Query psy5646
Match_columns 106
No_of_seqs 109 out of 635
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:02:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4353|consensus 100.0 4.2E-34 9E-39 187.1 5.6 102 1-103 34-139 (139)
2 KOG2104|consensus 100.0 2.3E-32 5E-37 176.6 8.9 95 1-102 28-125 (126)
3 cd00780 NTF2 Nuclear transport 100.0 1.4E-30 3.1E-35 170.0 11.9 93 1-100 24-119 (119)
4 PF02136 NTF2: Nuclear transpo 99.9 1.3E-25 2.7E-30 145.3 11.4 93 1-98 21-118 (118)
5 KOG0116|consensus 99.9 6E-25 1.3E-29 169.1 7.9 93 1-100 35-134 (419)
6 PF10429 Mtr2: Nuclear pore RN 99.5 3.6E-14 7.9E-19 97.0 5.0 77 1-83 30-107 (166)
7 cd00531 NTF2_like Nuclear tran 98.6 3.7E-06 8E-11 52.3 12.5 91 2-98 21-123 (124)
8 KOG3763|consensus 98.0 2.5E-05 5.5E-10 62.5 6.9 79 19-101 412-498 (585)
9 PF13474 SnoaL_3: SnoaL-like d 97.4 0.0032 6.9E-08 39.5 9.5 87 3-97 22-117 (121)
10 PF14534 DUF4440: Domain of un 97.2 0.012 2.5E-07 35.8 9.6 82 2-91 21-107 (107)
11 TIGR02246 conserved hypothetic 97.0 0.014 3E-07 37.0 9.1 89 2-97 26-124 (128)
12 PF15008 DUF4518: Domain of un 94.6 0.19 4.2E-06 37.3 6.9 75 20-100 176-260 (262)
13 PF08332 CaMKII_AD: Calcium/ca 94.6 0.75 1.6E-05 30.5 9.0 85 3-94 26-122 (128)
14 PF12893 Lumazine_bd_2: Putati 93.9 0.99 2.2E-05 28.6 8.6 81 2-97 26-116 (116)
15 PF13577 SnoaL_4: SnoaL-like d 93.5 1.1 2.5E-05 27.9 8.6 44 2-46 29-79 (127)
16 COG4319 Ketosteroid isomerase 93.1 0.77 1.7E-05 30.9 7.0 86 2-95 32-128 (137)
17 PF12680 SnoaL_2: SnoaL-like d 91.4 0.97 2.1E-05 26.6 5.6 31 2-33 17-47 (102)
18 cd00781 ketosteroid_isomerase 78.7 13 0.00028 23.0 6.2 32 2-34 25-58 (122)
19 PF12870 Lumazine_bd: Lumazine 54.7 44 0.00096 19.9 5.7 28 63-92 84-111 (111)
20 smart00391 MBD Methyl-CpG bind 39.8 21 0.00046 21.4 1.5 33 15-47 36-68 (77)
21 PF07366 SnoaL: SnoaL-like pol 39.2 39 0.00084 21.1 2.8 57 3-67 21-82 (126)
22 cd01396 MeCP2_MBD MeCP2, MBD1, 34.6 18 0.0004 21.7 0.7 32 15-46 34-65 (77)
23 PF12712 DUF3805: Domain of un 33.9 1.5E+02 0.0033 20.1 5.8 64 16-85 49-115 (153)
24 cd05883 Ig2_Necl-2 Second immu 32.9 1.1E+02 0.0025 18.4 4.1 48 9-64 14-63 (82)
25 PF12883 DUF3828: Protein of u 31.7 1.3E+02 0.0028 19.2 4.4 28 66-93 88-115 (120)
26 PF07029 CryBP1: CryBP1 protei 29.9 1.8E+02 0.0039 20.1 4.9 28 37-69 132-159 (161)
27 PF15517 TBPIP_N: TBP-interact 28.3 61 0.0013 20.4 2.2 22 78-99 63-84 (99)
28 PF12636 DUF3781: Protein of u 28.3 44 0.00094 20.1 1.5 20 85-104 47-66 (73)
29 PF14930 Qn_am_d_aII: Quinohem 27.6 1.2E+02 0.0027 19.5 3.6 28 64-94 64-95 (108)
30 PF13363 BetaGal_dom3: Beta-ga 25.6 34 0.00074 20.8 0.7 12 9-20 57-68 (79)
31 PF11533 DUF3225: Protein of u 24.7 2.2E+02 0.0047 18.9 11.5 86 4-100 35-124 (125)
32 cd06480 ACD_HspB8_like Alpha-c 24.2 1.4E+02 0.003 18.4 3.3 26 59-84 39-68 (91)
33 PF05629 Nanovirus_C8: Nanovir 22.7 2.5E+02 0.0054 18.9 5.7 43 58-100 50-102 (153)
34 cd06477 ACD_HspB3_Like Alpha c 21.9 1.7E+02 0.0038 17.5 3.4 26 59-84 31-60 (83)
35 PF07080 DUF1348: Protein of u 21.4 58 0.0013 22.0 1.3 26 5-31 35-60 (143)
36 COG4615 PvdE ABC-type sideroph 21.4 94 0.002 25.2 2.6 19 2-20 370-388 (546)
37 PF10787 YfmQ: Uncharacterised 21.3 76 0.0016 21.6 1.8 23 9-31 44-68 (149)
38 cd03029 GRX_hybridPRX5 Glutare 21.0 88 0.0019 17.5 1.9 20 11-30 53-72 (72)
39 cd00136 PDZ PDZ domain, also c 20.8 1.6E+02 0.0035 16.0 3.0 24 10-33 36-61 (70)
No 1
>KOG4353|consensus
Probab=100.00 E-value=4.2e-34 Score=187.08 Aligned_cols=102 Identities=32% Similarity=0.654 Sum_probs=97.4
Q ss_pred CCCCCCCCCceEEEcCCccccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEE
Q psy5646 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNF 80 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtF 80 (106)
|++||.+ +|.++|||+++.|++.|.+++..||.++|+|+++||||+++.+++++.++||+|+|.|+++|+++|.|.|||
T Consensus 34 i~rlY~~-~atlvWNGn~v~g~esls~ff~~LPsS~~qi~~lD~Qpv~dqat~~q~~vLvvvsGtVkFdG~k~r~F~qt~ 112 (139)
T KOG4353|consen 34 IGRLYLD-NATLVWNGNPVSGTESLSEFFNMLPSSEFQINDLDCQPVHDQATGSQTTVLVVVSGTVKFDGNKQRVFNQTF 112 (139)
T ss_pred hHHHhhc-cceEEEcCCcchhHHHHHHHHHhCCCccccccccccccchhhcccccceEEEEEeeeEEEcCCcccccccee
Confidence 5789999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEE----EEceeEEeeecCC
Q psy5646 81 IISAEGARWK----IISDVFRLQQTPV 103 (106)
Q Consensus 81 vL~~~~~~y~----I~nD~fR~~~~~~ 103 (106)
+|.++++.|. |.+||||++|+.+
T Consensus 113 ll~~e~~~~k~~~~v~Sd~fr~~d~~~ 139 (139)
T KOG4353|consen 113 LLTAEDPPFKTVWKVASDCFRFQDWQS 139 (139)
T ss_pred EEeecCCccchhhhhhhhhhhhhhccC
Confidence 9999987666 9999999999864
No 2
>KOG2104|consensus
Probab=99.98 E-value=2.3e-32 Score=176.58 Aligned_cols=95 Identities=25% Similarity=0.515 Sum_probs=90.3
Q ss_pred CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ 78 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q 78 (106)
|..+|.+ .|.|||+|..++|+++|.+|+.+|| +++|.|+++||||++. ++|||+|.|.++.|++++.+|+|
T Consensus 28 l~~lY~~-~S~LTfEGqq~qG~~~IveKl~sLpFqkiqh~IttvD~QPt~~------g~ilv~V~G~Lk~dEd~~~~FsQ 100 (126)
T KOG2104|consen 28 LGALYID-TSMLTFEGQQIQGKDAIVEKLTSLPFQKIQHSITTVDSQPTPD------GGILVMVVGQLKLDEDPILRFSQ 100 (126)
T ss_pred hhhhhcc-cceeeEcchhhcchHHHHHHHhcCChhhhhceeeecccccCCC------CcEEEEEeeeeeeccCCccceee
Confidence 5689999 8999999999999999999999999 9999999999999987 69999999999999999999999
Q ss_pred EEEEEEeC-CeEEEEceeEEeeecC
Q psy5646 79 NFIISAEG-ARWKIISDVFRLQQTP 102 (106)
Q Consensus 79 tFvL~~~~-~~y~I~nD~fR~~~~~ 102 (106)
+|+|.|+. ++|||.||+||+-..+
T Consensus 101 vF~L~~n~~~~~~v~ndiFRLn~~n 125 (126)
T KOG2104|consen 101 VFLLKPNIQGSYYVFNDIFRLNLHN 125 (126)
T ss_pred EEEEeEcCCCCEEEEeeeEEEeccc
Confidence 99999995 9999999999998754
No 3
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=99.97 E-value=1.4e-30 Score=170.04 Aligned_cols=93 Identities=25% Similarity=0.545 Sum_probs=89.4
Q ss_pred CCCCCCCCCceEEEcC-CccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeee
Q psy5646 1 MGKLYKDEDAVLSWNG-HGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFN 77 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG-~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~ 77 (106)
|++||++ +|.++|+| +.+.|+++|.++|++|| .++|++.++||||+++ ++++|+|+|.++.++.++|+|+
T Consensus 24 L~~fY~~-~s~~~~~~~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~------~~ili~V~G~~~~~~~~~~~F~ 96 (119)
T cd00780 24 LHRLYGD-TSMLSREGMKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPS------GGVIVMVTGSLKLDEQPPRKFS 96 (119)
T ss_pred HHhhcCC-CcEEEECCceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCC------CCEEEEEEEEEEECCCCceeEe
Confidence 5789999 99999999 99999999999999999 9999999999999997 5899999999999998999999
Q ss_pred EEEEEEEeCCeEEEEceeEEeee
Q psy5646 78 QNFIISAEGARWKIISDVFRLQQ 100 (106)
Q Consensus 78 qtFvL~~~~~~y~I~nD~fR~~~ 100 (106)
|+|+|+|.+++|+|.||+|||++
T Consensus 97 q~F~L~~~~~~~~I~nD~fr~~~ 119 (119)
T cd00780 97 QTFVLAPQNGGYFVLNDIFRFVD 119 (119)
T ss_pred EEEEEEecCCeEEEEeeEEEecC
Confidence 99999999999999999999975
No 4
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.93 E-value=1.3e-25 Score=145.31 Aligned_cols=93 Identities=29% Similarity=0.592 Sum_probs=83.4
Q ss_pred CCCCC-CCCCceEEEcCC-ccccHHHHHHHHHcCCCe--eEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCce-eee
Q psy5646 1 MGKLY-KDEDAVLSWNGH-GTKGSQAIVKYISELPPC--DHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMK-KTG 75 (106)
Q Consensus 1 l~~~Y-~~~~s~l~~nG~-~~~G~~~I~~~l~~lp~~--~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~-~~~ 75 (106)
|++|| .+ .|.++|+|+ .+.|+++|.++|.+||.+ +|+|+++||||.... .++++|+|+|.++.++.+ .|+
T Consensus 21 L~~~Y~~~-~s~~~~~~~~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~----~~~i~i~v~G~~~~~~~~~~~~ 95 (118)
T PF02136_consen 21 LHKLYHDD-ASFLTWNGNRPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSS----DGSILITVTGQFKEDDNPNPRR 95 (118)
T ss_dssp GGGGEEEE-EEEEEETTECEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEEC----CSEEEEEEEEEEEETTSEEEEE
T ss_pred HHHHHcCC-CeeecCCCchhhhhHHHHHHHHhcCCCcccEEEeccccccccccc----CCcEEEEEEeEEEecCCCcccE
Confidence 57899 66 889999999 999999999999999966 999999999973211 158999999999999885 799
Q ss_pred eeEEEEEEEeCCeEEEEceeEEe
Q psy5646 76 FNQNFIISAEGARWKIISDVFRL 98 (106)
Q Consensus 76 F~qtFvL~~~~~~y~I~nD~fR~ 98 (106)
|+|+|+|+|.+++|+|.||+|||
T Consensus 96 F~q~FvL~~~~~~~~I~nd~~r~ 118 (118)
T PF02136_consen 96 FSQTFVLVPQNNGYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEEcCCEEEEEeeEEEC
Confidence 99999999999999999999997
No 5
>KOG0116|consensus
Probab=99.91 E-value=6e-25 Score=169.11 Aligned_cols=93 Identities=26% Similarity=0.487 Sum_probs=87.6
Q ss_pred CCCCCCCCCceEEEcC---C--ccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCcee
Q psy5646 1 MGKLYKDEDAVLSWNG---H--GTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKK 73 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG---~--~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~ 73 (106)
||+||.+ +|.|+.-| + .+.|.++|++++++|+ .++.+|.++|+|.+++ ++|+|+|+|.+...+.+.
T Consensus 35 lhrfY~~-~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S~~------~GvvI~VtG~lt~~~~~r 107 (419)
T KOG0116|consen 35 LHRFYMD-DSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQASLE------KGVVIMVTGYLTNKDGPR 107 (419)
T ss_pred HHHHhhc-cceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhhcc------CCeEEEEEEEEEeCCCcc
Confidence 6899999 99999854 4 6789999999999999 7899999999999988 599999999999999999
Q ss_pred eeeeEEEEEEEeCCeEEEEceeEEeee
Q psy5646 74 TGFNQNFIISAEGARWKIISDVFRLQQ 100 (106)
Q Consensus 74 ~~F~qtFvL~~~~~~y~I~nD~fR~~~ 100 (106)
|+|+|||+|+|++++|||+||+|||+|
T Consensus 108 RkF~QtFfLapq~~~yfVlNDiFRfvd 134 (419)
T KOG0116|consen 108 RKFSQTFFLAPQEKGYFVLNDIFRFVD 134 (419)
T ss_pred eEEEEEEEEeecCCceEEEechhhhcc
Confidence 999999999999999999999999999
No 6
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=99.49 E-value=3.6e-14 Score=96.97 Aligned_cols=77 Identities=17% Similarity=0.374 Sum_probs=61.7
Q ss_pred CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEE
Q psy5646 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQN 79 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qt 79 (106)
|..||.+ +|.++|||+++.+..+..+.|.++| .++|+++++|||.++++ ++++++|+|.|++|+..+-+-.|.
T Consensus 30 l~~F~~~-~~~II~Ng~Pi~~~~~F~~~w~~~pv~TqH~L~s~D~H~IPGs-----gt~i~N~n~KVRFDEsGrdk~G~~ 103 (166)
T PF10429_consen 30 LTQFLPP-NCKIIWNGTPIAQPTAFQQTWQQQPVQTQHQLTSFDCHVIPGS-----GTFIINVNCKVRFDESGRDKLGED 103 (166)
T ss_dssp HTTCECC-EEEEEETTEEES-HHHHHHHHHCCS--EEEEEEEEEEEEETTT-----TEEEEEEEEEEEEB-SSB-TTS-B
T ss_pred hHhhcCC-CcEEEECCccCCCHHHHHHHHHhCccceeeeeeeeeeeEeCCC-----CeEEEeeeEEEEecCCCCCCCCCc
Confidence 3568888 9999999999999999999999999 99999999999999986 689999999999997644444444
Q ss_pred EEEE
Q psy5646 80 FIIS 83 (106)
Q Consensus 80 FvL~ 83 (106)
..|.
T Consensus 104 a~l~ 107 (166)
T PF10429_consen 104 ADLP 107 (166)
T ss_dssp --TT
T ss_pred eeec
Confidence 4443
No 7
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.61 E-value=3.7e-06 Score=52.29 Aligned_cols=91 Identities=25% Similarity=0.359 Sum_probs=73.4
Q ss_pred CCCCCCCCceEEEcC-----CccccHHHHHHHHHcCC----CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECC--
Q psy5646 2 GKLYKDEDAVLSWNG-----HGTKGSQAIVKYISELP----PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKN-- 70 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG-----~~~~G~~~I~~~l~~lp----~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~-- 70 (106)
..||.+ ++.+.+.+ ....|+++|.+++..++ ...|.+..++++...+. ....+.+.+.+...+
T Consensus 21 ~~~~~~-d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 94 (124)
T cd00531 21 ALLYAD-DAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDG-----EGVVVSVFGVLRTRGDG 94 (124)
T ss_pred HhhCcC-cEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCC-----EEEEEEEEEEEEEccCC
Confidence 468999 99999987 57789999999999886 35555689999987652 245667777777665
Q ss_pred -ceeeeeeEEEEEEEeCCeEEEEceeEEe
Q psy5646 71 -MKKTGFNQNFIISAEGARWKIISDVFRL 98 (106)
Q Consensus 71 -~~~~~F~qtFvL~~~~~~y~I~nD~fR~ 98 (106)
...+.+..+|.+.+.++.|+|.+..+++
T Consensus 95 ~~~~~~~~~~~~~~~~~g~w~i~~~~~~~ 123 (124)
T cd00531 95 EQDVFAGGQTFVLRPQGGGGKIANRRFRL 123 (124)
T ss_pred ceeEEEEEEEEEEEEeCCEEEEEEEEEec
Confidence 3577899999999999999999999886
No 8
>KOG3763|consensus
Probab=97.98 E-value=2.5e-05 Score=62.52 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=62.1
Q ss_pred cccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC-Cc---eeee---eeEEEEEEEeC-CeEE
Q psy5646 19 TKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK-NM---KKTG---FNQNFIISAEG-ARWK 90 (106)
Q Consensus 19 ~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~-~~---~~~~---F~qtFvL~~~~-~~y~ 90 (106)
..|..+|...|++||+++|.+.++-...+..+. .++.+.|.|.++-. ++ ..+. |++||+++|.+ .+-+
T Consensus 412 ~~g~~~Iv~aLs~LPkT~Hdl~s~vvDv~~~~~----~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~ 487 (585)
T KOG3763|consen 412 KHGACDIVVALSALPKTQHDLDSFVVDVWYQTG----NLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLA 487 (585)
T ss_pred hccchHHHHHHHhCccchhhhhhhheeeeeccc----ceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceE
Confidence 468899999999999999999986655555431 47899999988843 22 2344 99999999987 7999
Q ss_pred EEceeEEeeec
Q psy5646 91 IISDVFRLQQT 101 (106)
Q Consensus 91 I~nD~fR~~~~ 101 (106)
|.||.+-....
T Consensus 488 iv~d~Lfi~~~ 498 (585)
T KOG3763|consen 488 IVNDQLFIASA 498 (585)
T ss_pred EEeceeEEeec
Confidence 99998866553
No 9
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=97.45 E-value=0.0032 Score=39.47 Aligned_cols=87 Identities=18% Similarity=0.301 Sum_probs=61.4
Q ss_pred CCCCCCCceEEEcC--CccccHHHHHHHHHc----CCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEE--CCc-ee
Q psy5646 3 KLYKDEDAVLSWNG--HGTKGSQAIVKYISE----LPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVY--KNM-KK 73 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG--~~~~G~~~I~~~l~~----lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~--~~~-~~ 73 (106)
++|.+ +..+...+ ....|.++|.+++.. .+....++..+.++... ..+++...+.++. +++ ..
T Consensus 22 ~~~~~-d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~a~~~~~~~~~~~~~~~~~~ 93 (121)
T PF13474_consen 22 SLFSD-DFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSG-------DVAVVTGEFRLRFRNDGEEIE 93 (121)
T ss_dssp HHEEE-EEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEET-------TEEEEEEEEEEEEECTTCEEE
T ss_pred HhhCC-CEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECC-------CEEEEEEEEEEEEecCCccce
Confidence 46777 77777644 456799999888865 34667777777776532 2566666666654 344 35
Q ss_pred eeeeEEEEEEEeCCeEEEEceeEE
Q psy5646 74 TGFNQNFIISAEGARWKIISDVFR 97 (106)
Q Consensus 74 ~~F~qtFvL~~~~~~y~I~nD~fR 97 (106)
..+-.|+++...++.|+|.....-
T Consensus 94 ~~~r~t~v~~k~~~~Wki~h~H~S 117 (121)
T PF13474_consen 94 MRGRATFVFRKEDGGWKIVHIHWS 117 (121)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred eeEEEEEEEEEECCEEEEEEEEec
Confidence 678899999999999999877654
No 10
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=97.17 E-value=0.012 Score=35.81 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=57.2
Q ss_pred CCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc---eeeee
Q psy5646 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM---KKTGF 76 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~---~~~~F 76 (106)
.++|.| +..+...+....|++++.+.+.+-+ ....++.....++..+ ..++.....+...+. ....+
T Consensus 21 ~~~~~~-d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~gd-------~a~~~~~~~~~~~~~g~~~~~~~ 92 (107)
T PF14534_consen 21 ASLYAD-DFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVLGD-------TAVVRGRWTFTWRGDGEPVTIRG 92 (107)
T ss_dssp HTTEEE-EEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEETT-------EEEEEEEEEEEETTTTEEEEEEE
T ss_pred HhhhCC-CEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEECC-------EEEEEEEEEEEEecCCceEEEEE
Confidence 468888 8888887776779999999998744 4455566677777743 445555555554432 23566
Q ss_pred eEEEEEEEeCCeEEE
Q psy5646 77 NQNFIISAEGARWKI 91 (106)
Q Consensus 77 ~qtFvL~~~~~~y~I 91 (106)
..+.++...+++|.|
T Consensus 93 ~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 93 RFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEEEEEEETTEEEE
T ss_pred EEEEEEEEeCCEEEC
Confidence 777788888999987
No 11
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=97.01 E-value=0.014 Score=37.03 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=55.4
Q ss_pred CCCCCCCCceEE-EcCCccccHHHHHHHHHcC----C-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC-Cce--
Q psy5646 2 GKLYKDEDAVLS-WNGHGTKGSQAIVKYISEL----P-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK-NMK-- 72 (106)
Q Consensus 2 ~~~Y~~~~s~l~-~nG~~~~G~~~I~~~l~~l----p-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~-~~~-- 72 (106)
..+|.+ ++.+. ..|....|+++|.+.+... + .+++.+...+.+-..+ ....+.....+... +..
T Consensus 26 ~~~~~~-Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~A~~~~~~~~~~~~~~~~~ 98 (128)
T TIGR02246 26 ADLFTP-DGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGP------DLAIVHAIQTITAPGKGRAR 98 (128)
T ss_pred HHhhCC-CceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCC------CEEEEEEEEEEEcCCCCCCC
Confidence 357888 88876 5777889999999988754 2 3346666555554433 13333333333322 222
Q ss_pred -eeeeeEEEEEEEeCCeEEEEceeEE
Q psy5646 73 -KTGFNQNFIISAEGARWKIISDVFR 97 (106)
Q Consensus 73 -~~~F~qtFvL~~~~~~y~I~nD~fR 97 (106)
.....-++++...+++|+|..+.+-
T Consensus 99 ~~~~~~~t~~~~~~~g~W~I~~~h~s 124 (128)
T TIGR02246 99 PDAAVRLTFVAVKRDGRWLLAADHNT 124 (128)
T ss_pred CCcceEEEEEEEeeCCeEEEEeccCC
Confidence 1234457778888899999988653
No 12
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=94.63 E-value=0.19 Score=37.25 Aligned_cols=75 Identities=23% Similarity=0.257 Sum_probs=58.2
Q ss_pred ccHHHHHHHHHcCCCeeE---E--EeE--EEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEEEEEEeC---CeE
Q psy5646 20 KGSQAIVKYISELPPCDH---E--LKS--MDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEG---ARW 89 (106)
Q Consensus 20 ~G~~~I~~~l~~lp~~~h---~--i~s--~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtFvL~~~~---~~y 89 (106)
.|.+++..+|.+|..-.. . +.+ +.|-..+. |-++|.|+|++.-++.-.=-|-|.|=|...+ +.|
T Consensus 176 ~Ga~~vs~~Llsl~~e~~l~fnPNl~~~G~k~~~~ph------GlV~V~v~GTvH~~~~ClGiFEq~FGLiRdP~~~N~W 249 (262)
T PF15008_consen 176 EGAEEVSLRLLSLVKEERLFFNPNLDSDGVKGRISPH------GLVLVAVCGTVHRDNTCLGIFEQIFGLIRDPFAENNW 249 (262)
T ss_pred cCHHHHHHHHHHHhhcccEEECCCCCCCCcceEEcCC------CcEEEEEeeeEecCCceEeehhhhhhcccCccccCce
Confidence 799999999999862211 1 222 45555554 5799999999998877777899999999875 999
Q ss_pred EEEceeEEeee
Q psy5646 90 KIISDVFRLQQ 100 (106)
Q Consensus 90 ~I~nD~fR~~~ 100 (106)
+|.+=.+|+..
T Consensus 250 KiK~~~l~i~~ 260 (262)
T PF15008_consen 250 KIKFVNLRIRG 260 (262)
T ss_pred eEEEEEEEEEe
Confidence 99999888865
No 13
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=94.55 E-value=0.75 Score=30.52 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=58.8
Q ss_pred CCCCCCC-ceEEE--cCCccccHHHHHHHHHcCC-----CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC---Cc
Q psy5646 3 KLYKDED-AVLSW--NGHGTKGSQAIVKYISELP-----PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK---NM 71 (106)
Q Consensus 3 ~~Y~~~~-s~l~~--nG~~~~G~~~I~~~l~~lp-----~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~---~~ 71 (106)
++|.+ + +.+.+ -|+.+.|.+.|..+|.... ..+..|..-..|.+..+ ..++.-.-.+++. |.
T Consensus 26 ~ly~~-d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~~------~Ai~~gvy~f~~~d~~G~ 98 (128)
T PF08332_consen 26 KLYAP-DVAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGDN------AAIDAGVYTFQFVDKDGV 98 (128)
T ss_dssp HHEEE-EEEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEESTT------EEEEEEEEEEEEESTTSS
T ss_pred hhcCC-CeeEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCCC------EEEEeeEEEEEeecCCCC
Confidence 56777 7 67765 4789999999998887432 44556777777776552 4555555555543 22
Q ss_pred e-eeeeeEEEEEEEeCCeEEEEce
Q psy5646 72 K-KTGFNQNFIISAEGARWKIISD 94 (106)
Q Consensus 72 ~-~~~F~qtFvL~~~~~~y~I~nD 94 (106)
+ ...--+||+-...+++|.|.+-
T Consensus 99 ~~~~~areT~v~~~~~g~W~ivhh 122 (128)
T PF08332_consen 99 PRTVQARETRVWQKRDGKWKIVHH 122 (128)
T ss_dssp EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred eeeEEEeEEEEEEEeCCeEEEEEE
Confidence 2 2456789999999999999864
No 14
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=93.90 E-value=0.99 Score=28.58 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=52.9
Q ss_pred CCCCCCCCceEEEc--CC-ccccHHHHHHHHHcC-----C--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc
Q psy5646 2 GKLYKDEDAVLSWN--GH-GTKGSQAIVKYISEL-----P--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM 71 (106)
Q Consensus 2 ~~~Y~~~~s~l~~n--G~-~~~G~~~I~~~l~~l-----p--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~ 71 (106)
.+.+++ ++.+.+- |+ .....++..+.+.+- + ....+|.++|... + ...+.|.-.+.
T Consensus 26 ~~~f~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g--~-------~A~a~v~~~~~---- 91 (116)
T PF12893_consen 26 RSAFHP-DARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG--D-------VASAKVEYEFP---- 91 (116)
T ss_dssp GGGEEE-EEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET--T-------EEEEEEEEEEE----
T ss_pred HHhhCC-CcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC--C-------EEEEEEEEEEC----
Confidence 345666 7765543 33 334567777777652 1 6777888888773 2 23444443333
Q ss_pred eeeeeeEEEEEEEeCCeEEEEceeEE
Q psy5646 72 KKTGFNQNFIISAEGARWKIISDVFR 97 (106)
Q Consensus 72 ~~~~F~qtFvL~~~~~~y~I~nD~fR 97 (106)
...|...|.|...+++|.|.|-+|+
T Consensus 92 -~~~~~d~~~L~K~dg~WkIv~k~~~ 116 (116)
T PF12893_consen 92 -GFWFVDYFTLVKTDGGWKIVSKVYH 116 (116)
T ss_dssp -TEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -CCceEEEEEEEEECCEEEEEEEecC
Confidence 3479999999999999999998874
No 15
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=93.47 E-value=1.1 Score=27.92 Aligned_cols=44 Identities=20% Similarity=0.414 Sum_probs=34.5
Q ss_pred CCCCCCCCceEEEcCC---ccccHHHHHHHHHcC----CCeeEEEeEEEEEe
Q psy5646 2 GKLYKDEDAVLSWNGH---GTKGSQAIVKYISEL----PPCDHELKSMDIHR 46 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~---~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~ 46 (106)
..+|.+ ++.+.+.+- .+.|+++|.+.+... +.+.|.+....+..
T Consensus 29 ~~lft~-d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~ 79 (127)
T PF13577_consen 29 ADLFTE-DAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDV 79 (127)
T ss_dssp HTTEEE-EEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEE
T ss_pred HhccCC-cEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEE
Confidence 357788 899999874 789999999988775 37788877766664
No 16
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=93.05 E-value=0.77 Score=30.93 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=56.9
Q ss_pred CCCCCCCCceEEE-cCCccccHHHHHHHHHcCC---CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECC-----ce
Q psy5646 2 GKLYKDEDAVLSW-NGHGTKGSQAIVKYISELP---PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKN-----MK 72 (106)
Q Consensus 2 ~~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~lp---~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~-----~~ 72 (106)
.+||.| ++.+.- .|-+..|+++|.+.|...- ...++.+..+.|...+. =+..++|.....+ .+
T Consensus 32 ~~~Ytd-Dav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~G-------D~a~~~~~~~~~~~~~dg~~ 103 (137)
T COG4319 32 ADFYTD-DAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESG-------DVAFVTALLLLTGTKKDGPP 103 (137)
T ss_pred HHhcCC-ceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccC-------CEEEEEEeeeeeccCCCCcc
Confidence 468999 876554 5899999999999997753 44555566666644331 1333444444333 32
Q ss_pred -eeeeeEEEEEEEeC-CeEEEEcee
Q psy5646 73 -KTGFNQNFIISAEG-ARWKIISDV 95 (106)
Q Consensus 73 -~~~F~qtFvL~~~~-~~y~I~nD~ 95 (106)
...---|.+++++. ++|+|.-|.
T Consensus 104 ~~~~~Rat~v~rK~~dg~Wk~~~dh 128 (137)
T COG4319 104 ADLAGRATYVFRKEADGGWKLAHDH 128 (137)
T ss_pred hhheeeeEEEEEEcCCCCEEEEEec
Confidence 24455788888888 599999885
No 17
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=91.39 E-value=0.97 Score=26.60 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.6
Q ss_pred CCCCCCCCceEEEcCCccccHHHHHHHHHcCC
Q psy5646 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELP 33 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp 33 (106)
..+|++ +..+...+.+..|+++|.+++..+.
T Consensus 17 ~~~~~~-d~~~~~~~~~~~g~~~~~~~~~~~~ 47 (102)
T PF12680_consen 17 AALFAP-DAVFHDPGGTLRGREAIREFFEEFF 47 (102)
T ss_dssp HHTEEE-EEEEEETTSEEESHHHHHHHHHHHH
T ss_pred HHHcCC-CEEEEeCCCcccCHHHHHHHHHHHH
Confidence 368888 9888888778999999999998875
No 18
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=78.65 E-value=13 Score=23.02 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=24.9
Q ss_pred CCCCCCCCceEEE-c-CCccccHHHHHHHHHcCCC
Q psy5646 2 GKLYKDEDAVLSW-N-GHGTKGSQAIVKYISELPP 34 (106)
Q Consensus 2 ~~~Y~~~~s~l~~-n-G~~~~G~~~I~~~l~~lp~ 34 (106)
..+|.+ ++.+.+ . +.++.|+++|.+.+..++.
T Consensus 25 ~~l~ae-d~~~~~p~~~~~~~G~~~i~~~~~~~~~ 58 (122)
T cd00781 25 VALFAD-DATVEDPVGSPPRSGRAAIAAFYAQSLG 58 (122)
T ss_pred HHHcCC-CeEEeCCCCCCCccCHHHHHHHHHHHhc
Confidence 357888 888765 2 3468999999999998874
No 19
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=54.67 E-value=44 Score=19.93 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=17.2
Q ss_pred EEEEEECCceeeeeeEEEEEEEeCCeEEEE
Q psy5646 63 SGTVVYKNMKKTGFNQNFIISAEGARWKII 92 (106)
Q Consensus 63 ~G~v~~~~~~~~~F~qtFvL~~~~~~y~I~ 92 (106)
+..+.+.+..... .++.|...+++|+|.
T Consensus 84 ~v~~~~~~g~~~~--~~~~lvk~dg~Wkv~ 111 (111)
T PF12870_consen 84 TVKITYKDGKEKT--FTVPLVKEDGKWKVC 111 (111)
T ss_dssp EEEEEETTS-EEE--EEEEEEEETTEEEE-
T ss_pred EEEEEECCCCeeE--EEEEEEEECCEEEeC
Confidence 4444445433443 477888899999983
No 20
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=39.84 E-value=21 Score=21.39 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=26.0
Q ss_pred cCCccccHHHHHHHHHcCCCeeEEEeEEEEEeC
Q psy5646 15 NGHGTKGSQAIVKYISELPPCDHELKSMDIHRL 47 (106)
Q Consensus 15 nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~~ 47 (106)
.|..+..+.++..+|.+.+.....+..||..+-
T Consensus 36 ~GkklRs~~ev~~YL~~~~~~~~~~~~F~F~~~ 68 (77)
T smart00391 36 CGKKLRSKSELARYLHKNGDLSLDLECFDFNAT 68 (77)
T ss_pred CCCeeeCHHHHHHHHHhCCCcccccccccCcCC
Confidence 688889999999999999876666666665543
No 21
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=39.19 E-value=39 Score=21.07 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=34.9
Q ss_pred CCCCCCCceEEEcC-CccccHHHHHHHHH----cCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEE
Q psy5646 3 KLYKDEDAVLSWNG-HGTKGSQAIVKYIS----ELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVV 67 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG-~~~~G~~~I~~~l~----~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~ 67 (106)
++|.+ +......+ ....|++++.+.+. ..|..++++..+-+.. + .-.+....+|+-.
T Consensus 21 ~~~~~-d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~g--d-----~v~~~~~~~Gth~ 82 (126)
T PF07366_consen 21 ELVAP-DVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVVAEG--D-----RVAVRWTFTGTHT 82 (126)
T ss_dssp GTEEE-EEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEET--T-----EEEEEEEEEEEES
T ss_pred HhcCC-CEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEC--C-----EEEEEEEEEEeec
Confidence 56666 55555544 57788887766554 4688888777665542 1 1245566666654
No 22
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=34.62 E-value=18 Score=21.69 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=27.8
Q ss_pred cCCccccHHHHHHHHHcCCCeeEEEeEEEEEe
Q psy5646 15 NGHGTKGSQAIVKYISELPPCDHELKSMDIHR 46 (106)
Q Consensus 15 nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~ 46 (106)
+|..+..+.++..+|.+.|.....+..||.++
T Consensus 34 ~Gkk~RS~~ev~~yL~~~~~~~~~~~~FdF~~ 65 (77)
T cd01396 34 TGKKFRSKVELARYLEKNGPTSLDLSDFDFTV 65 (77)
T ss_pred CCCEEECHHHHHHHHHhCCCCCCcHhHcccCC
Confidence 68888999999999999987778888888775
No 23
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=33.92 E-value=1.5e+02 Score=20.14 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=40.2
Q ss_pred CCccccHHHHHHHHHcCC-CeeEEEeEEEEEeCCcccccCc--eeEEEEEEEEEEECCceeeeeeEEEEEEEe
Q psy5646 16 GHGTKGSQAIVKYISELP-PCDHELKSMDIHRLPEEAAQNQ--IAYLISTSGTVVYKNMKKTGFNQNFIISAE 85 (106)
Q Consensus 16 G~~~~G~~~I~~~l~~lp-~~~h~i~s~D~q~~~~~~~~~~--~~ili~V~G~v~~~~~~~~~F~qtFvL~~~ 85 (106)
|....|++.|.+-|.+.+ ....++.+.||--+-+.....- =+-.+=|+|. + ...|-.+|.+...
T Consensus 49 ~~~~ygk~~i~~EL~en~~a~~vkvg~~~caYs~E~f~eeg~~YtsH~Wvtg~----~--~~sfeCSFTv~kg 115 (153)
T PF12712_consen 49 GSAQYGKECIRQELKENPSAKLVKVGNWECAYSKEMFQEEGAYYTSHLWVTGE----G--DVSFECSFTVPKG 115 (153)
T ss_dssp -STTHHHHHHHHHHHH-TT-EEEEETTEEEEEEEEEEEETTEEEEEEEEEEEE----T--TEEEEEEEEEETT
T ss_pred ccccchHHHHHHHHHhCCCcceEEeccEEEEEEhhhhhccCeeEEEEEEEEec----C--ceEEEEEEEccCC
Confidence 456789999999999888 5888999999987655422110 0113344442 2 3678888887654
No 24
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=32.87 E-value=1.1e+02 Score=18.36 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=29.1
Q ss_pred CceEEE--cCCccccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEE
Q psy5646 9 DAVLSW--NGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSG 64 (106)
Q Consensus 9 ~s~l~~--nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G 64 (106)
.|.|+| +|.++.|..+. -....+...-.+++-.+|..+. .+..+.+.+
T Consensus 14 ~A~I~W~k~~~~l~~~~~~---~~~~~~~~t~~S~L~~~p~~eD-----dG~~~~C~a 63 (82)
T cd05883 14 AATIRWFKGNKELTGKSTV---EETWSRMFTVTSQLMLKVTKED-----DGVPVICLV 63 (82)
T ss_pred CCEEEEEECCEECcCcccc---eeccCCCcEEEEEEEEECchhh-----CCCEEEEEE
Confidence 889998 77788776322 1122345555666777777764 355555555
No 25
>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function.; PDB: 3KZT_A.
Probab=31.72 E-value=1.3e+02 Score=19.17 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEECCceeeeeeEEEEEEEeCCeEEEEc
Q psy5646 66 VVYKNMKKTGFNQNFIISAEGARWKIIS 93 (106)
Q Consensus 66 v~~~~~~~~~F~qtFvL~~~~~~y~I~n 93 (106)
|.++.....+-.-.+.|..++|+|+|.+
T Consensus 88 v~~G~~~~~~~~~~~~l~ke~g~WkI~~ 115 (120)
T PF12883_consen 88 VTFGKNNEKKQTVIVCLVKENGRWKIDD 115 (120)
T ss_dssp ETTTSTT-EEEEEEEEEEEETTEEEEEE
T ss_pred EEEecCCCCCEEEEEEEEEECCEEEEEE
Confidence 3443323455567888999999999975
No 26
>PF07029 CryBP1: CryBP1 protein; InterPro: IPR009751 This family consists of several CryBP1 like proteins from Bacillus thuringiensis and Paenibacillus popilliae. Members of this family are thought to be involved in the overall toxicity of the bacteria to their hosts [,].
Probab=29.91 E-value=1.8e+02 Score=20.15 Aligned_cols=28 Identities=7% Similarity=0.277 Sum_probs=22.1
Q ss_pred EEEeEEEEEeCCcccccCceeEEEEEEEEEEEC
Q psy5646 37 HELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK 69 (106)
Q Consensus 37 h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~ 69 (106)
..+..+..+|+.++ .+=++.++|.+++.
T Consensus 132 V~v~dl~v~p~~e~-----~c~~vkitG~F~f~ 159 (161)
T PF07029_consen 132 VVVCDLQVKPIQED-----DCQFVKITGKFQFH 159 (161)
T ss_pred EEEEEeEEEEcccC-----CceEEEEEEEEEEE
Confidence 35778899998775 46799999999874
No 27
>PF15517 TBPIP_N: TBP-interacting protein N-terminus; PDB: 2CZR_A.
Probab=28.33 E-value=61 Score=20.42 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=14.9
Q ss_pred EEEEEEEeCCeEEEEceeEEee
Q psy5646 78 QNFIISAEGARWKIISDVFRLQ 99 (106)
Q Consensus 78 qtFvL~~~~~~y~I~nD~fR~~ 99 (106)
--.+..|+.+.|||.|..|=+.
T Consensus 63 i~iivvP~kgtFYi~NGaFIms 84 (99)
T PF15517_consen 63 IDIIVVPGKGTFYINNGAFIMS 84 (99)
T ss_dssp EEEEEES-TT-EEEETTEEEEE
T ss_pred eEEEEECCCCeEEEeCceEEEE
Confidence 3456678889999999988543
No 28
>PF12636 DUF3781: Protein of unknown function (DUF3781); InterPro: IPR024229 This family of functionally uncharacterised proteins is found in bacteria and archaea. These proteins are typically between 82 and 98 amino acids in length and have two conserved sequence motifs: GKNWY and ITA.
Probab=28.30 E-value=44 Score=20.11 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=14.7
Q ss_pred eCCeEEEEceeEEeeecCCC
Q psy5646 85 EGARWKIISDVFRLQQTPVN 104 (106)
Q Consensus 85 ~~~~y~I~nD~fR~~~~~~~ 104 (106)
.|+.|||.+|-.++.--+.+
T Consensus 47 kGKN~Yv~~~~~~iTvNa~s 66 (73)
T PF12636_consen 47 KGKNWYVTIDDIIITVNAHS 66 (73)
T ss_pred CCceEEEecCCEEEEEecCc
Confidence 46899999998877655443
No 29
>PF14930 Qn_am_d_aII: Quinohemoprotein amine dehydrogenase, alpha subunit domain II; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=27.56 E-value=1.2e+02 Score=19.53 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=16.5
Q ss_pred EEEEECCceeeeeeEEEEEEEeC----CeEEEEce
Q psy5646 64 GTVVYKNMKKTGFNQNFIISAEG----ARWKIISD 94 (106)
Q Consensus 64 G~v~~~~~~~~~F~qtFvL~~~~----~~y~I~nD 94 (106)
|.++.++.+.| |+|-|.+.+ +.|+..+.
T Consensus 64 asl~~g~~~~R---QV~a~~~dg~~l~GR~F~~~~ 95 (108)
T PF14930_consen 64 ASLKIGGVKMR---QVFALSEDGGSLSGRWFEADH 95 (108)
T ss_dssp EEEEETTEEEE---EEEEEE--TTEEEEEEEETTE
T ss_pred EEEeeCCEEhh---hEEEeeccCCceeEEEEeccC
Confidence 34445554444 999999876 67776553
No 30
>PF13363 BetaGal_dom3: Beta-galactosidase, domain 3; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A.
Probab=25.61 E-value=34 Score=20.80 Aligned_cols=12 Identities=33% Similarity=0.734 Sum_probs=7.8
Q ss_pred CceEEEcCCccc
Q psy5646 9 DAVLSWNGHGTK 20 (106)
Q Consensus 9 ~s~l~~nG~~~~ 20 (106)
-+.++|||+++.
T Consensus 57 v~~l~wNG~~v~ 68 (79)
T PF13363_consen 57 VSSLTWNGKPVS 68 (79)
T ss_dssp --EEEETTEEE-
T ss_pred ccEEEECCEEcc
Confidence 357999998765
No 31
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=24.68 E-value=2.2e+02 Score=18.90 Aligned_cols=86 Identities=16% Similarity=0.305 Sum_probs=51.6
Q ss_pred CCCCCCceEEEc-CCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeee-eeEE
Q psy5646 4 LYKDEDAVLSWN-GHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTG-FNQN 79 (106)
Q Consensus 4 ~Y~~~~s~l~~n-G~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~-F~qt 79 (106)
|... ...+.+. |...+|.++|..+-..-| .....+........... .-+|+=.+..++.+.++ =+||
T Consensus 35 Fw~~-p~TvRyg~~E~LyG~~aI~aFR~~R~~~~~~R~l~~~~itt~G~d--------~A~v~tef~r~~~~~~GRQsQt 105 (125)
T PF11533_consen 35 FWDD-PRTVRYGAGENLYGHDAIRAFRAARPGGGPARTLERTVITTFGRD--------FATVSTEFRRDGSGRIGRQSQT 105 (125)
T ss_dssp B--S-TT-EEEETTEEEESHHHHHHHHHHS--TTTT-EEEEEEEEEETTT--------EEEEEEEEEETTECCEEEEEEE
T ss_pred hccC-CceEEECCCccccCHHHHHHHHhcCCCCCCCcEEEEEEEEEecCc--------eEEEEEEEEECCCCceeEeEEE
Confidence 4444 7788887 568899999999998875 33334544444444442 33455567766664333 2677
Q ss_pred EEEEEeCCeEEEEceeEEeee
Q psy5646 80 FIISAEGARWKIISDVFRLQQ 100 (106)
Q Consensus 80 FvL~~~~~~y~I~nD~fR~~~ 100 (106)
++-. +++|+|..=..-+.+
T Consensus 106 Wvr~--~~gWrIvaAHVS~~~ 124 (125)
T PF11533_consen 106 WVRF--PDGWRIVAAHVSLMD 124 (125)
T ss_dssp EEEE--TTEEEEEEEEEEEE-
T ss_pred EEEC--CCCEEEEEEEEeecc
Confidence 7654 458999876665543
No 32
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=24.25 E-value=1.4e+02 Score=18.44 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=18.5
Q ss_pred EEEEEEEEEECC----ceeeeeeEEEEEEE
Q psy5646 59 LISTSGTVVYKN----MKKTGFNQNFIISA 84 (106)
Q Consensus 59 li~V~G~v~~~~----~~~~~F~qtFvL~~ 84 (106)
.++|.|.-.... ...|.|.++|.|-.
T Consensus 39 ~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~ 68 (91)
T cd06480 39 FVEVSGKHEEQQKEGGIVSKNFTKKIQLPP 68 (91)
T ss_pred EEEEEEEECcccCCCCEEEEEEEEEEECCC
Confidence 477888766431 24789999999964
No 33
>PF05629 Nanovirus_C8: Nanovirus component 8 (C8) protein; InterPro: IPR008706 This family consists of a group of 17.4 kDa nanovirus proteins which are highly related to the Faba bean necrotic yellows virus component 8 protein whose function is unknown [].
Probab=22.66 E-value=2.5e+02 Score=18.88 Aligned_cols=43 Identities=16% Similarity=0.083 Sum_probs=29.0
Q ss_pred EEEEEEEEEEECCceeeeeeEEEEEEEeC----------CeEEEEceeEEeee
Q psy5646 58 YLISTSGTVVYKNMKKTGFNQNFIISAEG----------ARWKIISDVFRLQQ 100 (106)
Q Consensus 58 ili~V~G~v~~~~~~~~~F~qtFvL~~~~----------~~y~I~nD~fR~~~ 100 (106)
+-+...|.+.-.+...|+|-|.=+...++ ++|.-+||..-|..
T Consensus 50 ~~v~FnGSF~G~NRNVRG~l~vsm~~DDG~~RPi~~vP~GGY~YHnDy~Y~eG 102 (153)
T PF05629_consen 50 CSVSFNGSFYGSNRNVRGQLQVSMRQDDGVMRPIGYVPIGGYLYHNDYGYYEG 102 (153)
T ss_pred EEEEecceeecCCcceeeEEEEEEEcCCCeeeeEEEEeecceEEeccceEEec
Confidence 34445566654444688998887765442 88999999877654
No 34
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=21.85 E-value=1.7e+02 Score=17.54 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=16.5
Q ss_pred EEEEEEEEEEC--Cc--eeeeeeEEEEEEE
Q psy5646 59 LISTSGTVVYK--NM--KKTGFNQNFIISA 84 (106)
Q Consensus 59 li~V~G~v~~~--~~--~~~~F~qtFvL~~ 84 (106)
.++|+|.-... +. ..|.|+++|-|-.
T Consensus 31 ~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~ 60 (83)
T cd06477 31 WLLIKGQHGVRMDEHGFISRSFTRQYQLPD 60 (83)
T ss_pred EEEEEEEEccccCCCCEEEEEEEEEEECCC
Confidence 45566665432 11 4679999999964
No 35
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=21.38 E-value=58 Score=22.02 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=16.0
Q ss_pred CCCCCceEEEcCCccccHHHHHHHHHc
Q psy5646 5 YKDEDAVLSWNGHGTKGSQAIVKYISE 31 (106)
Q Consensus 5 Y~~~~s~l~~nG~~~~G~~~I~~~l~~ 31 (106)
|.+ +|.-.--..-+.|+++|..+|..
T Consensus 35 YT~-Ds~WRNR~eF~~GR~~I~~FLtr 60 (143)
T PF07080_consen 35 YTP-DSVWRNRDEFLTGREEIVAFLTR 60 (143)
T ss_dssp EEE-EEEEEETTEEE-SHHHHHHHHHH
T ss_pred cCC-CCcccCcccccCcHHHHHHHHHH
Confidence 444 44333233468999999998864
No 36
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=21.38 E-value=94 Score=25.24 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=14.4
Q ss_pred CCCCCCCCceEEEcCCccc
Q psy5646 2 GKLYKDEDAVLSWNGHGTK 20 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~~~ 20 (106)
.-+|+|....+.|||+++.
T Consensus 370 tGL~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 370 TGLYQPQSGEILLDGKPVS 388 (546)
T ss_pred hcccCCCCCceeECCccCC
Confidence 4589993457999999765
No 37
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=21.25 E-value=76 Score=21.61 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=17.1
Q ss_pred CceEEEcCCccccHHH--HHHHHHc
Q psy5646 9 DAVLSWNGHGTKGSQA--IVKYISE 31 (106)
Q Consensus 9 ~s~l~~nG~~~~G~~~--I~~~l~~ 31 (106)
+++++++|+.+.|.+. |...|.+
T Consensus 44 ~~tVti~G~~Lege~K~~~I~~FNe 68 (149)
T PF10787_consen 44 NTTVTIDGKRLEGEDKSQIIDQFNE 68 (149)
T ss_pred ceEEEECCeecCchHHHHHHHHHhH
Confidence 7889999999999764 3455544
No 38
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=21.00 E-value=88 Score=17.50 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.2
Q ss_pred eEEEcCCccccHHHHHHHHH
Q psy5646 11 VLSWNGHGTKGSQAIVKYIS 30 (106)
Q Consensus 11 ~l~~nG~~~~G~~~I~~~l~ 30 (106)
.+..||..+-|-++|.++|.
T Consensus 53 ~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 53 QVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEECCEEEeCHHHHHHHhC
Confidence 46678888999999998863
No 39
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=20.78 E-value=1.6e+02 Score=15.98 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=18.0
Q ss_pred ceEEEcCCccccH--HHHHHHHHcCC
Q psy5646 10 AVLSWNGHGTKGS--QAIVKYISELP 33 (106)
Q Consensus 10 s~l~~nG~~~~G~--~~I~~~l~~lp 33 (106)
-.+..||.++.+. +++.+.+...+
T Consensus 36 ~I~~Ing~~v~~~~~~~~~~~l~~~~ 61 (70)
T cd00136 36 VILAVNGTDVKNLTLEDVAELLKKEV 61 (70)
T ss_pred EEEEECCEECCCCCHHHHHHHHhhCC
Confidence 3455788888877 88888888765
Done!