Query psy5646
Match_columns 106
No_of_seqs 109 out of 635
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:02:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gy7_A Nuclear transport facto 100.0 5.1E-35 1.8E-39 192.5 12.5 96 1-102 27-125 (125)
2 3nv0_B NTF2-related export pro 100.0 3.8E-35 1.3E-39 199.4 12.1 98 1-100 55-154 (154)
3 1gy6_A Nuclear transport facto 100.0 1.7E-34 5.9E-39 190.5 12.4 95 1-102 29-125 (127)
4 1jkg_A P15; NTF2-like domain, 100.0 2.6E-34 8.8E-39 192.3 12.8 101 1-102 35-139 (140)
5 1zo2_A NTF2, nuclear transport 100.0 2.4E-34 8.2E-39 190.3 11.0 94 1-101 33-129 (129)
6 3ujm_A Rasputin; NTF2-like fol 100.0 1.9E-33 6.4E-38 183.9 10.6 92 1-99 25-120 (120)
7 3q90_A RAS GTPase-activating p 100.0 1.6E-33 5.3E-38 188.6 10.1 94 1-101 31-137 (140)
8 2qiy_A UBP3-associated protein 100.0 1.5E-31 5.3E-36 181.3 10.6 97 1-102 33-150 (154)
9 1of5_A MRNA export factor MEX6 99.9 8E-24 2.7E-28 150.7 10.9 97 1-103 32-205 (221)
10 1jkg_B TAP; NTF2-like domain, 99.9 1.9E-23 6.3E-28 151.2 11.1 95 1-102 37-171 (250)
11 1q40_B MEX67, mRNA export fact 99.9 3.3E-23 1.1E-27 147.4 9.5 98 1-104 35-212 (219)
12 1q42_A MTR2, mRNA transport re 99.8 5.8E-21 2E-25 132.2 5.9 77 3-85 60-146 (201)
13 3nv0_A Nuclear RNA export fact 99.8 6.6E-19 2.3E-23 124.2 9.7 77 20-102 98-186 (205)
14 1of5_B MTR2, YKL186C, mRNA tra 99.7 2E-16 6.7E-21 108.4 7.2 78 2-85 43-121 (184)
15 4i4k_A Uncharacterized protein 97.9 7.7E-05 2.6E-09 48.5 8.7 88 2-96 41-137 (143)
16 3cu3_A Domain of unknown funct 97.5 0.00048 1.6E-08 45.6 7.6 91 2-99 38-138 (172)
17 3gzr_A Uncharacterized protein 97.5 0.00098 3.3E-08 43.5 8.6 94 1-101 27-132 (146)
18 3hx8_A MLR2180 protein, putati 97.1 0.0076 2.6E-07 37.0 9.6 88 2-97 28-124 (129)
19 3d9r_A Ketosteroid isomerase-l 96.8 0.024 8.1E-07 35.0 9.7 91 2-99 33-133 (135)
20 3h51_A Putative calcium/calmod 96.6 0.055 1.9E-06 34.9 11.1 90 2-100 42-141 (156)
21 3rob_A Uncharacterized conserv 96.4 0.027 9.1E-07 36.4 8.4 88 2-96 39-134 (139)
22 3gwr_A Putative calcium/calmod 96.4 0.049 1.7E-06 35.2 9.5 90 2-99 30-128 (144)
23 2gxf_A Hypothetical protein YY 96.3 0.014 4.9E-07 37.0 6.7 87 2-96 25-121 (142)
24 2ux0_A Calcium-calmodulin depe 96.3 0.073 2.5E-06 33.5 9.8 89 3-100 36-138 (143)
25 3bb9_A Putative orphan protein 96.2 0.036 1.2E-06 35.4 7.9 85 3-95 53-146 (148)
26 3b7c_A Uncharacterized protein 95.7 0.17 6E-06 31.1 10.9 84 3-96 28-120 (122)
27 3duk_A NTF2-like protein of un 95.5 0.14 4.8E-06 32.2 8.5 83 2-98 34-123 (125)
28 2chc_A Protein RV3472; hypothe 95.3 0.31 1.1E-05 31.5 10.8 92 2-99 36-132 (170)
29 2rfr_A Uncharacterized protein 95.2 0.33 1.1E-05 30.7 10.2 92 2-101 41-144 (155)
30 3f7s_A Uncharacterized NTF2-li 95.1 0.32 1.1E-05 30.4 11.8 90 2-99 30-128 (142)
31 2rcd_A Uncharacterized protein 94.6 0.45 1.5E-05 29.5 10.0 85 3-97 37-125 (129)
32 3cnx_A Uncharacterized protein 94.3 0.37 1.3E-05 32.3 8.4 78 16-100 65-157 (170)
33 3mg1_A OCP, orange carotenoid 93.9 0.22 7.5E-06 36.8 7.0 86 3-96 215-306 (323)
34 3b8l_A Uncharacterized protein 93.5 0.88 3E-05 29.1 9.3 94 2-100 51-153 (163)
35 3er7_A Uncharacterized NTF2-li 93.4 0.086 2.9E-06 33.9 3.8 90 2-98 29-125 (131)
36 2owp_A Hypothetical protein BX 93.3 0.91 3.1E-05 28.6 10.2 88 3-100 34-127 (129)
37 2r4i_A Uncharacterized protein 93.1 0.81 2.8E-05 27.4 9.9 85 4-96 30-119 (123)
38 3blz_A NTF2-like protein of un 90.3 2.1 7E-05 26.4 9.2 85 2-100 34-126 (128)
39 3soy_A NTF2-like superfamily p 89.9 2 6.8E-05 27.3 7.4 89 2-97 32-134 (145)
40 3fka_A Uncharacterized NTF-2 l 89.3 0.65 2.2E-05 28.8 4.6 80 4-99 33-120 (120)
41 3a76_A Gamma-hexachlorocyclohe 88.4 3.7 0.00013 26.7 10.0 91 2-99 53-154 (176)
42 1tp6_A Hypothetical protein PA 85.3 4.9 0.00017 24.9 9.2 85 3-95 34-125 (128)
43 3jum_A Phenazine biosynthesis 84.2 4.3 0.00015 27.5 6.7 71 2-78 62-142 (185)
44 3ke7_A Putative ketosteroid is 83.9 6.2 0.00021 25.0 11.4 86 3-99 37-130 (134)
45 3ef8_A Putative scyalone dehyd 81.7 7.5 0.00026 24.4 9.0 92 2-99 33-133 (150)
46 3f14_A Uncharacterized NTF2-li 80.2 7.2 0.00025 23.2 6.9 68 4-83 24-100 (112)
47 4h3u_A Hypothetical protein; s 79.7 9.1 0.00031 24.1 6.9 31 2-33 47-79 (158)
48 3dxo_A Uncharacterized snoal-l 76.5 0.95 3.3E-05 27.8 1.2 44 2-46 29-77 (121)
49 1ohp_A Steroid delta-isomerase 74.5 8 0.00027 22.4 5.1 31 2-33 27-59 (125)
50 3lyg_A NTF2-like protein of un 73.5 2.3 8E-05 27.0 2.5 31 2-33 24-60 (120)
51 3h3h_A Uncharacterized snoal-l 71.8 2.4 8E-05 25.6 2.2 40 2-42 30-82 (122)
52 3fsd_A NTF2-like protein of un 66.1 20 0.00067 21.8 9.6 87 3-96 37-130 (134)
53 2f86_B Hypothetical protein K1 66.0 22 0.00076 22.4 10.0 80 15-99 49-133 (143)
54 3dm8_A Uncharacterized protein 65.2 21 0.00073 21.9 6.3 30 3-33 27-64 (143)
55 3ejv_A Uncharacterized protein 65.0 26 0.00089 22.9 7.5 44 2-46 48-107 (179)
56 2rgq_A Domain of unknown funct 64.7 22 0.00075 21.9 11.1 88 3-98 33-127 (144)
57 3gzb_A Putative snoal-like pol 60.6 7 0.00024 25.5 2.8 62 1-70 41-104 (154)
58 3f7x_A Putative polyketide cyc 60.2 28 0.00097 21.7 8.6 39 3-42 43-83 (151)
59 3i0y_A Putative polyketide cyc 57.2 28 0.00097 20.8 8.7 31 3-34 31-62 (140)
60 3fh1_A Uncharacterized NTF2-li 55.3 31 0.0011 20.6 5.5 38 3-41 40-85 (129)
61 3en8_A Uncharacterized NTF-2 l 52.8 36 0.0012 20.6 10.2 34 1-35 26-61 (128)
62 3dmc_A NTF2-like protein; stru 52.7 37 0.0013 20.8 9.6 31 2-33 34-68 (134)
63 3grd_A Uncharacterized NTF2-su 50.1 38 0.0013 20.1 5.0 29 4-33 28-62 (134)
64 3ec9_A Uncharacterized NTF2-li 50.1 39 0.0013 20.2 5.6 30 3-33 35-70 (140)
65 1s5a_A Hypothetical protein YE 48.3 43 0.0015 20.1 6.6 31 2-33 32-68 (150)
66 3fgy_A Uncharacterized NTF2-li 47.4 13 0.00044 22.3 2.4 30 3-33 28-62 (135)
67 2k54_A Protein ATU0742; protei 45.4 10 0.00034 22.6 1.7 38 3-41 26-68 (123)
68 1nww_A Limonene-1,2-epoxide hy 44.6 50 0.0017 19.9 10.8 31 2-33 44-75 (149)
69 1oh0_A Steroid delta-isomerase 44.6 2.2 7.4E-05 25.7 -1.6 30 3-33 30-61 (131)
70 3hk4_A MLR7391 protein; NTF2-l 44.1 55 0.0019 20.3 6.5 80 2-87 43-127 (136)
71 2gex_A SNOL; alpha+beta barrel 41.0 36 0.0012 20.9 3.9 40 3-43 27-70 (152)
72 3f40_A Uncharacterized NTF2-li 40.3 57 0.002 19.3 4.8 31 3-34 29-59 (114)
73 3ff0_A Phenazine biosynthesis 38.9 80 0.0027 20.6 6.8 50 18-72 61-114 (163)
74 3mso_A Steroid delta-isomerase 37.2 8.7 0.0003 24.2 0.4 32 1-33 30-63 (143)
75 3f9s_A Putative polyketide cyc 33.0 47 0.0016 20.1 3.4 41 3-44 30-79 (146)
76 3ff2_A Uncharacterized cystati 32.9 73 0.0025 18.4 6.4 39 3-43 25-70 (117)
77 1z1s_A Hypothetical protein PA 31.8 94 0.0032 19.3 7.2 30 3-33 46-81 (163)
78 1ub1_A MECP2, attachment regio 25.4 12 0.0004 24.2 -0.5 32 15-46 66-97 (133)
79 3vxv_A Methyl-CPG-binding doma 25.4 9.1 0.00031 21.8 -0.9 31 15-45 34-64 (69)
80 3rga_A Epoxide hydrolase; NTF2 24.4 50 0.0017 23.1 2.6 31 2-33 160-192 (283)
81 3c2i_A Methyl-CPG-binding prot 24.0 7.7 0.00026 23.7 -1.5 32 15-46 52-83 (97)
82 2bng_A MB2760; epoxide hydrola 23.5 1.3E+02 0.0044 18.1 9.6 31 3-34 38-69 (149)
83 2imj_A Hypothetical protein DU 23.1 33 0.0011 22.8 1.3 27 5-32 42-68 (166)
84 2f99_A Aklanonic acid methyl e 23.0 58 0.002 20.0 2.5 41 2-43 33-80 (153)
85 1mby_A SAK, serine/threonine k 22.3 96 0.0033 18.4 3.2 22 22-43 63-84 (88)
86 1pfs_A PF3 SSDBP, PF3 single-s 22.2 1.2E+02 0.0042 17.4 4.3 25 57-81 2-29 (78)
87 1fov_A Glutaredoxin 3, GRX3; a 21.8 62 0.0021 17.2 2.3 21 11-31 54-74 (82)
No 1
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=100.00 E-value=5.1e-35 Score=192.53 Aligned_cols=96 Identities=22% Similarity=0.510 Sum_probs=90.2
Q ss_pred CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc-eeeeee
Q psy5646 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM-KKTGFN 77 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~-~~~~F~ 77 (106)
|++||++ +|.++|+|+.+.|+++|.++|.+|| +++|+|.++||||+..+ ++|+|+|+|.++.+++ ++|+|+
T Consensus 27 L~~~Y~~-~S~~s~~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~-----~gili~V~G~~~~~~~~~~~~F~ 100 (125)
T 1gy7_A 27 LGNLYRN-ESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPY-----GDVLVMITGDLLIDEEQNPQRFS 100 (125)
T ss_dssp GGGGEEE-EEEEEETTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTT-----SCEEEEEEEEEEETTCSSCEEEE
T ss_pred HHHhhCC-CcEEEECCcEecCHHHHHHHHHhCCCcceEEEEEEEEEEEecCC-----CeEEEEEEEEEEECCCCCCccEe
Confidence 6789999 9999999999999999999999999 89999999999999642 5899999999999988 899999
Q ss_pred EEEEEEEeCCeEEEEceeEEeeecC
Q psy5646 78 QNFIISAEGARWKIISDVFRLQQTP 102 (106)
Q Consensus 78 qtFvL~~~~~~y~I~nD~fR~~~~~ 102 (106)
|||+|+|++++|+|.||+|||++++
T Consensus 101 qtF~L~p~~~~~~I~nD~fr~~~~~ 125 (125)
T 1gy7_A 101 QVFHLIPDGNSYYVFNDIFRLNYSA 125 (125)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECC-
T ss_pred EEEEEEEeCCEEEEEEEEEEEecCC
Confidence 9999999999999999999999864
No 2
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=100.00 E-value=3.8e-35 Score=199.36 Aligned_cols=98 Identities=30% Similarity=0.608 Sum_probs=90.9
Q ss_pred CCCCCCCCCceEEEcCCccccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccC--ceeEEEEEEEEEEECCceeeeeeE
Q psy5646 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQN--QIAYLISTSGTVVYKNMKKTGFNQ 78 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~--~~~ili~V~G~v~~~~~~~~~F~q 78 (106)
|++||.+ +|.++|||+.+.|+++|.++|++||.++|+|.++||||+++ +.++ .++|+|+|+|.++.+++++|+|+|
T Consensus 55 L~~fY~d-~S~ls~~g~~~~G~~~I~~~l~~Lp~~~h~I~s~D~qp~~~-~~~~q~~~~ilI~V~G~l~~~~~~~r~F~Q 132 (154)
T 3nv0_B 55 IGFLYTQ-VSNAVWNGNPINGYDSICEFMKALPSTQHDIQSLDAQRLPE-GVTGDMSGGMLLNVAGAVTVDGDSKRAFTQ 132 (154)
T ss_dssp GGGGEEE-EEEEEETTEEEESHHHHHHHHHHSCCEEEEEEEEEEEECCT-TCCGGGTTCEEEEEEEEEEETTSCCEEEEE
T ss_pred HHHHhcC-CcEEEECCeecccHHHHHHHHHhCCCeEEEEEEEEEEEcCc-cccCCCCCeEEEEEEEEEEECCCCceeEEE
Confidence 6789999 99999999999999999999999999999999999999995 2222 158999999999999999999999
Q ss_pred EEEEEEeCCeEEEEceeEEeee
Q psy5646 79 NFIISAEGARWKIISDVFRLQQ 100 (106)
Q Consensus 79 tFvL~~~~~~y~I~nD~fR~~~ 100 (106)
||+|+|++++|||.||+|||+|
T Consensus 133 tFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 133 TLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp EEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEEeCCEEEEEeeEEEecC
Confidence 9999999999999999999986
No 3
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=100.00 E-value=1.7e-34 Score=190.45 Aligned_cols=95 Identities=27% Similarity=0.539 Sum_probs=90.5
Q ss_pred CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ 78 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q 78 (106)
|++||++ +|.++|+|+.+.|+++|.++|++|| +++|+|+++||||+++ ++|+|+|+|.++.+++++|+|+|
T Consensus 29 L~~~Y~~-~S~ls~~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~------~~ili~V~G~~~~~~~~~~~F~q 101 (127)
T 1gy6_A 29 LGAIYID-ASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPD------SCIISMVVGQLKADEDPIMGFHQ 101 (127)
T ss_dssp GGGGEEE-EEEEEETTEEEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTT------SCEEEEEEEEEEETTSCCEEEEE
T ss_pred HHHhhCC-CcEEEECCccccCHHHHHHHHHhCCCcceEEEEEEEEEEEeCC------CcEEEEEEEEEEECCCCcceEeE
Confidence 6789999 9999999999999999999999999 5899999999999965 58999999999999999999999
Q ss_pred EEEEEEeCCeEEEEceeEEeeecC
Q psy5646 79 NFIISAEGARWKIISDVFRLQQTP 102 (106)
Q Consensus 79 tFvL~~~~~~y~I~nD~fR~~~~~ 102 (106)
||+|+|++++|+|.||+|||+++.
T Consensus 102 tF~L~p~~~~~~I~nD~fr~~~~~ 125 (127)
T 1gy6_A 102 MFLLKNINDAWVCTNDMFRLALHN 125 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEECCCC
T ss_pred EEEEEEeCCEEEEEEEEEEEEccc
Confidence 999999999999999999999974
No 4
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=100.00 E-value=2.6e-34 Score=192.32 Aligned_cols=101 Identities=33% Similarity=0.671 Sum_probs=92.6
Q ss_pred CCCCCCCCCceEEEcCCccccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEE
Q psy5646 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNF 80 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtF 80 (106)
|++||++ +|.++|||+.+.|+++|.++|.+||.++|+|.++||||+++.++++.++|+|+|+|.++.+++++|.|+|||
T Consensus 35 L~~~Y~~-~S~ls~~g~~~~G~~~I~~~l~~Lp~~~h~i~s~d~q~~~~~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtF 113 (140)
T 1jkg_A 35 LSRLYMG-TATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNF 113 (140)
T ss_dssp GGGGEEE-EEEEEETTEEEESHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTCCEEEEEEEEEEEETTSCCEEEEEEE
T ss_pred HHHhcCC-CcEEEECCeeecCHHHHHHHHHhCCCceeEEEEEEEEEcCCcccCCCCeEEEEEEEEEEECCCCceeeeEEE
Confidence 5789999 999999999999999999999999999999999999999864333347999999999999999999999999
Q ss_pred EEEEeC----CeEEEEceeEEeeecC
Q psy5646 81 IISAEG----ARWKIISDVFRLQQTP 102 (106)
Q Consensus 81 vL~~~~----~~y~I~nD~fR~~~~~ 102 (106)
+|+|++ ++|+|.||+|||++++
T Consensus 114 ~L~p~~~p~~~~~~I~nD~frl~~~~ 139 (140)
T 1jkg_A 114 ILTAQASPSNTVWKIASDCFRFQDWA 139 (140)
T ss_dssp EEEEECCSSSCEEEEEEEEEEETTTT
T ss_pred EEEecCCCCCCeEEEEeeEEEeecCC
Confidence 999974 8999999999999973
No 5
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=100.00 E-value=2.4e-34 Score=190.26 Aligned_cols=94 Identities=24% Similarity=0.454 Sum_probs=87.9
Q ss_pred CCCCCCCCCceEEEcCCccccHHHHHHHHHcCCC--eeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ 78 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp~--~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q 78 (106)
|++||++ +|.++|||+.+.|+++|.++|++||. ++|+|.++||||+++ ++|+|+|+|.++.+++++|+|+|
T Consensus 33 L~~~Y~~-~S~ls~~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~------~gilI~V~G~~~~~~~~~~~F~q 105 (129)
T 1zo2_A 33 LGGLYGP-QSMLTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPN------NGSIVFVTGDVRIDDGQPLKFSQ 105 (129)
T ss_dssp GGGGEEE-EEEEEETTEEEESHHHHHHHHHHHCCSCEEEEEEEEEEEECTB------SSEEEEEEEEEEETTCCCEEEEE
T ss_pred HHHhhCC-CcEEEECCceeccHHHHHHHHHhCCCcceEEEEEEEEEEEeCC------CcEEEEEEEEEEECCCCcceEEE
Confidence 6789999 99999999999999999999999994 889999999999976 58999999999999999999999
Q ss_pred EEEEEEeC-CeEEEEceeEEeeec
Q psy5646 79 NFIISAEG-ARWKIISDVFRLQQT 101 (106)
Q Consensus 79 tFvL~~~~-~~y~I~nD~fR~~~~ 101 (106)
||+|+|++ ++|+|.||+|||+++
T Consensus 106 tF~L~p~~~~~y~I~nD~fR~~~~ 129 (129)
T 1zo2_A 106 VFNLMPSGNGGFMIFNDLFRLNLG 129 (129)
T ss_dssp EEEEEECSSSCEEEEEEEEEEC--
T ss_pred EEEEEEcCCCcEEEEeEEEEEecC
Confidence 99999998 899999999999873
No 6
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-33 Score=183.89 Aligned_cols=92 Identities=17% Similarity=0.395 Sum_probs=86.0
Q ss_pred CCCCCCCCCceEEE-cCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeee
Q psy5646 1 MGKLYKDEDAVLSW-NGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFN 77 (106)
Q Consensus 1 l~~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~ 77 (106)
|++||++ +|.++| +|+.+.|+++|.++|++|| +++|+|.++||||+++ ++|+|+|+|.++.+++++|+|+
T Consensus 25 L~~~Y~~-~s~~~~~~~~~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~------~gili~V~G~l~~~~~~~r~F~ 97 (120)
T 3ujm_A 25 LHRFYNH-NSSYIHGESKLVVGQREIHNRIQQLNFNDCHAKISQVDAQATLG------NGVVVQVTGELSNDGQPMRRFT 97 (120)
T ss_dssp GGGGEEE-EEEEEETTCCCEESHHHHHHHHHHHCCCSCEEEEEEEEEEEEGG------GEEEEEEEEEEESTTCCCEEEE
T ss_pred Hhhhecc-cceEEEcCCcEecCHHHHHHHHHcCCCcceEEEEecccceEcCC------CCEEEEEEEEEEeCCCCCceEE
Confidence 6899999 987766 5899999999999999999 8899999999999987 5899999999999999999999
Q ss_pred EEEEEEEeC-CeEEEEceeEEee
Q psy5646 78 QNFIISAEG-ARWKIISDVFRLQ 99 (106)
Q Consensus 78 qtFvL~~~~-~~y~I~nD~fR~~ 99 (106)
|+|+|+|++ ++|+|.||+|||+
T Consensus 98 QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 98 QTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEECSTTCEEEEEEEEEEC
T ss_pred EEEEEEEcCCCCEEEEEEEEecC
Confidence 999999986 8999999999995
No 7
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=100.00 E-value=1.6e-33 Score=188.63 Aligned_cols=94 Identities=20% Similarity=0.441 Sum_probs=85.0
Q ss_pred CCCCCCCCCceEEE-----cCC---ccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECC
Q psy5646 1 MGKLYKDEDAVLSW-----NGH---GTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKN 70 (106)
Q Consensus 1 l~~~Y~~~~s~l~~-----nG~---~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~ 70 (106)
|++||++ +|.++| ||+ .+.|+++|.++|++|| .++|+|.++||||+++ ++|+|+|+|.++.++
T Consensus 31 L~~~Y~~-~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qps~~------~gilI~V~G~l~~~~ 103 (140)
T 3q90_A 31 LHRFYGK-NSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLN------DGVVVQVMGLLSNNN 103 (140)
T ss_dssp GGGGEEE-EEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEECGG------GCEEEEEEEEEECTT
T ss_pred HHhhccc-CceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEEeCC------CCEEEEEEEEEecCC
Confidence 6899999 999999 675 6899999999999999 4899999999999987 589999999999999
Q ss_pred ceeeeeeEEEEEEEeC---CeEEEEceeEEeeec
Q psy5646 71 MKKTGFNQNFIISAEG---ARWKIISDVFRLQQT 101 (106)
Q Consensus 71 ~~~~~F~qtFvL~~~~---~~y~I~nD~fR~~~~ 101 (106)
+++|+|+|||+|+|++ ++|+|.||+|||+|+
T Consensus 104 ~~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de 137 (140)
T 3q90_A 104 QALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDE 137 (140)
T ss_dssp CCCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGG
T ss_pred CCccEEEEEEEEeecCCCCCCEEEEEEEeEeehh
Confidence 9999999999999986 899999999999985
No 8
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=99.97 E-value=1.5e-31 Score=181.29 Aligned_cols=97 Identities=20% Similarity=0.337 Sum_probs=89.2
Q ss_pred CCCCCCCCCceEEEc---------------CCccccHHHHHHHHHcC--C--CeeEEEeEEEEEeCCcccccCceeEEEE
Q psy5646 1 MGKLYKDEDAVLSWN---------------GHGTKGSQAIVKYISEL--P--PCDHELKSMDIHRLPEEAAQNQIAYLIS 61 (106)
Q Consensus 1 l~~~Y~~~~s~l~~n---------------G~~~~G~~~I~~~l~~l--p--~~~h~i~s~D~q~~~~~~~~~~~~ili~ 61 (106)
|++||++ +|.++|+ |+.+.|+++|.++|.+| | +++|+|.++||||++++ +++|+|+
T Consensus 33 L~~~Y~~-~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h~I~s~D~q~~~~~----~~~ilI~ 107 (154)
T 2qiy_A 33 LAYFYAS-TAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDTIDFQYTGHL----HKSILIM 107 (154)
T ss_dssp GGGGEEE-EEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEEEEEEEEEEEESGG----GCEEEEE
T ss_pred HHHhhCC-CcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEEEEEEEEEEEccCC----CCEEEEE
Confidence 6789999 9999999 88999999999999999 9 99999999999999752 2589999
Q ss_pred EEEEEEECCceeeeeeEEEEEEEeC--CeEEEEceeEEeeecC
Q psy5646 62 TSGTVVYKNMKKTGFNQNFIISAEG--ARWKIISDVFRLQQTP 102 (106)
Q Consensus 62 V~G~v~~~~~~~~~F~qtFvL~~~~--~~y~I~nD~fR~~~~~ 102 (106)
|+|.++.+++++|+|+|||+|+|++ ++|+|.||+|||++..
T Consensus 108 V~G~~~~~~~~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~ 150 (154)
T 2qiy_A 108 ATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFISNS 150 (154)
T ss_dssp EEEEEEETTCCCEEEEEEEEEEECC---CEEEEEEEEEEECC-
T ss_pred EEEEEEECCCCCceEEEEEEEEEeCCCCcEEEEEEEEEEEcce
Confidence 9999999999999999999999987 5999999999999864
No 9
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.91 E-value=8e-24 Score=150.70 Aligned_cols=97 Identities=21% Similarity=0.312 Sum_probs=84.9
Q ss_pred CCCCCCCCCceEEEcCC---------------------------------------ccccHHHHHHHHHcCCCeeEEE--
Q psy5646 1 MGKLYKDEDAVLSWNGH---------------------------------------GTKGSQAIVKYISELPPCDHEL-- 39 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~---------------------------------------~~~G~~~I~~~l~~lp~~~h~i-- 39 (106)
|..||++ +|.++|++. ...|+++|.++|.+||+++|++
T Consensus 32 L~~lY~~-~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l~~G~~~I~~~l~~LPkT~H~l~~ 110 (221)
T 1of5_A 32 LLNLYSP-QSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLSIGQESINSIFKTLPKTKHHLQE 110 (221)
T ss_dssp GGGGEEE-EEEEEEEECCC--------------------------------------CBHHHHHHHHHHHSCCEEECTTT
T ss_pred HHHhhCc-CcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhhccCHHHHHHHHHhCCCeeEeccc
Confidence 5689999 999999873 5679999999999999999999
Q ss_pred ----eEEEEEeCCcccccCceeEEEEEEEEEEECCc--------------------------------eeeeeeEEEEEE
Q psy5646 40 ----KSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM--------------------------------KKTGFNQNFIIS 83 (106)
Q Consensus 40 ----~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~--------------------------------~~~~F~qtFvL~ 83 (106)
.++||||.+.. ++|+|+|+|.++.++. .+|.|+|||+|+
T Consensus 111 ~~~s~~vD~~~~~~~-----~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rsF~RTFvL~ 185 (221)
T 1of5_A 111 QPNEYSMETISYPQI-----NGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNSTSNNKLSKKSFDRTWVIV 185 (221)
T ss_dssp SGGGCEEEEEEEGGG-----TEEEEEEEEEEEEC-----------------------------CCSCCEEEEEEEEEEEE
T ss_pred CCCceEEEeEEcCCC-----CeEEEEEEEEEEECCCcccccccccccccccccccccccccccccccCCccceEEEEEEE
Confidence 59999999763 4899999999997654 589999999999
Q ss_pred EeCCeEEEEceeEEeeecCC
Q psy5646 84 AEGARWKIISDVFRLQQTPV 103 (106)
Q Consensus 84 ~~~~~y~I~nD~fR~~~~~~ 103 (106)
|.+++|+|.||+||+..+..
T Consensus 186 P~~~~~~I~nD~l~ir~~s~ 205 (221)
T 1of5_A 186 PMNNSVIIASDLLTVRAYST 205 (221)
T ss_dssp EETTEEEEEEEEEEEEECCC
T ss_pred ecCCeEEEEeeEEEeecCCC
Confidence 99899999999999998764
No 10
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.90 E-value=1.9e-23 Score=151.16 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=85.1
Q ss_pred CCCCCCCCCceEEEcCC---------------------------------ccccHHHHHHHHHcCCCeeEEEe--EEEEE
Q psy5646 1 MGKLYKDEDAVLSWNGH---------------------------------GTKGSQAIVKYISELPPCDHELK--SMDIH 45 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~---------------------------------~~~G~~~I~~~l~~lp~~~h~i~--s~D~q 45 (106)
|.++|++ +|.++|+++ .+.|+++|.++|.+||+++|.+. .+|||
T Consensus 37 L~~lY~~-~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~~I~~~l~~LP~t~H~~~s~~vD~~ 115 (250)
T 1jkg_B 37 LLDAYHD-GACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDIS 115 (250)
T ss_dssp GGGTEEE-EEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHHHHHHHTTSCCEEECGGGCEEEEE
T ss_pred HHHhhCc-CcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHHHHHHHHHhCCCeeEeccceEEeee
Confidence 5689999 999999843 57899999999999999999999 78999
Q ss_pred eCCcccccCceeEEEEEEEEEEECC----ceeeeeeEEEEEEEe-CCeEEEEceeEEeeecC
Q psy5646 46 RLPEEAAQNQIAYLISTSGTVVYKN----MKKTGFNQNFIISAE-GARWKIISDVFRLQQTP 102 (106)
Q Consensus 46 ~~~~~~~~~~~~ili~V~G~v~~~~----~~~~~F~qtFvL~~~-~~~y~I~nD~fR~~~~~ 102 (106)
+..+ ++++|+|+|.++.++ .++|.|+|||+|+|. +++|+|.||+||+..+.
T Consensus 116 ~~~~------~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~~s 171 (250)
T 1jkg_B 116 AQTS------TLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS 171 (250)
T ss_dssp EECS------SCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEECC
T ss_pred ecCC------CEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEECCC
Confidence 9765 489999999999876 579999999999996 47899999999999865
No 11
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.89 E-value=3.3e-23 Score=147.36 Aligned_cols=98 Identities=19% Similarity=0.354 Sum_probs=83.8
Q ss_pred CCCCCCCCCceEEEcCC------------------------------------------ccccHHHHHHHHHcCCCeeEE
Q psy5646 1 MGKLYKDEDAVLSWNGH------------------------------------------GTKGSQAIVKYISELPPCDHE 38 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG~------------------------------------------~~~G~~~I~~~l~~lp~~~h~ 38 (106)
|..||++ +|.++|.+. ...|+++|.++|.+||+++|+
T Consensus 35 L~~lY~~-~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l~~G~~~I~~~l~~LPkT~H~ 113 (219)
T 1q40_B 35 LMILYQN-ESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMAKLSIGQEQIYKSFQQLPKTRHD 113 (219)
T ss_dssp GGGGCCT-TCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHHHTCEEHHHHHHHHHHTSCEEECC
T ss_pred HHHhhcc-ccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhhhhhhccCHHHHHHHHHHCCCeeEe
Confidence 5689999 999999863 467999999999999999999
Q ss_pred E------eEEEEEeCCcccccCceeEEEEEEEEEEECCc-------------------------------eeeeeeEEEE
Q psy5646 39 L------KSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM-------------------------------KKTGFNQNFI 81 (106)
Q Consensus 39 i------~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~-------------------------------~~~~F~qtFv 81 (106)
+ -++|||+.+.. ++|+|+|+|.++.++. .+|.|+|||+
T Consensus 114 l~~~~~s~~vD~~~~p~~-----~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rsF~RtFv 188 (219)
T 1q40_B 114 IIATPELFSMEVYKFPTL-----NGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGPKHKRIPLSKKSFDRTFV 188 (219)
T ss_dssp TTTCGGGCEEEEEECSST-----TCEEEEEEEEEEEEECCSSCCCC----------CCSSSSSCCCCCCCCCEEEEEEEE
T ss_pred cccCCCceEEEeEecCCC-----CeEEEEEEEEEEECCCccccccccccccccccccccccccccccccCCccceEEEEE
Confidence 9 59999988642 4899999999996542 5899999999
Q ss_pred EEEe-CCeEEEEceeEEeeecCCC
Q psy5646 82 ISAE-GARWKIISDVFRLQQTPVN 104 (106)
Q Consensus 82 L~~~-~~~y~I~nD~fR~~~~~~~ 104 (106)
|+|. +++|+|+||+||+..+...
T Consensus 189 L~P~~~~~~~I~nD~l~ir~~~~~ 212 (219)
T 1q40_B 189 VIPGPNGSMIVASDTLLIRPYTSD 212 (219)
T ss_dssp EECC---CCEEEEEEEEEEECCSC
T ss_pred EEECCCCcEEEEeeEEEEecCCCc
Confidence 9998 5899999999999987653
No 12
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.83 E-value=5.8e-21 Score=132.20 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=68.6
Q ss_pred CCC----CCCCceEEEcCCcc------ccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCce
Q psy5646 3 KLY----KDEDAVLSWNGHGT------KGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMK 72 (106)
Q Consensus 3 ~~Y----~~~~s~l~~nG~~~------~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~ 72 (106)
++| .+ +|.++|||+++ .|+++|.++|.+||.++|.++++||||+++. ++++|+++|+|++|+++
T Consensus 60 ~ly~~~l~~-~a~liwNGnp~~~~~~~~gr~~fqk~w~~lP~SqHqL~SlDahpIpGq-----~T~lI~asGkVrFDesg 133 (201)
T 1q42_A 60 TQLGSNLKR-SSAIIVNGQPIIPSPQEDCKLQFQKKWLQTPLSSHQLTSYDGHLIPGT-----GTFVVHFSAKVRFDQSG 133 (201)
T ss_dssp TTTTTTEEE-EEEEEETTEECCCCSSCCHHHHHHHHHHTSCCEEEEEEEEEEEEETTT-----TEEEEEEEEEEEEBCSS
T ss_pred HHhccccCC-ccEEEEcCcccccccccccHHHHHHHHHhCCCcceeeeeeecceeCCC-----cEEEEEEeEEEEECCCC
Confidence 677 77 99999999999 9999999999999999999999999999964 68999999999999999
Q ss_pred eeeeeEEEEEEEe
Q psy5646 73 KTGFNQNFIISAE 85 (106)
Q Consensus 73 ~~~F~qtFvL~~~ 85 (106)
+++|.|+|+|.++
T Consensus 134 r~~fgQsf~Lta~ 146 (201)
T 1q42_A 134 RNRLGESADLFQE 146 (201)
T ss_dssp CCTTSCCC-----
T ss_pred cCcCCCcEEEecc
Confidence 9999999999976
No 13
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.78 E-value=6.6e-19 Score=124.15 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=69.3
Q ss_pred ccHHHHHHHHHcCCCeeEEEeE--EEEEeCCcccccCceeEEEEEEEEEEEC---------CceeeeeeEEEEEEEeC-C
Q psy5646 20 KGSQAIVKYISELPPCDHELKS--MDIHRLPEEAAQNQIAYLISTSGTVVYK---------NMKKTGFNQNFIISAEG-A 87 (106)
Q Consensus 20 ~G~~~I~~~l~~lp~~~h~i~s--~D~q~~~~~~~~~~~~ili~V~G~v~~~---------~~~~~~F~qtFvL~~~~-~ 87 (106)
+|+++|.++|.+||+++|++.+ +||||.++ ++++|+|+|.++.+ +.++|.|+|||+|+|.+ +
T Consensus 98 ~G~~~I~~~L~~LP~T~H~~~s~~vD~~p~~~------~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~~~g 171 (205)
T 3nv0_A 98 HGAMDIVVALSRLPATIHLMDTFVVDVFLVSA------TLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEG 171 (205)
T ss_dssp EHHHHHHHHHHHSCCEEECGGGCEEEEEEECS------SCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEECSTT
T ss_pred hCHHHHHHHHHhCCCeEEecCceEEEEEEeCC------CeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEECCCC
Confidence 6999999999999999999996 79999986 47999999999986 34689999999999986 8
Q ss_pred eEEEEceeEEeeecC
Q psy5646 88 RWKIISDVFRLQQTP 102 (106)
Q Consensus 88 ~y~I~nD~fR~~~~~ 102 (106)
+|+|.||++-+..+.
T Consensus 172 ~~~I~ND~L~Ir~~s 186 (205)
T 3nv0_A 172 KVAIVSDQLFISSMS 186 (205)
T ss_dssp CEEEEEEEEEEECCC
T ss_pred cEEEEecEEEeeCCC
Confidence 999999999887654
No 14
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.66 E-value=2e-16 Score=108.39 Aligned_cols=78 Identities=10% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCCCCCCCceEEEcCCccccHHHHHHHHH-cCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEE
Q psy5646 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYIS-ELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNF 80 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~-~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtF 80 (106)
..|+.+ .+.|++||+++.++.+.++.|. ++|.++|+++++|||.++.+ ++|+|+|+|+|++++..+-+|.|+|
T Consensus 43 ssF~p~-~~~Ii~NG~p~a~p~~fqeiw~~Q~p~T~hel~S~D~HVIngs-----gsivv~VsgkVRFdEsgrd~fgEtf 116 (184)
T 1of5_B 43 QLFNPN-NCRIIFNATPFAQATVFLQMWQNQVVQTQHALTGVDYHAIPGS-----GTLICNVNCKVRFDESGRDKMGQDA 116 (184)
T ss_dssp TTBCSS--CCEEETTEEESCHHHHHHHHHHHSCCCEEEEEEEEEEEETTT-----TEEEEEEEEEEECC-----------
T ss_pred hhcCCC-CceEEECCeEcCCHHHHHHHHHhcCCCceEEEEeEEEEEECCC-----CeEEEEEEEEEEECCCCCCCCCCeE
Confidence 456655 7899999999999999999998 99999999999999999974 6999999999999877656999999
Q ss_pred EEEEe
Q psy5646 81 IISAE 85 (106)
Q Consensus 81 vL~~~ 85 (106)
+|.|+
T Consensus 117 vLvpn 121 (184)
T 1of5_B 117 TVPIQ 121 (184)
T ss_dssp -----
T ss_pred EECCC
Confidence 99987
No 15
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=97.93 E-value=7.7e-05 Score=48.51 Aligned_cols=88 Identities=13% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCCCCCCCceEEEcCCccccHHHHHHHHHcC-----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCce----
Q psy5646 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISEL-----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMK---- 72 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~l-----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~---- 72 (106)
..+|.+ ++.+...|....|+++|.+.+... +...+.+...+.....+ ...++...|.+..++.+
T Consensus 41 ~~lf~~-Da~~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------d~A~v~~~~~~~~~g~~~~~~ 113 (143)
T 4i4k_A 41 ADVFAE-DGTMILPGLFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGD------GIALLITEGGILAPGETEASG 113 (143)
T ss_dssp HTTEEE-EEEEEETTEEEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEET------TEEEEEEEEEEECTTCSSCCG
T ss_pred HHHhhc-CceEEeCCCeecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCC------CEEEEEeccceecCCCCCCCc
Confidence 468888 888888898899999999988653 34556665556554433 13444455656655542
Q ss_pred eeeeeEEEEEEEeCCeEEEEceeE
Q psy5646 73 KTGFNQNFIISAEGARWKIISDVF 96 (106)
Q Consensus 73 ~~~F~qtFvL~~~~~~y~I~nD~f 96 (106)
.+.+..|+++...+++|+|....-
T Consensus 114 ~~~~~~T~v~~r~~g~WrI~~~h~ 137 (143)
T 4i4k_A 114 DGAVRASWLAVEQDGQWRLAAYQN 137 (143)
T ss_dssp GGEEEEEEEEEEETTEEEEEEEEE
T ss_pred ccceEEEEEEEEECCcEEEEEecC
Confidence 366788999999999999988653
No 16
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=97.50 E-value=0.00048 Score=45.62 Aligned_cols=91 Identities=11% Similarity=0.092 Sum_probs=60.7
Q ss_pred CCCCCCCCceEEE-cCCccccHHHHHHHHHcC-----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc----
Q psy5646 2 GKLYKDEDAVLSW-NGHGTKGSQAIVKYISEL-----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM---- 71 (106)
Q Consensus 2 ~~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~l-----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~---- 71 (106)
..+|.+ ++.+.. .|..+.|+++|.+.+... +..++.+...+.....+ ...++...+.+...+.
T Consensus 38 ~~lfa~-Da~~~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------d~A~v~~~~~~~~~g~~~~~ 110 (172)
T 3cu3_A 38 AAPFSE-TADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNS------QLALMLVVIRVILPGQTETS 110 (172)
T ss_dssp HTTEEE-EEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEET------TEEEEEEEEEEECTTCSSBC
T ss_pred HhhcCC-CeEEEeCCCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCC------CEEEEEEEEEEEeCCCCCcC
Confidence 467888 888774 788999999999988664 23445444444443322 1344455555766654
Q ss_pred eeeeeeEEEEEEEeCCeEEEEceeEEee
Q psy5646 72 KKTGFNQNFIISAEGARWKIISDVFRLQ 99 (106)
Q Consensus 72 ~~~~F~qtFvL~~~~~~y~I~nD~fR~~ 99 (106)
+......++++...+++|+|.......+
T Consensus 111 ~~~~~~~t~v~~r~dG~WrI~~~~~s~~ 138 (172)
T 3cu3_A 111 ASRDSLPLYVVTKGDEGWQIEGLLNTRK 138 (172)
T ss_dssp GGGCBCCEEEEEEETTEEEEEEEECCBC
T ss_pred CccceEEEEEEEEeCCeEEEEEEEcCcc
Confidence 2355667888888899999998766543
No 17
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=97.47 E-value=0.00098 Score=43.51 Aligned_cols=94 Identities=12% Similarity=0.168 Sum_probs=61.3
Q ss_pred CCCCCCCCCceEE-EcCCccccHHHHHHHHHcC----C-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEE----EECC
Q psy5646 1 MGKLYKDEDAVLS-WNGHGTKGSQAIVKYISEL----P-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTV----VYKN 70 (106)
Q Consensus 1 l~~~Y~~~~s~l~-~nG~~~~G~~~I~~~l~~l----p-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v----~~~~ 70 (106)
|..+|.+ ++.++ ..|....|+++|.+.+... . .+.+.+...+...+.+. ..++.+...+ .-+|
T Consensus 27 ~~~lf~~-Da~~~~~~G~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D------~A~v~~~~~l~g~~~~~G 99 (146)
T 3gzr_A 27 FAEIFWP-DGSWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPG------SALAVVTLIQDAYVTPDG 99 (146)
T ss_dssp SGGGEEE-EEEEECTTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETT------EEEEEEEEEECCEECTTC
T ss_pred HHhhccC-CeEEEcCCCCeeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCC------EEEEEEEEEecceeCCCC
Confidence 4568888 88876 6788899999999887543 2 34555544454444331 3333333222 1234
Q ss_pred cee--eeeeEEEEEEEeCCeEEEEceeEEeeec
Q psy5646 71 MKK--TGFNQNFIISAEGARWKIISDVFRLQQT 101 (106)
Q Consensus 71 ~~~--~~F~qtFvL~~~~~~y~I~nD~fR~~~~ 101 (106)
.+. .....|++++..+++|.|....-..++.
T Consensus 100 ~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~p 132 (146)
T 3gzr_A 100 RQMPRAHDRLTLLAVEREGVWRFIHGHNTIVNP 132 (146)
T ss_dssp CEECCEEEEEEEEEEEETTEEEEEEEEEEECCT
T ss_pred CcCCccCcEEEEEEEEECCEEEEEEEecccCcC
Confidence 432 4678899999999999999998877653
No 18
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=97.12 E-value=0.0076 Score=36.98 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=54.8
Q ss_pred CCCCCCCCceEEEcC-CccccHHHHHHHHHcCC---CeeEEEeEEEEEeCCcccccCceeEEEE--EEEEEE-ECCcee-
Q psy5646 2 GKLYKDEDAVLSWNG-HGTKGSQAIVKYISELP---PCDHELKSMDIHRLPEEAAQNQIAYLIS--TSGTVV-YKNMKK- 73 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG-~~~~G~~~I~~~l~~lp---~~~h~i~s~D~q~~~~~~~~~~~~ili~--V~G~v~-~~~~~~- 73 (106)
..+|.+ ++.+.-.| ..+.|+++|.+++..+. ...|.+.........+ ..++. ..+... -+|.+.
T Consensus 28 ~~l~a~-Da~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~gd-------~A~~~~~~~~~~~~~~G~~~~ 99 (129)
T 3hx8_A 28 ASKYMD-DAAAFPPDMARVDGRQNIQKLWQGAMDMGISELKLTTLDVQESGD-------FAFESGSFSLKAPGKDSKLVD 99 (129)
T ss_dssp HTTEEE-EEEEECTTSCCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEETT-------EEEEEEEEEEEEECTTSCEEE
T ss_pred HHhhCC-CeEEeCCCCCcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcCCC-------EEEEEEEEEEEeeCCCCCeee
Confidence 468888 88885443 46899999999887653 3677777666664333 22222 222222 134432
Q ss_pred eeeeEEEEEEEe-CCeEEEEceeEE
Q psy5646 74 TGFNQNFIISAE-GARWKIISDVFR 97 (106)
Q Consensus 74 ~~F~qtFvL~~~-~~~y~I~nD~fR 97 (106)
..-.-+.++... +++|.|..|.+-
T Consensus 100 ~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 100 AAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred eeEEEEEEEEECCCCcEEEEEeecc
Confidence 233456667777 799999999874
No 19
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=96.78 E-value=0.024 Score=35.02 Aligned_cols=91 Identities=14% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCCCCCCCceEEEcCC-ccccHHHHHHHHHcCC-Ce--eEEEeEEEEEeCCcccccCceeEEEE--EEEEEEE--CCce-
Q psy5646 2 GKLYKDEDAVLSWNGH-GTKGSQAIVKYISELP-PC--DHELKSMDIHRLPEEAAQNQIAYLIS--TSGTVVY--KNMK- 72 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~-~~~G~~~I~~~l~~lp-~~--~h~i~s~D~q~~~~~~~~~~~~ili~--V~G~v~~--~~~~- 72 (106)
..+|.+ ++.+...|. +..|+++|.+.+..+. .. ...+...+.....+ ...++. ..|.... ++.+
T Consensus 33 ~~l~a~-D~v~~~~~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~~~~g------d~a~~~~~~~~~~~~~~~g~~~ 105 (135)
T 3d9r_A 33 IATYTD-DGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQTSA------DWAFVRSATEGTETNKATGVVT 105 (135)
T ss_dssp HHTEEE-EEEEECTTSCCEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEET------TEEEEEEEEEEEEEETTTCCEE
T ss_pred HHhcCC-CEEEECCCCCcccCHHHHHHHHHHHHhhcCCceeEEEEEEEEecC------CEEEEEEEEEEEEecCCCCCce
Confidence 357888 887765554 5579999999987754 11 22222222222111 122222 2343333 2332
Q ss_pred eeeeeEEEEEEEe-CCeEEEEceeEEee
Q psy5646 73 KTGFNQNFIISAE-GARWKIISDVFRLQ 99 (106)
Q Consensus 73 ~~~F~qtFvL~~~-~~~y~I~nD~fR~~ 99 (106)
......++++... +++|+|..+.|...
T Consensus 106 ~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 106 PAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred eecccEEEEEEecCCCcEEEEEEeeccc
Confidence 2235567888887 89999999999765
No 20
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=96.64 E-value=0.055 Score=34.86 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=52.2
Q ss_pred CCCCCCCCceEEE--cCCccccHHHHHHHHHcCCC-e-eEEEeEEEEEeCCcccccCceeEEEEEEEEEE--E---CCce
Q psy5646 2 GKLYKDEDAVLSW--NGHGTKGSQAIVKYISELPP-C-DHELKSMDIHRLPEEAAQNQIAYLISTSGTVV--Y---KNMK 72 (106)
Q Consensus 2 ~~~Y~~~~s~l~~--nG~~~~G~~~I~~~l~~lp~-~-~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~--~---~~~~ 72 (106)
..+|.+ ++.+.. .|....|+++|.+.+..+.. . ...+..-+.+...+ ...++ .|... . +|.+
T Consensus 42 ~~l~a~-Dav~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~~~g------d~A~~--~~~~~~~~~~~~G~~ 112 (156)
T 3h51_A 42 ADLYAP-DGVLLPTVSNEVRASREQIENYFEMFLTKKPKGVINYRTVRLLDD------DSAVD--AGVYTFTLTDKNGKK 112 (156)
T ss_dssp HTTEEE-EEEEECSSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEECSS------SEEEE--EEEEEEEEECTTSCE
T ss_pred HhhcCC-CEEEecCCCCccccCHHHHHHHHHHHHhhCCCCcccceEEEEecC------CeEEE--EEEEEEEEEcCCCCe
Confidence 468888 876642 34568999999988876531 1 12222223333212 12222 33332 2 2432
Q ss_pred -eeeeeEEEEEEEeCCeEEEEceeEEeee
Q psy5646 73 -KTGFNQNFIISAEGARWKIISDVFRLQQ 100 (106)
Q Consensus 73 -~~~F~qtFvL~~~~~~y~I~nD~fR~~~ 100 (106)
...--.|+++...+++|+|..+......
T Consensus 113 ~~~~~r~t~v~~r~dG~WkIv~~H~S~~p 141 (156)
T 3h51_A 113 SDVQARYTFVYEKRDGKWLIINHHSSAMP 141 (156)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred EEEEeEEEEEEEEECCEEEEEEEeecCCC
Confidence 2344677888888999999999887654
No 21
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=96.43 E-value=0.027 Score=36.39 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=51.6
Q ss_pred CCCCCCCCceEEEcCCccccHHHHHHHHHcCC---CeeEEEeEEEEEeCCcccccCceeEE-EEEEEEEEEC-C-c-eee
Q psy5646 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELP---PCDHELKSMDIHRLPEEAAQNQIAYL-ISTSGTVVYK-N-M-KKT 74 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp---~~~h~i~s~D~q~~~~~~~~~~~~il-i~V~G~v~~~-~-~-~~~ 74 (106)
..+|.+ ++.+...|.+..|+++|.+.+...- ........-+++...+ .++. -......... + . ..+
T Consensus 39 ~al~a~-D~v~~~~g~~~~Gr~ai~a~~~~~~~~~~~~~~~~~~~i~v~GD------~A~~~~~~~~~~t~~~~g~~~~~ 111 (139)
T 3rob_A 39 SSLMTD-DVVFLTPGRLPFGKEEFLAACEQNDQRVIIEASATFEEIVIVEP------MAYTRTHLHIKVTPRSGGAVREL 111 (139)
T ss_dssp HHTEEE-EEEEECTTSCCBCHHHHHHHHHHHHHHEEEEEEEEEEEEEEETT------EEEEEEEEEEEEEETTSCCCEEE
T ss_pred HHHccC-cEEEECCCCCccCHHHHHHHHHHHHHhcCCCCceEEEEEEEcCC------eEEEEEEEEEEEecCCCCceeEe
Confidence 468999 9888888888889999998875432 1223333334444333 1222 1112223322 2 2 233
Q ss_pred eeeEEEEEEE-eCCeEEEEceeE
Q psy5646 75 GFNQNFIISA-EGARWKIISDVF 96 (106)
Q Consensus 75 ~F~qtFvL~~-~~~~y~I~nD~f 96 (106)
....++++.+ .+++|+|.-|.-
T Consensus 112 ~g~~~~v~rK~~dG~W~i~~d~~ 134 (139)
T 3rob_A 112 AGHAMSIFRRSMFGEWQLARDAN 134 (139)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEE
T ss_pred eccEEEEEEECCCCcEEEEEEhh
Confidence 4447788888 569999998863
No 22
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=96.38 E-value=0.049 Score=35.21 Aligned_cols=90 Identities=8% Similarity=0.094 Sum_probs=56.8
Q ss_pred CCCCCCCCceEE--E-cCCccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECC--ce
Q psy5646 2 GKLYKDEDAVLS--W-NGHGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKN--MK 72 (106)
Q Consensus 2 ~~~Y~~~~s~l~--~-nG~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~--~~ 72 (106)
..+|.+ +..++ . .|..+.|+++|.+.|..+ +..++++..+.+....+ ..++.+...+...+ .+
T Consensus 30 ~al~a~-d~~v~~v~p~g~~l~G~~ai~~~w~~~f~~~~~~~i~~~~v~v~~~gd-------~A~v~~~e~~~~~~~~g~ 101 (144)
T 3gwr_A 30 MAVWAR-DDHVACIHPLAAPLNGRAAVAAGWRSMFGAAGRFRLQVKAVHEIRQAD-------HVIRIVDEFLTIGDETAP 101 (144)
T ss_dssp HHHBCS-SSCCEEECTTCCCEESHHHHHHHHHHHHHHHCCEEEEEEEEEEEECSS-------EEEEEEEEEEEETTCSSC
T ss_pred HhhccC-CCCEEEECCCCCCcccHHHHHHHHHHHHcCCCcEEEEEEEEEEEecCC-------EEEEEEEEEEEecCCCCc
Confidence 357888 64333 3 346889999999888653 24444444444443332 45666666676532 22
Q ss_pred eeeeeEEEEEEEeCCeEEEEceeEEee
Q psy5646 73 KTGFNQNFIISAEGARWKIISDVFRLQ 99 (106)
Q Consensus 73 ~~~F~qtFvL~~~~~~y~I~nD~fR~~ 99 (106)
...+--|.++...+++|+|....--..
T Consensus 102 ~~~~r~T~V~~r~~g~WrivhhH~S~~ 128 (144)
T 3gwr_A 102 RPAILATNVYRREADGWRMVLHHASPL 128 (144)
T ss_dssp CCCEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred eeeEEEEEEEEEECCEEEEEEEecCCC
Confidence 255677888888889999998876544
No 23
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=96.35 E-value=0.014 Score=37.03 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=50.2
Q ss_pred CCCCCCCCceEEE-cCCccccHHHHHHHHHcCCC-----eeEEEeEEEEEeCCcccccCceeEEEEEEEEEE--ECCce-
Q psy5646 2 GKLYKDEDAVLSW-NGHGTKGSQAIVKYISELPP-----CDHELKSMDIHRLPEEAAQNQIAYLISTSGTVV--YKNMK- 72 (106)
Q Consensus 2 ~~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~lp~-----~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~--~~~~~- 72 (106)
..+|.+ ++.+.. .|.+..|+++|.+.+..+.. ....+.........+ ..++.....+. .+|.+
T Consensus 25 ~~lfa~-Dav~~~~~g~~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~gd-------~A~~~~~~~~~~~~~G~~~ 96 (142)
T 2gxf_A 25 MNYYSE-DAVLVVKPGMIARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAGD-------TVLVLSQTLLDSDKKDSEY 96 (142)
T ss_dssp TTSEEE-EEEEECSSSCEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEETT-------EEEEEEEEECCC-------
T ss_pred HHhcCC-CEEEEcCCCCcccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEcCC-------EEEEEEEEEEEECCCCCeE
Confidence 578988 888854 57789999999999986542 334444444444333 23332222222 22332
Q ss_pred eeeeeEEEEEEEe-CCeEEEEceeE
Q psy5646 73 KTGFNQNFIISAE-GARWKIISDVF 96 (106)
Q Consensus 73 ~~~F~qtFvL~~~-~~~y~I~nD~f 96 (106)
.....-+++++.+ +++|+|.-|..
T Consensus 97 ~~~g~~t~v~~r~~dG~Wri~~d~~ 121 (142)
T 2gxf_A 97 AMERRATYVFKKNAQGEWLCVIDNS 121 (142)
T ss_dssp --EEEEEEEEEECTTSCEEEEEEET
T ss_pred eeeEEEEEEEEECCCCCEEEEEECC
Confidence 1222347788874 68899988753
No 24
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=96.28 E-value=0.073 Score=33.51 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=56.6
Q ss_pred CCCCCCCceEEE---cCCccccHHHHHHHHHcC----C-CeeEEEeEEEEEeCCcccccCceeEEEE---EEEEEEEC--
Q psy5646 3 KLYKDEDAVLSW---NGHGTKGSQAIVKYISEL----P-PCDHELKSMDIHRLPEEAAQNQIAYLIS---TSGTVVYK-- 69 (106)
Q Consensus 3 ~~Y~~~~s~l~~---nG~~~~G~~~I~~~l~~l----p-~~~h~i~s~D~q~~~~~~~~~~~~ili~---V~G~v~~~-- 69 (106)
++|.+ +..+.- .|..+.|.++|.+.+... + ..+.++.....+...+. .+++. +.+ ..+
T Consensus 36 ~l~a~-d~~~~~~~~~g~~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~gd~------aav~~~~~~~~--~~~~~ 106 (143)
T 2ux0_A 36 KICDP-GLTSFEPEALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGED------AACIAYIRLTQ--YIDGQ 106 (143)
T ss_dssp HHEEE-EEEEECGGGTTCEEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTT------EEEEEEEEEEE--EECTT
T ss_pred HhcCC-CcEEEeccCCCcEEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEecCc------EEEEEEeEeee--eecCC
Confidence 45767 655542 367889999999988775 2 34556666666666542 33222 233 223
Q ss_pred Cce-eeeeeEEEEEEEeCCeEEEEceeEEeee
Q psy5646 70 NMK-KTGFNQNFIISAEGARWKIISDVFRLQQ 100 (106)
Q Consensus 70 ~~~-~~~F~qtFvL~~~~~~y~I~nD~fR~~~ 100 (106)
|.+ ....-.|+++...+++|+|..+..-...
T Consensus 107 g~~~~~~~r~T~v~~k~~g~Wkivh~H~S~~~ 138 (143)
T 2ux0_A 107 GRPRTSQSEETRVWHRRDGKWLNVHYHCSGAP 138 (143)
T ss_dssp SCEEEEEEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred CCeeeeeEEEEEEEEEECCEEEEEEEeeCCCC
Confidence 332 3456688888999999999998776543
No 25
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=96.15 E-value=0.036 Score=35.44 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=51.3
Q ss_pred CCCCCCCceEEEcCCccccHHHHHH-HHHc----CCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEE--CCce-ee
Q psy5646 3 KLYKDEDAVLSWNGHGTKGSQAIVK-YISE----LPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVY--KNMK-KT 74 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG~~~~G~~~I~~-~l~~----lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~--~~~~-~~ 74 (106)
.+|.+ ++.+...+....|+++|.+ .+.. ++...+++.....+...+ ..++.....+.. +|.+ ..
T Consensus 53 ~l~a~-Da~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~gd-------~A~~~~~~~~~~~~~G~~~~~ 124 (148)
T 3bb9_A 53 QSLAA-NVQIYEGGKVERSLTEYANHHMLADMAYLKGLTITPKEHQITITGD-------IAISTSISHAQGEYKGKSIDS 124 (148)
T ss_dssp HHEEE-EEEEEETTEEECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEETT-------EEEEEEEEEEEECCC--CEEE
T ss_pred HhhCC-CeEEEeCCCccCCHHHHHHHhHHHHHHhccCceEEeeeEEEEEcCC-------EEEEEEEEEEeeeeCCccccc
Confidence 46778 8776655556889999988 5543 235566666555554433 233333333332 2332 33
Q ss_pred eeeEEEEE-EEeCCeEEEEcee
Q psy5646 75 GFNQNFII-SAEGARWKIISDV 95 (106)
Q Consensus 75 ~F~qtFvL-~~~~~~y~I~nD~ 95 (106)
.+--|+++ ...+++|+|....
T Consensus 125 ~~r~T~v~~~k~~g~WkIvh~H 146 (148)
T 3bb9_A 125 MTMETLVLIKQADGRWKITHVH 146 (148)
T ss_dssp EEEEEEEEEECTTSCEEEEEEE
T ss_pred ceEEEEEEeEEcCCcEEEEEEE
Confidence 56678888 8888999998764
No 26
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=95.73 E-value=0.17 Score=31.14 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=50.8
Q ss_pred CCC--CCCCceEEEcCCccccHHHHHHHHHc-CC----CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc--ee
Q psy5646 3 KLY--KDEDAVLSWNGHGTKGSQAIVKYISE-LP----PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM--KK 73 (106)
Q Consensus 3 ~~Y--~~~~s~l~~nG~~~~G~~~I~~~l~~-lp----~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~--~~ 73 (106)
.+| .+ +..++.-|....|.++|.+.+.. ++ ....++.-.+.+.+.+ .+ ..|.|...+.+. .+
T Consensus 28 ~~y~~~~-d~~~~~~~~~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~~~-------~~-a~v~~~~~~~~~~~~~ 98 (122)
T 3b7c_A 28 QGYWQNE-QLMLISNGKFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSN-------YA-AMVVGRWDLKRLKDTP 98 (122)
T ss_dssp TTBCCST-TCEEECSSCEEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEET-------TE-EEEEEEEEEECSSCCC
T ss_pred HhhcCCC-CEEEECCCccccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEcCC-------CE-EEEEEEEEEEccCCCC
Confidence 567 55 66555445578999999987654 44 2445555566665422 12 223444444322 22
Q ss_pred eeeeEEEEEEEeCCeEEEEceeE
Q psy5646 74 TGFNQNFIISAEGARWKIISDVF 96 (106)
Q Consensus 74 ~~F~qtFvL~~~~~~y~I~nD~f 96 (106)
. -.-|+++...+++|+|..+..
T Consensus 99 ~-~r~T~v~~k~~g~W~Iv~~H~ 120 (122)
T 3b7c_A 99 T-GVFTLLVEKIDDRWVITMDHS 120 (122)
T ss_dssp E-EEEEEEEEEETTEEEEEEEEE
T ss_pred C-cEEEEEEEEeCCCEEEEEEec
Confidence 2 246888899999999998753
No 27
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=95.49 E-value=0.14 Score=32.24 Aligned_cols=83 Identities=14% Similarity=0.282 Sum_probs=52.8
Q ss_pred CCCCCCCCceEE--EcCC-ccc-cHHHHHHHHHc---CCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceee
Q psy5646 2 GKLYKDEDAVLS--WNGH-GTK-GSQAIVKYISE---LPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKT 74 (106)
Q Consensus 2 ~~~Y~~~~s~l~--~nG~-~~~-G~~~I~~~l~~---lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~ 74 (106)
.+.|++ ++.+. .+|. ... ..++..+.+.+ .|..+|+|.++|... + ...+.| ....-+..
T Consensus 34 ~~~f~p-da~~~~~~~G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~g--d-------~A~a~v----~~~~~~~~ 99 (125)
T 3duk_A 34 SAAFHK-DATIFGYVGDKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIVG--T-------VAHARV----EAENWTNF 99 (125)
T ss_dssp GGGEEE-EEEEEEEETTEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEET--T-------EEEEEE----EEECSSSC
T ss_pred HHhCCC-CcEEEEEcCCCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEEC--C-------EEEEEE----EEEEcCCC
Confidence 456777 88775 3555 222 34555555542 347788898888763 2 122222 11111236
Q ss_pred eeeEEEEEEEeCCeEEEEceeEEe
Q psy5646 75 GFNQNFIISAEGARWKIISDVFRL 98 (106)
Q Consensus 75 ~F~qtFvL~~~~~~y~I~nD~fR~ 98 (106)
.|...|.|...+++|.|.|-+|+.
T Consensus 100 ~f~D~l~L~k~dg~WkIv~K~~~~ 123 (125)
T 3duk_A 100 KFSDLFLLLKLDGKWTIVNKVFHL 123 (125)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEEEEEEEEeCCEEEEEEEEEEe
Confidence 899999999999999999999975
No 28
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=95.33 E-value=0.31 Score=31.49 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=56.1
Q ss_pred CCCCCCCCceEEEcCCccccHHHHHHHHHcC---CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEE-CCcee-eee
Q psy5646 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISEL---PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVY-KNMKK-TGF 76 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~l---p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~-~~~~~-~~F 76 (106)
..+|.+ ++.+...|....|+++|.+.+... +.+.|.+.........+.+ .+...+...... +|... ..-
T Consensus 36 ~~lf~~-Da~~~~~g~~~~G~~~i~~~~~~~~~~~~~~h~~~~~~i~~~gd~A-----~~~~~~~~~~~~~~g~~~~~~g 109 (170)
T 2chc_A 36 AGCFTE-DGAFEFDGWVIRGRPALREYADAHARVVRGRHLTTDLLYEVDGDVA-----TGRSASVVTLATAAGYKILGSG 109 (170)
T ss_dssp HTTEEE-EEEEEETTEEEESHHHHHHHHHHHHHHCCCCEEEEEEEEEEETTEE-----EEEEEEEEEEEETTEEEEEEEE
T ss_pred HhcccC-cEEEEeCCCCcCCHHHHHHHHHHhhcccceEEecCCeEEEEeCCEE-----EEEEEEEEEEEcCCCCEEEEEE
Confidence 367888 898888887889999999888664 4678887766655433211 111111111111 22211 122
Q ss_pred eEEEEEEEeCCeEEEEceeEEee
Q psy5646 77 NQNFIISAEGARWKIISDVFRLQ 99 (106)
Q Consensus 77 ~qtFvL~~~~~~y~I~nD~fR~~ 99 (106)
.-+..+...+++|+|..-.+.+.
T Consensus 110 ~y~d~~~r~dg~Wri~~r~~~~~ 132 (170)
T 2chc_A 110 EYQDRLIKQDGQWRIAYRRLRND 132 (170)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEEEECCEEEEEEEEEEEe
Confidence 34556667789999999888765
No 29
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=95.16 E-value=0.33 Score=30.69 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=56.0
Q ss_pred CCCCCCCCceEEEcCCcc-ccHHHHHHHHHcCC-------CeeEEEeEEEEEeCCcccccCceeEEEEEEEEE--EECCc
Q psy5646 2 GKLYKDEDAVLSWNGHGT-KGSQAIVKYISELP-------PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTV--VYKNM 71 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~~-~G~~~I~~~l~~lp-------~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v--~~~~~ 71 (106)
..+|.+ ++.+...+... .|+++|.+.+...+ .+.|.+.........+ ...+...-.+ ...+.
T Consensus 41 ~~lf~~-Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i~~~gd-------~A~~~~~~~~~~~~~~~ 112 (155)
T 2rfr_A 41 SELWVE-DGEYAVVGFATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVEGD-------TATARCHSVVFRCVSGT 112 (155)
T ss_dssp HTTEEE-EEEEEETTSCCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEETT-------EEEEEEEEEEEEEETTE
T ss_pred HhhcCC-ceEEEcCCCccccCHHHHHHHHHhccccccCCCceeEeCCCeEEEEeCC-------EEEEEEEEEEEEEcCCC
Confidence 367888 88888776666 99999999998762 4778877655543332 1111111111 12222
Q ss_pred e-eeee-eEEEEEEEeCCeEEEEceeEEeeec
Q psy5646 72 K-KTGF-NQNFIISAEGARWKIISDVFRLQQT 101 (106)
Q Consensus 72 ~-~~~F-~qtFvL~~~~~~y~I~nD~fR~~~~ 101 (106)
. .... ..++.+...+++|+|..-.+++...
T Consensus 113 ~~~~~~g~y~d~~~r~~g~Wri~~r~~~~~~~ 144 (155)
T 2rfr_A 113 FGSHRVSANRWTFRRTPAGWRAVRRENALLDG 144 (155)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEEEEESSS
T ss_pred ceEEEeeeeEEEEEECCCEEEEEEEEEEecCC
Confidence 1 1111 1346777888999999988877643
No 30
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=95.10 E-value=0.32 Score=30.35 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=54.3
Q ss_pred CCCCCCCCceEEEcC--CccccHHHHHHHH----HcCC-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC--Cce
Q psy5646 2 GKLYKDEDAVLSWNG--HGTKGSQAIVKYI----SELP-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK--NMK 72 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG--~~~~G~~~I~~~l----~~lp-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~--~~~ 72 (106)
..+|.+ ++.+.--+ ....|+++|.+.+ ...| ..++++.....+...+ ..++...-.+... +..
T Consensus 30 ~~l~a~-D~v~~~~~~~~~~~G~~air~~~~~~~~~~~~~~~~~~~~~~v~~~gd-------~A~~~~~~~~~~~~~~g~ 101 (142)
T 3f7s_A 30 IAPYAD-DIVAFDAIQALQFKGKSAYTAHWEMCMGMCTGPMVFELAQLTVHAAGD-------LALAHWLNRCGPGDDESQ 101 (142)
T ss_dssp HTTEEE-EEEEECSSSSSCEESHHHHHHHHHHHHHTCCSCEEEEEEEEEEEEETT-------EEEEEEEEEEEESSCGGG
T ss_pred HhhcCC-CEEEecCCCCccccCHHHHHHHHHHHHHhCCCceEEEEeeeEEEEcCC-------EEEEEEEEEEeeecCCCc
Confidence 357877 76543222 2457999998775 4445 6677777776664443 2233222233321 113
Q ss_pred eeeeeEEEEEEEeCCeEEEEceeEEee
Q psy5646 73 KTGFNQNFIISAEGARWKIISDVFRLQ 99 (106)
Q Consensus 73 ~~~F~qtFvL~~~~~~y~I~nD~fR~~ 99 (106)
....-.|+++...+++|+|..+..-+-
T Consensus 102 ~~~~r~T~v~~r~~g~W~ivh~H~S~p 128 (142)
T 3f7s_A 102 CGFMRATVGYRRQGGQWQVIHEHWSAP 128 (142)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ceeeEEEEEEEEeCCEEEEEEEeeccC
Confidence 444567888889999999998877653
No 31
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=94.58 E-value=0.45 Score=29.46 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=51.4
Q ss_pred CCCCCCCceE-E-EcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646 3 KLYKDEDAVL-S-WNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ 78 (106)
Q Consensus 3 ~~Y~~~~s~l-~-~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q 78 (106)
++|.+ ++.+ . ..|....|.++|.++-..++ ....++.........+. ... +...+...+. .....+
T Consensus 37 ~lf~~-d~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d------~A~--~~~~~~~~~~-~~~g~~ 106 (129)
T 2rcd_A 37 ELFWH-DEKTVRYGAGENLYGIEEIRAFRLARPSAGLDRALRNTVITTYGHD------MAV--ASTEFTRTGS-TKIGRQ 106 (129)
T ss_dssp HHBCC-STTCEEEETTEEEESHHHHHHHHHHSCCTTCCCEEEEEEEEEBTTS------EEE--EEEEEECSSC-CSCEEE
T ss_pred HhccC-CCCEEEECCCCccCCHHHHHHHHHhcCCCCCceEEEEEEEEEecCc------EEE--EEEEEEEcCC-CCceeE
Confidence 56777 6543 2 35668899999999335555 24455545555444331 222 3344444432 233456
Q ss_pred EEEEEEeCCeEEEEceeEE
Q psy5646 79 NFIISAEGARWKIISDVFR 97 (106)
Q Consensus 79 tFvL~~~~~~y~I~nD~fR 97 (106)
|.++...+++|+|.....-
T Consensus 107 t~v~~r~~~gWrIv~~H~S 125 (129)
T 2rcd_A 107 MQTWVKMPEGWRIVAAHVS 125 (129)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred EEEEEECCCcEEEEEEecC
Confidence 8888889999999987654
No 32
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=94.26 E-value=0.37 Score=32.26 Aligned_cols=78 Identities=8% Similarity=0.038 Sum_probs=48.9
Q ss_pred CCccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc---------ee--eeeeEEE
Q psy5646 16 GHGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM---------KK--TGFNQNF 80 (106)
Q Consensus 16 G~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~---------~~--~~F~qtF 80 (106)
|..+.|+++|.+.+... |..++++..+......+ ..++.+...+...+. +. +.+--|.
T Consensus 65 ~~~l~G~~~I~~~~~~~f~~~~~~~~~~~dv~v~~~gD-------~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~ 137 (170)
T 3cnx_A 65 WPVLSGRGEVLRSYALIMANTEYIQFFLTDVHVSVTGD-------TALVTCTENILSGGPPPDDSDELGPLVGQLVVATN 137 (170)
T ss_dssp CCEEEHHHHHHHHHHHHHHTCSEEEEEEEEEEEEEETT-------EEEEEEEEEEEEEC---------CCCEEEEEEEEE
T ss_pred CccccCHHHHHHHHHHHHccCCeeEEEEEEEEEEEeCC-------EEEEEEEEEEeccCCccccccccCccccceEEEEE
Confidence 46789999999877543 23455555555544443 345555555554211 21 2255788
Q ss_pred EEEEeCCeEEEEceeEEeee
Q psy5646 81 IISAEGARWKIISDVFRLQQ 100 (106)
Q Consensus 81 vL~~~~~~y~I~nD~fR~~~ 100 (106)
++...+++|+|..+..-.+.
T Consensus 138 Vfrr~~ggWriv~hH~Sp~~ 157 (170)
T 3cnx_A 138 VFRRTPDGWKLWSHHASPVL 157 (170)
T ss_dssp EEECCTTCCEEEEEEEEECC
T ss_pred EEEEECCEEEEEEEecCCCC
Confidence 88888899999998776544
No 33
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=93.87 E-value=0.22 Score=36.79 Aligned_cols=86 Identities=14% Similarity=0.198 Sum_probs=62.5
Q ss_pred CCCCCCCceEE--EcCCccccHHHHHHHHHcCC-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC--Cc-eeeee
Q psy5646 3 KLYKDEDAVLS--WNGHGTKGSQAIVKYISELP-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK--NM-KKTGF 76 (106)
Q Consensus 3 ~~Y~~~~s~l~--~nG~~~~G~~~I~~~l~~lp-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~--~~-~~~~F 76 (106)
.||.+ ++.|. ++ .++.|+++|..++.+-- ..+.....--+.|..+ +..-+.|+|.|+.. |. ..+.=
T Consensus 215 aLFA~-Dg~LepPf~-~PIvGreAI~~y~~~eaq~~~l~P~~g~~ep~e~------g~~qi~vtGkVqTpwfGv~v~mnV 286 (323)
T 3mg1_A 215 ELFTS-DGALQPPFQ-RPIVGKENVLRFFREECQNLKLIPERGVTEPAED------GFTQIKVTGKVQTPWFGGNVGMNI 286 (323)
T ss_dssp TTEEE-EEEEECTTS-CCEESHHHHHHHHHHHCTTCEEEEEEEEEEECGG------GCEEEEEEEEEECTTTGGGCCEEE
T ss_pred HHccC-CCeeCCCCC-CCccCHHHHHHHHHHHhccCEEeeccCccccccC------CCceEEEEEEEEcccCCccccccc
Confidence 46666 66655 34 79999999999996644 6677777777778877 47899999999954 22 23455
Q ss_pred eEEEEEEEeCCeEEEEceeE
Q psy5646 77 NQNFIISAEGARWKIISDVF 96 (106)
Q Consensus 77 ~qtFvL~~~~~~y~I~nD~f 96 (106)
.-.|.|-+++.-++|.=|.+
T Consensus 287 aW~F~lN~~gkI~~v~i~LL 306 (323)
T 3mg1_A 287 AWRFLLNPEGKIFFVAIDLL 306 (323)
T ss_dssp EEEEEECTTSCEEEEEEEEB
T ss_pred eeEEEECCCCcEEEEEehhh
Confidence 67889988888777775543
No 34
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=93.55 E-value=0.88 Score=29.08 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=55.0
Q ss_pred CCCCCCCCceEEEcC-C--ccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC-Ccee
Q psy5646 2 GKLYKDEDAVLSWNG-H--GTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK-NMKK 73 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG-~--~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~-~~~~ 73 (106)
..+|.+ ++.+.+.+ . ...|+++|.+.+... +.+.|.+.......+.++. -.+...+.....-+ +.+.
T Consensus 51 ~~lfte-Da~~~~~~~g~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~~~~gd~----A~~~~~~~~~~~~~~g~~~ 125 (163)
T 3b8l_A 51 LDVFTE-DAVFDLSGIGLTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGYEGDT----ASMRAYVIGMGVGKDGRAV 125 (163)
T ss_dssp HTTEEE-EEEEECGGGTCCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECSSE----EEEEEEEEEEEEETTSCEE
T ss_pred HhhcCC-CEEEEecCCCCCCccCHHHHHHHHHHhhccCCceEEEecCEEEEEeCCCE----EEEEEEEEEEEEcCCCCeE
Confidence 357888 88876632 2 688999999888653 3667888776665332210 01111122211112 2222
Q ss_pred -eeeeEEEEEEEeCCeEEEEceeEEeee
Q psy5646 74 -TGFNQNFIISAEGARWKIISDVFRLQQ 100 (106)
Q Consensus 74 -~~F~qtFvL~~~~~~y~I~nD~fR~~~ 100 (106)
..-.-++.+...+++|+|..-.+++.-
T Consensus 126 ~~~g~y~d~~~r~dg~WrI~~r~~~~~~ 153 (163)
T 3b8l_A 126 TVNGRYFFEVRRTEKGWKATRYTMDFLM 153 (163)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEESS
T ss_pred EEEEEEEEEEEEeCCEEEEEEEEEEEEe
Confidence 122356677788899999998887653
No 35
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=93.44 E-value=0.086 Score=33.85 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=50.9
Q ss_pred CCCCCCCCceEEEcCCccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc-eeeee
Q psy5646 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM-KKTGF 76 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~-~~~~F 76 (106)
..||.| ++.+...|.+..|+++|.+++..+ |.++|.+.......-. +...+-..++|+.+ +|. -....
T Consensus 29 ~~Lfa~-Dav~~~~~~~~~G~~ai~~F~~~~~~a~~~~~~~~~~~v~~~~g-----d~~~~~w~~~g~~~-~G~~~~~~g 101 (131)
T 3er7_A 29 ISLFSD-EITFVLNGQEQHGIDAWKQFVRMVFTANQDIKHMYAGWVPSETG-----DTMETRWAVCGKSA-DGSVFTQDG 101 (131)
T ss_dssp HHTEEE-EEEEEETTEEEESHHHHHHHHHHHHHHEEEEEEEECCCEECSST-----TCEEEEEEEEEEET-TSCEEEEEE
T ss_pred HHHhCC-CeEecCCCCCcCChHHHHHHHHHHHhhCcCceEEEEEEEEecCC-----CEEEEEEEEEEEEC-CCCEEEEee
Confidence 358999 998855677789999999999876 4667766543322111 11345666667632 232 23333
Q ss_pred eEEEEEEEeC--CeEEEEceeEEe
Q psy5646 77 NQNFIISAEG--ARWKIISDVFRL 98 (106)
Q Consensus 77 ~qtFvL~~~~--~~y~I~nD~fR~ 98 (106)
.-.|-+..++ ....+..|.+-+
T Consensus 102 ~dv~~fd~dGkI~~~~~~~d~~~~ 125 (131)
T 3er7_A 102 TDIARLNADGKIVYLANVPDDTAM 125 (131)
T ss_dssp EEEEEECTTSCEEEEEEEECCC--
T ss_pred eEEEEEcCCCcEEEEEEccChHHH
Confidence 4444444334 345555555433
No 36
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=93.32 E-value=0.91 Score=28.60 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=53.3
Q ss_pred CCCCCCCce-EEEc-CCccccHHHHHHHHHcCCC--eeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646 3 KLYKDEDAV-LSWN-GHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ 78 (106)
Q Consensus 3 ~~Y~~~~s~-l~~n-G~~~~G~~~I~~~l~~lp~--~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q 78 (106)
.+|.+ +.. +.+. |....|.++|..+...++. .++.+.....+...+. ...+ ...+...+.+ ..+-+
T Consensus 34 ~lf~~-d~~~v~~~~g~~l~G~~~I~a~r~~~~~~~~~~~~~~~~i~~~g~d------~A~~--~~~~~~~~~~-~~gr~ 103 (129)
T 2owp_A 34 ALFWH-TPETVRYGIAEVQHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGTD------FATV--STEFTSDATP-LLGRQ 103 (129)
T ss_dssp HTBCC-STTCEEECSSCEEESHHHHHHHHHHSCCCCTTCEEEEEEEEEETTT------EEEE--EEEEEETTEE-EEEEE
T ss_pred hhccC-CCcEEEeCCCCccCCHHHHHHHHHhcCCCCCceeecccEEEEecCC------EEEE--EEEEEECCCC-cceEE
Confidence 56777 654 5453 4578999999998877763 3555555555555431 2222 2344555554 23345
Q ss_pred EEEEEEeC--CeEEEEceeEEeee
Q psy5646 79 NFIISAEG--ARWKIISDVFRLQQ 100 (106)
Q Consensus 79 tFvL~~~~--~~y~I~nD~fR~~~ 100 (106)
|.+....+ ++|+|.....-.+.
T Consensus 104 t~vw~r~~~~~gWrIv~~H~S~~~ 127 (129)
T 2owp_A 104 MQTWARLSPADGWKIVAAHVSLIA 127 (129)
T ss_dssp EEEEEECSTTTCEEEEEEEEEEEC
T ss_pred EEEEEECCCCCCEEEEEeeecCCC
Confidence 55556666 89999988766553
No 37
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=93.09 E-value=0.81 Score=27.35 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=49.0
Q ss_pred CCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEE--ECCce-eeeeeE
Q psy5646 4 LYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVV--YKNMK-KTGFNQ 78 (106)
Q Consensus 4 ~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~--~~~~~-~~~F~q 78 (106)
++.| +.....-+....|++++.+.+.+-+ ....++..+.++...+ ..+++. ...+. .++.+ ...+-.
T Consensus 30 l~~~-d~~~~~~~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~g~------~a~~~~-~~~~~~~~~g~~~~~~~r~ 101 (123)
T 2r4i_A 30 LLHD-DLLFIIPSGETVTKETDIAAYSSGKIALRAVVPSDYIIRIIHD------TVVVSV-NIEIKGEYMEHTLDNTFRY 101 (123)
T ss_dssp HEEE-EEEEECTTSCEECHHHHHHHHHTTCEEEEEEEEEEEEEEEETT------EEEEEE-EEEEEEEETTEEEEEEEEE
T ss_pred hhCc-CeEEECCCCCCccHHHHHHHHhcCCeEEEEEeecccEEEEECC------EEEEEE-EEEEEEEECCcceeEEEEE
Confidence 4455 4333333335678888777776654 3456667777777665 234433 22222 34543 223445
Q ss_pred EEEEEEeCCeEEEEceeE
Q psy5646 79 NFIISAEGARWKIISDVF 96 (106)
Q Consensus 79 tFvL~~~~~~y~I~nD~f 96 (106)
|.+....+++|.|.....
T Consensus 102 t~vw~r~~g~W~iv~~h~ 119 (123)
T 2r4i_A 102 LRVWKLFDGNWKVIAGSC 119 (123)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeCCeEEEEEEEE
Confidence 667777889999987654
No 38
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=90.35 E-value=2.1 Score=26.40 Aligned_cols=85 Identities=13% Similarity=0.235 Sum_probs=49.8
Q ss_pred CCCCCCCCceEEE-c-CCc--cccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCcee
Q psy5646 2 GKLYKDEDAVLSW-N-GHG--TKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKK 73 (106)
Q Consensus 2 ~~~Y~~~~s~l~~-n-G~~--~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~ 73 (106)
.+.|++ ++.+.. . |.. ....++..+.+.+- |...+.|.+++... + ...+.+... .+. .
T Consensus 34 ~~~f~~-da~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~i~g--d-------~A~a~~~~~-~~~---~ 99 (128)
T 3blz_A 34 RPAFSS-QATIFGVDVDNKLTGGPIQGLFDVIDNVFHPSPEAKAAIARIDIVG--T-------AASARIDTD-DIS---G 99 (128)
T ss_dssp GGGEEE-EEEEEEECTTSCEEEEETHHHHHHHHHTCCCCTTCEEEEEEEEEET--T-------EEEEEEEEE-EET---T
T ss_pred HHhhCC-CcEEEEEeCCCcEEecCHHHHHHHHHhcCCCCccccCeEEEEEEEC--C-------EEEEEEEEE-EcC---C
Confidence 356777 777654 2 222 22344555544333 46677776666542 3 122222221 222 2
Q ss_pred eeeeEEEEEEEeCCeEEEEceeEEeee
Q psy5646 74 TGFNQNFIISAEGARWKIISDVFRLQQ 100 (106)
Q Consensus 74 ~~F~qtFvL~~~~~~y~I~nD~fR~~~ 100 (106)
..|...|.|...+++|.|.+-.|+...
T Consensus 100 ~~~~d~~~l~k~dg~WkI~~~~~~~~~ 126 (128)
T 3blz_A 100 FRFTDFFNLLKVEGKWTVVSKIYHTHP 126 (128)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred CceEEeEEEEEECCEEEEEEEEEEecc
Confidence 458888999999999999999988654
No 39
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=89.92 E-value=2 Score=27.33 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=47.8
Q ss_pred CCCCCCCCc--eEEEcCCccccHHHHHHHHHc--CC----CeeEEEeEEE-EEeCCcccccCceeE---EEEEEEEEEEC
Q psy5646 2 GKLYKDEDA--VLSWNGHGTKGSQAIVKYISE--LP----PCDHELKSMD-IHRLPEEAAQNQIAY---LISTSGTVVYK 69 (106)
Q Consensus 2 ~~~Y~~~~s--~l~~nG~~~~G~~~I~~~l~~--lp----~~~h~i~s~D-~q~~~~~~~~~~~~i---li~V~G~v~~~ 69 (106)
..+|.+ +. ..+.-+....|.++|.+.+.+ +. ...+.+.... .+...+ ..+ ...+.|.+..+
T Consensus 32 ~~l~~~-~~~~~~i~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~v~gd------~A~v~~~~~~~~~~~~~ 104 (145)
T 3soy_A 32 KQLFYV-SPETSFIHPRGHERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIHVYGN------AAVAEFDWHFTAVRRDN 104 (145)
T ss_dssp TTTBCC-SSSCEEEETTEEEESHHHHHHHCCCCCCCCTEEEEEEEESSCCEEEEETT------EEEEEEEEEEEEEETTT
T ss_pred HHHHhC-CCCeEEEcCCCcccCHHHHHHHHHHhhhhccccccceEEeeeeEEEEcCC------EEEEEEEEEEEEEEcCC
Confidence 457766 43 233333357999999888753 22 1223333344 343333 122 11233433334
Q ss_pred Cce-eeeeeEEEEEEEeC-CeEEEEceeEE
Q psy5646 70 NMK-KTGFNQNFIISAEG-ARWKIISDVFR 97 (106)
Q Consensus 70 ~~~-~~~F~qtFvL~~~~-~~y~I~nD~fR 97 (106)
|.+ ...+-.|.++...+ ++|+|.....-
T Consensus 105 G~~~~~~~r~T~V~~r~~~ggWkIvh~H~S 134 (145)
T 3soy_A 105 GQTQHTTGRESQVWAKIPNTGWRIVHVHYS 134 (145)
T ss_dssp CCEEEEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred CCeeeeEEEEEEEEEEcCCCCEEEEEEecC
Confidence 553 23456777778844 99999987754
No 40
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=89.28 E-value=0.65 Score=28.85 Aligned_cols=80 Identities=14% Similarity=0.264 Sum_probs=48.4
Q ss_pred CCCCCCceEEE--cCCccc-cHHHHHHHHHcCCCe-----eEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeee
Q psy5646 4 LYKDEDAVLSW--NGHGTK-GSQAIVKYISELPPC-----DHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTG 75 (106)
Q Consensus 4 ~Y~~~~s~l~~--nG~~~~-G~~~I~~~l~~lp~~-----~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~ 75 (106)
-|++ ++.+.+ +|.... ..++..+ +..-|.. ..+|.++|... + ...+.|. +.+ +...
T Consensus 33 ~Fhp-dA~~~~~~~g~~~~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~g--d-------~A~a~v~--~~~---~~~~ 96 (120)
T 3fka_A 33 IFFG-KASEVGHYEGELLWNSRDAFIA-MCEDAADAETDPFWAISSVSVQG--D-------IAMLHVE--NDW---AGMR 96 (120)
T ss_dssp HEEE-EEEEEEEETTEEEEEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEET--T-------EEEEEEE--EEE---TTEE
T ss_pred hCCC-CeEEEEecCCcEEEcCHHHHHh-hcCCccCCCCCceEEEEEEEEEC--C-------EEEEEEE--EEc---CCCc
Confidence 4667 777643 343322 2344555 4433322 34577777653 2 2233333 222 2467
Q ss_pred eeEEEEEEEeCCeEEEEceeEEee
Q psy5646 76 FNQNFIISAEGARWKIISDVFRLQ 99 (106)
Q Consensus 76 F~qtFvL~~~~~~y~I~nD~fR~~ 99 (106)
|...|.|...+++|.|.|-+|++.
T Consensus 97 f~D~~~L~k~dg~WkIv~K~~~~~ 120 (120)
T 3fka_A 97 FDDFLTVLLHEGSWRIVSKVYRIR 120 (120)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eEEEEEEEEeCCEEEEEEEEEEcC
Confidence 999999999999999999999863
No 41
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=88.42 E-value=3.7 Score=26.70 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=53.2
Q ss_pred CCCCCCCCceEEEcC-CccccHHHHHHHH-Hc----CCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEE--ECCc-e
Q psy5646 2 GKLYKDEDAVLSWNG-HGTKGSQAIVKYI-SE----LPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVV--YKNM-K 72 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG-~~~~G~~~I~~~l-~~----lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~--~~~~-~ 72 (106)
..+|.+ ++.+.+.+ ....|+++|.+.+ .. .+.+.|.+........... ...+.....+. .... .
T Consensus 53 ~~lfte-Da~~~~~~~g~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~~g~d------~A~~~~~~~~~~~~~~~~~ 125 (176)
T 3a76_A 53 ASIWWD-DAEWTIEGIGTYKGPEGALDLANNVLWPMFHECIHYGTNLRLEFVSAD------KVNGIGDVLLLGNLVEGNQ 125 (176)
T ss_dssp HTTEEE-EEEEEETTTEEEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEESSSS------EEEEEEEEEEEEEETGGGE
T ss_pred HhhccC-CeEEEcCCCccccCHHHHHHHHHHhhhcccCceEEecCCeEEEEcCCC------eEEEEEEEEEEEEecCCCc
Confidence 357888 88877654 2578999999988 54 2477888877666554311 12221111111 2222 1
Q ss_pred eee--eeEEEEEEEeCCeEEEEceeEEee
Q psy5646 73 KTG--FNQNFIISAEGARWKIISDVFRLQ 99 (106)
Q Consensus 73 ~~~--F~qtFvL~~~~~~y~I~nD~fR~~ 99 (106)
... -.-+..++..+++|+|..-.+++.
T Consensus 126 ~~~~~gry~d~l~r~dg~WrI~~r~~~~~ 154 (176)
T 3a76_A 126 SILIAAVFTDEYERRDGVWKFSKRNACTN 154 (176)
T ss_dssp EEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 111 123445677789999999877653
No 42
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=85.28 E-value=4.9 Score=24.94 Aligned_cols=85 Identities=6% Similarity=0.063 Sum_probs=53.5
Q ss_pred CCCCCCCceEEEcCCccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646 3 KLYKDEDAVLSWNGHGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ 78 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q 78 (106)
+.|.+ +..++--+-...|++++.+.|.+. |..+.++..+..-...+ .++++.-.+.=..++......+
T Consensus 34 a~~a~-d~~mv~p~G~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~------d~~vv~y~~~~~~~~~~~~rrs- 105 (128)
T 1tp6_A 34 ARFAE-DFSMVTPHGVVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGV------DGATLAYREIQSDAAGRSERLS- 105 (128)
T ss_dssp TTEEE-EEEEECTTSCEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEET------TEEEEEEEEEEEETTEEEEEEE-
T ss_pred HhcCC-CEEEECCCCeECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecC------CEEEEEEEEEeccCCceeEEEE-
Confidence 56888 777765455788999998888664 45555555555533322 2556665444444554555666
Q ss_pred EEEEEEe-CC--eEEEEcee
Q psy5646 79 NFIISAE-GA--RWKIISDV 95 (106)
Q Consensus 79 tFvL~~~-~~--~y~I~nD~ 95 (106)
|.+|.+. ++ .|.+.-+.
T Consensus 106 T~v~~~~~~g~~~W~~lHET 125 (128)
T 1tp6_A 106 TVVLHRDDEGRLYWRHLQET 125 (128)
T ss_dssp EEEEEECTTCCEEEEEEEEE
T ss_pred EEEEEeCCCCCEEEEEEEEE
Confidence 8888655 45 58877665
No 43
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=84.24 E-value=4.3 Score=27.52 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=42.0
Q ss_pred CCCCCCCCceEEE----cCC--ccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEE--EEECCc
Q psy5646 2 GKLYKDEDAVLSW----NGH--GTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGT--VVYKNM 71 (106)
Q Consensus 2 ~~~Y~~~~s~l~~----nG~--~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~--v~~~~~ 71 (106)
..||.+ ++.+.+ .|- .+.|+++|.+++..++ --..++..+..+.+.+. ..+++-..|. +...|.
T Consensus 62 ~eLfAe-Dav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~d~~~~~~~v~~taDp-----d~VvvE~~~~Gtv~~TGk 135 (185)
T 3jum_A 62 HLLFTE-DGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPDWVWTDIQIFETQDP-----NWFWVECRGEGAIVFPGY 135 (185)
T ss_dssp GGGEEE-EEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHSTTCEEEEEEEECCSST-----TEEEEEEEEEEEECCTTS
T ss_pred HHhCCC-CEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCCCCeeeEEEEEEecCC-----CEEEEEEEEEEEEcCCCC
Confidence 467888 877776 343 3789999999987765 11244555666665442 2455555544 445565
Q ss_pred eeeeeeE
Q psy5646 72 KKTGFNQ 78 (106)
Q Consensus 72 ~~~~F~q 78 (106)
+...|.+
T Consensus 136 p~~~Y~~ 142 (185)
T 3jum_A 136 PRGQYRN 142 (185)
T ss_dssp CCEEEEE
T ss_pred ccceEEE
Confidence 4233444
No 44
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=83.94 E-value=6.2 Score=25.04 Aligned_cols=86 Identities=15% Similarity=0.271 Sum_probs=56.2
Q ss_pred CCCCCCCceEEEc---CCccccHHHHHHHHHcCC-C--eeEEEeEEEEEeCCcccccCceeEEE-EEEEEEEECCceeee
Q psy5646 3 KLYKDEDAVLSWN---GHGTKGSQAIVKYISELP-P--CDHELKSMDIHRLPEEAAQNQIAYLI-STSGTVVYKNMKKTG 75 (106)
Q Consensus 3 ~~Y~~~~s~l~~n---G~~~~G~~~I~~~l~~lp-~--~~h~i~s~D~q~~~~~~~~~~~~ili-~V~G~v~~~~~~~~~ 75 (106)
++|.+ +.. .++ ++.+.|.+++..+|..++ + +++++.....|...+ .+++- .+. ...++. ...
T Consensus 37 ~lyap-Dvt-~fDp~~~~~~~G~~a~r~yf~~~~~~~~~~~ei~~p~V~v~gD------~A~~~y~l~--~~~~~~-~~~ 105 (134)
T 3ke7_A 37 ELSDT-DVI-YFDPSLETKIEGLEQLRTYYKGMQLPPADHFDMIRPVVQVAQN------IAVLTFNLD--SYLSDK-VIK 105 (134)
T ss_dssp HHEEE-EEE-EECTTCSSCEESHHHHHHHHHHHCCCCCSEEEEEEEEEEEETT------EEEEEEEEE--EEETTE-EEE
T ss_pred HhcCC-CEE-EEcCCCccccCCHHHHHHHHHhcccCCcceEEEeCCeEEEeCc------eEEEEEEEE--EeeCCC-cEE
Confidence 45666 544 233 346889999999998865 3 567777777676433 23221 111 223333 456
Q ss_pred eeEEEEEEEe-CCeEEEEceeEEee
Q psy5646 76 FNQNFIISAE-GARWKIISDVFRLQ 99 (106)
Q Consensus 76 F~qtFvL~~~-~~~y~I~nD~fR~~ 99 (106)
...|++.... +++|.|.....-+.
T Consensus 106 ~r~T~V~~r~~dG~W~ivH~H~S~~ 130 (134)
T 3ke7_A 106 WNCTEVYRRNPDNQWKIIQTHWSYV 130 (134)
T ss_dssp EEEEEEEEECTTSBEEEEEEEEEES
T ss_pred EEEEEEEEEcCCCcEEEEEEeeccc
Confidence 7899999999 89999998877664
No 45
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=81.74 E-value=7.5 Score=24.38 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=52.2
Q ss_pred CCCCCCCCceEEEcC-CccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCc-ccccCceeEEEEEEEEEEEC-Cce-e
Q psy5646 2 GKLYKDEDAVLSWNG-HGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPE-EAAQNQIAYLISTSGTVVYK-NMK-K 73 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG-~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~-~~~~~~~~ili~V~G~v~~~-~~~-~ 73 (106)
..+|.+ ++.+.+.+ ....|+++|.+.+..+ +.+.|.+.........+ .+ .....+....... +.+ .
T Consensus 33 ~~lFt~-D~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~gdd~A-----~~~~~~~~~~~~~~~~~~~ 106 (150)
T 3ef8_A 33 AALFVE-DCEVSYAPNFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSETEA-----NVRSVVLAIHRYTKERPDG 106 (150)
T ss_dssp HTTEEE-EEEEEEETTEEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEETTEE-----EEEEEEEEEEEESSSSCCE
T ss_pred HhhccC-ceEEEccCCCCCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcCCCEE-----EEEEEEEEEEEccCCCCeE
Confidence 357888 88877644 3578999999988775 36788888766655432 11 1111111111112 221 1
Q ss_pred eee-eEEEEEEEeCCeEEEEceeEEee
Q psy5646 74 TGF-NQNFIISAEGARWKIISDVFRLQ 99 (106)
Q Consensus 74 ~~F-~qtFvL~~~~~~y~I~nD~fR~~ 99 (106)
... -....++..+++|+|..=.+++.
T Consensus 107 ~~~gry~d~~~r~dg~Wri~~r~~~~d 133 (150)
T 3ef8_A 107 ILYGQYFDTVVKVDGQWKFKRRELRTT 133 (150)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEECCEEEEEEEEEEec
Confidence 110 12334556789999998877553
No 46
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=80.16 E-value=7.2 Score=23.17 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=39.7
Q ss_pred CCCCCCceEEEcCC-ccccHHHHHHHHHcCC----CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEE---CCc-eee
Q psy5646 4 LYKDEDAVLSWNGH-GTKGSQAIVKYISELP----PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVY---KNM-KKT 74 (106)
Q Consensus 4 ~Y~~~~s~l~~nG~-~~~G~~~I~~~l~~lp----~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~---~~~-~~~ 74 (106)
++.+ +..-...|. +..|++++.+.+..+. ..++++..+=++ + . .+.|.|.+.. +|. ...
T Consensus 24 ~lad-Dv~w~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~i~~---G-------d-~Vvv~~~~~~~~~~g~~~~~ 91 (112)
T 3f14_A 24 CFND-IIEWNIIGNQVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQN---E-------N-QIVIEGKCRYFDAEGKEAFV 91 (112)
T ss_dssp GEEE-EEEEEETTTEEEESHHHHHHHHHHHHHHHHTSEEEEEEEEEC---S-------S-EEEEEEEEEEECTTSCEEEE
T ss_pred hcCC-ceEEEEcCCccEecHHHHHHHHHHHHhhcCCcEEEEEEEEEe---C-------C-EEEEEEEEEEEeCCCCEEEE
Confidence 4444 433222444 5889999999887765 356666653322 1 1 4555565553 233 356
Q ss_pred eeeEEEEEE
Q psy5646 75 GFNQNFIIS 83 (106)
Q Consensus 75 ~F~qtFvL~ 83 (106)
.|+..|-+.
T Consensus 92 ~~~~vf~~~ 100 (112)
T 3f14_A 92 SYCDIYRFE 100 (112)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 788888875
No 47
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=79.71 E-value=9.1 Score=24.06 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=23.3
Q ss_pred CCCCCCCCceEEE--cCCccccHHHHHHHHHcCC
Q psy5646 2 GKLYKDEDAVLSW--NGHGTKGSQAIVKYISELP 33 (106)
Q Consensus 2 ~~~Y~~~~s~l~~--nG~~~~G~~~I~~~l~~lp 33 (106)
..+|.+ ++.+.- .|.+..|+++|.+++..+.
T Consensus 47 ~~l~a~-D~v~~d~~~g~~~~Greai~~~~~~~~ 79 (158)
T 4h3u_A 47 GTLFAA-DGTYVDHAIGATMTGREQISGWKARTD 79 (158)
T ss_dssp HTTEEE-EEEEEETTTTEEEESHHHHHHHHHHHH
T ss_pred HHHhcc-cceEeccCCCceEecchhhhhhhhhhh
Confidence 467888 776553 3567899999999988764
No 48
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=76.46 E-value=0.95 Score=27.81 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCCCCCCceEEEcCCccccHHHHHHHHHc----CCCeeEEEe-EEEEEe
Q psy5646 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISE----LPPCDHELK-SMDIHR 46 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~----lp~~~h~i~-s~D~q~ 46 (106)
..+|.+ ++.+.---.++.|+++|.+++.. .|.+++.+. .++.++
T Consensus 29 ~~l~a~-D~~~~dP~~~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~ 77 (121)
T 3dxo_A 29 GQAWAE-NTRYVDPLMQGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG 77 (121)
T ss_dssp HHHEEE-EEEEECSSCEEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred HHhcCC-CeEEECCCCCcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence 356777 77766655579999999987654 577888887 667663
No 49
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=74.46 E-value=8 Score=22.42 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=23.7
Q ss_pred CCCCCCCCceEEEc--CCccccHHHHHHHHHcCC
Q psy5646 2 GKLYKDEDAVLSWN--GHGTKGSQAIVKYISELP 33 (106)
Q Consensus 2 ~~~Y~~~~s~l~~n--G~~~~G~~~I~~~l~~lp 33 (106)
..+|.+ +..+... +.+..|+++|.+++..+.
T Consensus 27 ~~l~a~-D~~~~~~~~~~~~~G~~~i~~~~~~~~ 59 (125)
T 1ohp_A 27 VALFAD-DATVENPVGSEPRSGTAAIREFYANSL 59 (125)
T ss_dssp HTTEEE-EEEEESSTTSCCEESHHHHHHHHHHHT
T ss_pred HHHcCC-CeEEECCCCCCCccCHHHHHHHHHHhc
Confidence 357888 7766653 358899999999998765
No 50
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=73.53 E-value=2.3 Score=26.96 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=26.8
Q ss_pred CCCCCCCCceEEEc--CCccccHHHHHH----HHHcCC
Q psy5646 2 GKLYKDEDAVLSWN--GHGTKGSQAIVK----YISELP 33 (106)
Q Consensus 2 ~~~Y~~~~s~l~~n--G~~~~G~~~I~~----~l~~lp 33 (106)
...|.+ ++.+.|- +..+.|++++.+ .+..+|
T Consensus 24 ~adyae-DaV~i~P~sa~vl~GR~~~r~a~~~L~~~lP 60 (120)
T 3lyg_A 24 VTDYVE-KMIFIMPGQADVLKGRQAFRSALDNLGEILP 60 (120)
T ss_dssp GGGEEE-EEEEECSSTTCEEESHHHHHHHHTTHHHHSC
T ss_pred HHhccc-CeEEEccCccceeecHHHHHHHHHHHHhhCC
Confidence 467999 9999998 568999999999 777888
No 51
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=71.84 E-value=2.4 Score=25.65 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=28.4
Q ss_pred CCCCCCCCceEEEc---------CCccccHHHHHHHHHc----CCCeeEEEeEE
Q psy5646 2 GKLYKDEDAVLSWN---------GHGTKGSQAIVKYISE----LPPCDHELKSM 42 (106)
Q Consensus 2 ~~~Y~~~~s~l~~n---------G~~~~G~~~I~~~l~~----lp~~~h~i~s~ 42 (106)
..+|.+ ++.+.-- +..+.|+++|.++|.. .|..++++..+
T Consensus 30 ~~l~a~-D~v~~~p~~~~~~g~~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T 3h3h_A 30 LSHYAD-GFEMSSPMIVQIAGEPSGRLRGKEQVGAYWREALRMIPDLHFEWIAT 82 (122)
T ss_dssp HTTEEE-EEEEECHHHHHHHC-CCCEEEHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHhcCC-CEEEECCCcccccCCCCCcEEcHHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 467877 7776532 4688999999988865 57777776554
No 52
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=66.12 E-value=20 Score=21.84 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=44.3
Q ss_pred CCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEE--ECCcee-eeee
Q psy5646 3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVV--YKNMKK-TGFN 77 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~--~~~~~~-~~F~ 77 (106)
+++.| +...+.-+....++++..+.+.+-+ ..+.++....++...+. ..++...-.+. .+|.+. ..+-
T Consensus 37 ~L~~~-d~~~v~~~G~~~~~~~~l~~~~~g~~~~~~~~~~~~~v~~~g~d------~Avv~~~~~~~~~~~g~~~~~~~~ 109 (134)
T 3fsd_A 37 TLLAD-DLAFVDHTGCVKTKQTHLEPYRAGLLKLSRLDLSDAVVRAAGED------GRVVVVRAVTAGVYDGEAFTETLR 109 (134)
T ss_dssp HHEEE-EEEEECTTSCEECHHHHHHHHHTTCEEEEEEEEEEEEEEESSTT------EEEEEEEEEEEEEETTEEEEEEEE
T ss_pred hhcCC-CEEEECCCCcCccHHHHHHHHHcCCceEEEEEEeccEEEEeCCC------EEEEEEEEEEEEEeCCcEEEEEEE
Confidence 34555 4443332234455666666665422 34556677777777651 23333222222 245432 2333
Q ss_pred EEEEEEEeCCe--EEEEceeE
Q psy5646 78 QNFIISAEGAR--WKIISDVF 96 (106)
Q Consensus 78 qtFvL~~~~~~--y~I~nD~f 96 (106)
+|-+....+++ |.|.....
T Consensus 110 ~t~vw~k~~g~~gWriv~~h~ 130 (134)
T 3fsd_A 110 FTRIWRRTQGPAGWKLVAGHC 130 (134)
T ss_dssp EEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEEECCCCccceEeEeEE
Confidence 44555566777 99987653
No 53
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=66.02 E-value=22 Score=22.44 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=50.9
Q ss_pred cCCccccHHHHHHHHHc--CCCeeEEEeEEEEEeCCcccccCceeEEE--EEEEEEEECCce-eeeeeEEEEEEEeCCeE
Q psy5646 15 NGHGTKGSQAIVKYISE--LPPCDHELKSMDIHRLPEEAAQNQIAYLI--STSGTVVYKNMK-KTGFNQNFIISAEGARW 89 (106)
Q Consensus 15 nG~~~~G~~~I~~~l~~--lp~~~h~i~s~D~q~~~~~~~~~~~~ili--~V~G~v~~~~~~-~~~F~qtFvL~~~~~~y 89 (106)
.|+.+.|.+.+...+.. ......++.....+...+. ..++. ..++....+|++ ...+-.|.++...+++|
T Consensus 49 ~g~~~~g~~~~r~~f~~~~~~~~~~~~~~~~V~~~g~d-----~Av~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~~g~W 123 (143)
T 2f86_B 49 LGNLIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGED-----AACVAYVKLTQFLDRNGEAHTRQSQESRVWSKKQGRW 123 (143)
T ss_dssp TTCCEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETTT-----EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEE
T ss_pred CCccccCHHHHHHHHhcccCCcceeEEEcceEEEeCCC-----EEEEEEEeeeeeccCCCCeeeEEEEEEEEEEEeCCcE
Confidence 57778999888866544 2245667777777777621 23322 123333234553 44678999999999999
Q ss_pred EEEceeEEee
Q psy5646 90 KIISDVFRLQ 99 (106)
Q Consensus 90 ~I~nD~fR~~ 99 (106)
.|.-...-..
T Consensus 124 kivH~H~S~~ 133 (143)
T 2f86_B 124 VCVHVHRSTQ 133 (143)
T ss_dssp EEEEEEEEC-
T ss_pred EEEEEeECCC
Confidence 9998776544
No 54
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=65.21 E-value=21 Score=21.93 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCCCCCCceEEEcCC--------ccccHHHHHHHHHcCC
Q psy5646 3 KLYKDEDAVLSWNGH--------GTKGSQAIVKYISELP 33 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG~--------~~~G~~~I~~~l~~lp 33 (106)
.+|.+ +......|. ...|++++.+++..+.
T Consensus 27 ~l~a~-Dv~~~~~g~~~~~p~~g~~~G~~av~~~~~~~~ 64 (143)
T 3dm8_A 27 TIIDD-NIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIA 64 (143)
T ss_dssp HHEEE-EEEEEEESCTTTCTTCEEEESHHHHHHHHHHHH
T ss_pred HhcCC-CeEEEecCCCCcCCCCccccCHHHHHHHHHHHH
Confidence 45666 655544453 3689999999998876
No 55
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=64.96 E-value=26 Score=22.85 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=30.7
Q ss_pred CCCCCCCCceEEEc---C------CccccHHHHHHHHHcCC-------CeeEEEeEEEEEe
Q psy5646 2 GKLYKDEDAVLSWN---G------HGTKGSQAIVKYISELP-------PCDHELKSMDIHR 46 (106)
Q Consensus 2 ~~~Y~~~~s~l~~n---G------~~~~G~~~I~~~l~~lp-------~~~h~i~s~D~q~ 46 (106)
..+|.+ ++.+.+. | ..+.|+++|.+.+.+.. .+.|.+.......
T Consensus 48 ~~lFt~-D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~~I~v 107 (179)
T 3ejv_A 48 AALFAP-EATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPIIVI 107 (179)
T ss_dssp HTTEEE-EEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEEEEE
T ss_pred HhhcCC-ceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCCEEEE
Confidence 357777 8877764 3 25789999999986542 3678887766654
No 56
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=64.67 E-value=22 Score=21.86 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=49.5
Q ss_pred CCCCCCCceEEEcCCccccHHHHHHHHHc----CC-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEE-CCceee-e
Q psy5646 3 KLYKDEDAVLSWNGHGTKGSQAIVKYISE----LP-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVY-KNMKKT-G 75 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~----lp-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~-~~~~~~-~ 75 (106)
.+|.+ ++.+..-..+..|+++|.+.+.. .| .+.|.+..+-.....+. ..+.....+.. .+.... .
T Consensus 33 ~lft~-Da~~~~~~g~~~g~~~i~~~~~~~~~~~~~~t~H~i~n~~i~~~~d~-------a~~~~~~~~~~~~~~~~~~~ 104 (144)
T 2rgq_A 33 ATFAS-DGALQGFWGIAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQGNYDE-------ATMESYLTVVNREDLNRAGS 104 (144)
T ss_dssp TTEEE-EEEEEETTEEEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSE-------EEEEEEEEEEESSSSCEEEE
T ss_pred hhccC-cEEEEcCCCCCCCHHHHHHHHHHHHhhCCCCcEEecCCeEEEEeCCE-------EEEEEEEEEEEecCCeEEEE
Confidence 56777 77766542345899999888754 23 58888887766443321 11111111111 111111 1
Q ss_pred eeEEEEEEEeCCeEEEEceeEEe
Q psy5646 76 FNQNFIISAEGARWKIISDVFRL 98 (106)
Q Consensus 76 F~qtFvL~~~~~~y~I~nD~fR~ 98 (106)
-.-...|+..+++|+|..-.+.+
T Consensus 105 g~y~d~~~r~dg~Wri~~r~~~~ 127 (144)
T 2rgq_A 105 AFVKDQVRKINGKWYLILRQIEV 127 (144)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEEEe
Confidence 12344566778899999977754
No 57
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=60.61 E-value=7 Score=25.52 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=38.1
Q ss_pred CCCCCCCCCceEEE--cCCccccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECC
Q psy5646 1 MGKLYKDEDAVLSW--NGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKN 70 (106)
Q Consensus 1 l~~~Y~~~~s~l~~--nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~ 70 (106)
|.+||.. +|.+.= -|....|+..|.++|+.-.....+-.. ..--+..+ |+ ||+..|...++|
T Consensus 41 L~~Fynr-dsVf~D~ta~~~YtG~r~Ii~Fl~RaH~gvLey~f-nieHmfns-----Gs-LVVmiGnY~~kG 104 (154)
T 3gzb_A 41 LITFYNR-DSIFFDKTANRKYTGGRFIIDFLERAHQGVLEYDF-NIEHMYNA-----GS-LVVMIGNYHFKG 104 (154)
T ss_dssp HHTTCCT-TCEEEETTTTEEEESHHHHHHHHHHHTTTCCCCEE-EEEEEEEE-----TT-EEEEEEEEEEEE
T ss_pred HHHHhCc-cceeeeeccCcceeCcHHHHHHHHHHhhhheeecc-ChhhhccC-----Cc-EEEEEcceeecC
Confidence 4689999 998775 467889999999999876522111111 11111121 23 667778866654
No 58
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=60.19 E-value=28 Score=21.68 Aligned_cols=39 Identities=13% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCCCCCCceEEE-cCCccccHHHHHHHHHcCC-CeeEEEeEE
Q psy5646 3 KLYKDEDAVLSW-NGHGTKGSQAIVKYISELP-PCDHELKSM 42 (106)
Q Consensus 3 ~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~lp-~~~h~i~s~ 42 (106)
.+|.+ +..+.. .|.+..|+++|.+++..++ .....+..+
T Consensus 43 ~l~a~-D~v~~~p~g~~~~G~e~i~~~~~~~~~~~~~~~~~~ 83 (151)
T 3f7x_A 43 ALLSE-DVIHDINQGERQMGKARFAAFMEKMNRCYRERLADI 83 (151)
T ss_dssp HTEEE-EEEEECTTSCEEESHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HhcCC-CEEEECCCCCCcCCHHHHHHHHHHHHHhhccceeEE
Confidence 56777 777543 3568899999999999887 333444433
No 59
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=57.17 E-value=28 Score=20.75 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCCCCCCceEEEc-CCccccHHHHHHHHHcCCC
Q psy5646 3 KLYKDEDAVLSWN-GHGTKGSQAIVKYISELPP 34 (106)
Q Consensus 3 ~~Y~~~~s~l~~n-G~~~~G~~~I~~~l~~lp~ 34 (106)
.+|.+ +...... |....|+++|.+++..++.
T Consensus 31 ~l~a~-D~~~~~p~~~~~~G~~~~~~~~~~~~~ 62 (140)
T 3i0y_A 31 AFLAE-DVAHDLNQGPREIGRAAFASFLQRMND 62 (140)
T ss_dssp HTEEE-EEEEECTTSCEEESHHHHHHHHHHHHH
T ss_pred HHcCC-cEEEEcCCCCceEcHHHHHHHHHHHhh
Confidence 56777 7654443 5688999999999999883
No 60
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=55.33 E-value=31 Score=20.60 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=24.9
Q ss_pred CCCCCCCceEEEc-----CCccccHHHHHHHHHc---CCCeeEEEeE
Q psy5646 3 KLYKDEDAVLSWN-----GHGTKGSQAIVKYISE---LPPCDHELKS 41 (106)
Q Consensus 3 ~~Y~~~~s~l~~n-----G~~~~G~~~I~~~l~~---lp~~~h~i~s 41 (106)
.+|.+ +..+..- |.++.|+++|.+++.. .|..++++..
T Consensus 40 ~l~a~-D~v~~~p~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~i~~ 85 (129)
T 3fh1_A 40 ELIAE-ECVIENTVPAPDGARHAGRQACVQLWSAIATQPGTRFDLEE 85 (129)
T ss_dssp HHEEE-EEEEECSCSTTTCCEEESHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HhcCC-CEEEECCCCCCCCCcccCHHHHHHHHHHHhcCCCceEEEeE
Confidence 45666 6665542 4567999999988864 5555565543
No 61
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=52.76 E-value=36 Score=20.63 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=27.5
Q ss_pred CCCCCCCCCceEEEcC--CccccHHHHHHHHHcCCCe
Q psy5646 1 MGKLYKDEDAVLSWNG--HGTKGSQAIVKYISELPPC 35 (106)
Q Consensus 1 l~~~Y~~~~s~l~~nG--~~~~G~~~I~~~l~~lp~~ 35 (106)
|..||.+ ++.+.|.. ....|+++|.+++...|..
T Consensus 26 l~~llae-D~v~~~P~~~~~~~Gr~~~~~~~~~~~~~ 61 (128)
T 3en8_A 26 EHDIYDD-DAICDYPQSGERILGRMNLQALRSHHPGK 61 (128)
T ss_dssp HTTTEEE-EEEEEETTTTEEEESHHHHHHHHHHTTCS
T ss_pred HHHhcCC-CEEEECCCCCCEEECHHHHHHHHHHCCCC
Confidence 3578888 99888853 4679999999999999843
No 62
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=52.73 E-value=37 Score=20.76 Aligned_cols=31 Identities=6% Similarity=0.095 Sum_probs=24.6
Q ss_pred CCCCCCCCceEEEcCC----ccccHHHHHHHHHcCC
Q psy5646 2 GKLYKDEDAVLSWNGH----GTKGSQAIVKYISELP 33 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~----~~~G~~~I~~~l~~lp 33 (106)
..++.+ +....+.|. ...|+++|.+++..+.
T Consensus 34 ~~lla~-D~v~~~pg~~~~g~~~G~~~v~~~~~~~~ 68 (134)
T 3dmc_A 34 LDMLTE-DFTFWFPMGEFHGLNVGKERAKEFFTYVS 68 (134)
T ss_dssp HTTEEE-EEEEEESSGGGBEEEESHHHHHHHHHHHH
T ss_pred HHHcCC-CEEEEecCCCCCccchhHHHHHHHHHHHH
Confidence 356777 888888887 5789999998887765
No 63
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=50.11 E-value=38 Score=20.09 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=17.5
Q ss_pred CCCCCCceEEEcC-C----ccccHHHHHH-HHHcCC
Q psy5646 4 LYKDEDAVLSWNG-H----GTKGSQAIVK-YISELP 33 (106)
Q Consensus 4 ~Y~~~~s~l~~nG-~----~~~G~~~I~~-~l~~lp 33 (106)
+|.+ +......| . ...|+++|.+ ++..+.
T Consensus 28 l~a~-D~~~~~~~~~p~~g~~~G~~~~~~~~~~~~~ 62 (134)
T 3grd_A 28 ALSE-KVEWTEAEGFPYGGTYIGVEAIMENVFSRLG 62 (134)
T ss_dssp HEEE-EEEEEECTTSTTCEEEESHHHHHHHTHHHHH
T ss_pred hcCC-CeEEEecCCcccCcEEeCHHHHHHHHHHHHH
Confidence 4555 55444443 2 3589999974 666554
No 64
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=50.06 E-value=39 Score=20.24 Aligned_cols=30 Identities=10% Similarity=-0.031 Sum_probs=19.6
Q ss_pred CCCCCCCceEEEcC-----CccccHHHHH-HHHHcCC
Q psy5646 3 KLYKDEDAVLSWNG-----HGTKGSQAIV-KYISELP 33 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG-----~~~~G~~~I~-~~l~~lp 33 (106)
.+|.+ +......| ....|+++|. +++..+.
T Consensus 35 ~l~a~-D~~~~~~~~~p~~g~~~G~~~i~~~~~~~~~ 70 (140)
T 3ec9_A 35 ADIAP-AIEWTEMAGFPCAGTYRSADEIVRNVFRRLG 70 (140)
T ss_dssp TTEEE-EEEEEECTTSTTCEEECSHHHHHHHTHHHHH
T ss_pred HhcCC-CeEEEEcCCCccceEEcCHHHHHHHHHHHHH
Confidence 56777 66655544 2468999995 5676654
No 65
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=48.28 E-value=43 Score=20.14 Aligned_cols=31 Identities=32% Similarity=0.697 Sum_probs=23.4
Q ss_pred CCCCCCCCceEEEc----CC--ccccHHHHHHHHHcCC
Q psy5646 2 GKLYKDEDAVLSWN----GH--GTKGSQAIVKYISELP 33 (106)
Q Consensus 2 ~~~Y~~~~s~l~~n----G~--~~~G~~~I~~~l~~lp 33 (106)
..+|.+ +..+... |. ...|+++|.+++..+.
T Consensus 32 ~~l~a~-D~~~~~p~~~~g~~~~~~G~~~i~~~~~~~~ 68 (150)
T 1s5a_A 32 TELWDE-NAVFEFPYAPEGSPKRIEGKAAIYDYIKDYP 68 (150)
T ss_dssp HTTEEE-EEEEECTTCCTTSCSEEESHHHHHHHHTTHH
T ss_pred HHhCCC-CEEEEeecCCCCCCccccCHHHHHHHHHHhh
Confidence 357888 7777663 43 4799999999998775
No 66
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=47.44 E-value=13 Score=22.30 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=21.6
Q ss_pred CCCCCCCceEEEcCC-----ccccHHHHHHHHHcCC
Q psy5646 3 KLYKDEDAVLSWNGH-----GTKGSQAIVKYISELP 33 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG~-----~~~G~~~I~~~l~~lp 33 (106)
.+|.+ +......|. ...|+++|.+++..+.
T Consensus 28 ~l~a~-D~~~~~p~~~p~~g~~~G~~~i~~~~~~~~ 62 (135)
T 3fgy_A 28 AVSAE-DIEWIIPGEWPLAGTHRGHAALAALLQKAS 62 (135)
T ss_dssp HTEEE-EEEEEECSSSTTCEEEEHHHHHHHHHHHHH
T ss_pred HhcCC-CeEEEEcCCCccceEEeCHHHHHHHHHHHH
Confidence 46777 766655552 4589999999988775
No 67
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=45.41 E-value=10 Score=22.56 Aligned_cols=38 Identities=18% Similarity=0.035 Sum_probs=24.6
Q ss_pred CCCCCCCceEEE-cC-CccccHHHHHHHHHcC---CCeeEEEeE
Q psy5646 3 KLYKDEDAVLSW-NG-HGTKGSQAIVKYISEL---PPCDHELKS 41 (106)
Q Consensus 3 ~~Y~~~~s~l~~-nG-~~~~G~~~I~~~l~~l---p~~~h~i~s 41 (106)
.+|.+ +..+.. .| ....|+++|.+++..+ |..+.++..
T Consensus 26 ~~~a~-D~~~~~~~g~~~~~G~~ai~~~~~~~~~~~~~~~~~~~ 68 (123)
T 2k54_A 26 AWWAD-DCQYYAFPATLLAGNAAEIRVRHIERFKEPDLYGELLT 68 (123)
T ss_dssp HTEEE-EEEEEETTTEEEEESHHHHHHHHHHHTTCTTCEEEEEE
T ss_pred hhcCC-ceEEEcCCCCcccCCHHHHHHHHHHHcCCCCcEEEEEE
Confidence 46777 766543 33 2579999999888764 445555443
No 68
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=44.64 E-value=50 Score=19.92 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=25.5
Q ss_pred CCCCCCCCceEEEcC-CccccHHHHHHHHHcCC
Q psy5646 2 GKLYKDEDAVLSWNG-HGTKGSQAIVKYISELP 33 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG-~~~~G~~~I~~~l~~lp 33 (106)
..+|.+ ++.+...| .++.|+++|.+++..+.
T Consensus 44 ~~l~a~-D~~~~~~~~~~~~G~~~i~~~~~~~~ 75 (149)
T 1nww_A 44 IEYFAE-DTMYQNMPLPPAYGRDAVEQTLAGLF 75 (149)
T ss_dssp HTTBCS-SCEEEETTSCCEESHHHHHHHHHHHH
T ss_pred HHHhCC-CEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 468999 98887766 47889999999998876
No 69
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=44.62 E-value=2.2 Score=25.67 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCCCCCCceEEEcC--CccccHHHHHHHHHcCC
Q psy5646 3 KLYKDEDAVLSWNG--HGTKGSQAIVKYISELP 33 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG--~~~~G~~~I~~~l~~lp 33 (106)
.+|.+ ++.+...+ .++.|+++|.+++..+.
T Consensus 30 ~l~a~-D~~~~~p~~~~~~~G~~~i~~~~~~~~ 61 (131)
T 1oh0_A 30 QMYAD-DATVEDPFGQPPIHGREQIAAFYRQGL 61 (131)
T ss_dssp HHEEE-EEEEESSTTSCCEEHHHHHHHHHHHHH
T ss_pred HHcCC-CEEEEcCCCCCCcccHHHHHHHHHHHh
Confidence 46777 77666543 48899999999887763
No 70
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=44.11 E-value=55 Score=20.27 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=40.2
Q ss_pred CCCCCCCCceEEEcCC----ccccHHHHHHHHHcCCCeeEEEeEEEEE-eCCcccccCceeEEEEEEEEEEECCceeeee
Q psy5646 2 GKLYKDEDAVLSWNGH----GTKGSQAIVKYISELPPCDHELKSMDIH-RLPEEAAQNQIAYLISTSGTVVYKNMKKTGF 76 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~----~~~G~~~I~~~l~~lp~~~h~i~s~D~q-~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F 76 (106)
..||.+ +..+.-... ...|+++|.+++..+.. ..++..++.. ++.. ++...+-....|+.+-.|. +..+
T Consensus 43 ~~lya~-D~v~~dp~~~~~~~~~G~eai~~~~~~~~~-~~~~~~~~i~~~~v~---gd~v~v~~~~~gth~~tG~-~i~~ 116 (136)
T 3hk4_A 43 EKYNAD-DIASYEAMEGPMAVSHGKEALRQKSQWWQE-NHEVHGGSVEGPYVN---GDQFALRFKFDVTPKATGE-RVTM 116 (136)
T ss_dssp HHHEEE-EEEEECSSCSTTSEEESHHHHHHHHHHHHH-TEEEEEEEEEEEEEE---TTEEEEEEEEEEEETTTCC-CEEE
T ss_pred HHHCCC-CEEEEcCCCCCccccCCHHHHHHHHHHHHh-cCCeeeeeecceEEc---CCEEEEEEEEEEEECCCCc-EEEE
Confidence 357777 776665421 46899999998876651 1122222222 1111 1112344455555442343 4455
Q ss_pred eEEEEEEEeCC
Q psy5646 77 NQNFIISAEGA 87 (106)
Q Consensus 77 ~qtFvL~~~~~ 87 (106)
..+-++.=.++
T Consensus 117 ~~i~v~rv~DG 127 (136)
T 3hk4_A 117 DEVGLYTVKNG 127 (136)
T ss_dssp EEEEEEEEETT
T ss_pred EEEEEEEEECC
Confidence 55555544444
No 71
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=40.96 E-value=36 Score=20.86 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=25.9
Q ss_pred CCCCCCCceEEEcCCccccHHHHHHHHHc----CCCeeEEEeEEE
Q psy5646 3 KLYKDEDAVLSWNGHGTKGSQAIVKYISE----LPPCDHELKSMD 43 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~----lp~~~h~i~s~D 43 (106)
.+|.+ +.....-+....|++++.+.+.. .|..++++..+-
T Consensus 27 ~~~a~-D~v~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~ 70 (152)
T 2gex_A 27 AHWAP-DVVHYDDEDKPVSAEEVVRRMNSAVEAFPDLRLDVRSIV 70 (152)
T ss_dssp TTEEE-EEEEECTTSCEECHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHcCC-CeEEeCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 56777 65443324578899999877654 566677766543
No 72
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=40.28 E-value=57 Score=19.32 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=25.0
Q ss_pred CCCCCCCceEEEcCCccccHHHHHHHHHcCCC
Q psy5646 3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELPP 34 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp~ 34 (106)
.++.+ +..+...|.++.|++++.+++..+..
T Consensus 29 ~lla~-Dvv~~~~~g~~~G~~~v~~~~~~~~~ 59 (114)
T 3f40_A 29 KRLNE-NFTFNGPMGHREGSERYMNDMEKMKF 59 (114)
T ss_dssp HTEEE-EEEEEETTEEEESHHHHHHHHHHHCC
T ss_pred HhcCC-CeEEECCCCcccCHHHHHHHHHHHHh
Confidence 45666 77777777789999999999988865
No 73
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=38.94 E-value=80 Score=20.64 Aligned_cols=50 Identities=8% Similarity=0.173 Sum_probs=30.0
Q ss_pred ccccHHHHHHHHHcCCC--eeEEEeEEEEEeCCcccccCceeEEEEEEE--EEEECCce
Q psy5646 18 GTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAYLISTSG--TVVYKNMK 72 (106)
Q Consensus 18 ~~~G~~~I~~~l~~lp~--~~h~i~s~D~q~~~~~~~~~~~~ili~V~G--~v~~~~~~ 72 (106)
.+.|+++|.+++..++. -..+...+..+++.+. ..+++-..| .+...|.+
T Consensus 61 ~~~Gre~l~~~~~~~~~~~~~~~~~~~~i~~t~Dp-----d~vvvE~~~~g~i~~tG~~ 114 (163)
T 3ff0_A 61 VIRGKDKLAEHAVWSLKCFPDWEWYNIKVFETDDP-----NHFWVECDGHGKILFPGYP 114 (163)
T ss_dssp EEESHHHHHHHHHHHHHHSTTCEEEEEEEEEBSST-----TEEEEEEEEEEEECCTTSC
T ss_pred ceecHHHHHHHHHHHHhhCCCceeeeEEEEEcCCC-----CEEEEEEEEEEEEcCCCcc
Confidence 37899999999877651 1235555666666542 245555554 44444554
No 74
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=37.21 E-value=8.7 Score=24.20 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=23.7
Q ss_pred CCCCCCCCCceEEE--cCCccccHHHHHHHHHcCC
Q psy5646 1 MGKLYKDEDAVLSW--NGHGTKGSQAIVKYISELP 33 (106)
Q Consensus 1 l~~~Y~~~~s~l~~--nG~~~~G~~~I~~~l~~lp 33 (106)
|..+|.+ +..+.- -+.++.|+++|.++|..+-
T Consensus 30 l~~l~a~-D~v~~~P~~~~~~~G~~~v~~~~~~~~ 63 (143)
T 3mso_A 30 LPRLLHP-DAVFRSPMAHKPYAGAPVVSMILNTVL 63 (143)
T ss_dssp GGGGEEE-EEEEECSSCSSCEESHHHHHHHHHHHH
T ss_pred HHHhcCC-CEEEECCCCCCCccCHHHHHHHHHHHH
Confidence 3467777 777664 2368899999999987764
No 75
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=33.01 E-value=47 Score=20.08 Aligned_cols=41 Identities=5% Similarity=0.020 Sum_probs=25.9
Q ss_pred CCCCCCCceEEEcC-----CccccHHHHHHHHHc----CCCeeEEEeEEEE
Q psy5646 3 KLYKDEDAVLSWNG-----HGTKGSQAIVKYISE----LPPCDHELKSMDI 44 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG-----~~~~G~~~I~~~l~~----lp~~~h~i~s~D~ 44 (106)
++|.+ +..+.++. ....|++++.+.+.. .|..++++..+-+
T Consensus 30 ~~~a~-d~~~~~~p~~~~~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 79 (146)
T 3f9s_A 30 KYIAP-KYTVLHDPGDPWEGRELDVAGYKERVKTLRAAFPDQCFDIQGLFA 79 (146)
T ss_dssp HHEEE-EEEEEECTTCTTTTCEECHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHcCC-CeeeccCCCCCCCCCcCCHHHHHHHHHHHHhhCCCcEEEEEEEEE
Confidence 45666 65534442 256899998887754 5677777765543
No 76
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=32.93 E-value=73 Score=18.40 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=24.6
Q ss_pred CCCCCCCceEEEc---CCccccHHHHHHHHHc----CCCeeEEEeEEE
Q psy5646 3 KLYKDEDAVLSWN---GHGTKGSQAIVKYISE----LPPCDHELKSMD 43 (106)
Q Consensus 3 ~~Y~~~~s~l~~n---G~~~~G~~~I~~~l~~----lp~~~h~i~s~D 43 (106)
++|.+ +... +| +....|++++.+.+.. .|..++++..+=
T Consensus 25 ~~~a~-D~v~-h~~~~~~~~~G~~~~~~~~~~~~~~~p~~~~~i~~~~ 70 (117)
T 3ff2_A 25 SYMTD-DACE-ANYRGDVVREGKEGTRSGLAAAFARWPQNHAEIKDAQ 70 (117)
T ss_dssp TTEEE-EEEE-EETTSCEEECHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HhcCC-cEEE-EeCCCCccccCHHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 46666 5433 34 3467899999887754 466666665443
No 77
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=31.79 E-value=94 Score=19.29 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=22.0
Q ss_pred CCCCCCCceEEEcCC------ccccHHHHHHHHHcCC
Q psy5646 3 KLYKDEDAVLSWNGH------GTKGSQAIVKYISELP 33 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG~------~~~G~~~I~~~l~~lp 33 (106)
.+|.+ ++.+..-+. ...|+++|.+++..+.
T Consensus 46 ~l~a~-D~v~~~P~~~~g~~~~~~G~~ai~~~~~~~~ 81 (163)
T 1z1s_A 46 DLFHP-EGVLEFPYAPPGWKTRFEGRETIWAHMRLFP 81 (163)
T ss_dssp HTEEE-EEEEECSSCCTTSCCEEESHHHHHHTTTTGG
T ss_pred HHCCC-CEEEECcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 57777 766654322 3789999999998876
No 78
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=25.43 E-value=12 Score=24.21 Aligned_cols=32 Identities=9% Similarity=0.292 Sum_probs=27.4
Q ss_pred cCCccccHHHHHHHHHcCCCeeEEEeEEEEEe
Q psy5646 15 NGHGTKGSQAIVKYISELPPCDHELKSMDIHR 46 (106)
Q Consensus 15 nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~ 46 (106)
+|+.+..+.++.++|.+.+.+...+..||...
T Consensus 66 ~GKkfRSk~Ev~ryL~~~~~~~~~~e~FdF~~ 97 (133)
T 1ub1_A 66 QGKAFRSKVELIAYFEKVGDTSLDPNDFDFTV 97 (133)
T ss_dssp TSCEESSHHHHHHHHTTSCCCSCCGGGCCCCC
T ss_pred CCCeeeCHHHHHHHHHHCCccCCCHhHCcccc
Confidence 68889999999999999987667788888774
No 79
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=25.42 E-value=9.1 Score=21.78 Aligned_cols=31 Identities=6% Similarity=0.157 Sum_probs=25.1
Q ss_pred cCCccccHHHHHHHHHcCCCeeEEEeEEEEE
Q psy5646 15 NGHGTKGSQAIVKYISELPPCDHELKSMDIH 45 (106)
Q Consensus 15 nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q 45 (106)
+|..+..+.+|.++|...|.+...+..||.+
T Consensus 34 ~Gkk~RSk~ev~~yL~~~~~~~l~~~~FdF~ 64 (69)
T 3vxv_A 34 QGLKFRSKRSLANYLLKNGETFLKPEDFNFT 64 (69)
T ss_dssp TSCEECSHHHHHHHHHHHCCCCCCGGGSCCC
T ss_pred CCCEeeCHHHHHHHHHhCCCCCCCHHHccee
Confidence 6888999999999999988655666666655
No 80
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=24.43 E-value=50 Score=23.14 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=23.9
Q ss_pred CCCCCCCCceEEEc--CCccccHHHHHHHHHcCC
Q psy5646 2 GKLYKDEDAVLSWN--GHGTKGSQAIVKYISELP 33 (106)
Q Consensus 2 ~~~Y~~~~s~l~~n--G~~~~G~~~I~~~l~~lp 33 (106)
..+|.+ ++.+..- +.+..|+++|.+++..+.
T Consensus 160 ~~l~a~-D~v~~~P~~~~~~~G~~ai~~~~~~~~ 192 (283)
T 3rga_A 160 LKLYSP-RIRFEDPVGSWTRTGLEALRAHATMAV 192 (283)
T ss_dssp HTTEEE-EEEEESSTTSCEEESHHHHHHHHHHHH
T ss_pred HHhcCC-CeEEECCCCCCcccCHHHHHHHHHHhh
Confidence 467888 7776642 357899999999998776
No 81
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=23.96 E-value=7.7 Score=23.70 Aligned_cols=32 Identities=9% Similarity=0.282 Sum_probs=25.2
Q ss_pred cCCccccHHHHHHHHHcCCCeeEEEeEEEEEe
Q psy5646 15 NGHGTKGSQAIVKYISELPPCDHELKSMDIHR 46 (106)
Q Consensus 15 nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~ 46 (106)
.|+.+..+.++.++|.+.|.+...+..||...
T Consensus 52 ~GkkfRSk~ev~ryL~~~g~~~~~~~~FdF~~ 83 (97)
T 3c2i_A 52 QGKAFRSKVELIMYFEKVGDTSLDPNDFDFTV 83 (97)
T ss_dssp TSCEECSHHHHHHHHHHHTCCSSCTTTCCCCS
T ss_pred CCCEEECHHHHHHHHHHCCCCCCCHhhccccC
Confidence 68889999999999988776556666676653
No 82
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=23.49 E-value=1.3e+02 Score=18.13 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=22.8
Q ss_pred CCCCCCCceEEEcC-CccccHHHHHHHHHcCCC
Q psy5646 3 KLYKDEDAVLSWNG-HGTKGSQAIVKYISELPP 34 (106)
Q Consensus 3 ~~Y~~~~s~l~~nG-~~~~G~~~I~~~l~~lp~ 34 (106)
.+|.+ +..+.-.| .++.|+++|.+++..+..
T Consensus 38 ~l~a~-D~v~~~~~~~~~~G~~~i~~~~~~~~~ 69 (149)
T 2bng_A 38 AALGD-DLVYENVGFSRIRGGRRTATLLRRMQG 69 (149)
T ss_dssp HHEEE-EEEEEETTTEEEECHHHHHHHHHTTTT
T ss_pred HHcCC-CEEEEeCCCCCccCHHHHHHHHHHHHh
Confidence 46667 66555444 467899999999999873
No 83
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=23.08 E-value=33 Score=22.75 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=17.9
Q ss_pred CCCCCceEEEcCCccccHHHHHHHHHcC
Q psy5646 5 YKDEDAVLSWNGHGTKGSQAIVKYISEL 32 (106)
Q Consensus 5 Y~~~~s~l~~nG~~~~G~~~I~~~l~~l 32 (106)
|.+ +|.-.=-...+.|+++|.++|..-
T Consensus 42 YT~-Ds~WRNR~eF~~GR~eI~~FLtrK 68 (166)
T 2imj_A 42 YTL-DTQWRNRAEFAHNREEAKAFLTRK 68 (166)
T ss_dssp EEE-EEEEEETTEEECSHHHHHHHHHHH
T ss_pred cCC-CCceeccccccCcHHHHHHHHHHH
Confidence 545 443332345789999999998654
No 84
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=23.02 E-value=58 Score=20.05 Aligned_cols=41 Identities=5% Similarity=-0.011 Sum_probs=24.2
Q ss_pred CCCCCCCCceEEEcCCc--cccHHHHHHHHHc----CC-CeeEEEeEEE
Q psy5646 2 GKLYKDEDAVLSWNGHG--TKGSQAIVKYISE----LP-PCDHELKSMD 43 (106)
Q Consensus 2 ~~~Y~~~~s~l~~nG~~--~~G~~~I~~~l~~----lp-~~~h~i~s~D 43 (106)
..+|.+ +......+.. ..|++++.+.+.. .| ..++++..+-
T Consensus 33 ~~~~a~-D~v~~~p~~~~~~~G~~~~~~~~~~~~~~~p~d~~~~i~~~~ 80 (153)
T 2f99_A 33 ADYIHP-EYMNPGTLEFTSLRGPELFAINVAWVKKTFSEEARLEEVGIE 80 (153)
T ss_dssp GGTEEE-EEECGGGTTTCCCCHHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHhcCC-CeEEecCCCCCCCCCHHHHHHHHHHHHHHCCCCcEEEEEEEE
Confidence 356666 5332222322 4899999887765 46 6777765543
No 85
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=22.32 E-value=96 Score=18.45 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCeeEEEeEEE
Q psy5646 22 SQAIVKYISELPPCDHELKSMD 43 (106)
Q Consensus 22 ~~~I~~~l~~lp~~~h~i~s~D 43 (106)
.+.|.++|..||...-.+...+
T Consensus 63 P~~vrekL~~lp~I~~~L~~~~ 84 (88)
T 1mby_A 63 PEYIKQKLQLLSSILLMFSNPT 84 (88)
T ss_dssp CHHHHHHHTTTCCEEEEECC--
T ss_pred cHHHHHHHhhhHHHHHHHhccC
Confidence 4679999999998777665543
No 86
>1pfs_A PF3 SSDBP, PF3 single-stranded DNA binding protein; viral, bacteriophage PF3; NMR {Pseudomonas phage PF3} SCOP: b.40.4.7
Probab=22.17 E-value=1.2e+02 Score=17.42 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=15.1
Q ss_pred eEEEEEEEEEEEC---CceeeeeeEEEE
Q psy5646 57 AYLISTSGTVVYK---NMKKTGFNQNFI 81 (106)
Q Consensus 57 ~ili~V~G~v~~~---~~~~~~F~qtFv 81 (106)
.|+|.++|.++-+ ...+-.|.|-|+
T Consensus 2 ti~I~~T~~~RsGvsksg~pYtm~eaf~ 29 (78)
T 1pfs_A 2 NIQITFTDSVRQGTSAKGNPYTFQEGFL 29 (78)
T ss_dssp EEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred eEEEEEeeeEEecccccCCceEeEeeee
Confidence 5778888877754 113444556555
No 87
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=21.79 E-value=62 Score=17.15 Aligned_cols=21 Identities=5% Similarity=0.031 Sum_probs=17.0
Q ss_pred eEEEcCCccccHHHHHHHHHc
Q psy5646 11 VLSWNGHGTKGSQAIVKYISE 31 (106)
Q Consensus 11 ~l~~nG~~~~G~~~I~~~l~~ 31 (106)
.+..+|..+.|-++|.+++.+
T Consensus 54 ~l~~~g~~i~g~~~i~~~~~~ 74 (82)
T 1fov_A 54 QIFIDAQHIGGYDDLYALDAR 74 (82)
T ss_dssp EEEETTEEEESHHHHHHHHHT
T ss_pred EEEECCEEEeCHHHHHHHHHC
Confidence 456789999999999988765
Done!