BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5646
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JKG|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
Export Factor
pdb|1JN5|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
Factor
Length = 140
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
+ +LY A L WNG+ G +++ ++ LP + ++ +D + +EA +Q L+
Sbjct: 35 LSRLYMGT-ATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLV 93
Query: 61 STSGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
G+V ++ K+ FNQNFI++A+ + WKI SD FR Q
Sbjct: 94 VICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQ 136
>pdb|3NV0|B Chain B, Crystal Structure And Mutational Analysis Of The Nxf2NXT1
Heterodimeric Complex From Caenorhabditis Elegans At
1.84 A Resolution
Length = 154
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 14 WNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQI-AYLISTSGTVVYKNMK 72
WNG+ G +I +++ LP H+++S+D RLPE + L++ +G V
Sbjct: 67 WNGNPINGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDS 126
Query: 73 KTGFNQNFIISAEGARWKIISDVFR 97
K F Q ++ E ++K+ SD FR
Sbjct: 127 KRAFTQTLLLGVEDGKYKVKSDRFR 151
>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant
pdb|1JB2|B Chain B, Crystal Structure Of Ntf2 M84e Mutant
Length = 127
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y D + L+W G +G AIV+ +S LP H + + D P+ +++
Sbjct: 29 LGAIYIDA-SCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISEVV- 86
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
G + GF+Q F++ W +D+FRL
Sbjct: 87 -----GQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant
pdb|1JB4|B Chain B, Crystal Structure Of Ntf2 M102e Mutant
Length = 127
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y D + L+W G +G AIV+ +S LP H + + D P+ + +
Sbjct: 29 LGAIYIDA-SCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVV- 86
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
G + GF+Q F++ W +D+FRL
Sbjct: 87 -----GQLKADEDPIMGFHQEFLLKNINDAWVCTNDMFRL 121
>pdb|1GY5|A Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
pdb|1GY5|B Chain B, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
Length = 127
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y D + L+W G +G AIV+ +S LP H + + D P+ + +
Sbjct: 29 LGAIYIDA-SCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVV- 86
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
G + GF+Q F++ W +D+FRL
Sbjct: 87 -----GQLKANENPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|1QMA|A Chain A, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|B Chain B, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|C Chain C, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|D Chain D, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
Length = 126
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y D + L+W G +G AIV+ +S LP H + + D P+ + +
Sbjct: 28 LGAIYIDA-SCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVV- 85
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
G + GF+Q F++ W +D+FRL
Sbjct: 86 -----GQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 120
>pdb|1OUN|A Chain A, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1OUN|B Chain B, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1A2K|A Chain A, Gdpran-Ntf2 Complex
pdb|1A2K|B Chain B, Gdpran-Ntf2 Complex
pdb|1GY6|A Chain A, Ntf2 From Rat, Ammonium Sulphate Conditions
pdb|1GY6|B Chain B, Ntf2 From Rat, Ammonium Sulphate Conditions
Length = 127
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y D + L+W G +G AIV+ +S LP H + + D P+ + +
Sbjct: 29 LGAIYIDA-SCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVV- 86
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
G + GF+Q F++ W +D+FRL
Sbjct: 87 -----GQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y D + L+W G +G AIV+ +S LP H + + D P+ + +
Sbjct: 29 LGAIYIDA-SCLTWKGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVV- 86
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
G + GF+Q F++ W +D+FRL
Sbjct: 87 -----GQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y D + L+W G +G AIV+ +S LP H + + D P+ + +
Sbjct: 29 LGAIYIDA-SCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVV- 86
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
G + GF+Q F++ W +D+FRL
Sbjct: 87 -----GQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|1JB5|A Chain A, Crystal Structure Of Ntf2 M118e Mutant
pdb|1JB5|B Chain B, Crystal Structure Of Ntf2 M118e Mutant
Length = 127
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y D + L+W G +G AIV+ +S LP H + + D P+ + +
Sbjct: 29 LGAIYIDA-SCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVV- 86
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
G + GF+Q F++ W +D FRL
Sbjct: 87 -----GQLKADEDPIMGFHQMFLLKNINDAWVCTNDEFRL 121
>pdb|1ASK|A Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
pdb|1ASK|B Chain B, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
Length = 127
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y D + L+W G +G AIV+ +S LP + + D P+ + +
Sbjct: 29 LGAIYIDA-SCLTWEGQQFQGKAAIVEKLSSLPFQKIQASITAQDHQPTPDSCIISMVV- 86
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
G + GF+Q F++ W +D+FRL
Sbjct: 87 -----GQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|1GY7|A Chain A, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|B Chain B, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|C Chain C, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|D Chain D, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GYB|A Chain A, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|B Chain B, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|C Chain C, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|D Chain D, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
Length = 125
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
+G LY++E ++L++ +G++ IV+ + LP H + ++D + A+
Sbjct: 27 LGNLYRNE-SMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLD----AQPASPYGDVL 81
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
++ T ++ + F+Q F + +G + + +D+FRL
Sbjct: 82 VMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRL 121
>pdb|3K2I|A Chain A, Human Acyl-Coenzyme A Thioesterase 4
pdb|3K2I|B Chain B, Human Acyl-Coenzyme A Thioesterase 4
Length = 422
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDI 44
M K+ A +S NG G G+ AI S +PP ++L+ + +
Sbjct: 242 MASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKV 285
>pdb|2FFI|A Chain A, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
Acid Hydrolase From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr23.
pdb|2FFI|B Chain B, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
Acid Hydrolase From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr23
Length = 288
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 69 KNMKKTGFNQNFIISAEGARWKIISDVFRLQQTP 102
+ + + GF + +S G W +S ++RLQ +P
Sbjct: 175 RGLGQPGFAELLTLSGRGKVWVKVSGIYRLQGSP 208
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP 34
G+L + VL+ GHG K A + ++ELPP
Sbjct: 304 GRLEPESTVVLTLTGHGLK-DPATAERVAELPP 335
>pdb|1VEX|A Chain A, F-Spondin Tsr Domain 4
Length = 56
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 16 GHGTKGSQAIVKYISELPPCDHELKSMDIHRLPE 49
G G + Q ++K ++EL C+ +L+ + LPE
Sbjct: 21 GKGMRTRQRMLKSLAELGDCNEDLEQAEKCMLPE 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,134,703
Number of Sequences: 62578
Number of extensions: 105781
Number of successful extensions: 291
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 18
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)