RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5645
(525 letters)
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish
(Danio rerio) [TaxId: 7955]}
Length = 298
Score = 78.2 bits (191), Expect = 1e-16
Identities = 38/55 (69%), Positives = 44/55 (80%)
Query: 37 LGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNI 91
LG+RR G RKALHDP ALVLY PP +SAHDL+K DK+K+ VHVVVDPVLS +
Sbjct: 1 LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKV 55
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 58.7 bits (141), Expect = 1e-11
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 332 GLEFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGI------TTIPSGSWLCRTC 385
+ + C VCR GN++V C C+ HQ C+ P W C C
Sbjct: 10 DFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARC 69
Query: 386 VLGKR 390
+
Sbjct: 70 TRQMK 74
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 52.3 bits (125), Expect = 1e-09
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 336 DENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGIT---TIPSGSWLCRTCVLGKRP 391
+ C C + CD C + H C IT + C +C P
Sbjct: 4 GSSGQCGACGESY-AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 51.6 bits (123), Expect = 2e-09
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 336 DENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGI--TTIPSGSWLCRTCVLGKRP 391
D + C + D ++G M+ CD C + H C GI +LC C+ P
Sbjct: 13 DNWKVDCKCGTKD-DDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 50.4 bits (120), Expect = 6e-09
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 336 DENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTCVLGKRPE 392
+E C +C E C H +C +T P G W C C P
Sbjct: 14 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDSGPS 69
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 49.7 bits (118), Expect = 1e-08
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 335 FDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGIT-------TIPSGSWLCRTCVL 387
+D N + +CR P M+ CD C H C GI+ ++C C +
Sbjct: 12 YDPNALYCICRQPH--NNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69
Query: 388 GKRP 391
P
Sbjct: 70 LSGP 73
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 49.6 bits (118), Expect = 1e-08
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 336 DENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYG--ITTIPSGSWLCRTC 385
D IC VC+ + ++V C+ C C H C+ + +P W C C
Sbjct: 5 DSATICRVCQ-----KPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 51
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 48.0 bits (114), Expect = 3e-08
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQACY--GITTIPSGSWLCRTC 385
C VCR E ++++ CD CN H C + +P G W C C
Sbjct: 3 CKVCRKKG--EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 46.5 bits (110), Expect = 1e-07
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 336 DENVICDVCRSPDSEEGNEMVFCDCCNICVHQAC--YGITTIPSGSWLCRTCV 386
C VC+ +G E++ CD C H C + IP+G WLC C
Sbjct: 7 HHMEFCRVCK-----DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 44.5 bits (105), Expect = 4e-07
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 337 ENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTC 385
E C +C E DC H AC G+TT P G W C C
Sbjct: 1 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 48
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 44.0 bits (103), Expect = 1e-06
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 336 DENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGS-------WLCRTCVLG 388
+ V C VC + + C++ H C + P + C C L
Sbjct: 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72
Query: 389 KRP 391
P
Sbjct: 73 SGP 75
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 39.7 bits (92), Expect = 5e-05
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 340 ICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPS---GSWLCRTCVLGKRPE 392
+ +CR P + M+ C C H +C GI + + C C P
Sbjct: 13 VYCLCRQPYNVNH-FMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPS 67
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 30.9 bits (69), Expect = 0.13
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSG--SWLCRTC 385
C +C G+ V C+ C V C T+ WLC+ C
Sbjct: 51 CILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKIC 97
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 30.0 bits (67), Expect = 0.14
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 324 IIKEEEGLGLE-------FDENVICDVCRSP-DSEEGNEMVFCDCCNICVHQACY 370
II++ +G+ + + C VC S + C C VH +C
Sbjct: 17 IIEDADGIAMPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCK 71
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 27.1 bits (60), Expect = 0.82
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 336 DENVICDVCRSPDSEEGNEMVFCDCCNICVHQAC 369
D+ V C VC + + E+G E F C H C
Sbjct: 3 DDGVECAVCLA-ELEDGEEARFLPRCGHGFHAEC 35
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein
DnaJ {Escherichia coli [TaxId: 562]}
Length = 79
Score = 27.4 bits (60), Expect = 0.92
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 333 LEFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQAC-YGITTIPSGSWLCR 383
+ CDVC ++ G + C C+ G + C+
Sbjct: 6 IRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQ 57
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 26.7 bits (58), Expect = 1.4
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 333 LEFDENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTC 385
+E ++ +C +C E C VH++C S + C+ C
Sbjct: 1 MEDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQIC 53
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 26.3 bits (57), Expect = 1.4
Identities = 4/38 (10%), Positives = 11/38 (28%)
Query: 360 CCNICVHQACYGITTIPSGSWLCRTCVLGKRPECILCP 397
C I + + S + ++ + + P
Sbjct: 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDP 39
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 25.8 bits (56), Expect = 1.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQAC 369
CD C S + + C+ C + VH C
Sbjct: 14 CDHCGSLLWGLVKQGLKCEDCGMNVHHKC 42
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 26.1 bits (57), Expect = 1.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQAC 369
C+ C + + V C C + VH+ C
Sbjct: 18 CEYCANFMWGLIAQGVRCSDCGLNVHKQC 46
>d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 395
Score = 28.4 bits (63), Expect = 2.1
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 293 PIPPGLPAIQEDRLEKMIAEL-EVRCWDKVQTIIKEE--EGLGLE 334
P+P G RL++M+ ++R W + I +E E LG+
Sbjct: 349 PMPEGPNKGHTVRLKEMLPRYYKLRGWTE-DGKIPKEKLEELGIA 392
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Prosthecochloris
vibrioformis [TaxId: 1098]}
Length = 319
Score = 28.0 bits (62), Expect = 3.2
Identities = 12/108 (11%), Positives = 27/108 (25%), Gaps = 17/108 (15%)
Query: 293 PIPPGLPAIQEDRLEKMIAELEVRCWDKVQTII--------KEEEGLGLEFDENVICDVC 344
+ +P +++ + E + +D I K E+G D ++
Sbjct: 42 EVS-SMPGSFRFTIDRAVEECK-ELYDLGIQGIDLFGIPEQKTEDGSEAYNDNGILQQAI 99
Query: 345 RSPDSEEGNEMVFCDCCN-------ICVHQACYGITTIPSGSWLCRTC 385
R+ + D I + L +
Sbjct: 100 RAIKKAVPELCIMTDVALDPFTPFGHDGLVKDGIILNDETVEVLQKMA 147
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 26.0 bits (57), Expect = 4.2
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 331 LGLEFDENVICDVCRSPDSEEGNEMVF-CDCCNICVHQAC 369
L L + CD C EEG + CD C+ +H C
Sbjct: 40 LELTRVQVYTCDKCE----EEGTIWSYHCDECDFDLHAKC 75
Score = 25.3 bits (55), Expect = 7.9
Identities = 8/32 (25%), Positives = 8/32 (25%), Gaps = 3/32 (9%)
Query: 449 ICILCRERL-GACIQCSVKTCKTAYHVTCAFK 479
C C E C C H CA
Sbjct: 49 TCDKCEEEGTIWSYHCD--ECDFDLHAKCALN 78
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 25.3 bits (55), Expect = 4.8
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 359 DCCNICVHQACYGITTIPSGSWLCRTCV---LGKRPECILC 396
+ C IC+ +P C C+ + + P C LC
Sbjct: 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLC 46
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 27.0 bits (58), Expect = 5.7
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 198 MNSIYNRNTNEAPAELFRKDLISAMKL-PDSEPLKSDEFWVISDQWKQEWER 248
+I N A +L ++ + L PD+E +K+ E+ +E
Sbjct: 263 AETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAASSIYEE 314
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F
{Bacillus subtilis [TaxId: 1423]}
Length = 119
Score = 26.1 bits (57), Expect = 5.8
Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 1 MFTSYDHWENLIRQILAKPFKVPILNYTGSGYSTKALGVRREGARKALHDPTAPNALV 58
D E +++++ + ++ T G + GA P + +
Sbjct: 54 KIPGMDGIE-ILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIR 110
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
[TaxId: 10117]}
Length = 66
Score = 25.0 bits (54), Expect = 6.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 341 CDVCRSPDSEEGNEMVFCDCCNICVHQAC 369
CD C S ++ + C CC + VH+ C
Sbjct: 22 CDHCGSLLYGLVHQGMKCSCCEMNVHRRC 50
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 24.4 bits (52), Expect = 9.0
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 337 ENVICDVCRSPDSEEGNEMVFCDCCNICVHQACYGITTIPSGSWLCRTC 385
++ C C++ + + + C + ++C G+ C C
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCV-DLLFVRGAGNCPEC 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.424
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,043,198
Number of extensions: 101593
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 48
Length of query: 525
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 436
Effective length of database: 1,185,626
Effective search space: 516932936
Effective search space used: 516932936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)