_probs=42.2
Q ss_pred cccCcccccccCCCCCCCCCcEEEccCCCceeccccccc--cccCCCCccceeecCC
Q psy5645 334 EFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGI--TTIPSGSWLCRTCVLG 388 (525)
Q Consensus 334 e~ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi--~~iPeg~WlC~~C~~~ 388 (525)
+......|..|..+..+ ..+ .|++|.-.+|..|-.. ..+++|.|.|..|..+
T Consensus 151 ~~~~~~~~~~~~k~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 151 EFIDYPQCNTCSKGKEE--KLL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred ccccchhhhccccCCCc--cce-ecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 34445689999987655 445 9999999999999885 4578999999999986
No 88
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=34.31 E-value=24 Score=25.43 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=20.6
Q ss_pred ccccccCCCCCCCCCcEEEccCCCce
Q psy5645 339 VICDVCRSPDSEEGNEMVFCDCCNIC 364 (525)
Q Consensus 339 ~~C~VC~~~e~ed~N~lv~CD~C~i~ 364 (525)
..|.+|.+......+-..+|+.|+--
T Consensus 9 ~~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCeEeEccCCEEEhhhCceE
Confidence 45999998866666789999999853
No 89
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=33.88 E-value=25 Score=22.84 Aligned_cols=21 Identities=33% Similarity=1.048 Sum_probs=16.2
Q ss_pred CCccceeecCC---CCCccccCCC
Q psy5645 378 GSWLCRTCVLG---KRPECILCPN 398 (525)
Q Consensus 378 g~WlC~~C~~~---~~~~C~LCp~ 398 (525)
|+|.|..|.+. ....|..|..
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~ 24 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGA 24 (26)
T ss_pred CcccCCCCCCcChhhhccccccCC
Confidence 68999999775 3567888864
No 90
>KOG1844|consensus
Probab=32.13 E-value=31 Score=38.14 Aligned_cols=48 Identities=27% Similarity=0.640 Sum_probs=35.9
Q ss_pred ccccccCCCCCCCCCcEEEccCCCceeccccccccccCC-CCccceeecCC
Q psy5645 339 VICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPS-GSWLCRTCVLG 388 (525)
Q Consensus 339 ~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPe-g~WlC~~C~~~ 388 (525)
..|+ |...+.- ++.++.|+.|+.--|..|+|+...-. ....|..|...
T Consensus 87 ~~c~-c~~~~~~-~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~ 135 (508)
T KOG1844|consen 87 SRCD-CGLEDDM-EGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPR 135 (508)
T ss_pred cccc-cccccCC-CceeeCCcccCcccCceeeeecCCCCchhceeeeeccc
Confidence 3443 5544321 67999999999999999999865433 67889999875
No 91
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=31.65 E-value=24 Score=31.32 Aligned_cols=33 Identities=15% Similarity=0.533 Sum_probs=26.2
Q ss_pred ccccccCCCCCCCCCcEEEccCCCceecccccc
Q psy5645 339 VICDVCRSPDSEEGNEMVFCDCCNICVHQACYG 371 (525)
Q Consensus 339 ~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYg 371 (525)
+.|++|........+.-+.|-.|++.++..=.|
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 479999766555667888999999999887544
No 92
>COG2097 RPL31A Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]
Probab=29.41 E-value=21 Score=31.04 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=18.0
Q ss_pred eEEeCccccccccccCCCceeccccc
Q psy5645 81 HVVVDPVLSNIYLTWKTNHQYEIRLP 106 (525)
Q Consensus 81 ~VVVDP~L~~~ld~w~~~~~~~~~vp 106 (525)
.|+|||.|...+ |++|+.=|
T Consensus 46 ~V~id~~lNe~i------W~rG~ekp 65 (89)
T COG2097 46 EVRIDPSLNEKI------WERGIEKP 65 (89)
T ss_pred eEEECHHHhHHH------HHhhccCC
Confidence 899999999999 89998754
No 93
>KOG0825|consensus
Probab=29.12 E-value=27 Score=41.02 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=25.0
Q ss_pred cccccccCCC--CCceeecCCCCCCce-eeccchhc
Q psy5645 447 ALICILCRER--LGACIQCSVKTCKTA-YHVTCAFK 479 (525)
Q Consensus 447 ~l~C~iC~~~--~GacIqCs~~~C~~a-FHvtCA~~ 479 (525)
...|.||... -..+|-|+ .|... ||+.|.-.
T Consensus 215 ~~~C~IC~~~DpEdVLLLCD--sCN~~~YH~YCLDP 248 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCD--SCNKVYYHVYCLDP 248 (1134)
T ss_pred cccceeeccCChHHhheeec--ccccceeeccccCc
Confidence 4579999975 35689999 89888 99999643
No 94
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=29.07 E-value=48 Score=24.91 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=24.1
Q ss_pred ccccccCCCC----CceeecCCCCCCceeeccchhccC
Q psy5645 448 LICILCRERL----GACIQCSVKTCKTAYHVTCAFKHG 481 (525)
Q Consensus 448 l~C~iC~~~~----GacIqCs~~~C~~aFHvtCA~~aG 481 (525)
..|.+|++.. ..-++|. .|....|-.|+....
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~--~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCS--WCGLVCHKKCLSKVP 47 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEET--TTT-EEETTGGCTSS
T ss_pred CCCcccCcccCCCCCCeEEEC--CCCChHhhhhhhhcC
Confidence 4799999874 4578998 799999999986543
No 95
>KOG4628|consensus
Probab=27.05 E-value=48 Score=35.58 Aligned_cols=47 Identities=19% Similarity=0.443 Sum_probs=31.0
Q ss_pred ccccccCCCCCCCCCcEEEccCCCceeccccccccccCCCCccceeecCC
Q psy5645 339 VICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLG 388 (525)
Q Consensus 339 ~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~~ 388 (525)
+.|+||.+. .++|+.+.. =-|.-.||..|-..= +-.-.-+|..|+..
T Consensus 230 ~~CaIClEd-Y~~GdklRi-LPC~H~FH~~CIDpW-L~~~r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLED-YEKGDKLRI-LPCSHKFHVNCIDPW-LTQTRTFCPVCKRD 276 (348)
T ss_pred ceEEEeecc-cccCCeeeE-ecCCCchhhccchhh-HhhcCccCCCCCCc
Confidence 589999985 445555555 779999999994421 11112357777764
No 96
>KOG3799|consensus
Probab=26.14 E-value=50 Score=30.96 Aligned_cols=51 Identities=20% Similarity=0.587 Sum_probs=31.0
Q ss_pred cCcccccccCCCCCCCCCcEEEccCCCceeccccccccccCCC--CccceeecC
Q psy5645 336 DENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSG--SWLCRTCVL 387 (525)
Q Consensus 336 ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg--~WlC~~C~~ 387 (525)
.+|..|-||....-.| +-=-.|.-|++.+-..|-|-..+-+. -|.|..|.-
T Consensus 63 ~ddatC~IC~KTKFAD-G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD-GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred CcCcchhhhhhccccc-ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 3568999999865433 23335666777777777664433332 377666654
No 97
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=25.35 E-value=27 Score=33.51 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=30.1
Q ss_pred CcccccccCCCCCCCCCcEEEccCCCceeccccccccccCCCCccceeecC
Q psy5645 337 ENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVL 387 (525)
Q Consensus 337 ed~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~ 387 (525)
.+..|-||++.+... ..-=.|.|-...||++|..-=-..++...|+.|..
T Consensus 7 ~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~ 56 (162)
T PHA02825 7 MDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNG 56 (162)
T ss_pred CCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCC
Confidence 456899999875422 22234556667899999873212344555555554
No 98
>KOG2930|consensus
Probab=24.42 E-value=8.8 Score=34.23 Aligned_cols=31 Identities=32% Similarity=1.009 Sum_probs=22.1
Q ss_pred cccccCCC-CCceeecCC-------------CCCCceeeccchhc
Q psy5645 449 ICILCRER-LGACIQCSV-------------KTCKTAYHVTCAFK 479 (525)
Q Consensus 449 ~C~iC~~~-~GacIqCs~-------------~~C~~aFHvtCA~~ 479 (525)
.|.||+.. ...||.|-. ..|.-+||..|..+
T Consensus 48 nCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisr 92 (114)
T KOG2930|consen 48 NCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISR 92 (114)
T ss_pred hhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHH
Confidence 57788764 455666654 35899999999843
No 99
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=23.89 E-value=38 Score=35.01 Aligned_cols=28 Identities=25% Similarity=0.905 Sum_probs=21.2
Q ss_pred cccccCcccccccCCCCCCCCCcEEEccCC
Q psy5645 332 GLEFDENVICDVCRSPDSEEGNEMVFCDCC 361 (525)
Q Consensus 332 ~~e~ded~~C~VC~~~e~ed~N~lv~CD~C 361 (525)
.+..++|.+|+||..+ .+.+.|.||--|
T Consensus 9 nIDLnddniCsVCkl~--Td~~tLsfChiC 36 (285)
T PF06937_consen 9 NIDLNDDNICSVCKLG--TDTETLSFCHIC 36 (285)
T ss_pred eeccCCCceeeeeeec--ccccceeeccee
Confidence 3556777899999987 345699999655
No 100
>KOG3053|consensus
Probab=23.57 E-value=20 Score=36.86 Aligned_cols=55 Identities=24% Similarity=0.434 Sum_probs=38.4
Q ss_pred cccCcccccccCCCCCCCCCc-EE---EccCCCceecccccc--cccc----CCCCccceeecCC
Q psy5645 334 EFDENVICDVCRSPDSEEGNE-MV---FCDCCNICVHQACYG--ITTI----PSGSWLCRTCVLG 388 (525)
Q Consensus 334 e~ded~~C~VC~~~e~ed~N~-lv---~CD~C~i~VHq~CYg--i~~i----Peg~WlC~~C~~~ 388 (525)
+.+.+..|-||+..++++.-. .| .|.|=+.=|||+|.. +.+. +-..-.|..|+..
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 345668999999986554332 33 789999999999987 3321 2234678888875
No 101
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=23.39 E-value=62 Score=26.95 Aligned_cols=30 Identities=23% Similarity=0.715 Sum_probs=25.3
Q ss_pred ccccccCCCCCCCCCcEEEccC--CCceeccccccc
Q psy5645 339 VICDVCRSPDSEEGNEMVFCDC--CNICVHQACYGI 372 (525)
Q Consensus 339 ~~C~VC~~~e~ed~N~lv~CD~--C~i~VHq~CYgi 372 (525)
..|.+|... .+..+.|.. |...||-.|.-.
T Consensus 37 ~~C~~C~~~----~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKK----GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCC----CCeEEEEeCCCCCcEEChHHHcc
Confidence 589999975 468999985 999999999653
No 102
>KOG0782|consensus
Probab=23.27 E-value=18 Score=41.01 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=15.6
Q ss_pred cEEEccCCCceeccccccc
Q psy5645 354 EMVFCDCCNICVHQACYGI 372 (525)
Q Consensus 354 ~lv~CD~C~i~VHq~CYgi 372 (525)
.--.|.-|.+-||..|...
T Consensus 198 ~rRkCAaCkIVvHT~Cieq 216 (1004)
T KOG0782|consen 198 ERRKCAACKIVVHTNCIEQ 216 (1004)
T ss_pred hhccceeeeEEEechHHHH
Confidence 4457999999999999763
No 103
>KOG0695|consensus
Probab=23.18 E-value=29 Score=37.33 Aligned_cols=57 Identities=23% Similarity=0.465 Sum_probs=36.8
Q ss_pred cchhhhhhhhhcccCCcccccCcccccccCCCCCCCCCcEEEccCCCceecccccccc
Q psy5645 316 RCWDKVQTIIKEEEGLGLEFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGIT 373 (525)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~e~ded~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~ 373 (525)
+-|.++.-.-...- ..........|.||.+.--.-+.+=..|-.|.+.||..|++..
T Consensus 120 rrwrkly~~ngh~f-qakr~nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v 176 (593)
T KOG0695|consen 120 RRWRKLYRANGHLF-QAKRFNRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLV 176 (593)
T ss_pred HHHHHHHhhcCcch-hhhhhccceeeeechhhhhhcccccceeecceeehhhhhcccc
Confidence 44777654321100 0122445578999998643344577899999999999999854
No 104
>KOG2114|consensus
Probab=22.23 E-value=66 Score=38.23 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=30.3
Q ss_pred ccccccCCCCCCCCCcEEEccCCCceeccccccccccCCCCccceeecC
Q psy5645 339 VICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVL 387 (525)
Q Consensus 339 ~~C~VC~~~e~ed~N~lv~CD~C~i~VHq~CYgi~~iPeg~WlC~~C~~ 387 (525)
..|+.|... -+--..=-.|+-.|||.|.+ ++.-.|.+|.-
T Consensus 841 skCs~C~~~----LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGT----LDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCc----cccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 589999974 22223335899999999988 67778999976
No 105
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.28 E-value=92 Score=24.78 Aligned_cols=35 Identities=11% Similarity=0.408 Sum_probs=27.8
Q ss_pred CcccccccCCCCCC-CCCcEEEccCCCceecccccc
Q psy5645 337 ENVICDVCRSPDSE-EGNEMVFCDCCNICVHQACYG 371 (525)
Q Consensus 337 ed~~C~VC~~~e~e-d~N~lv~CD~C~i~VHq~CYg 371 (525)
-...|..|...... ..+.+..|..|+..+|.+--+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~na 62 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNA 62 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHH
Confidence 45789999988665 456899999999999876443
No 106
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=21.26 E-value=68 Score=27.19 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=17.0
Q ss_pred HHHHhHHHHhcCCCcCCcc
Q psy5645 153 LNILNGERACMGIMYNTQD 171 (525)
Q Consensus 153 l~~~n~e~~~~g~~~~de~ 171 (525)
++++|.+|+..|++||...
T Consensus 5 ~~~iN~~R~~~gl~pl~~~ 23 (122)
T cd05379 5 LELINAYRAQNGLPPLTWD 23 (122)
T ss_pred HHHHHHHHHHcCCCCCccC
Confidence 6899999999999998765
No 107
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=20.58 E-value=46 Score=24.50 Aligned_cols=14 Identities=43% Similarity=1.113 Sum_probs=10.8
Q ss_pred ccCCchhhHHHHHHH
Q psy5645 142 LYDLDDCDIAWLNIL 156 (525)
Q Consensus 142 ~ydld~~d~~wl~~~ 156 (525)
.||+|. |+.||+++
T Consensus 10 ~~~~dp-~vswle~~ 23 (43)
T PF08195_consen 10 SYDMDP-DVSWLEVC 23 (43)
T ss_pred cccCCC-CccHHHhh
Confidence 477764 89999985
No 108
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=20.37 E-value=80 Score=22.36 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=19.7
Q ss_pred cccccccCCCCCC-CCCcEEEccCCCcee
Q psy5645 338 NVICDVCRSPDSE-EGNEMVFCDCCNICV 365 (525)
Q Consensus 338 d~~C~VC~~~e~e-d~N~lv~CD~C~i~V 365 (525)
...|..|+...-. ..+...+|-.|+..+
T Consensus 3 ~~~C~~C~~~~i~~~~~~~~~C~~Cg~~~ 31 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNKEDDYEVCIFCGSSF 31 (33)
T ss_pred ceEcCCCCCCeEEEecCCeEEcccCCcEe
Confidence 3578889876544 445778899988653
Done!